2DDHA

Crystal structure of acyl-coa oxidase complexed with 3-oh-dodecanoate
Total Genus 252
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
252
sequence length
655
structure length
622
Chain Sequence
MNPDLRKERASATFNPELITHILDGSPENTRRRREIENLILNDPDFQHEDYNFLTRSQRYEVAVKKSATMVKKMREYGISDPEEIMWFKNSVHRGHPEPLDLHLGMFLPTLLQATAEQQERFFMPAWNLEITGTYAQTEMGHGTHLRGLETTATYDPKTQEFILNSPTVTSIKWWPGGLGKTSNHAIVLAQLITQGECYGLHAFVVPIREIGTHKPLPGITVGDIGPKFGYEEMDNGYLKMDNYRIPRENMLMKYAQVKPDGTYVKPLMVFVRSFLVGNAAQSLSKACTIAIRYSAVRRQSEIKQSEPEPQILDFQTQQYKLFPLLATAYAFHFVGRYMKETYLRSELPELHALTAGLKAFTTWTANAGIEECRMACGGHGYSHSSGIPNIYVTFTPACTFEGENTVMMLQTARFLMKIYDQVRSGKLVGGMVSYLNDLPSVDINSLEGLTEAYKLRAARLVEIAAKNLQTHVSHRKSKEVAWNLTSVDLVRASEAHCHYVVVKVFSDKLPKIQDKAVQAVLRNLCLLYSLYGISQKGGDFLEGSIITGAQLSQVNARILELLTLIRPNAVALVDAFDFKDMTLGSVLGRYDGNVYENLFEWAKKSPLNKTEVHESYHKHLK
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Acyl-CoA oxidase
publication title Three-Dimensional Structure of Rat-Liver Acyl-CoA Oxidase in Complex with a Fatty Acid: Insights into Substrate-Recognition and Reactivity toward Molecular Oxygen.
pubmed doi rcsb
source organism Rattus norvegicus
molecule tags Oxidoreductase
total genus 252
structure length 622
sequence length 655
ec nomenclature ec 1.3.3.6: Acyl-CoA oxidase.
pdb deposition date 2006-01-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01756 ACOX Acyl-CoA oxidase
A PF02770 Acyl-CoA_dh_M Acyl-CoA dehydrogenase, middle domain
A PF14749 Acyl-CoA_ox_N Acyl-coenzyme A oxidase N-terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.540.10 Mainly Alpha Orthogonal Bundle Butyryl-Coa Dehydrogenase, subunit A; domain 1 Acyl-CoA dehydrogenase/oxidase, N-terminal domain 2ddhA01
1.20.140.10 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A; domain 3 Butyryl-CoA Dehydrogenase, subunit A, domain 3 2ddhA03
1.20.140.10 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A; domain 3 Butyryl-CoA Dehydrogenase, subunit A, domain 3 2ddhA04
2.40.110.10 Mainly Beta Beta Barrel Butyryl-CoA Dehydrogenase, subunit A; domain 2 Butyryl-CoA Dehydrogenase, subunit A, domain 2 2ddhA02
4Q5CA 4XVXA 4WJYA 3NF4A 3EOMA 2JBSA 2UXWA 5K3GA 3MDDA 2PG0A 2ZAFA 1FS8A 1R2JA 3GQTA 1EGDA 3M9VA 4DOYA 2ZO5A 2YYGA 3BNJA 2YYMA 3FCJA 3BNHA 3HWCA 3MKHA 4W9UA 4Q17A 1EGCA 3MPIA 4U83A 4G5EA 3D9DA 1T9GA 1EGEA 2WBIA 4HR3A 5K3JA 3D6BA 1FS9A 4JEKA 2VR0A 2JBRA 3F29A 4KCFA 3SXQA 3D9EA 3R7KA 1SIRA 3UBRA 4IRNA 2YYIA 4ZXVA 3EONA 4Q0TA 3GM6A 1BUCA 5K3IA 2REHA 3AFFA 4M9AA 3RKHA 3LGQA 4L3XA 3II9A 3BNFA 2C0UA 4NXLA 4IV6A 2CX9A 2YYLA 3AFEA 4Q4UA 1UDYA 1IVHA 1IS2A 3P4TA 1GU6A 3MXLA 4N5FA 2YYKA 1FS7A 2RFQA 2Z1QA 5K3HA 1WS9A 2R0NA 1W07A 3PFDA 3D9GA 1RX0A 3B96A 2JBTA 2DDHA 2D29A 2R0MA 2E81A 2IX5A 1UKWA 4L3ZA 3GNCA 3UU9A 3FO3A 3MDEA 4O5MA 3S7WA 4P13A 3BNGA 4OO2A 3SCEA 4X28C 3MPJA 4KTOA 2RDZA 3D9FA 4L1FA 1SIQA 4L3YA 3X0YA 2YYJA 1U8VA 2FONA 4Q5BA 2OT4A 2C12A 3LG1A 3OIBA 4Q1OA 2RF7A 2DVLA 2JIFA 3MMOA 3TTBA 3SF6A 2EBAA 3L1TA 3X0XA 3OWMA 3SWOA 4ZYJA 2A1TA 4RM7A 1JQIA 2E80A 1OAHA 3TORA 4L38A 3D1IA 2IX6A 2J7AA 1QDBA 2VIGA 3OWAA 2OR0A 4X28A
chains in the Genus database with same CATH superfamily
3U33A 4Q5CA 4XVXA 4P79A 4V26A 4WJYA 2AO2A 3NF4A 2Q8GA 3EOMA 1K93A 2JBSA 4MPEA 2UXWA 3Q22A 4AKIA 1Y8PA 5K3GA 3MDDA 2PG0A 2ZAFA 1GKZA 3Q0AA 1FS8A 1R2JA 3GQTA 1EGDA 3M9VA 4DOYA 1X8ZA 3VKGA 2QR4A 2ZO5A 2YYGA 3BNJA 2YYMA 3FCJA 3BNHA 3HWCA 3MKHA 4W9UA 2CJ6A 2PO4A 3KMLA 4Q17A 1EGCA 3MPIA 2BU8A 2VF1A 4U83A 5GJWE 4G5EA 3D9DA 1T9GA 1EGEA 2WBIA 4HR3A 3D2RA 5M4NA 4J1VA 5K3JA 5M4KA 3TZ4A 3D6BA 1FS9A 3TZ0A 4JEKA 2VR0A 2JBRA 2CJ8A 4H7QA 5M4MA 1GJVA 4AKHA 3F29A 4KCFA 1XFZA 3SXQA 3D9EA 2CJ5A 3R7KA 1SIRA 3UBRA 1Y8NA 4IRNA 2YYIA 4ZXVA 3EONA 1S26A 4DZYA 4Q0TA 3CRKA 2HJNA 3GM6A 1BUCA 4E02A 5K3IA 2REHA 3AFFA 4M9AA 2AZEA 3Q24A 3Q23A 3RKHA 3LGQA 4FF2A 4MPCA 1X91A 2YGWA 2BU2A 4L3XA 3II9A 1JM6A 3BNFA 4MP2A 2Q8HA 2C0UA 4NXLA 2R05A 4IV6A 2ZDXA 2CX9A 2CJ4A 2EC5A 2YYLA 4LQQB 3VADA 3AFEA 2R02A 4Q4UA 3X29A 1UDYA 1IVHA 1IS2A 2LFWA 2FP1A 3P4TA 1GU6A 3MXLA 5BRMA 4N5FA 1LVCA 4HKSA 5B5VA 3TZ5A 2YYKA 1FS7A 3TZ2A 5M4PA 2BTZA 2RFQA 2Z1QA 5K3HA 1WS9A 1PK0A 2BU6A 2XQRB 4FZ4A 2R0NA 4AKGA 1W07A 5GJVE 3PFDA 2XS1A 3D9GA 1RX0A 2PNRA 5BRKA 3B96A 1XFUA 4F0XA 2JBTA 4FF3A 2DDHA 2D29A 2R0MA 2E81A 2IX5A 1X90A 1UKWA 4QICA 4L3ZA 3GNCA 3UU9A 3FO3A 2GBBA 3MDEA 4O5MA 3CRLA 4V25A 3S7WA 5J71A 4P13A 3BNGA 4OO2A 3SCEA 4X28C 3MPJA 4KTOA 2EBFX 4AI6A 3CE2A 4JIZA 3VKHA 2RDZA 2F6LA 3D9FA 4L1FA 1K8TA 4HKRA 4MPNA 1SIQA 2OEVA 2OEXA 4KSFA 3X0YA 2OJQA 2YYJA 3N0RA 4L3YA 1U8VA 4H85A 2FONA 2FP2A 2R03A 2ZKJA 3C2PA 4Q5BA 2OT4A 2C12A 1XFXA 1K90A 3LG1A 4MP7A 1Y8OA 3OIBA 4G97A 1R3BA 4Q1OA 4E01A 1PI1A 2CJ7A 3DJLA 2RF7A 2DVLA 1XFVA 5B5WA 2JIFA 1XG2B 4E00A 5EZ3A 1SK6A 3MMOA 2Q8FA 3TTBA 1RJ1A 3SF6A 2Q8IA 4H81A 2XS8A 2EBAA 3L1TA 4KS9A 3X0XA 3OWMA 3C46A 3SWOA 4ZYJA 1RJ4A 2BU5A 1RP3A 2A1TA 1XFYA 4RM7A 3C3LA 4FF1A 1SC5A 1JQIA 1GKXA 2E80A 1OAHA 3TORA 1Y0VA 4LQSB 4L38A 2EBHX 3D1IA 5J6AA 2IX6A 2J7AA 4JIOA 4KSAA 1QDBA 5B6BA 2VIGA 2E0AA 2ZDYA 2BU7A 4FF4A 1XFWA 3OWAA 2OR0A 4X28A
chains in the Genus database with same CATH topology
4Q5CA 4XVXA 4WJYA 3NF4A 3EOMA 2JBSA 2UXWA 5K3GA 3MDDA 2PG0A 2ZAFA 1FS8A 1R2JA 3GQTA 1EGDA 3M9VA 4DOYA 2ZO5A 2YYGA 3BNJA 2YYMA 3FCJA 3BNHA 3HWCA 3MKHA 4W9UA 4Q17A 1EGCA 3MPIA 4U83A 4G5EA 3D9DA 1T9GA 1EGEA 2WBIA 4HR3A 5K3JA 3D6BA 1FS9A 4JEKA 2VR0A 2JBRA 3F29A 4KCFA 3SXQA 3D9EA 3R7KA 1SIRA 3UBRA 4IRNA 2YYIA 4ZXVA 3EONA 4Q0TA 3GM6A 1BUCA 5K3IA 2REHA 3AFFA 4M9AA 3RKHA 3LGQA 4L3XA 3II9A 3BNFA 2C0UA 4NXLA 4IV6A 2CX9A 2YYLA 3AFEA 4Q4UA 1UDYA 1IVHA 1IS2A 3P4TA 1GU6A 3MXLA 4N5FA 2YYKA 1FS7A 2RFQA 2Z1QA 5K3HA 1WS9A 2R0NA 1W07A 3PFDA 3D9GA 1RX0A 3B96A 2JBTA 2DDHA 2D29A 2R0MA 2E81A 2IX5A 1UKWA 4L3ZA 3GNCA 3UU9A 3FO3A 3MDEA 4O5MA 3S7WA 4P13A 3BNGA 4OO2A 3SCEA 4X28C 3MPJA 4KTOA 2RDZA 3D9FA 4L1FA 1SIQA 4L3YA 3X0YA 2YYJA 1U8VA 2FONA 4Q5BA 2OT4A 2C12A 3LG1A 3OIBA 4Q1OA 2RF7A 2DVLA 2JIFA 3MMOA 3TTBA 3SF6A 2EBAA 3L1TA 3X0XA 3OWMA 3SWOA 4ZYJA 2A1TA 4RM7A 1JQIA 2E80A 1OAHA 3TORA 4L38A 3D1IA 2IX6A 2J7AA 1QDBA 2VIGA 3OWAA 2OR0A 4X28A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4Q5C A;  4XVX A;  4WJY A;  3NF4 A;  3EOM A;  2JBS A;  2UXW A;  5K3G A;  3MDD A;  2PG0 A;  2ZAF A;  1FS8 A;  1R2J A;  3GQT A;  1EGD A;  3M9V A;  4DOY A;  2ZO5 A;  2YYG A;  3BNJ A;  2YYM A;  3FCJ A;  3BNH A;  3HWC A;  3MKH A;  4W9U A;  4Q17 A;  1EGC A;  3MPI A;  4U83 A;  4G5E A;  3D9D A;  1T9G A;  1EGE A;  2WBI A;  4HR3 A;  5K3J A;  3D6B A;  1FS9 A;  4JEK A;  2VR0 A;  2JBR A;  3F29 A;  4KCF A;  3SXQ A;  3D9E A;  3R7K A;  1SIR A;  3UBR A;  4IRN A;  2YYI A;  4ZXV A;  3EON A;  4Q0T A;  3GM6 A;  1BUC A;  5K3I A;  2REH A;  3AFF A;  4M9A A;  3RKH A;  3LGQ A;  4L3X A;  3II9 A;  3BNF A;  2C0U A;  4NXL A;  4IV6 A;  2CX9 A;  2YYL A;  3AFE A;  4Q4U A;  1UDY A;  1IVH A;  1IS2 A;  3P4T A;  1GU6 A;  3MXL A;  4N5F A;  2YYK A;  1FS7 A;  2RFQ A;  2Z1Q A;  5K3H A;  1WS9 A;  2R0N A;  1W07 A;  3PFD A;  3D9G A;  1RX0 A;  3B96 A;  2JBT A;  2DDH A;  2D29 A;  2R0M A;  2E81 A;  2IX5 A;  1UKW A;  4L3Z A;  3GNC A;  3UU9 A;  3FO3 A;  3MDE A;  4O5M A;  3S7W A;  4P13 A;  3BNG A;  4OO2 A;  3SCE A;  4X28 C;  3MPJ A;  4KTO A;  2RDZ A;  3D9F A;  4L1F A;  1SIQ A;  4L3Y A;  3X0Y A;  2YYJ A;  1U8V A;  2FON A;  4Q5B A;  2OT4 A;  2C12 A;  3LG1 A;  3OIB A;  4Q1O A;  2RF7 A;  2DVL A;  2JIF A;  3MMO A;  3TTB A;  3SF6 A;  2EBA A;  3L1T A;  3X0X A;  3OWM A;  3SWO A;  4ZYJ A;  2A1T A;  4RM7 A;  1JQI A;  2E80 A;  1OAH A;  3TOR A;  4L38 A;  3D1I A;  2IX6 A;  2J7A A;  1QDB A;  2VIG A;  3OWA A;  2OR0 A;  4X28 A; 
#chains in the Genus database with same CATH topology
 3U33 A;  4Q5C A;  4XVX A;  4P79 A;  4V26 A;  4WJY A;  2AO2 A;  3NF4 A;  2Q8G A;  3EOM A;  1K93 A;  2JBS A;  4MPE A;  2UXW A;  3Q22 A;  4AKI A;  1Y8P A;  5K3G A;  3MDD A;  2PG0 A;  2ZAF A;  1GKZ A;  3Q0A A;  1FS8 A;  1R2J A;  3GQT A;  1EGD A;  3M9V A;  4DOY A;  1X8Z A;  3VKG A;  2QR4 A;  2ZO5 A;  2YYG A;  3BNJ A;  2YYM A;  3FCJ A;  3BNH A;  3HWC A;  3MKH A;  4W9U A;  2CJ6 A;  2PO4 A;  3KML A;  4Q17 A;  1EGC A;  3MPI A;  2BU8 A;  2VF1 A;  4U83 A;  5GJW E;  4G5E A;  3D9D A;  1T9G A;  1EGE A;  2WBI A;  4HR3 A;  3D2R A;  5M4N A;  4J1V A;  5K3J A;  5M4K A;  3TZ4 A;  3D6B A;  1FS9 A;  3TZ0 A;  4JEK A;  2VR0 A;  2JBR A;  2CJ8 A;  4H7Q A;  5M4M A;  1GJV A;  4AKH A;  3F29 A;  4KCF A;  1XFZ A;  3SXQ A;  3D9E A;  2CJ5 A;  3R7K A;  1SIR A;  3UBR A;  1Y8N A;  4IRN A;  2YYI A;  4ZXV A;  3EON A;  1S26 A;  4DZY A;  4Q0T A;  3CRK A;  2HJN A;  3GM6 A;  1BUC A;  4E02 A;  5K3I A;  2REH A;  3AFF A;  4M9A A;  2AZE A;  3Q24 A;  3Q23 A;  3RKH A;  3LGQ A;  4FF2 A;  4MPC A;  1X91 A;  2YGW A;  2BU2 A;  4L3X A;  3II9 A;  1JM6 A;  3BNF A;  4MP2 A;  2Q8H A;  2C0U A;  4NXL A;  2R05 A;  4IV6 A;  2ZDX A;  2CX9 A;  2CJ4 A;  2EC5 A;  2YYL A;  4LQQ B;  3VAD A;  3AFE A;  2R02 A;  4Q4U A;  3X29 A;  1UDY A;  1IVH A;  1IS2 A;  2LFW A;  2FP1 A;  3P4T A;  1GU6 A;  3MXL A;  5BRM A;  4N5F A;  1LVC A;  4HKS A;  5B5V A;  3TZ5 A;  2YYK A;  1FS7 A;  3TZ2 A;  5M4P A;  2BTZ A;  2RFQ A;  2Z1Q A;  5K3H A;  1WS9 A;  1PK0 A;  2BU6 A;  2XQR B;  4FZ4 A;  2R0N A;  4AKG A;  1W07 A;  5GJV E;  3PFD A;  2XS1 A;  3D9G A;  1RX0 A;  2PNR A;  5BRK A;  3B96 A;  1XFU A;  4F0X A;  2JBT A;  4FF3 A;  2DDH A;  2D29 A;  2R0M A;  2E81 A;  2IX5 A;  1X90 A;  1UKW A;  4QIC A;  4L3Z A;  3GNC A;  3UU9 A;  3FO3 A;  2GBB A;  3MDE A;  4O5M A;  3CRL A;  4V25 A;  3S7W A;  5J71 A;  4P13 A;  3BNG A;  4OO2 A;  3SCE A;  4X28 C;  3MPJ A;  4KTO A;  2EBF X;  4AI6 A;  3CE2 A;  4JIZ A;  3VKH A;  2RDZ A;  2F6L A;  3D9F A;  4L1F A;  1K8T A;  4HKR A;  4MPN A;  1SIQ A;  2OEV A;  2OEX A;  4KSF A;  3X0Y A;  2OJQ A;  2YYJ A;  3N0R A;  4L3Y A;  1U8V A;  4H85 A;  2FON A;  2FP2 A;  2R03 A;  2ZKJ A;  3C2P A;  4Q5B A;  2OT4 A;  2C12 A;  1XFX A;  1K90 A;  3LG1 A;  4MP7 A;  1Y8O A;  3OIB A;  4G97 A;  1R3B A;  4Q1O A;  4E01 A;  1PI1 A;  2CJ7 A;  3DJL A;  2RF7 A;  2DVL A;  1XFV A;  5B5W A;  2JIF A;  1XG2 B;  4E00 A;  5EZ3 A;  1SK6 A;  3MMO A;  2Q8F A;  3TTB A;  1RJ1 A;  3SF6 A;  2Q8I A;  4H81 A;  2XS8 A;  2EBA A;  3L1T A;  4KS9 A;  3X0X A;  3OWM A;  3C46 A;  3SWO A;  4ZYJ A;  1RJ4 A;  2BU5 A;  1RP3 A;  2A1T A;  1XFY A;  4RM7 A;  3C3L A;  4FF1 A;  1SC5 A;  1JQI A;  1GKX A;  2E80 A;  1OAH A;  3TOR A;  1Y0V A;  4LQS B;  4L38 A;  2EBH X;  3D1I A;  5J6A A;  2IX6 A;  2J7A A;  4JIO A;  4KSA A;  1QDB A;  5B6B A;  2VIG A;  2E0A A;  2ZDY A;  2BU7 A;  4FF4 A;  1XFW A;  3OWA A;  2OR0 A;  4X28 A; 
#chains in the Genus database with same CATH homology
 4Q5C A;  4XVX A;  4WJY A;  3NF4 A;  3EOM A;  2JBS A;  2UXW A;  5K3G A;  3MDD A;  2PG0 A;  2ZAF A;  1FS8 A;  1R2J A;  3GQT A;  1EGD A;  3M9V A;  4DOY A;  2ZO5 A;  2YYG A;  3BNJ A;  2YYM A;  3FCJ A;  3BNH A;  3HWC A;  3MKH A;  4W9U A;  4Q17 A;  1EGC A;  3MPI A;  4U83 A;  4G5E A;  3D9D A;  1T9G A;  1EGE A;  2WBI A;  4HR3 A;  5K3J A;  3D6B A;  1FS9 A;  4JEK A;  2VR0 A;  2JBR A;  3F29 A;  4KCF A;  3SXQ A;  3D9E A;  3R7K A;  1SIR A;  3UBR A;  4IRN A;  2YYI A;  4ZXV A;  3EON A;  4Q0T A;  3GM6 A;  1BUC A;  5K3I A;  2REH A;  3AFF A;  4M9A A;  3RKH A;  3LGQ A;  4L3X A;  3II9 A;  3BNF A;  2C0U A;  4NXL A;  4IV6 A;  2CX9 A;  2YYL A;  3AFE A;  4Q4U A;  1UDY A;  1IVH A;  1IS2 A;  3P4T A;  1GU6 A;  3MXL A;  4N5F A;  2YYK A;  1FS7 A;  2RFQ A;  2Z1Q A;  5K3H A;  1WS9 A;  2R0N A;  1W07 A;  3PFD A;  3D9G A;  1RX0 A;  3B96 A;  2JBT A;  2DDH A;  2D29 A;  2R0M A;  2E81 A;  2IX5 A;  1UKW A;  4L3Z A;  3GNC A;  3UU9 A;  3FO3 A;  3MDE A;  4O5M A;  3S7W A;  4P13 A;  3BNG A;  4OO2 A;  3SCE A;  4X28 C;  3MPJ A;  4KTO A;  2RDZ A;  3D9F A;  4L1F A;  1SIQ A;  4L3Y A;  3X0Y A;  2YYJ A;  1U8V A;  2FON A;  4Q5B A;  2OT4 A;  2C12 A;  3LG1 A;  3OIB A;  4Q1O A;  2RF7 A;  2DVL A;  2JIF A;  3MMO A;  3TTB A;  3SF6 A;  2EBA A;  3L1T A;  3X0X A;  3OWM A;  3SWO A;  4ZYJ A;  2A1T A;  4RM7 A;  1JQI A;  2E80 A;  1OAH A;  3TOR A;  4L38 A;  3D1I A;  2IX6 A;  2J7A A;  1QDB A;  2VIG A;  3OWA A;  2OR0 A;  4X28 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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