2DDHA

Crystal structure of acyl-coa oxidase complexed with 3-oh-dodecanoate
Total Genus 252
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
252
sequence length
655
structure length
622
Chain Sequence
MNPDLRKERASATFNPELITHILDGSPENTRRRREIENLILNDPDFQHEDYNFLTRSQRYEVAVKKSATMVKKMREYGISDPEEIMWFKNSVHRGHPEPLDLHLGMFLPTLLQATAEQQERFFMPAWNLEITGTYAQTEMGHGTHLRGLETTATYDPKTQEFILNSPTVTSIKWWPGGLGKTSNHAIVLAQLITQGECYGLHAFVVPIREIGTHKPLPGITVGDIGPKFGYEEMDNGYLKMDNYRIPRENMLMKYAQVKPDGTYVKPLMVFVRSFLVGNAAQSLSKACTIAIRYSAVRRQSEIKQSEPEPQILDFQTQQYKLFPLLATAYAFHFVGRYMKETYLRSELPELHALTAGLKAFTTWTANAGIEECRMACGGHGYSHSSGIPNIYVTFTPACTFEGENTVMMLQTARFLMKIYDQVRSGKLVGGMVSYLNDLPSVDINSLEGLTEAYKLRAARLVEIAAKNLQTHVSHRKSKEVAWNLTSVDLVRASEAHCHYVVVKVFSDKLPKIQDKAVQAVLRNLCLLYSLYGISQKGGDFLEGSIITGAQLSQVNARILELLTLIRPNAVALVDAFDFKDMTLGSVLGRYDGNVYENLFEWAKKSPLNKTEVHESYHKHLK
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Acyl-CoA oxidase
publication title Three-Dimensional Structure of Rat-Liver Acyl-CoA Oxidase in Complex with a Fatty Acid: Insights into Substrate-Recognition and Reactivity toward Molecular Oxygen.
pubmed doi rcsb
source organism Rattus norvegicus
molecule tags Oxidoreductase
total genus 252
structure length 622
sequence length 655
ec nomenclature ec 1.3.3.6: Acyl-CoA oxidase.
pdb deposition date 2006-01-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01756 ACOX Acyl-CoA oxidase
A PF02770 Acyl-CoA_dh_M Acyl-CoA dehydrogenase, middle domain
A PF14749 Acyl-CoA_ox_N Acyl-coenzyme A oxidase N-terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.540.10 Mainly Alpha Orthogonal Bundle Butyryl-Coa Dehydrogenase, subunit A; domain 1 Acyl-CoA dehydrogenase/oxidase, N-terminal domain 2ddhA01
1.20.140.10 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A; domain 3 Butyryl-CoA Dehydrogenase, subunit A, domain 3 2ddhA03
1.20.140.10 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A; domain 3 Butyryl-CoA Dehydrogenase, subunit A, domain 3 2ddhA04
2.40.110.10 Mainly Beta Beta Barrel Butyryl-CoA Dehydrogenase, subunit A; domain 2 Butyryl-CoA Dehydrogenase, subunit A, domain 2 2ddhA02
2IX5A 3HWCA 4Q1OA 1UKWA 3D9EA 3SWOA 2OR0A 4P13A 1IVHA 3AFFA 1EGEA 1IS2A 2RDZA 4KTOA 2EBAA 1SIRA 2YYJA 2DDHA 3PFDA 4IV6A 3MDDA 3D9FA 2J7AA 4L38A 1QDBA 2CX9A 2Z1QA 1JQIA 3GM6A 4IRNA 3B96A 3UU9A 1RX0A 3R7KA 4Q4UA 2OT4A 1U8VA 3D6BA 3OIBA 3SCEA 3D9DA 2ZO5A 4O5MA 4U83A 4Q5BA 2YYKA 4Q17A 2YYIA 4JEKA 3MDEA 2C12A 2C0UA 3MPIA 4NXLA 3M9VA 4RM7A 3BNGA 4L3XA 2YYGA 1BUCA 2E81A 4Q5CA 3AFEA 3SXQA 2VIGA 2JBSA 3D9GA 2YYLA 2JBRA 3MMOA 2VR0A 1FS8A 1SIQA 3X0YA 3NF4A 4L1FA 3FO3A 2ZAFA 2JBTA 2REHA 3TORA 4ZYJA 3LG1A 3RKHA 1EGDA 5K3HA 4L3ZA 3BNJA 4N5FA 1WS9A 4DOYA 1GU6A 2JIFA 4M9AA 1EGCA 5K3GA 3GQTA 3MXLA 2WBIA 4XVXA 3TTBA 2D29A 4ZXVA 3MPJA 5K3JA 2FONA 1OAHA 3BNFA 4OO2A 3II9A 2PG0A 1T9GA 4X28A 2E80A 2A1TA 3MKHA 4G5EA 3EOMA 1UDYA 3FCJA 3UBRA 2IX6A 4WJYA 3F29A 3OWAA 4Q0TA 2RFQA 2YYMA 2R0NA 2UXWA 4KCFA 4L3YA 3S7WA 1W07A 5K3IA 3P4TA 3GNCA 4W9UA 3L1TA 4X28C 1R2JA 1FS7A 3EONA 3SF6A 2RF7A 3OWMA 3D1IA 3BNHA 2DVLA 4HR3A 1FS9A 3LGQA 3X0XA 2R0MA
chains in the Genus database with same CATH superfamily
2IX5A 3HWCA 4H7QA 4LQSB 4Q1OA 4JIZA 4KSAA 1UKWA 4J1VA 3D9EA 3SWOA 2OR0A 3C2PA 4P13A 1IVHA 5M4MA 3AFFA 1S26A 1K93A 1Y0VA 1XFUA 2CJ6A 2R02A 1Y8PA 1EGEA 2AO2A 1IS2A 1XFVA 2RDZA 2YGWA 2EC5A 5BRKA 5M4PA 2VF1A 1PK0A 4KTOA 1PI1A 2EBAA 4MP7A 1SIRA 2YYJA 2DDHA 3PFDA 4P79A 3TZ2A 4IV6A 3MDDA 3D9FA 2BU8A 2J7AA 3C46A 4V26A 3TZ4A 3VKGA 2ZDXA 4L38A 1QDBA 2CX9A 2Z1QA 4E02A 1JQIA 3GM6A 4IRNA 3B96A 2OEVA 4F0XA 3UU9A 3VKHA 1RX0A 3R7KA 4Q4UA 2OT4A 1U8VA 3D6BA 3OIBA 2PO4A 5B5VA 3D9DA 2ZO5A 3X29A 2CJ8A 4LQQB 4O5MA 4U83A 4Q5BA 2YYKA 4Q17A 3Q24A 3CRKA 2BU6A 4KS9A 3VADA 3DJLA 4FF3A 2YYIA 4JEKA 2OEXA 4H85A 3MDEA 3Q0AA 2C12A 2C0UA 1Y8NA 4KSFA 2Q8HA 3TZ5A 3MPIA 4NXLA 5J6AA 2LFWA 3M9VA 4FF4A 1R3BA 1JM6A 4RM7A 1X90A 3BNGA 4L3XA 2YYGA 1BUCA 5M4NA 1X91A 3TZ0A 2E81A 2PNRA 5EZ3A 4Q5CA 3AFEA 4HKRA 3SXQA 2VIGA 3C3LA 2JBSA 3D9GA 2YYLA 4HKSA 2JBRA 2BU2A 3MMOA 5J71A 2VR0A 3U33A 2HJNA 2BTZA 1FS8A 1X8ZA 1XFZA 1SIQA 2Q8IA 3X0YA 2BU7A 5GJWE 4AKGA 3NF4A 4L1FA 2XS8A 3FO3A 2ZAFA 1XFYA 4MP2A 2JBTA 3KMLA 2REHA 2R03A 3TORA 4ZYJA 4AKIA 3LG1A 3RKHA 1EGDA 3N0RA 2FP1A 1XG2B 2GBBA 5K3HA 4L3ZA 3BNJA 4N5FA 2QR4A 3SCEA 1WS9A 4DOYA 1GU6A 2JIFA 3CRLA 4M9AA 1EGCA 5K3GA 2CJ4A 2OJQA 4E01A 5B5WA 2XS1A 5M4KA 3GQTA 3MXLA 2WBIA 4XVXA 1RJ1A 2CJ5A 4JIOA 3TTBA 2D29A 4ZXVA 2E0AA 3MPJA 5K3JA 5B6BA 4AI6A 2FONA 1K8TA 1OAHA 1K90A 2EBHX 3BNFA 2Q8FA 4OO2A 4QICA 3II9A 1SC5A 4MPNA 1SK6A 2XQRB 4V25A 5GJVE 2PG0A 1T9GA 4X28A 4AKHA 2E80A 2ZDYA 2A1TA 3MKHA 4G5EA 1XFXA 3EOMA 2FP2A 5BRMA 1UDYA 3FCJA 4G97A 2F6LA 3UBRA 4FZ4A 4FF1A 2IX6A 1LVCA 1Y8OA 2CJ7A 3D2RA 2AZEA 4WJYA 3F29A 3OWAA 4MPCA 4Q0TA 2RFQA 2YYMA 2R0NA 2UXWA 4KCFA 4L3YA 2Q8GA 3S7WA 3Q22A 1W07A 5K3IA 3P4TA 3GNCA 4DZYA 4W9UA 3L1TA 1RJ4A 4X28C 1R2JA 1FS7A 3EONA 4MPEA 3SF6A 4H81A 1GJVA 3CE2A 2RF7A 1XFWA 3Q23A 3OWMA 3D1IA 1RP3A 2ZKJA 2DVLA 4HR3A 1FS9A 2EBFX 3BNHA 1GKZA 4E00A 3LGQA 3X0XA 4FF2A 1GKXA 2R0MA 2BU5A 2R05A
chains in the Genus database with same CATH topology
2IX5A 3HWCA 4Q1OA 1UKWA 3D9EA 3SWOA 2OR0A 4P13A 1IVHA 3AFFA 1EGEA 1IS2A 2RDZA 4KTOA 2EBAA 1SIRA 2YYJA 2DDHA 3PFDA 4IV6A 3MDDA 3D9FA 2J7AA 4L38A 1QDBA 2CX9A 2Z1QA 1JQIA 3GM6A 4IRNA 3B96A 3UU9A 1RX0A 3R7KA 4Q4UA 2OT4A 1U8VA 3D6BA 3OIBA 3SCEA 3D9DA 2ZO5A 4O5MA 4U83A 4Q5BA 2YYKA 4Q17A 2YYIA 4JEKA 3MDEA 2C12A 2C0UA 3MPIA 4NXLA 3M9VA 4RM7A 3BNGA 4L3XA 2YYGA 1BUCA 2E81A 4Q5CA 3AFEA 3SXQA 2VIGA 2JBSA 3D9GA 2YYLA 2JBRA 3MMOA 2VR0A 1FS8A 1SIQA 3X0YA 3NF4A 4L1FA 3FO3A 2ZAFA 2JBTA 2REHA 3TORA 4ZYJA 3LG1A 3RKHA 1EGDA 5K3HA 4L3ZA 3BNJA 4N5FA 1WS9A 4DOYA 1GU6A 2JIFA 4M9AA 1EGCA 5K3GA 3GQTA 3MXLA 2WBIA 4XVXA 3TTBA 2D29A 4ZXVA 3MPJA 5K3JA 2FONA 1OAHA 3BNFA 4OO2A 3II9A 2PG0A 1T9GA 4X28A 2E80A 2A1TA 3MKHA 4G5EA 3EOMA 1UDYA 3FCJA 3UBRA 2IX6A 4WJYA 3F29A 3OWAA 4Q0TA 2RFQA 2YYMA 2R0NA 2UXWA 4KCFA 4L3YA 3S7WA 1W07A 5K3IA 3P4TA 3GNCA 4W9UA 3L1TA 4X28C 1R2JA 1FS7A 3EONA 3SF6A 2RF7A 3OWMA 3D1IA 3BNHA 2DVLA 4HR3A 1FS9A 3LGQA 3X0XA 2R0MA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2IX5 A;  3HWC A;  4Q1O A;  1UKW A;  3D9E A;  3SWO A;  2OR0 A;  4P13 A;  1IVH A;  3AFF A;  1EGE A;  1IS2 A;  2RDZ A;  4KTO A;  2EBA A;  1SIR A;  2YYJ A;  2DDH A;  3PFD A;  4IV6 A;  3MDD A;  3D9F A;  2J7A A;  4L38 A;  1QDB A;  2CX9 A;  2Z1Q A;  1JQI A;  3GM6 A;  4IRN A;  3B96 A;  3UU9 A;  1RX0 A;  3R7K A;  4Q4U A;  2OT4 A;  1U8V A;  3D6B A;  3OIB A;  3SCE A;  3D9D A;  2ZO5 A;  4O5M A;  4U83 A;  4Q5B A;  2YYK A;  4Q17 A;  2YYI A;  4JEK A;  3MDE A;  2C12 A;  2C0U A;  3MPI A;  4NXL A;  3M9V A;  4RM7 A;  3BNG A;  4L3X A;  2YYG A;  1BUC A;  2E81 A;  4Q5C A;  3AFE A;  3SXQ A;  2VIG A;  2JBS A;  3D9G A;  2YYL A;  2JBR A;  3MMO A;  2VR0 A;  1FS8 A;  1SIQ A;  3X0Y A;  3NF4 A;  4L1F A;  3FO3 A;  2ZAF A;  2JBT A;  2REH A;  3TOR A;  4ZYJ A;  3LG1 A;  3RKH A;  1EGD A;  5K3H A;  4L3Z A;  3BNJ A;  4N5F A;  1WS9 A;  4DOY A;  1GU6 A;  2JIF A;  4M9A A;  1EGC A;  5K3G A;  3GQT A;  3MXL A;  2WBI A;  4XVX A;  3TTB A;  2D29 A;  4ZXV A;  3MPJ A;  5K3J A;  2FON A;  1OAH A;  3BNF A;  4OO2 A;  3II9 A;  2PG0 A;  1T9G A;  4X28 A;  2E80 A;  2A1T A;  3MKH A;  4G5E A;  3EOM A;  1UDY A;  3FCJ A;  3UBR A;  2IX6 A;  4WJY A;  3F29 A;  3OWA A;  4Q0T A;  2RFQ A;  2YYM A;  2R0N A;  2UXW A;  4KCF A;  4L3Y A;  3S7W A;  1W07 A;  5K3I A;  3P4T A;  3GNC A;  4W9U A;  3L1T A;  4X28 C;  1R2J A;  1FS7 A;  3EON A;  3SF6 A;  2RF7 A;  3OWM A;  3D1I A;  3BNH A;  2DVL A;  4HR3 A;  1FS9 A;  3LGQ A;  3X0X A;  2R0M A; 
#chains in the Genus database with same CATH topology
 2IX5 A;  3HWC A;  4H7Q A;  4LQS B;  4Q1O A;  4JIZ A;  4KSA A;  1UKW A;  4J1V A;  3D9E A;  3SWO A;  2OR0 A;  3C2P A;  4P13 A;  1IVH A;  5M4M A;  3AFF A;  1S26 A;  1K93 A;  1Y0V A;  1XFU A;  2CJ6 A;  2R02 A;  1Y8P A;  1EGE A;  2AO2 A;  1IS2 A;  1XFV A;  2RDZ A;  2YGW A;  2EC5 A;  5BRK A;  5M4P A;  2VF1 A;  1PK0 A;  4KTO A;  1PI1 A;  2EBA A;  4MP7 A;  1SIR A;  2YYJ A;  2DDH A;  3PFD A;  4P79 A;  3TZ2 A;  4IV6 A;  3MDD A;  3D9F A;  2BU8 A;  2J7A A;  3C46 A;  4V26 A;  3TZ4 A;  3VKG A;  2ZDX A;  4L38 A;  1QDB A;  2CX9 A;  2Z1Q A;  4E02 A;  1JQI A;  3GM6 A;  4IRN A;  3B96 A;  2OEV A;  4F0X A;  3UU9 A;  3VKH A;  1RX0 A;  3R7K A;  4Q4U A;  2OT4 A;  1U8V A;  3D6B A;  3OIB A;  2PO4 A;  5B5V A;  3D9D A;  2ZO5 A;  3X29 A;  2CJ8 A;  4LQQ B;  4O5M A;  4U83 A;  4Q5B A;  2YYK A;  4Q17 A;  3Q24 A;  3CRK A;  2BU6 A;  4KS9 A;  3VAD A;  3DJL A;  4FF3 A;  2YYI A;  4JEK A;  2OEX A;  4H85 A;  3MDE A;  3Q0A A;  2C12 A;  2C0U A;  1Y8N A;  4KSF A;  2Q8H A;  3TZ5 A;  3MPI A;  4NXL A;  5J6A A;  2LFW A;  3M9V A;  4FF4 A;  1R3B A;  1JM6 A;  4RM7 A;  1X90 A;  3BNG A;  4L3X A;  2YYG A;  1BUC A;  5M4N A;  1X91 A;  3TZ0 A;  2E81 A;  2PNR A;  5EZ3 A;  4Q5C A;  3AFE A;  4HKR A;  3SXQ A;  2VIG A;  3C3L A;  2JBS A;  3D9G A;  2YYL A;  4HKS A;  2JBR A;  2BU2 A;  3MMO A;  5J71 A;  2VR0 A;  3U33 A;  2HJN A;  2BTZ A;  1FS8 A;  1X8Z A;  1XFZ A;  1SIQ A;  2Q8I A;  3X0Y A;  2BU7 A;  5GJW E;  4AKG A;  3NF4 A;  4L1F A;  2XS8 A;  3FO3 A;  2ZAF A;  1XFY A;  4MP2 A;  2JBT A;  3KML A;  2REH A;  2R03 A;  3TOR A;  4ZYJ A;  4AKI A;  3LG1 A;  3RKH A;  1EGD A;  3N0R A;  2FP1 A;  1XG2 B;  2GBB A;  5K3H A;  4L3Z A;  3BNJ A;  4N5F A;  2QR4 A;  3SCE A;  1WS9 A;  4DOY A;  1GU6 A;  2JIF A;  3CRL A;  4M9A A;  1EGC A;  5K3G A;  2CJ4 A;  2OJQ A;  4E01 A;  5B5W A;  2XS1 A;  5M4K A;  3GQT A;  3MXL A;  2WBI A;  4XVX A;  1RJ1 A;  2CJ5 A;  4JIO A;  3TTB A;  2D29 A;  4ZXV A;  2E0A A;  3MPJ A;  5K3J A;  5B6B A;  4AI6 A;  2FON A;  1K8T A;  1OAH A;  1K90 A;  2EBH X;  3BNF A;  2Q8F A;  4OO2 A;  4QIC A;  3II9 A;  1SC5 A;  4MPN A;  1SK6 A;  2XQR B;  4V25 A;  5GJV E;  2PG0 A;  1T9G A;  4X28 A;  4AKH A;  2E80 A;  2ZDY A;  2A1T A;  3MKH A;  4G5E A;  1XFX A;  3EOM A;  2FP2 A;  5BRM A;  1UDY A;  3FCJ A;  4G97 A;  2F6L A;  3UBR A;  4FZ4 A;  4FF1 A;  2IX6 A;  1LVC A;  1Y8O A;  2CJ7 A;  3D2R A;  2AZE A;  4WJY A;  3F29 A;  3OWA A;  4MPC A;  4Q0T A;  2RFQ A;  2YYM A;  2R0N A;  2UXW A;  4KCF A;  4L3Y A;  2Q8G A;  3S7W A;  3Q22 A;  1W07 A;  5K3I A;  3P4T A;  3GNC A;  4DZY A;  4W9U A;  3L1T A;  1RJ4 A;  4X28 C;  1R2J A;  1FS7 A;  3EON A;  4MPE A;  3SF6 A;  4H81 A;  1GJV A;  3CE2 A;  2RF7 A;  1XFW A;  3Q23 A;  3OWM A;  3D1I A;  1RP3 A;  2ZKJ A;  2DVL A;  4HR3 A;  1FS9 A;  2EBF X;  3BNH A;  1GKZ A;  4E00 A;  3LGQ A;  3X0X A;  4FF2 A;  1GKX A;  2R0M A;  2BU5 A;  2R05 A; 
#chains in the Genus database with same CATH homology
 2IX5 A;  3HWC A;  4Q1O A;  1UKW A;  3D9E A;  3SWO A;  2OR0 A;  4P13 A;  1IVH A;  3AFF A;  1EGE A;  1IS2 A;  2RDZ A;  4KTO A;  2EBA A;  1SIR A;  2YYJ A;  2DDH A;  3PFD A;  4IV6 A;  3MDD A;  3D9F A;  2J7A A;  4L38 A;  1QDB A;  2CX9 A;  2Z1Q A;  1JQI A;  3GM6 A;  4IRN A;  3B96 A;  3UU9 A;  1RX0 A;  3R7K A;  4Q4U A;  2OT4 A;  1U8V A;  3D6B A;  3OIB A;  3SCE A;  3D9D A;  2ZO5 A;  4O5M A;  4U83 A;  4Q5B A;  2YYK A;  4Q17 A;  2YYI A;  4JEK A;  3MDE A;  2C12 A;  2C0U A;  3MPI A;  4NXL A;  3M9V A;  4RM7 A;  3BNG A;  4L3X A;  2YYG A;  1BUC A;  2E81 A;  4Q5C A;  3AFE A;  3SXQ A;  2VIG A;  2JBS A;  3D9G A;  2YYL A;  2JBR A;  3MMO A;  2VR0 A;  1FS8 A;  1SIQ A;  3X0Y A;  3NF4 A;  4L1F A;  3FO3 A;  2ZAF A;  2JBT A;  2REH A;  3TOR A;  4ZYJ A;  3LG1 A;  3RKH A;  1EGD A;  5K3H A;  4L3Z A;  3BNJ A;  4N5F A;  1WS9 A;  4DOY A;  1GU6 A;  2JIF A;  4M9A A;  1EGC A;  5K3G A;  3GQT A;  3MXL A;  2WBI A;  4XVX A;  3TTB A;  2D29 A;  4ZXV A;  3MPJ A;  5K3J A;  2FON A;  1OAH A;  3BNF A;  4OO2 A;  3II9 A;  2PG0 A;  1T9G A;  4X28 A;  2E80 A;  2A1T A;  3MKH A;  4G5E A;  3EOM A;  1UDY A;  3FCJ A;  3UBR A;  2IX6 A;  4WJY A;  3F29 A;  3OWA A;  4Q0T A;  2RFQ A;  2YYM A;  2R0N A;  2UXW A;  4KCF A;  4L3Y A;  3S7W A;  1W07 A;  5K3I A;  3P4T A;  3GNC A;  4W9U A;  3L1T A;  4X28 C;  1R2J A;  1FS7 A;  3EON A;  3SF6 A;  2RF7 A;  3OWM A;  3D1I A;  3BNH A;  2DVL A;  4HR3 A;  1FS9 A;  3LGQ A;  3X0X A;  2R0M A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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