2DDHA

Crystal structure of acyl-coa oxidase complexed with 3-oh-dodecanoate
Total Genus 252
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
252
sequence length
655
structure length
622
Chain Sequence
MNPDLRKERASATFNPELITHILDGSPENTRRRREIENLILNDPDFQHEDYNFLTRSQRYEVAVKKSATMVKKMREYGISDPEEIMWFKNSVHRGHPEPLDLHLGMFLPTLLQATAEQQERFFMPAWNLEITGTYAQTEMGHGTHLRGLETTATYDPKTQEFILNSPTVTSIKWWPGGLGKTSNHAIVLAQLITQGECYGLHAFVVPIREIGTHKPLPGITVGDIGPKFGYEEMDNGYLKMDNYRIPRENMLMKYAQVKPDGTYVKPLMVFVRSFLVGNAAQSLSKACTIAIRYSAVRRQSEIKQSEPEPQILDFQTQQYKLFPLLATAYAFHFVGRYMKETYLRSELPELHALTAGLKAFTTWTANAGIEECRMACGGHGYSHSSGIPNIYVTFTPACTFEGENTVMMLQTARFLMKIYDQVRSGKLVGGMVSYLNDLPSVDINSLEGLTEAYKLRAARLVEIAAKNLQTHVSHRKSKEVAWNLTSVDLVRASEAHCHYVVVKVFSDKLPKIQDKAVQAVLRNLCLLYSLYGISQKGGDFLEGSIITGAQLSQVNARILELLTLIRPNAVALVDAFDFKDMTLGSVLGRYDGNVYENLFEWAKKSPLNKTEVHESYHKHLK
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
molecule keywords Acyl-CoA oxidase
publication title Three-Dimensional Structure of Rat-Liver Acyl-CoA Oxidase in Complex with a Fatty Acid: Insights into Substrate-Recognition and Reactivity toward Molecular Oxygen.
pubmed doi rcsb
source organism Rattus norvegicus
total genus 252
structure length 622
sequence length 655
ec nomenclature ec 1.3.3.6: Acyl-CoA oxidase.
pdb deposition date 2006-01-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01756 ACOX Acyl-CoA oxidase
A PF02770 Acyl-CoA_dh_M Acyl-CoA dehydrogenase, middle domain
A PF14749 Acyl-CoA_ox_N Acyl-coenzyme A oxidase N-terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.540.10 Mainly Alpha Orthogonal Bundle Butyryl-Coa Dehydrogenase, subunit A; domain 1 Acyl-CoA dehydrogenase/oxidase, N-terminal domain 2ddhA01
1.20.140.10 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A; domain 3 Butyryl-CoA Dehydrogenase, subunit A, domain 3 2ddhA03
1.20.140.10 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A; domain 3 Butyryl-CoA Dehydrogenase, subunit A, domain 3 2ddhA04
2.40.110.10 Mainly Beta Beta Barrel Butyryl-CoA Dehydrogenase, subunit A; domain 2 Butyryl-CoA Dehydrogenase, subunit A, domain 2 2ddhA02
2OR0A 1SIQA 2YYIA 1EGEA 4WJYA 4O5MA 1WS9A 2CX9A 1SIRA 2EBAA 4XVXA 3GNCA 2DVLA 4W9UA 3SCEA 4L3XA 4P13A 4L3ZA 4JEKA 2UXWA 1EGDA 1U8VA 2A1TA 3D1IA 1FS8A 4Q5BA 2C0UA 3SF6A 3GM6A 2YYKA 3BNGA 3HWCA 5K3HA 3BNFA 3D9GA 2IX6A 1FS9A 1QDBA 3SXQA 4Q17A 2RF7A 4Q0TA 1W07A 4ZYJA 3R7KA 1R2JA 2D29A 3PFDA 4Q4UA 3MPJA 1RX0A 3EONA 2WBIA 3II9A 2R0MA 2YYLA 3OWMA 3S7WA 1BUCA 3BNJA 3P4TA 3OWAA 4X28C 2YYJA 3OIBA 3MMOA 4DOYA 2PG0A 4KTOA 4L3YA 5K3GA 4Q1OA 2R0NA 4X28A 3AFFA 3LGQA 2JBTA 3TORA 3EOMA 3TTBA 3MDDA 4ZXVA 2C12A 3UU9A 3GQTA 3MXLA 4U83A 3MKHA 4KCFA 3F29A 3X0XA 2J7AA 3MPIA 2IX5A 1IS2A 3NF4A 2YYGA 3LG1A 4L1FA 2JBSA 4NXLA 1GU6A 4M9AA 3X0YA 3AFEA 1UKWA 3FCJA 4Q5CA 1JQIA 2RFQA 4OO2A 4L38A 2VIGA 3L1TA 3D9EA 4N5FA 3D6BA 3FO3A 2OT4A 3RKHA 2DDHA 2JBRA 2JIFA 4G5EA 2YYMA 1T9GA 3BNHA 1OAHA 3UBRA 2E81A 3M9VA 4RM7A 2FONA 2Z1QA 2ZAFA 4HR3A 4IV6A 1EGCA 2REHA 3SWOA 2E80A 1IVHA 1UDYA 1FS7A 3B96A 3D9FA 4IRNA 2RDZA 2ZO5A 5K3IA 2VR0A 3D9DA 3MDEA 5K3JA
chains in the Genus database with same CATH superfamily
2OR0A 1SIQA 1Y8NA 2CJ5A 1EGEA 2YYIA 5B5VA 4WJYA 4E00A 3Q23A 4O5MA 4FF3A 2YGWA 1PK0A 1XFVA 1WS9A 3VKGA 2Q8FA 3Q22A 1RJ4A 1K90A 3X29A 1RP3A 2CX9A 3DJLA 2XQRB 1SIRA 2ZKJA 2EBAA 4XVXA 1XFWA 2OJQA 3GNCA 2DVLA 4W9UA 3SCEA 3TZ0A 4L3XA 4AI6A 4P13A 4L3ZA 3TZ5A 4JEKA 4E01A 4AKGA 2R03A 2UXWA 1LVCA 1EGDA 1S26A 1U8VA 1Y8OA 5M4NA 2PO4A 2A1TA 2OEXA 4LQQB 3D1IA 1FS8A 4MPEA 4Q5BA 2Q8HA 4HKRA 2C0UA 3SF6A 1R3BA 4KSAA 1XFUA 3GM6A 2YYKA 4LQSB 3BNGA 3HWCA 4V26A 5K3HA 3BNFA 3D9GA 5EZ3A 2IX6A 1FS9A 2QR4A 1QDBA 2BU6A 3SXQA 1X8ZA 1SK6A 4Q17A 2RF7A 3CRKA 4Q0TA 5BRKA 1W07A 4ZYJA 1PI1A 3R7KA 1R2JA 2D29A 4P79A 3PFDA 2F6LA 4Q4UA 3MPJA 1RX0A 3VADA 2EBHX 3EONA 2WBIA 3II9A 2R0MA 4FF1A 4MPCA 2YYLA 3OWMA 3S7WA 1BUCA 1XFXA 3BNJA 3P4TA 3OWAA 4G97A 4AKIA 2BU2A 5B6BA 3C46A 4X28C 1X90A 2YYJA 4MPNA 3OIBA 3MMOA 3Q24A 4DOYA 4H81A 2PG0A 1JM6A 3TZ2A 4KTOA 1Y8PA 4L3YA 4HKSA 5J6AA 5K3GA 4Q1OA 2R0NA 2BU8A 4X28A 2ZDXA 3AFFA 2EC5A 2JBTA 3LGQA 4H7QA 3EOMA 3TORA 3MDDA 3TTBA 2VF1A 5GJVE 4ZXVA 2C12A 1K93A 2XS1A 5GJWE 3UU9A 5B5WA 2CJ4A 3GQTA 3MXLA 4U83A 2LFWA 3MKHA 4KCFA 1X91A 4F0XA 2BU5A 3F29A 4KSFA 3X0XA 3C2PA 2J7AA 2R02A 3MPIA 2IX5A 4JIZA 1IS2A 2FP1A 4J1VA 2BTZA 2OEVA 3NF4A 2YYGA 2EBFX 4KS9A 4MP2A 3LG1A 4DZYA 4L1FA 2JBSA 4E02A 4NXLA 1GKXA 1GU6A 2BU7A 3VKHA 4M9AA 3X0YA 3AFEA 1UKWA 3FCJA 4MP7A 1XFYA 4Q5CA 1JQIA 2RFQA 4OO2A 4L38A 2VIGA 3L1TA 3N0RA 3C3LA 3D9EA 3KMLA 1GJVA 4N5FA 1XG2B 3D6BA 3FO3A 2OT4A 3RKHA 2GBBA 4FF2A 2DDHA 2AZEA 2JBRA 2JIFA 4G5EA 1Y0VA 5BRMA 5M4KA 2YYMA 4FF4A 3CRLA 1T9GA 3BNHA 1OAHA 3UBRA 2XS8A 2CJ7A 4H85A 2E81A 3TZ4A 3M9VA 1GKZA 4RM7A 2FP2A 2CJ6A 2HJNA 2FONA 2R05A 2Z1QA 2ZAFA 4HR3A 3D2RA 4FZ4A 1RJ1A 4IV6A 1K8TA 1EGCA 5M4PA 2REHA 3SWOA 2Q8IA 2E80A 4QICA 5J71A 1IVHA 1UDYA 1FS7A 2CJ8A 4V25A 3B96A 3D9FA 4IRNA 2AO2A 2E0AA 2RDZA 2ZO5A 4JIOA 1SC5A 2Q8GA 5K3IA 3U33A 2VR0A 3Q0AA 3D9DA 3MDEA 5M4MA 4AKHA 2ZDYA 3CE2A 5K3JA 1XFZA 2PNRA
chains in the Genus database with same CATH topology
2OR0A 1SIQA 2YYIA 1EGEA 4WJYA 4O5MA 1WS9A 2CX9A 1SIRA 2EBAA 4XVXA 3GNCA 2DVLA 4W9UA 3SCEA 4L3XA 4P13A 4L3ZA 4JEKA 2UXWA 1EGDA 1U8VA 2A1TA 3D1IA 1FS8A 4Q5BA 2C0UA 3SF6A 3GM6A 2YYKA 3BNGA 3HWCA 5K3HA 3BNFA 3D9GA 2IX6A 1FS9A 1QDBA 3SXQA 4Q17A 2RF7A 4Q0TA 1W07A 4ZYJA 3R7KA 1R2JA 2D29A 3PFDA 4Q4UA 3MPJA 1RX0A 3EONA 2WBIA 3II9A 2R0MA 2YYLA 3OWMA 3S7WA 1BUCA 3BNJA 3P4TA 3OWAA 4X28C 2YYJA 3OIBA 3MMOA 4DOYA 2PG0A 4KTOA 4L3YA 5K3GA 4Q1OA 2R0NA 4X28A 3AFFA 3LGQA 2JBTA 3TORA 3EOMA 3TTBA 3MDDA 4ZXVA 2C12A 3UU9A 3GQTA 3MXLA 4U83A 3MKHA 4KCFA 3F29A 3X0XA 2J7AA 3MPIA 2IX5A 1IS2A 3NF4A 2YYGA 3LG1A 4L1FA 2JBSA 4NXLA 1GU6A 4M9AA 3X0YA 3AFEA 1UKWA 3FCJA 4Q5CA 1JQIA 2RFQA 4OO2A 4L38A 2VIGA 3L1TA 3D9EA 4N5FA 3D6BA 3FO3A 2OT4A 3RKHA 2DDHA 2JBRA 2JIFA 4G5EA 2YYMA 1T9GA 3BNHA 1OAHA 3UBRA 2E81A 3M9VA 4RM7A 2FONA 2Z1QA 2ZAFA 4HR3A 4IV6A 1EGCA 2REHA 3SWOA 2E80A 1IVHA 1UDYA 1FS7A 3B96A 3D9FA 4IRNA 2RDZA 2ZO5A 5K3IA 2VR0A 3D9DA 3MDEA 5K3JA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2OR0 A;  1SIQ A;  2YYI A;  1EGE A;  4WJY A;  4O5M A;  1WS9 A;  2CX9 A;  1SIR A;  2EBA A;  4XVX A;  3GNC A;  2DVL A;  4W9U A;  3SCE A;  4L3X A;  4P13 A;  4L3Z A;  4JEK A;  2UXW A;  1EGD A;  1U8V A;  2A1T A;  3D1I A;  1FS8 A;  4Q5B A;  2C0U A;  3SF6 A;  3GM6 A;  2YYK A;  3BNG A;  3HWC A;  5K3H A;  3BNF A;  3D9G A;  2IX6 A;  1FS9 A;  1QDB A;  3SXQ A;  4Q17 A;  2RF7 A;  4Q0T A;  1W07 A;  4ZYJ A;  3R7K A;  1R2J A;  2D29 A;  3PFD A;  4Q4U A;  3MPJ A;  1RX0 A;  3EON A;  2WBI A;  3II9 A;  2R0M A;  2YYL A;  3OWM A;  3S7W A;  1BUC A;  3BNJ A;  3P4T A;  3OWA A;  4X28 C;  2YYJ A;  3OIB A;  3MMO A;  4DOY A;  2PG0 A;  4KTO A;  4L3Y A;  5K3G A;  4Q1O A;  2R0N A;  4X28 A;  3AFF A;  3LGQ A;  2JBT A;  3TOR A;  3EOM A;  3TTB A;  3MDD A;  4ZXV A;  2C12 A;  3UU9 A;  3GQT A;  3MXL A;  4U83 A;  3MKH A;  4KCF A;  3F29 A;  3X0X A;  2J7A A;  3MPI A;  2IX5 A;  1IS2 A;  3NF4 A;  2YYG A;  3LG1 A;  4L1F A;  2JBS A;  4NXL A;  1GU6 A;  4M9A A;  3X0Y A;  3AFE A;  1UKW A;  3FCJ A;  4Q5C A;  1JQI A;  2RFQ A;  4OO2 A;  4L38 A;  2VIG A;  3L1T A;  3D9E A;  4N5F A;  3D6B A;  3FO3 A;  2OT4 A;  3RKH A;  2DDH A;  2JBR A;  2JIF A;  4G5E A;  2YYM A;  1T9G A;  3BNH A;  1OAH A;  3UBR A;  2E81 A;  3M9V A;  4RM7 A;  2FON A;  2Z1Q A;  2ZAF A;  4HR3 A;  4IV6 A;  1EGC A;  2REH A;  3SWO A;  2E80 A;  1IVH A;  1UDY A;  1FS7 A;  3B96 A;  3D9F A;  4IRN A;  2RDZ A;  2ZO5 A;  5K3I A;  2VR0 A;  3D9D A;  3MDE A;  5K3J A; 
#chains in the Genus database with same CATH topology
 2OR0 A;  1SIQ A;  1Y8N A;  2CJ5 A;  1EGE A;  2YYI A;  5B5V A;  4WJY A;  4E00 A;  3Q23 A;  4O5M A;  4FF3 A;  2YGW A;  1PK0 A;  1XFV A;  1WS9 A;  3VKG A;  2Q8F A;  3Q22 A;  1RJ4 A;  1K90 A;  3X29 A;  1RP3 A;  2CX9 A;  3DJL A;  2XQR B;  1SIR A;  2ZKJ A;  2EBA A;  4XVX A;  1XFW A;  2OJQ A;  3GNC A;  2DVL A;  4W9U A;  3SCE A;  3TZ0 A;  4L3X A;  4AI6 A;  4P13 A;  4L3Z A;  3TZ5 A;  4JEK A;  4E01 A;  4AKG A;  2R03 A;  2UXW A;  1LVC A;  1EGD A;  1S26 A;  1U8V A;  1Y8O A;  5M4N A;  2PO4 A;  2A1T A;  2OEX A;  4LQQ B;  3D1I A;  1FS8 A;  4MPE A;  4Q5B A;  2Q8H A;  4HKR A;  2C0U A;  3SF6 A;  1R3B A;  4KSA A;  1XFU A;  3GM6 A;  2YYK A;  4LQS B;  3BNG A;  3HWC A;  4V26 A;  5K3H A;  3BNF A;  3D9G A;  5EZ3 A;  2IX6 A;  1FS9 A;  2QR4 A;  1QDB A;  2BU6 A;  3SXQ A;  1X8Z A;  1SK6 A;  4Q17 A;  2RF7 A;  3CRK A;  4Q0T A;  5BRK A;  1W07 A;  4ZYJ A;  1PI1 A;  3R7K A;  1R2J A;  2D29 A;  4P79 A;  3PFD A;  2F6L A;  4Q4U A;  3MPJ A;  1RX0 A;  3VAD A;  2EBH X;  3EON A;  2WBI A;  3II9 A;  2R0M A;  4FF1 A;  4MPC A;  2YYL A;  3OWM A;  3S7W A;  1BUC A;  1XFX A;  3BNJ A;  3P4T A;  3OWA A;  4G97 A;  4AKI A;  2BU2 A;  5B6B A;  3C46 A;  4X28 C;  1X90 A;  2YYJ A;  4MPN A;  3OIB A;  3MMO A;  3Q24 A;  4DOY A;  4H81 A;  2PG0 A;  1JM6 A;  3TZ2 A;  4KTO A;  1Y8P A;  4L3Y A;  4HKS A;  5J6A A;  5K3G A;  4Q1O A;  2R0N A;  2BU8 A;  4X28 A;  2ZDX A;  3AFF A;  2EC5 A;  2JBT A;  3LGQ A;  4H7Q A;  3EOM A;  3TOR A;  3MDD A;  3TTB A;  2VF1 A;  5GJV E;  4ZXV A;  2C12 A;  1K93 A;  2XS1 A;  5GJW E;  3UU9 A;  5B5W A;  2CJ4 A;  3GQT A;  3MXL A;  4U83 A;  2LFW A;  3MKH A;  4KCF A;  1X91 A;  4F0X A;  2BU5 A;  3F29 A;  4KSF A;  3X0X A;  3C2P A;  2J7A A;  2R02 A;  3MPI A;  2IX5 A;  4JIZ A;  1IS2 A;  2FP1 A;  4J1V A;  2BTZ A;  2OEV A;  3NF4 A;  2YYG A;  2EBF X;  4KS9 A;  4MP2 A;  3LG1 A;  4DZY A;  4L1F A;  2JBS A;  4E02 A;  4NXL A;  1GKX A;  1GU6 A;  2BU7 A;  3VKH A;  4M9A A;  3X0Y A;  3AFE A;  1UKW A;  3FCJ A;  4MP7 A;  1XFY A;  4Q5C A;  1JQI A;  2RFQ A;  4OO2 A;  4L38 A;  2VIG A;  3L1T A;  3N0R A;  3C3L A;  3D9E A;  3KML A;  1GJV A;  4N5F A;  1XG2 B;  3D6B A;  3FO3 A;  2OT4 A;  3RKH A;  2GBB A;  4FF2 A;  2DDH A;  2AZE A;  2JBR A;  2JIF A;  4G5E A;  1Y0V A;  5BRM A;  5M4K A;  2YYM A;  4FF4 A;  3CRL A;  1T9G A;  3BNH A;  1OAH A;  3UBR A;  2XS8 A;  2CJ7 A;  4H85 A;  2E81 A;  3TZ4 A;  3M9V A;  1GKZ A;  4RM7 A;  2FP2 A;  2CJ6 A;  2HJN A;  2FON A;  2R05 A;  2Z1Q A;  2ZAF A;  4HR3 A;  3D2R A;  4FZ4 A;  1RJ1 A;  4IV6 A;  1K8T A;  1EGC A;  5M4P A;  2REH A;  3SWO A;  2Q8I A;  2E80 A;  4QIC A;  5J71 A;  1IVH A;  1UDY A;  1FS7 A;  2CJ8 A;  4V25 A;  3B96 A;  3D9F A;  4IRN A;  2AO2 A;  2E0A A;  2RDZ A;  2ZO5 A;  4JIO A;  1SC5 A;  2Q8G A;  5K3I A;  3U33 A;  2VR0 A;  3Q0A A;  3D9D A;  3MDE A;  5M4M A;  4AKH A;  2ZDY A;  3CE2 A;  5K3J A;  1XFZ A;  2PNR A; 
#chains in the Genus database with same CATH homology
 2OR0 A;  1SIQ A;  2YYI A;  1EGE A;  4WJY A;  4O5M A;  1WS9 A;  2CX9 A;  1SIR A;  2EBA A;  4XVX A;  3GNC A;  2DVL A;  4W9U A;  3SCE A;  4L3X A;  4P13 A;  4L3Z A;  4JEK A;  2UXW A;  1EGD A;  1U8V A;  2A1T A;  3D1I A;  1FS8 A;  4Q5B A;  2C0U A;  3SF6 A;  3GM6 A;  2YYK A;  3BNG A;  3HWC A;  5K3H A;  3BNF A;  3D9G A;  2IX6 A;  1FS9 A;  1QDB A;  3SXQ A;  4Q17 A;  2RF7 A;  4Q0T A;  1W07 A;  4ZYJ A;  3R7K A;  1R2J A;  2D29 A;  3PFD A;  4Q4U A;  3MPJ A;  1RX0 A;  3EON A;  2WBI A;  3II9 A;  2R0M A;  2YYL A;  3OWM A;  3S7W A;  1BUC A;  3BNJ A;  3P4T A;  3OWA A;  4X28 C;  2YYJ A;  3OIB A;  3MMO A;  4DOY A;  2PG0 A;  4KTO A;  4L3Y A;  5K3G A;  4Q1O A;  2R0N A;  4X28 A;  3AFF A;  3LGQ A;  2JBT A;  3TOR A;  3EOM A;  3TTB A;  3MDD A;  4ZXV A;  2C12 A;  3UU9 A;  3GQT A;  3MXL A;  4U83 A;  3MKH A;  4KCF A;  3F29 A;  3X0X A;  2J7A A;  3MPI A;  2IX5 A;  1IS2 A;  3NF4 A;  2YYG A;  3LG1 A;  4L1F A;  2JBS A;  4NXL A;  1GU6 A;  4M9A A;  3X0Y A;  3AFE A;  1UKW A;  3FCJ A;  4Q5C A;  1JQI A;  2RFQ A;  4OO2 A;  4L38 A;  2VIG A;  3L1T A;  3D9E A;  4N5F A;  3D6B A;  3FO3 A;  2OT4 A;  3RKH A;  2DDH A;  2JBR A;  2JIF A;  4G5E A;  2YYM A;  1T9G A;  3BNH A;  1OAH A;  3UBR A;  2E81 A;  3M9V A;  4RM7 A;  2FON A;  2Z1Q A;  2ZAF A;  4HR3 A;  4IV6 A;  1EGC A;  2REH A;  3SWO A;  2E80 A;  1IVH A;  1UDY A;  1FS7 A;  3B96 A;  3D9F A;  4IRN A;  2RDZ A;  2ZO5 A;  5K3I A;  2VR0 A;  3D9D A;  3MDE A;  5K3J A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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