4ZYJA

Streptomyces peucetius nitrososynthase dnmz in tdp-bound state
Total Genus 143
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
143
sequence length
395
structure length
388
Chain Sequence
GVLADNGLCEPKTPAGRRLLDLLERYLPALEAESRDNDREATLPVHLFDRMRKEGVLGATVPEDLGGLGVHSLHDVALALARIAGRDAGVALALHMQFSRGLTLDFEWRHGAPSTRPLAEDLLRQMGAGEAVICGAVKDVRGTTVLTRDGSYRLNGRKTLVSMAGIATHYVVSTRLEEAPVRLAAPVVARTTPGLTVLDNWDGMGMRSSGSVDIVFDGCPVDRDRVLPRGEPDDAALAGQTVSSIAMLGIYVGIAEAARRIALTELRRRGGAPAGVRTTVAEIDARLFALHTAVASALTTADRLADDLSGDLAARGRAMMTPFQYAKLLVNRHSVGVVDDCLMLVGGAGYSNSHPLARLYRDVRAGGFMHPYNFTDGVDYLSEVALGR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords DnmZ
publication title Structure of DnmZ, a nitrososynthase in the Streptomyces peucetius anthracycline biosynthetic pathway.
pubmed doi rcsb
source organism Streptomyces peucetius
total genus 143
structure length 388
sequence length 395
chains with identical sequence B, C, D
ec nomenclature ec 1.14.13.187: L-evernosamine nitrososynthase.
pdb deposition date 2015-05-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00441 Acyl-CoA_dh_1 Acyl-CoA dehydrogenase, C-terminal domain
A PF02770 Acyl-CoA_dh_M Acyl-CoA dehydrogenase, middle domain
A PF02771 Acyl-CoA_dh_N Acyl-CoA dehydrogenase, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.540.10 Mainly Alpha Orthogonal Bundle Butyryl-Coa Dehydrogenase, subunit A; domain 1 Acyl-CoA dehydrogenase/oxidase, N-terminal domain 4zyjA01
1.20.140.10 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A; domain 3 Butyryl-CoA Dehydrogenase, subunit A, domain 3 4zyjA03
2.40.110.10 Mainly Beta Beta Barrel Butyryl-CoA Dehydrogenase, subunit A; domain 2 Butyryl-CoA Dehydrogenase, subunit A, domain 2 4zyjA02
3UBRA 3PFDA 1BUCA 4G5EA 3AFFA 3MPIA 1OAHA 4XVXA 3SWOA 4U83A 3MKHA 2WBIA 1SIQA 1EGCA 4N5FA 2OR0A 4L3YA 2JIFA 3RKHA 4ZYJA 1SIRA 3D9DA 3R7KA 2C12A 1WS9A 2VIGA 3EONA 1W07A 2IX5A 1U8VA 2EBAA 1IS2A 4Q1OA 3UU9A 2JBTA 1R2JA 2OT4A 3SXQA 3S7WA 4RM7A 3D6BA 3LG1A 3FCJA 1UDYA 3MDDA 4WJYA 1EGEA 2UXWA 3B96A 3SCEA 2DDHA 4P13A 4Q5CA 4X28A 2JBSA 1UKWA 2C0UA 3OIBA 3LGQA 2VR0A 2E81A 3GNCA 4Q0TA 3X0YA 2YYKA 4Q4UA 3D9FA 5K3GA 2R0MA 4ZXVA 3EOMA 2IX6A 1T9GA 2REHA 3D1IA 2R0NA 2YYJA 4L1FA 4KCFA 2RF7A 4Q5BA 3FO3A 4OO2A 3X0XA 5K3HA 4L38A 4JEKA 1FS8A 3OWMA 4L3ZA 3L1TA 2CX9A 3BNJA 3D9GA 4HR3A 1GU6A 5K3JA 3HWCA 4X28C 1FS9A 2YYMA 3BNFA 2ZAFA 3BNHA 3NF4A 2DVLA 2PG0A 4IRNA 2D29A 3P4TA 2ZO5A 4Q17A 4M9AA 1QDBA 4KTOA 3BNGA 3TORA 2RFQA 3MXLA 4DOYA 3MMOA 3GQTA 3M9VA 2RDZA 2JBRA 3F29A 3GM6A 2J7AA 4IV6A 2YYLA 4L3XA 1FS7A 3AFEA 4NXLA 4W9UA 3MDEA 3II9A 1JQIA 4O5MA 2Z1QA 2YYIA 1RX0A 3D9EA 1IVHA 5K3IA 2E80A 2A1TA 2YYGA 3TTBA 3OWAA 1EGDA 3SF6A 3MPJA 2FONA
chains in the Genus database with same CATH superfamily
3UBRA 2R02A 4KSFA 4H85A 3PFDA 1BUCA 4G97A 2BU6A 2OEXA 3TZ2A 4G5EA 4E02A 3AFFA 2BU8A 1JM6A 5M4PA 3MPIA 2CJ7A 2OJQA 1OAHA 4XVXA 3SWOA 4E01A 4U83A 1Y0VA 3MKHA 2WBIA 1SIQA 2ZDYA 1EGCA 3CRKA 4MP2A 4N5FA 3N0RA 1Y8PA 2OR0A 4L3YA 1GJVA 1PK0A 2JIFA 5M4MA 4AI6A 3D2RA 3RKHA 4ZYJA 1LVCA 4HKRA 5BRKA 4JIOA 1SIRA 3TZ5A 3D9DA 1R3BA 1XFWA 4MPNA 3R7KA 1XFZA 2F6LA 2HJNA 3TZ4A 3Q22A 2C12A 1WS9A 1SK6A 2VIGA 5GJWE 2Q8GA 3EONA 1XFUA 4HKSA 1W07A 3C2PA 2IX5A 1U8VA 2YGWA 2PO4A 2Q8IA 2EBAA 1IS2A 4Q1OA 3UU9A 2AO2A 3VKGA 2ZDXA 2CJ4A 4MPEA 2JBTA 1R2JA 2CJ6A 2OT4A 3VKHA 3SXQA 3S7WA 4RM7A 3D6BA 1X8ZA 2R03A 4LQQB 1X91A 2CJ5A 1RJ4A 3LG1A 3FCJA 1RJ1A 1UDYA 3MDDA 4FF4A 4WJYA 1EGEA 2PNRA 2UXWA 3B96A 2ZKJA 3SCEA 2DDHA 4P13A 1GKXA 4Q5CA 4X28A 3C3LA 1K8TA 3C46A 4V25A 3KMLA 2JBSA 1UKWA 2C0UA 3OIBA 2QR4A 3LGQA 2E0AA 4QICA 3U33A 2VR0A 1K93A 3DJLA 4F0XA 1SC5A 1XFXA 2E81A 3GNCA 4Q0TA 4H7QA 3X0YA 4MPCA 2YYKA 4Q4UA 3D9FA 5K3GA 2R0MA 4ZXVA 3EOMA 4P79A 2XS1A 2IX6A 1T9GA 2REHA 3D1IA 2R0NA 1XG2B 2YYJA 5M4NA 3VADA 2FP2A 2EBFX 4L1FA 4J1VA 4AKHA 4KCFA 3CE2A 2RF7A 4Q5BA 4AKIA 3FO3A 4OO2A 3X0XA 5K3HA 2BU5A 4L38A 4JEKA 1PI1A 1Y8OA 1FS8A 3OWMA 4L3ZA 3L1TA 2VF1A 4JIZA 4FZ4A 1XFYA 3TZ0A 2CX9A 4E00A 3BNJA 3D9GA 4AKGA 4HR3A 1GKZA 1GU6A 5K3JA 2BU7A 2BTZA 2R05A 3HWCA 4V26A 5M4KA 2CJ8A 4X28C 1FS9A 1X90A 2YYMA 2ZAFA 3BNFA 2AZEA 1S26A 3BNHA 4KS9A 3NF4A 2DVLA 2PG0A 4IRNA 5B5WA 2D29A 1K90A 3P4TA 2ZO5A 4Q17A 4M9AA 2FP1A 1QDBA 4KTOA 3BNGA 3CRLA 5B5VA 2RFQA 3TORA 3MXLA 4DOYA 2BU2A 3MMOA 3Q23A 2XQRB 5B6BA 2XS8A 2EC5A 4LQSB 5J6AA 3GQTA 3M9VA 1RP3A 2RDZA 2JBRA 2Q8FA 3F29A 2OEVA 3GM6A 2GBBA 2LFWA 5GJVE 2J7AA 2Q8HA 3Q24A 4IV6A 4DZYA 2YYLA 4L3XA 5J71A 4KSAA 1FS7A 3AFEA 3X29A 4NXLA 4W9UA 3MDEA 3II9A 1JQIA 4O5MA 5BRMA 2Z1QA 1XFVA 2YYIA 1RX0A 1Y8NA 3D9EA 1IVHA 5K3IA 2E80A 2A1TA 2YYGA 4MP7A 4FF3A 4FF2A 3TTBA 3OWAA 1EGDA 3Q0AA 3SF6A 5EZ3A 3MPJA 4H81A 4FF1A 2EBHX 2FONA
chains in the Genus database with same CATH topology
3UBRA 3PFDA 1BUCA 4G5EA 3AFFA 3MPIA 1OAHA 4XVXA 3SWOA 4U83A 3MKHA 2WBIA 1SIQA 1EGCA 4N5FA 2OR0A 4L3YA 2JIFA 3RKHA 4ZYJA 1SIRA 3D9DA 3R7KA 2C12A 1WS9A 2VIGA 3EONA 1W07A 2IX5A 1U8VA 2EBAA 1IS2A 4Q1OA 3UU9A 2JBTA 1R2JA 2OT4A 3SXQA 3S7WA 4RM7A 3D6BA 3LG1A 3FCJA 1UDYA 3MDDA 4WJYA 1EGEA 2UXWA 3B96A 3SCEA 2DDHA 4P13A 4Q5CA 4X28A 2JBSA 1UKWA 2C0UA 3OIBA 3LGQA 2VR0A 2E81A 3GNCA 4Q0TA 3X0YA 2YYKA 4Q4UA 3D9FA 5K3GA 2R0MA 4ZXVA 3EOMA 2IX6A 1T9GA 2REHA 3D1IA 2R0NA 2YYJA 4L1FA 4KCFA 2RF7A 4Q5BA 3FO3A 4OO2A 3X0XA 5K3HA 4L38A 4JEKA 1FS8A 3OWMA 4L3ZA 3L1TA 2CX9A 3BNJA 3D9GA 4HR3A 1GU6A 5K3JA 3HWCA 4X28C 1FS9A 2YYMA 3BNFA 2ZAFA 3BNHA 3NF4A 2DVLA 2PG0A 4IRNA 2D29A 3P4TA 2ZO5A 4Q17A 4M9AA 1QDBA 4KTOA 3BNGA 3TORA 2RFQA 3MXLA 4DOYA 3MMOA 3GQTA 3M9VA 2RDZA 2JBRA 3F29A 3GM6A 2J7AA 4IV6A 2YYLA 4L3XA 1FS7A 3AFEA 4NXLA 4W9UA 3MDEA 3II9A 1JQIA 4O5MA 2Z1QA 2YYIA 1RX0A 3D9EA 1IVHA 5K3IA 2E80A 2A1TA 2YYGA 3TTBA 3OWAA 1EGDA 3SF6A 3MPJA 2FONA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3UBR A;  3PFD A;  1BUC A;  4G5E A;  3AFF A;  3MPI A;  1OAH A;  4XVX A;  3SWO A;  4U83 A;  3MKH A;  2WBI A;  1SIQ A;  1EGC A;  4N5F A;  2OR0 A;  4L3Y A;  2JIF A;  3RKH A;  4ZYJ A;  1SIR A;  3D9D A;  3R7K A;  2C12 A;  1WS9 A;  2VIG A;  3EON A;  1W07 A;  2IX5 A;  1U8V A;  2EBA A;  1IS2 A;  4Q1O A;  3UU9 A;  2JBT A;  1R2J A;  2OT4 A;  3SXQ A;  3S7W A;  4RM7 A;  3D6B A;  3LG1 A;  3FCJ A;  1UDY A;  3MDD A;  4WJY A;  1EGE A;  2UXW A;  3B96 A;  3SCE A;  2DDH A;  4P13 A;  4Q5C A;  4X28 A;  2JBS A;  1UKW A;  2C0U A;  3OIB A;  3LGQ A;  2VR0 A;  2E81 A;  3GNC A;  4Q0T A;  3X0Y A;  2YYK A;  4Q4U A;  3D9F A;  5K3G A;  2R0M A;  4ZXV A;  3EOM A;  2IX6 A;  1T9G A;  2REH A;  3D1I A;  2R0N A;  2YYJ A;  4L1F A;  4KCF A;  2RF7 A;  4Q5B A;  3FO3 A;  4OO2 A;  3X0X A;  5K3H A;  4L38 A;  4JEK A;  1FS8 A;  3OWM A;  4L3Z A;  3L1T A;  2CX9 A;  3BNJ A;  3D9G A;  4HR3 A;  1GU6 A;  5K3J A;  3HWC A;  4X28 C;  1FS9 A;  2YYM A;  3BNF A;  2ZAF A;  3BNH A;  3NF4 A;  2DVL A;  2PG0 A;  4IRN A;  2D29 A;  3P4T A;  2ZO5 A;  4Q17 A;  4M9A A;  1QDB A;  4KTO A;  3BNG A;  3TOR A;  2RFQ A;  3MXL A;  4DOY A;  3MMO A;  3GQT A;  3M9V A;  2RDZ A;  2JBR A;  3F29 A;  3GM6 A;  2J7A A;  4IV6 A;  2YYL A;  4L3X A;  1FS7 A;  3AFE A;  4NXL A;  4W9U A;  3MDE A;  3II9 A;  1JQI A;  4O5M A;  2Z1Q A;  2YYI A;  1RX0 A;  3D9E A;  1IVH A;  5K3I A;  2E80 A;  2A1T A;  2YYG A;  3TTB A;  3OWA A;  1EGD A;  3SF6 A;  3MPJ A;  2FON A; 
#chains in the Genus database with same CATH topology
 3UBR A;  2R02 A;  4KSF A;  4H85 A;  3PFD A;  1BUC A;  4G97 A;  2BU6 A;  2OEX A;  3TZ2 A;  4G5E A;  4E02 A;  3AFF A;  2BU8 A;  1JM6 A;  5M4P A;  3MPI A;  2CJ7 A;  2OJQ A;  1OAH A;  4XVX A;  3SWO A;  4E01 A;  4U83 A;  1Y0V A;  3MKH A;  2WBI A;  1SIQ A;  2ZDY A;  1EGC A;  3CRK A;  4MP2 A;  4N5F A;  3N0R A;  1Y8P A;  2OR0 A;  4L3Y A;  1GJV A;  1PK0 A;  2JIF A;  5M4M A;  4AI6 A;  3D2R A;  3RKH A;  4ZYJ A;  1LVC A;  4HKR A;  5BRK A;  4JIO A;  1SIR A;  3TZ5 A;  3D9D A;  1R3B A;  1XFW A;  4MPN A;  3R7K A;  1XFZ A;  2F6L A;  2HJN A;  3TZ4 A;  3Q22 A;  2C12 A;  1WS9 A;  1SK6 A;  2VIG A;  5GJW E;  2Q8G A;  3EON A;  1XFU A;  4HKS A;  1W07 A;  3C2P A;  2IX5 A;  1U8V A;  2YGW A;  2PO4 A;  2Q8I A;  2EBA A;  1IS2 A;  4Q1O A;  3UU9 A;  2AO2 A;  3VKG A;  2ZDX A;  2CJ4 A;  4MPE A;  2JBT A;  1R2J A;  2CJ6 A;  2OT4 A;  3VKH A;  3SXQ A;  3S7W A;  4RM7 A;  3D6B A;  1X8Z A;  2R03 A;  4LQQ B;  1X91 A;  2CJ5 A;  1RJ4 A;  3LG1 A;  3FCJ A;  1RJ1 A;  1UDY A;  3MDD A;  4FF4 A;  4WJY A;  1EGE A;  2PNR A;  2UXW A;  3B96 A;  2ZKJ A;  3SCE A;  2DDH A;  4P13 A;  1GKX A;  4Q5C A;  4X28 A;  3C3L A;  1K8T A;  3C46 A;  4V25 A;  3KML A;  2JBS A;  1UKW A;  2C0U A;  3OIB A;  2QR4 A;  3LGQ A;  2E0A A;  4QIC A;  3U33 A;  2VR0 A;  1K93 A;  3DJL A;  4F0X A;  1SC5 A;  1XFX A;  2E81 A;  3GNC A;  4Q0T A;  4H7Q A;  3X0Y A;  4MPC A;  2YYK A;  4Q4U A;  3D9F A;  5K3G A;  2R0M A;  4ZXV A;  3EOM A;  4P79 A;  2XS1 A;  2IX6 A;  1T9G A;  2REH A;  3D1I A;  2R0N A;  1XG2 B;  2YYJ A;  5M4N A;  3VAD A;  2FP2 A;  2EBF X;  4L1F A;  4J1V A;  4AKH A;  4KCF A;  3CE2 A;  2RF7 A;  4Q5B A;  4AKI A;  3FO3 A;  4OO2 A;  3X0X A;  5K3H A;  2BU5 A;  4L38 A;  4JEK A;  1PI1 A;  1Y8O A;  1FS8 A;  3OWM A;  4L3Z A;  3L1T A;  2VF1 A;  4JIZ A;  4FZ4 A;  1XFY A;  3TZ0 A;  2CX9 A;  4E00 A;  3BNJ A;  3D9G A;  4AKG A;  4HR3 A;  1GKZ A;  1GU6 A;  5K3J A;  2BU7 A;  2BTZ A;  2R05 A;  3HWC A;  4V26 A;  5M4K A;  2CJ8 A;  4X28 C;  1FS9 A;  1X90 A;  2YYM A;  2ZAF A;  3BNF A;  2AZE A;  1S26 A;  3BNH A;  4KS9 A;  3NF4 A;  2DVL A;  2PG0 A;  4IRN A;  5B5W A;  2D29 A;  1K90 A;  3P4T A;  2ZO5 A;  4Q17 A;  4M9A A;  2FP1 A;  1QDB A;  4KTO A;  3BNG A;  3CRL A;  5B5V A;  2RFQ A;  3TOR A;  3MXL A;  4DOY A;  2BU2 A;  3MMO A;  3Q23 A;  2XQR B;  5B6B A;  2XS8 A;  2EC5 A;  4LQS B;  5J6A A;  3GQT A;  3M9V A;  1RP3 A;  2RDZ A;  2JBR A;  2Q8F A;  3F29 A;  2OEV A;  3GM6 A;  2GBB A;  2LFW A;  5GJV E;  2J7A A;  2Q8H A;  3Q24 A;  4IV6 A;  4DZY A;  2YYL A;  4L3X A;  5J71 A;  4KSA A;  1FS7 A;  3AFE A;  3X29 A;  4NXL A;  4W9U A;  3MDE A;  3II9 A;  1JQI A;  4O5M A;  5BRM A;  2Z1Q A;  1XFV A;  2YYI A;  1RX0 A;  1Y8N A;  3D9E A;  1IVH A;  5K3I A;  2E80 A;  2A1T A;  2YYG A;  4MP7 A;  4FF3 A;  4FF2 A;  3TTB A;  3OWA A;  1EGD A;  3Q0A A;  3SF6 A;  5EZ3 A;  3MPJ A;  4H81 A;  4FF1 A;  2EBH X;  2FON A; 
#chains in the Genus database with same CATH homology
 3UBR A;  3PFD A;  1BUC A;  4G5E A;  3AFF A;  3MPI A;  1OAH A;  4XVX A;  3SWO A;  4U83 A;  3MKH A;  2WBI A;  1SIQ A;  1EGC A;  4N5F A;  2OR0 A;  4L3Y A;  2JIF A;  3RKH A;  4ZYJ A;  1SIR A;  3D9D A;  3R7K A;  2C12 A;  1WS9 A;  2VIG A;  3EON A;  1W07 A;  2IX5 A;  1U8V A;  2EBA A;  1IS2 A;  4Q1O A;  3UU9 A;  2JBT A;  1R2J A;  2OT4 A;  3SXQ A;  3S7W A;  4RM7 A;  3D6B A;  3LG1 A;  3FCJ A;  1UDY A;  3MDD A;  4WJY A;  1EGE A;  2UXW A;  3B96 A;  3SCE A;  2DDH A;  4P13 A;  4Q5C A;  4X28 A;  2JBS A;  1UKW A;  2C0U A;  3OIB A;  3LGQ A;  2VR0 A;  2E81 A;  3GNC A;  4Q0T A;  3X0Y A;  2YYK A;  4Q4U A;  3D9F A;  5K3G A;  2R0M A;  4ZXV A;  3EOM A;  2IX6 A;  1T9G A;  2REH A;  3D1I A;  2R0N A;  2YYJ A;  4L1F A;  4KCF A;  2RF7 A;  4Q5B A;  3FO3 A;  4OO2 A;  3X0X A;  5K3H A;  4L38 A;  4JEK A;  1FS8 A;  3OWM A;  4L3Z A;  3L1T A;  2CX9 A;  3BNJ A;  3D9G A;  4HR3 A;  1GU6 A;  5K3J A;  3HWC A;  4X28 C;  1FS9 A;  2YYM A;  3BNF A;  2ZAF A;  3BNH A;  3NF4 A;  2DVL A;  2PG0 A;  4IRN A;  2D29 A;  3P4T A;  2ZO5 A;  4Q17 A;  4M9A A;  1QDB A;  4KTO A;  3BNG A;  3TOR A;  2RFQ A;  3MXL A;  4DOY A;  3MMO A;  3GQT A;  3M9V A;  2RDZ A;  2JBR A;  3F29 A;  3GM6 A;  2J7A A;  4IV6 A;  2YYL A;  4L3X A;  1FS7 A;  3AFE A;  4NXL A;  4W9U A;  3MDE A;  3II9 A;  1JQI A;  4O5M A;  2Z1Q A;  2YYI A;  1RX0 A;  3D9E A;  1IVH A;  5K3I A;  2E80 A;  2A1T A;  2YYG A;  3TTB A;  3OWA A;  1EGD A;  3SF6 A;  3MPJ A;  2FON A; 
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similar chains in the Genus database (?% sequence similarity)
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