4ZYJA

Streptomyces peucetius nitrososynthase dnmz in tdp-bound state
Total Genus 143
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
143
sequence length
395
structure length
388
Chain Sequence
GVLADNGLCEPKTPAGRRLLDLLERYLPALEAESRDNDREATLPVHLFDRMRKEGVLGATVPEDLGGLGVHSLHDVALALARIAGRDAGVALALHMQFSRGLTLDFEWRHGAPSTRPLAEDLLRQMGAGEAVICGAVKDVRGTTVLTRDGSYRLNGRKTLVSMAGIATHYVVSTRLEEAPVRLAAPVVARTTPGLTVLDNWDGMGMRSSGSVDIVFDGCPVDRDRVLPRGEPDDAALAGQTVSSIAMLGIYVGIAEAARRIALTELRRRGGAPAGVRTTVAEIDARLFALHTAVASALTTADRLADDLSGDLAARGRAMMTPFQYAKLLVNRHSVGVVDDCLMLVGGAGYSNSHPLARLYRDVRAGGFMHPYNFTDGVDYLSEVALGR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structure of DnmZ, a nitrososynthase in the Streptomyces peucetius anthracycline biosynthetic pathway.
pubmed doi rcsb
molecule tags Oxidoreductase
source organism Streptomyces peucetius
molecule keywords DnmZ
total genus 143
structure length 388
sequence length 395
chains with identical sequence B, C, D
ec nomenclature ec 1.14.13.187: L-evernosamine nitrososynthase.
pdb deposition date 2015-05-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00441 Acyl-CoA_dh_1 Acyl-CoA dehydrogenase, C-terminal domain
A PF02770 Acyl-CoA_dh_M Acyl-CoA dehydrogenase, middle domain
A PF02771 Acyl-CoA_dh_N Acyl-CoA dehydrogenase, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.540.10 Mainly Alpha Orthogonal Bundle Butyryl-Coa Dehydrogenase, subunit A; domain 1 Acyl-CoA dehydrogenase/oxidase, N-terminal domain 4zyjA01
1.20.140.10 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A; domain 3 Butyryl-CoA Dehydrogenase, subunit A, domain 3 4zyjA03
2.40.110.10 Mainly Beta Beta Barrel Butyryl-CoA Dehydrogenase, subunit A; domain 2 Butyryl-CoA Dehydrogenase, subunit A, domain 2 4zyjA02
1GU6A 2RDZA 2RF7A 1RX0A 2D29A 3D9GA 5K3GA 2EBAA 3BNHA 1IVHA 4Q4UA 1UDYA 1WS9A 2YYLA 4M9AA 1FS7A 1OAHA 3D9EA 4XVXA 2J7AA 4RM7A 1T9GA 4ZYJA 3SWOA 2CX9A 3MMOA 3MPIA 3RKHA 2C0UA 2R0MA 3GNCA 3SCEA 3D9FA 2OR0A 3M9VA 2ZO5A 2E80A 3GM6A 4L38A 3EOMA 2JIFA 3R7KA 3TORA 3AFFA 2IX6A 4JEKA 3P4TA 3MKHA 2E81A 4Q5BA 2YYGA 1U8VA 1UKWA 2JBRA 4Q1OA 3SXQA 2VR0A 3AFEA 3PFDA 3D9DA 4IV6A 1FS9A 4WJYA 3BNJA 1SIQA 3BNGA 3HWCA 1SIRA 3TTBA 2YYJA 3F29A 4KCFA 4U83A 3FO3A 4ZXVA 3MXLA 3OIBA 1W07A 1EGCA 4L1FA 3LGQA 1BUCA 2DDHA 3OWAA 2WBIA 4DOYA 2C12A 2DVLA 5K3IA 2YYKA 2A1TA 2JBTA 3B96A 4O5MA 4G5EA 4W9UA 4HR3A 3LG1A 4Q0TA 1QDBA 4L3XA 3MPJA 3FCJA 4Q5CA 4X28C 2REHA 2VIGA 2PG0A 5K3HA 3L1TA 2Z1QA 4X28A 2RFQA 3S7WA 4N5FA 1IS2A 4L3ZA 2IX5A 2FONA 2YYMA 4OO2A 3MDDA 3SF6A 2OT4A 3NF4A 4IRNA 1R2JA 2ZAFA 3MDEA 4KTOA 1FS8A 4Q17A 3GQTA 1EGEA 2JBSA 3UU9A 2YYIA 5K3JA 3D1IA 4NXLA 3BNFA 2UXWA 3EONA 4P13A 3II9A 2R0NA 3OWMA 3UBRA 1JQIA 3X0YA 4L3YA 3X0XA 1EGDA 3D6BA
chains in the Genus database with same CATH superfamily
1GU6A 2RDZA 3TZ2A 2RF7A 1RX0A 2Q8GA 2D29A 3D9GA 5K3GA 4H85A 2EBAA 2ZDXA 1IVHA 3BNHA 5B6BA 4FF1A 4JIOA 4Q4UA 1UDYA 1WS9A 3SCEA 2OEVA 2BU2A 3N0RA 4KSFA 2EBFX 2YYLA 2EC5A 4M9AA 1FS7A 2LFWA 4FF2A 1OAHA 2R02A 3X29A 5GJVE 5M4NA 1RP3A 3D9EA 1PK0A 3VADA 4XVXA 4KS9A 5BRMA 4E01A 3C2PA 3VKGA 5EZ3A 2J7AA 4RM7A 1T9GA 4ZYJA 1XFVA 3SWOA 1K8TA 1JM6A 2CX9A 2QR4A 3CE2A 3TZ5A 3MMOA 3MPIA 3RKHA 2C0UA 2R0MA 3GNCA 4J1VA 3D9FA 4KSAA 1Y8OA 4LQQB 2OR0A 3M9VA 2ZO5A 1R3BA 2E80A 3GM6A 3EOMA 4L38A 2JIFA 1XFZA 3Q22A 4MPNA 4E02A 3CRLA 1RJ4A 4MPEA 1Y0VA 3R7KA 4H7QA 2XQRB 1SC5A 3TORA 3AFFA 1X90A 3D2RA 2CJ6A 2IX6A 4JEKA 3P4TA 2Q8IA 4E00A 2CJ7A 3MKHA 4MPCA 2E81A 5M4KA 2Q8HA 1XFWA 4Q5BA 5B5VA 2YYGA 1U8VA 1UKWA 3C3LA 2JBRA 2GBBA 4Q1OA 3SXQA 2FP1A 2VR0A 3AFEA 3PFDA 3C46A 3D9DA 4IV6A 1FS9A 1K93A 2HJNA 4WJYA 3BNJA 1SIQA 3BNGA 3HWCA 1SIRA 4V26A 2YYJA 3TTBA 3F29A 3U33A 2XS8A 4KCFA 4U83A 2CJ8A 3FO3A 4ZXVA 1S26A 1XFYA 1K90A 3MXLA 3OIBA 1W07A 1EGCA 2YGWA 4L1FA 3LGQA 1BUCA 1GKXA 1XFXA 2DDHA 3OWAA 4QICA 5B5WA 2WBIA 4DOYA 2PNRA 2C12A 1PI1A 1Y8NA 2DVLA 2ZKJA 5K3IA 2YYKA 3KMLA 4FF4A 2A1TA 2JBTA 3B96A 4O5MA 2BTZA 4G5EA 4F0XA 4W9UA 4HR3A 2E0AA 2FP2A 2OJQA 3LG1A 4Q0TA 4MP7A 4DZYA 1QDBA 2BU7A 4L3XA 2OEXA 3TZ4A 4V25A 4H81A 1RJ1A 5M4PA 5M4MA 3MPJA 3FCJA 4Q5CA 4FZ4A 4X28C 2Q8FA 2REHA 2VIGA 2PG0A 5J6AA 2CJ4A 5K3HA 3L1TA 3Q24A 2Z1QA 4X28A 2RFQA 1XFUA 4AKGA 2BU6A 1SK6A 2F6LA 3S7WA 3Q23A 4AKHA 4N5FA 1IS2A 4L3ZA 2IX5A 2FONA 2YYMA 4OO2A 2BU8A 3MDDA 3SF6A 2VF1A 1Y8PA 3NF4A 2PO4A 4JIZA 2OT4A 4IRNA 1R2JA 2BU5A 2ZAFA 3MDEA 4KTOA 2AO2A 2R05A 4LQSB 1FS8A 4Q17A 3GQTA 1EGEA 2JBSA 4P79A 5GJWE 3UU9A 2YYIA 5K3JA 1X91A 2ZDYA 3D1IA 4AI6A 3DJLA 4NXLA 1X8ZA 1XG2B 1LVCA 3BNFA 1GJVA 2UXWA 3EONA 2AZEA 4P13A 2CJ5A 4HKRA 3II9A 3TZ0A 4FF3A 5BRKA 2R0NA 3OWMA 3UBRA 3VKHA 1JQIA 4AKIA 1GKZA 3X0YA 2R03A 2XS1A 3CRKA 4HKSA 2EBHX 4L3YA 3X0XA 4G97A 1EGDA 3D6BA 4MP2A 5J71A 3Q0AA
chains in the Genus database with same CATH topology
1GU6A 2RDZA 2RF7A 1RX0A 2D29A 3D9GA 5K3GA 2EBAA 3BNHA 1IVHA 4Q4UA 1UDYA 1WS9A 2YYLA 4M9AA 1FS7A 1OAHA 3D9EA 4XVXA 2J7AA 4RM7A 1T9GA 4ZYJA 3SWOA 2CX9A 3MMOA 3MPIA 3RKHA 2C0UA 2R0MA 3GNCA 3SCEA 3D9FA 2OR0A 3M9VA 2ZO5A 2E80A 3GM6A 4L38A 3EOMA 2JIFA 3R7KA 3TORA 3AFFA 2IX6A 4JEKA 3P4TA 3MKHA 2E81A 4Q5BA 2YYGA 1U8VA 1UKWA 2JBRA 4Q1OA 3SXQA 2VR0A 3AFEA 3PFDA 3D9DA 4IV6A 1FS9A 4WJYA 3BNJA 1SIQA 3BNGA 3HWCA 1SIRA 3TTBA 2YYJA 3F29A 4KCFA 4U83A 3FO3A 4ZXVA 3MXLA 3OIBA 1W07A 1EGCA 4L1FA 3LGQA 1BUCA 2DDHA 3OWAA 2WBIA 4DOYA 2C12A 2DVLA 5K3IA 2YYKA 2A1TA 2JBTA 3B96A 4O5MA 4G5EA 4W9UA 4HR3A 3LG1A 4Q0TA 1QDBA 4L3XA 3MPJA 3FCJA 4Q5CA 4X28C 2REHA 2VIGA 2PG0A 5K3HA 3L1TA 2Z1QA 4X28A 2RFQA 3S7WA 4N5FA 1IS2A 4L3ZA 2IX5A 2FONA 2YYMA 4OO2A 3MDDA 3SF6A 2OT4A 3NF4A 4IRNA 1R2JA 2ZAFA 3MDEA 4KTOA 1FS8A 4Q17A 3GQTA 1EGEA 2JBSA 3UU9A 2YYIA 5K3JA 3D1IA 4NXLA 3BNFA 2UXWA 3EONA 4P13A 3II9A 2R0NA 3OWMA 3UBRA 1JQIA 3X0YA 4L3YA 3X0XA 1EGDA 3D6BA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1GU6 A;  2RDZ A;  2RF7 A;  1RX0 A;  2D29 A;  3D9G A;  5K3G A;  2EBA A;  3BNH A;  1IVH A;  4Q4U A;  1UDY A;  1WS9 A;  2YYL A;  4M9A A;  1FS7 A;  1OAH A;  3D9E A;  4XVX A;  2J7A A;  4RM7 A;  1T9G A;  4ZYJ A;  3SWO A;  2CX9 A;  3MMO A;  3MPI A;  3RKH A;  2C0U A;  2R0M A;  3GNC A;  3SCE A;  3D9F A;  2OR0 A;  3M9V A;  2ZO5 A;  2E80 A;  3GM6 A;  4L38 A;  3EOM A;  2JIF A;  3R7K A;  3TOR A;  3AFF A;  2IX6 A;  4JEK A;  3P4T A;  3MKH A;  2E81 A;  4Q5B A;  2YYG A;  1U8V A;  1UKW A;  2JBR A;  4Q1O A;  3SXQ A;  2VR0 A;  3AFE A;  3PFD A;  3D9D A;  4IV6 A;  1FS9 A;  4WJY A;  3BNJ A;  1SIQ A;  3BNG A;  3HWC A;  1SIR A;  3TTB A;  2YYJ A;  3F29 A;  4KCF A;  4U83 A;  3FO3 A;  4ZXV A;  3MXL A;  3OIB A;  1W07 A;  1EGC A;  4L1F A;  3LGQ A;  1BUC A;  2DDH A;  3OWA A;  2WBI A;  4DOY A;  2C12 A;  2DVL A;  5K3I A;  2YYK A;  2A1T A;  2JBT A;  3B96 A;  4O5M A;  4G5E A;  4W9U A;  4HR3 A;  3LG1 A;  4Q0T A;  1QDB A;  4L3X A;  3MPJ A;  3FCJ A;  4Q5C A;  4X28 C;  2REH A;  2VIG A;  2PG0 A;  5K3H A;  3L1T A;  2Z1Q A;  4X28 A;  2RFQ A;  3S7W A;  4N5F A;  1IS2 A;  4L3Z A;  2IX5 A;  2FON A;  2YYM A;  4OO2 A;  3MDD A;  3SF6 A;  2OT4 A;  3NF4 A;  4IRN A;  1R2J A;  2ZAF A;  3MDE A;  4KTO A;  1FS8 A;  4Q17 A;  3GQT A;  1EGE A;  2JBS A;  3UU9 A;  2YYI A;  5K3J A;  3D1I A;  4NXL A;  3BNF A;  2UXW A;  3EON A;  4P13 A;  3II9 A;  2R0N A;  3OWM A;  3UBR A;  1JQI A;  3X0Y A;  4L3Y A;  3X0X A;  1EGD A;  3D6B A; 
#chains in the Genus database with same CATH topology
 1GU6 A;  2RDZ A;  3TZ2 A;  2RF7 A;  1RX0 A;  2Q8G A;  2D29 A;  3D9G A;  5K3G A;  4H85 A;  2EBA A;  2ZDX A;  1IVH A;  3BNH A;  5B6B A;  4FF1 A;  4JIO A;  4Q4U A;  1UDY A;  1WS9 A;  3SCE A;  2OEV A;  2BU2 A;  3N0R A;  4KSF A;  2EBF X;  2YYL A;  2EC5 A;  4M9A A;  1FS7 A;  2LFW A;  4FF2 A;  1OAH A;  2R02 A;  3X29 A;  5GJV E;  5M4N A;  1RP3 A;  3D9E A;  1PK0 A;  3VAD A;  4XVX A;  4KS9 A;  5BRM A;  4E01 A;  3C2P A;  3VKG A;  5EZ3 A;  2J7A A;  4RM7 A;  1T9G A;  4ZYJ A;  1XFV A;  3SWO A;  1K8T A;  1JM6 A;  2CX9 A;  2QR4 A;  3CE2 A;  3TZ5 A;  3MMO A;  3MPI A;  3RKH A;  2C0U A;  2R0M A;  3GNC A;  4J1V A;  3D9F A;  4KSA A;  1Y8O A;  4LQQ B;  2OR0 A;  3M9V A;  2ZO5 A;  1R3B A;  2E80 A;  3GM6 A;  3EOM A;  4L38 A;  2JIF A;  1XFZ A;  3Q22 A;  4MPN A;  4E02 A;  3CRL A;  1RJ4 A;  4MPE A;  1Y0V A;  3R7K A;  4H7Q A;  2XQR B;  1SC5 A;  3TOR A;  3AFF A;  1X90 A;  3D2R A;  2CJ6 A;  2IX6 A;  4JEK A;  3P4T A;  2Q8I A;  4E00 A;  2CJ7 A;  3MKH A;  4MPC A;  2E81 A;  5M4K A;  2Q8H A;  1XFW A;  4Q5B A;  5B5V A;  2YYG A;  1U8V A;  1UKW A;  3C3L A;  2JBR A;  2GBB A;  4Q1O A;  3SXQ A;  2FP1 A;  2VR0 A;  3AFE A;  3PFD A;  3C46 A;  3D9D A;  4IV6 A;  1FS9 A;  1K93 A;  2HJN A;  4WJY A;  3BNJ A;  1SIQ A;  3BNG A;  3HWC A;  1SIR A;  4V26 A;  2YYJ A;  3TTB A;  3F29 A;  3U33 A;  2XS8 A;  4KCF A;  4U83 A;  2CJ8 A;  3FO3 A;  4ZXV A;  1S26 A;  1XFY A;  1K90 A;  3MXL A;  3OIB A;  1W07 A;  1EGC A;  2YGW A;  4L1F A;  3LGQ A;  1BUC A;  1GKX A;  1XFX A;  2DDH A;  3OWA A;  4QIC A;  5B5W A;  2WBI A;  4DOY A;  2PNR A;  2C12 A;  1PI1 A;  1Y8N A;  2DVL A;  2ZKJ A;  5K3I A;  2YYK A;  3KML A;  4FF4 A;  2A1T A;  2JBT A;  3B96 A;  4O5M A;  2BTZ A;  4G5E A;  4F0X A;  4W9U A;  4HR3 A;  2E0A A;  2FP2 A;  2OJQ A;  3LG1 A;  4Q0T A;  4MP7 A;  4DZY A;  1QDB A;  2BU7 A;  4L3X A;  2OEX A;  3TZ4 A;  4V25 A;  4H81 A;  1RJ1 A;  5M4P A;  5M4M A;  3MPJ A;  3FCJ A;  4Q5C A;  4FZ4 A;  4X28 C;  2Q8F A;  2REH A;  2VIG A;  2PG0 A;  5J6A A;  2CJ4 A;  5K3H A;  3L1T A;  3Q24 A;  2Z1Q A;  4X28 A;  2RFQ A;  1XFU A;  4AKG A;  2BU6 A;  1SK6 A;  2F6L A;  3S7W A;  3Q23 A;  4AKH A;  4N5F A;  1IS2 A;  4L3Z A;  2IX5 A;  2FON A;  2YYM A;  4OO2 A;  2BU8 A;  3MDD A;  3SF6 A;  2VF1 A;  1Y8P A;  3NF4 A;  2PO4 A;  4JIZ A;  2OT4 A;  4IRN A;  1R2J A;  2BU5 A;  2ZAF A;  3MDE A;  4KTO A;  2AO2 A;  2R05 A;  4LQS B;  1FS8 A;  4Q17 A;  3GQT A;  1EGE A;  2JBS A;  4P79 A;  5GJW E;  3UU9 A;  2YYI A;  5K3J A;  1X91 A;  2ZDY A;  3D1I A;  4AI6 A;  3DJL A;  4NXL A;  1X8Z A;  1XG2 B;  1LVC A;  3BNF A;  1GJV A;  2UXW A;  3EON A;  2AZE A;  4P13 A;  2CJ5 A;  4HKR A;  3II9 A;  3TZ0 A;  4FF3 A;  5BRK A;  2R0N A;  3OWM A;  3UBR A;  3VKH A;  1JQI A;  4AKI A;  1GKZ A;  3X0Y A;  2R03 A;  2XS1 A;  3CRK A;  4HKS A;  2EBH X;  4L3Y A;  3X0X A;  4G97 A;  1EGD A;  3D6B A;  4MP2 A;  5J71 A;  3Q0A A; 
#chains in the Genus database with same CATH homology
 1GU6 A;  2RDZ A;  2RF7 A;  1RX0 A;  2D29 A;  3D9G A;  5K3G A;  2EBA A;  3BNH A;  1IVH A;  4Q4U A;  1UDY A;  1WS9 A;  2YYL A;  4M9A A;  1FS7 A;  1OAH A;  3D9E A;  4XVX A;  2J7A A;  4RM7 A;  1T9G A;  4ZYJ A;  3SWO A;  2CX9 A;  3MMO A;  3MPI A;  3RKH A;  2C0U A;  2R0M A;  3GNC A;  3SCE A;  3D9F A;  2OR0 A;  3M9V A;  2ZO5 A;  2E80 A;  3GM6 A;  4L38 A;  3EOM A;  2JIF A;  3R7K A;  3TOR A;  3AFF A;  2IX6 A;  4JEK A;  3P4T A;  3MKH A;  2E81 A;  4Q5B A;  2YYG A;  1U8V A;  1UKW A;  2JBR A;  4Q1O A;  3SXQ A;  2VR0 A;  3AFE A;  3PFD A;  3D9D A;  4IV6 A;  1FS9 A;  4WJY A;  3BNJ A;  1SIQ A;  3BNG A;  3HWC A;  1SIR A;  3TTB A;  2YYJ A;  3F29 A;  4KCF A;  4U83 A;  3FO3 A;  4ZXV A;  3MXL A;  3OIB A;  1W07 A;  1EGC A;  4L1F A;  3LGQ A;  1BUC A;  2DDH A;  3OWA A;  2WBI A;  4DOY A;  2C12 A;  2DVL A;  5K3I A;  2YYK A;  2A1T A;  2JBT A;  3B96 A;  4O5M A;  4G5E A;  4W9U A;  4HR3 A;  3LG1 A;  4Q0T A;  1QDB A;  4L3X A;  3MPJ A;  3FCJ A;  4Q5C A;  4X28 C;  2REH A;  2VIG A;  2PG0 A;  5K3H A;  3L1T A;  2Z1Q A;  4X28 A;  2RFQ A;  3S7W A;  4N5F A;  1IS2 A;  4L3Z A;  2IX5 A;  2FON A;  2YYM A;  4OO2 A;  3MDD A;  3SF6 A;  2OT4 A;  3NF4 A;  4IRN A;  1R2J A;  2ZAF A;  3MDE A;  4KTO A;  1FS8 A;  4Q17 A;  3GQT A;  1EGE A;  2JBS A;  3UU9 A;  2YYI A;  5K3J A;  3D1I A;  4NXL A;  3BNF A;  2UXW A;  3EON A;  4P13 A;  3II9 A;  2R0N A;  3OWM A;  3UBR A;  1JQI A;  3X0Y A;  4L3Y A;  3X0X A;  1EGD A;  3D6B A; 
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similar chains in the Genus database (?% sequence similarity)
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