3D9FA

Nitroalkane oxidase: active site mutant s276a crystallized with 1-nitrohexane
Total Genus 159
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
159
sequence length
431
structure length
431
Chain Sequence
VDFKLSPSQLEARRHAQAFANTVLTKASAEYSTQKDQLSRFQATRPFYREAVRHGLIKAQVPIPLGGTMESLVHESIILEELFAVEPATSITIVATALGLMPVILCDSPSLQEKFLKPFISGEGEPLASLMHSEPNGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNSGGWDYKGADLACVVCRVSDDPSKPQDPNVDPATQIAVLLVTRETIANNKKDAYQILGEPELAGHITTSGPHTRFTEFHVPHENLLCTPGLKAQGLVETAFAMAAALVGAMAIGTARAAFEEALVFAKSDTRGGSKHIIEHQSVADKLIDCKIRLETSRLLVWKAVTTLEDEALEWKVKLEMAMQTKIYTTDVAVECVIDAMKAVGMKSYAKDMSFPRLLNEVMCYPLFDGGNIGLRRRQMQRVMALEDYEPWAATYGSS
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords Nitroalkane oxidase
publication title Crystal structures of intermediates in the nitroalkane oxidase reaction.
pubmed doi rcsb
source organism Fusarium oxysporum
total genus 159
structure length 431
sequence length 431
chains with identical sequence B, C, D
ec nomenclature ec 1.7.3.1: Nitroalkane oxidase.
pdb deposition date 2008-05-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00441 Acyl-CoA_dh_1 Acyl-CoA dehydrogenase, C-terminal domain
A PF02771 Acyl-CoA_dh_N Acyl-CoA dehydrogenase, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.540.10 Mainly Alpha Orthogonal Bundle Butyryl-Coa Dehydrogenase, subunit A; domain 1 Acyl-CoA dehydrogenase/oxidase, N-terminal domain 3d9fA01
1.20.140.10 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A; domain 3 Butyryl-CoA Dehydrogenase, subunit A, domain 3 3d9fA03
2.40.110.10 Mainly Beta Beta Barrel Butyryl-CoA Dehydrogenase, subunit A; domain 2 Butyryl-CoA Dehydrogenase, subunit A, domain 2 3d9fA02
3NF4A 2ZAFA 4Q0TA 1QDBA 4N5FA 4L1FA 3TORA 2WBIA 4L3ZA 3LGQA 2REHA 4X28C 3MDEA 4NXLA 3UBRA 3MDDA 1OAHA 2EBAA 3AFEA 4KTOA 3FO3A 2Z1QA 3MKHA 2JBSA 1EGEA 2A1TA 2R0MA 2OR0A 4HR3A 3D6BA 1T9GA 3GNCA 3II9A 4DOYA 4ZYJA 2JIFA 3FCJA 2YYLA 2VR0A 1EGCA 3OIBA 3BNHA 3S7WA 3UU9A 3F29A 1FS9A 3RKHA 2JBTA 3D9DA 4P13A 3D1IA 4XVXA 3AFFA 4M9AA 4Q17A 3B96A 2YYMA 2D29A 2VIGA 2YYGA 3P4TA 5K3JA 5K3GA 1JQIA 4RM7A 3BNFA 4O5MA 1FS8A 3X0XA 1UDYA 4L38A 1SIQA 4IV6A 4JEKA 3MXLA 4L3XA 4KCFA 4ZXVA 3MPIA 4IRNA 2RF7A 2RDZA 3OWMA 2C0UA 2DVLA 1WS9A 3SF6A 4Q5BA 4Q5CA 4G5EA 3HWCA 1FS7A 3M9VA 2IX5A 1BUCA 2E81A 1SIRA 1R2JA 3R7KA 1U8VA 3SWOA 1EGDA 2FONA 3BNJA 3MMOA 1RX0A 3BNGA 2OT4A 1GU6A 1W07A 2IX6A 3GQTA 4OO2A 1IS2A 4Q4UA 4X28A 5K3HA 3OWAA 2YYJA 3SCEA 4WJYA 3EOMA 3X0YA 5K3IA 2ZO5A 3L1TA 2PG0A 2UXWA 2R0NA 3GM6A 4Q1OA 3SXQA 2JBRA 2J7AA 3LG1A 3EONA 3TTBA 3MPJA 4L3YA 2YYIA 4W9UA 2RFQA 2YYKA 1UKWA 2C12A 3D9GA 2DDHA 2E80A 3D9EA 4U83A 1IVHA 3D9FA 3PFDA 2CX9A
chains in the Genus database with same CATH superfamily
3NF4A 3DJLA 5GJWE 2ZAFA 4Q0TA 1QDBA 5B6BA 4N5FA 4L1FA 1JM6A 3TORA 2WBIA 1Y8PA 5BRMA 5EZ3A 4L3ZA 3LGQA 4MPEA 2REHA 4G97A 4X28C 3MDEA 4NXLA 1GJVA 3UBRA 1RP3A 2FP2A 3TZ4A 2BU7A 3MDDA 4MPNA 3VADA 1K93A 1OAHA 1XFZA 2EBAA 3AFEA 4KTOA 3FO3A 5B5VA 2Z1QA 3MKHA 2LFWA 2JBSA 4FF3A 4AI6A 5M4NA 1EGEA 2A1TA 2R0MA 1S26A 2OR0A 4HR3A 3D6BA 5M4PA 1T9GA 2AZEA 3GNCA 3II9A 4DOYA 4ZYJA 2JIFA 3FCJA 2YYLA 2VR0A 1EGCA 2Q8GA 5J71A 2ZKJA 1PI1A 3OIBA 2EBHX 3BNHA 1X8ZA 3S7WA 3UU9A 5M4MA 3F29A 1FS9A 3RKHA 3Q24A 2JBTA 3D9DA 4P13A 3D1IA 4AKGA 4XVXA 3CE2A 3CRLA 3TZ2A 3AFFA 4M9AA 1XFXA 1XFWA 4Q17A 1X91A 2XS1A 4JIOA 3B96A 1K8TA 1GKXA 2YYMA 2D29A 2VIGA 2R03A 2YYGA 3P4TA 2PO4A 5K3JA 4MP7A 5K3GA 2CJ7A 1JQIA 4RM7A 4P79A 2VF1A 5BRKA 3BNFA 4O5MA 1FS8A 1X90A 5J6AA 2EBFX 3X0XA 1UDYA 1PK0A 1SIQA 4IV6A 1K90A 1RJ1A 1RJ4A 2OJQA 4L38A 2Q8IA 4DZYA 4JEKA 1SC5A 3MXLA 4FZ4A 2CJ5A 4KCFA 4L3XA 3X29A 4ZXVA 4HKSA 3MPIA 4IRNA 4KSFA 3TZ5A 2RF7A 2RDZA 1R3BA 3OWMA 3Q23A 2BU2A 2EC5A 2C0UA 4LQSB 4AKIA 2DVLA 5B5WA 1WS9A 1SK6A 3SF6A 4Q5BA 4Q5CA 2CJ4A 1XFUA 4G5EA 3HWCA 5GJVE 1XG2B 1FS7A 4KSAA 3Q0AA 3C3LA 4H85A 4JIZA 3M9VA 2GBBA 2IX5A 4E00A 1BUCA 2E81A 2F6LA 2BU6A 3C2PA 1SIRA 4QICA 1R2JA 3R7KA 4MP2A 4MPCA 1U8VA 3SWOA 2XS8A 3Q22A 1EGDA 4FF2A 2FONA 3BNJA 3MMOA 4E02A 1RX0A 2OEXA 2E0AA 3BNGA 2OT4A 1GU6A 4FF1A 1W07A 4J1VA 1GKZA 4LQQB 2IX6A 2HJNA 3GQTA 4E01A 4OO2A 1IS2A 2R02A 1XFVA 4Q4UA 4X28A 5K3HA 3OWAA 2YYJA 4H81A 3SCEA 4WJYA 3EOMA 3X0YA 5K3IA 2ZO5A 2QR4A 2PG0A 3L1TA 2XQRB 2UXWA 2R0NA 1LVCA 2CJ8A 3GM6A 3N0RA 3C46A 4KS9A 4V26A 2CJ6A 4Q1OA 2Q8HA 2R05A 2JBRA 3CRKA 2PNRA 2BU8A 3SXQA 2J7AA 3U33A 3LG1A 2Q8FA 2BTZA 3EONA 2FP1A 2OEVA 3TTBA 5M4KA 4V25A 3MPJA 1Y8NA 3D2RA 2YYIA 4W9UA 2RFQA 3KMLA 2YYKA 1UKWA 4H7QA 2C12A 4HKRA 3D9GA 2AO2A 4FF4A 2ZDYA 4AKHA 1Y0VA 1Y8OA 2DDHA 2YGWA 2E80A 4F0XA 2ZDXA 3VKHA 3D9EA 4U83A 1IVHA 3D9FA 2BU5A 3TZ0A 3PFDA 2CX9A 1XFYA 4L3YA 3VKGA
chains in the Genus database with same CATH topology
3NF4A 2ZAFA 4Q0TA 1QDBA 4N5FA 4L1FA 3TORA 2WBIA 4L3ZA 3LGQA 2REHA 4X28C 3MDEA 4NXLA 3UBRA 3MDDA 1OAHA 2EBAA 3AFEA 4KTOA 3FO3A 2Z1QA 3MKHA 2JBSA 1EGEA 2A1TA 2R0MA 2OR0A 4HR3A 3D6BA 1T9GA 3GNCA 3II9A 4DOYA 4ZYJA 2JIFA 3FCJA 2YYLA 2VR0A 1EGCA 3OIBA 3BNHA 3S7WA 3UU9A 3F29A 1FS9A 3RKHA 2JBTA 3D9DA 4P13A 3D1IA 4XVXA 3AFFA 4M9AA 4Q17A 3B96A 2YYMA 2D29A 2VIGA 2YYGA 3P4TA 5K3JA 5K3GA 1JQIA 4RM7A 3BNFA 4O5MA 1FS8A 3X0XA 1UDYA 4L38A 1SIQA 4IV6A 4JEKA 3MXLA 4L3XA 4KCFA 4ZXVA 3MPIA 4IRNA 2RF7A 2RDZA 3OWMA 2C0UA 2DVLA 1WS9A 3SF6A 4Q5BA 4Q5CA 4G5EA 3HWCA 1FS7A 3M9VA 2IX5A 1BUCA 2E81A 1SIRA 1R2JA 3R7KA 1U8VA 3SWOA 1EGDA 2FONA 3BNJA 3MMOA 1RX0A 3BNGA 2OT4A 1GU6A 1W07A 2IX6A 3GQTA 4OO2A 1IS2A 4Q4UA 4X28A 5K3HA 3OWAA 2YYJA 3SCEA 4WJYA 3EOMA 3X0YA 5K3IA 2ZO5A 3L1TA 2PG0A 2UXWA 2R0NA 3GM6A 4Q1OA 3SXQA 2JBRA 2J7AA 3LG1A 3EONA 3TTBA 3MPJA 4L3YA 2YYIA 4W9UA 2RFQA 2YYKA 1UKWA 2C12A 3D9GA 2DDHA 2E80A 3D9EA 4U83A 1IVHA 3D9FA 3PFDA 2CX9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3NF4 A;  2ZAF A;  4Q0T A;  1QDB A;  4N5F A;  4L1F A;  3TOR A;  2WBI A;  4L3Z A;  3LGQ A;  2REH A;  4X28 C;  3MDE A;  4NXL A;  3UBR A;  3MDD A;  1OAH A;  2EBA A;  3AFE A;  4KTO A;  3FO3 A;  2Z1Q A;  3MKH A;  2JBS A;  1EGE A;  2A1T A;  2R0M A;  2OR0 A;  4HR3 A;  3D6B A;  1T9G A;  3GNC A;  3II9 A;  4DOY A;  4ZYJ A;  2JIF A;  3FCJ A;  2YYL A;  2VR0 A;  1EGC A;  3OIB A;  3BNH A;  3S7W A;  3UU9 A;  3F29 A;  1FS9 A;  3RKH A;  2JBT A;  3D9D A;  4P13 A;  3D1I A;  4XVX A;  3AFF A;  4M9A A;  4Q17 A;  3B96 A;  2YYM A;  2D29 A;  2VIG A;  2YYG A;  3P4T A;  5K3J A;  5K3G A;  1JQI A;  4RM7 A;  3BNF A;  4O5M A;  1FS8 A;  3X0X A;  1UDY A;  4L38 A;  1SIQ A;  4IV6 A;  4JEK A;  3MXL A;  4L3X A;  4KCF A;  4ZXV A;  3MPI A;  4IRN A;  2RF7 A;  2RDZ A;  3OWM A;  2C0U A;  2DVL A;  1WS9 A;  3SF6 A;  4Q5B A;  4Q5C A;  4G5E A;  3HWC A;  1FS7 A;  3M9V A;  2IX5 A;  1BUC A;  2E81 A;  1SIR A;  1R2J A;  3R7K A;  1U8V A;  3SWO A;  1EGD A;  2FON A;  3BNJ A;  3MMO A;  1RX0 A;  3BNG A;  2OT4 A;  1GU6 A;  1W07 A;  2IX6 A;  3GQT A;  4OO2 A;  1IS2 A;  4Q4U A;  4X28 A;  5K3H A;  3OWA A;  2YYJ A;  3SCE A;  4WJY A;  3EOM A;  3X0Y A;  5K3I A;  2ZO5 A;  3L1T A;  2PG0 A;  2UXW A;  2R0N A;  3GM6 A;  4Q1O A;  3SXQ A;  2JBR A;  2J7A A;  3LG1 A;  3EON A;  3TTB A;  3MPJ A;  4L3Y A;  2YYI A;  4W9U A;  2RFQ A;  2YYK A;  1UKW A;  2C12 A;  3D9G A;  2DDH A;  2E80 A;  3D9E A;  4U83 A;  1IVH A;  3D9F A;  3PFD A;  2CX9 A; 
#chains in the Genus database with same CATH topology
 3NF4 A;  3DJL A;  5GJW E;  2ZAF A;  4Q0T A;  1QDB A;  5B6B A;  4N5F A;  4L1F A;  1JM6 A;  3TOR A;  2WBI A;  1Y8P A;  5BRM A;  5EZ3 A;  4L3Z A;  3LGQ A;  4MPE A;  2REH A;  4G97 A;  4X28 C;  3MDE A;  4NXL A;  1GJV A;  3UBR A;  1RP3 A;  2FP2 A;  3TZ4 A;  2BU7 A;  3MDD A;  4MPN A;  3VAD A;  1K93 A;  1OAH A;  1XFZ A;  2EBA A;  3AFE A;  4KTO A;  3FO3 A;  5B5V A;  2Z1Q A;  3MKH A;  2LFW A;  2JBS A;  4FF3 A;  4AI6 A;  5M4N A;  1EGE A;  2A1T A;  2R0M A;  1S26 A;  2OR0 A;  4HR3 A;  3D6B A;  5M4P A;  1T9G A;  2AZE A;  3GNC A;  3II9 A;  4DOY A;  4ZYJ A;  2JIF A;  3FCJ A;  2YYL A;  2VR0 A;  1EGC A;  2Q8G A;  5J71 A;  2ZKJ A;  1PI1 A;  3OIB A;  2EBH X;  3BNH A;  1X8Z A;  3S7W A;  3UU9 A;  5M4M A;  3F29 A;  1FS9 A;  3RKH A;  3Q24 A;  2JBT A;  3D9D A;  4P13 A;  3D1I A;  4AKG A;  4XVX A;  3CE2 A;  3CRL A;  3TZ2 A;  3AFF A;  4M9A A;  1XFX A;  1XFW A;  4Q17 A;  1X91 A;  2XS1 A;  4JIO A;  3B96 A;  1K8T A;  1GKX A;  2YYM A;  2D29 A;  2VIG A;  2R03 A;  2YYG A;  3P4T A;  2PO4 A;  5K3J A;  4MP7 A;  5K3G A;  2CJ7 A;  1JQI A;  4RM7 A;  4P79 A;  2VF1 A;  5BRK A;  3BNF A;  4O5M A;  1FS8 A;  1X90 A;  5J6A A;  2EBF X;  3X0X A;  1UDY A;  1PK0 A;  1SIQ A;  4IV6 A;  1K90 A;  1RJ1 A;  1RJ4 A;  2OJQ A;  4L38 A;  2Q8I A;  4DZY A;  4JEK A;  1SC5 A;  3MXL A;  4FZ4 A;  2CJ5 A;  4KCF A;  4L3X A;  3X29 A;  4ZXV A;  4HKS A;  3MPI A;  4IRN A;  4KSF A;  3TZ5 A;  2RF7 A;  2RDZ A;  1R3B A;  3OWM A;  3Q23 A;  2BU2 A;  2EC5 A;  2C0U A;  4LQS B;  4AKI A;  2DVL A;  5B5W A;  1WS9 A;  1SK6 A;  3SF6 A;  4Q5B A;  4Q5C A;  2CJ4 A;  1XFU A;  4G5E A;  3HWC A;  5GJV E;  1XG2 B;  1FS7 A;  4KSA A;  3Q0A A;  3C3L A;  4H85 A;  4JIZ A;  3M9V A;  2GBB A;  2IX5 A;  4E00 A;  1BUC A;  2E81 A;  2F6L A;  2BU6 A;  3C2P A;  1SIR A;  4QIC A;  1R2J A;  3R7K A;  4MP2 A;  4MPC A;  1U8V A;  3SWO A;  2XS8 A;  3Q22 A;  1EGD A;  4FF2 A;  2FON A;  3BNJ A;  3MMO A;  4E02 A;  1RX0 A;  2OEX A;  2E0A A;  3BNG A;  2OT4 A;  1GU6 A;  4FF1 A;  1W07 A;  4J1V A;  1GKZ A;  4LQQ B;  2IX6 A;  2HJN A;  3GQT A;  4E01 A;  4OO2 A;  1IS2 A;  2R02 A;  1XFV A;  4Q4U A;  4X28 A;  5K3H A;  3OWA A;  2YYJ A;  4H81 A;  3SCE A;  4WJY A;  3EOM A;  3X0Y A;  5K3I A;  2ZO5 A;  2QR4 A;  2PG0 A;  3L1T A;  2XQR B;  2UXW A;  2R0N A;  1LVC A;  2CJ8 A;  3GM6 A;  3N0R A;  3C46 A;  4KS9 A;  4V26 A;  2CJ6 A;  4Q1O A;  2Q8H A;  2R05 A;  2JBR A;  3CRK A;  2PNR A;  2BU8 A;  3SXQ A;  2J7A A;  3U33 A;  3LG1 A;  2Q8F A;  2BTZ A;  3EON A;  2FP1 A;  2OEV A;  3TTB A;  5M4K A;  4V25 A;  3MPJ A;  1Y8N A;  3D2R A;  2YYI A;  4W9U A;  2RFQ A;  3KML A;  2YYK A;  1UKW A;  4H7Q A;  2C12 A;  4HKR A;  3D9G A;  2AO2 A;  4FF4 A;  2ZDY A;  4AKH A;  1Y0V A;  1Y8O A;  2DDH A;  2YGW A;  2E80 A;  4F0X A;  2ZDX A;  3VKH A;  3D9E A;  4U83 A;  1IVH A;  3D9F A;  2BU5 A;  3TZ0 A;  3PFD A;  2CX9 A;  1XFY A;  4L3Y A;  3VKG A; 
#chains in the Genus database with same CATH homology
 3NF4 A;  2ZAF A;  4Q0T A;  1QDB A;  4N5F A;  4L1F A;  3TOR A;  2WBI A;  4L3Z A;  3LGQ A;  2REH A;  4X28 C;  3MDE A;  4NXL A;  3UBR A;  3MDD A;  1OAH A;  2EBA A;  3AFE A;  4KTO A;  3FO3 A;  2Z1Q A;  3MKH A;  2JBS A;  1EGE A;  2A1T A;  2R0M A;  2OR0 A;  4HR3 A;  3D6B A;  1T9G A;  3GNC A;  3II9 A;  4DOY A;  4ZYJ A;  2JIF A;  3FCJ A;  2YYL A;  2VR0 A;  1EGC A;  3OIB A;  3BNH A;  3S7W A;  3UU9 A;  3F29 A;  1FS9 A;  3RKH A;  2JBT A;  3D9D A;  4P13 A;  3D1I A;  4XVX A;  3AFF A;  4M9A A;  4Q17 A;  3B96 A;  2YYM A;  2D29 A;  2VIG A;  2YYG A;  3P4T A;  5K3J A;  5K3G A;  1JQI A;  4RM7 A;  3BNF A;  4O5M A;  1FS8 A;  3X0X A;  1UDY A;  4L38 A;  1SIQ A;  4IV6 A;  4JEK A;  3MXL A;  4L3X A;  4KCF A;  4ZXV A;  3MPI A;  4IRN A;  2RF7 A;  2RDZ A;  3OWM A;  2C0U A;  2DVL A;  1WS9 A;  3SF6 A;  4Q5B A;  4Q5C A;  4G5E A;  3HWC A;  1FS7 A;  3M9V A;  2IX5 A;  1BUC A;  2E81 A;  1SIR A;  1R2J A;  3R7K A;  1U8V A;  3SWO A;  1EGD A;  2FON A;  3BNJ A;  3MMO A;  1RX0 A;  3BNG A;  2OT4 A;  1GU6 A;  1W07 A;  2IX6 A;  3GQT A;  4OO2 A;  1IS2 A;  4Q4U A;  4X28 A;  5K3H A;  3OWA A;  2YYJ A;  3SCE A;  4WJY A;  3EOM A;  3X0Y A;  5K3I A;  2ZO5 A;  3L1T A;  2PG0 A;  2UXW A;  2R0N A;  3GM6 A;  4Q1O A;  3SXQ A;  2JBR A;  2J7A A;  3LG1 A;  3EON A;  3TTB A;  3MPJ A;  4L3Y A;  2YYI A;  4W9U A;  2RFQ A;  2YYK A;  1UKW A;  2C12 A;  3D9G A;  2DDH A;  2E80 A;  3D9E A;  4U83 A;  1IVH A;  3D9F A;  3PFD A;  2CX9 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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