1WS9A

Crystal structure of project id tt0172 from thermus thermophilus hb8
Total Genus 153
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
153
sequence length
386
structure length
386
Chain Sequence
GLWFEEGAEERQVLGPFREFLKAEVAPGAAERDRTGAFPWDLVRKLAEFGVFGALVPEAYGGAGLSTRLFARMVEAIAYYDGALALTVASHNSLATGHILLAGSEAQKEAFLPKLASGEALGAWGLTEPGSGSDAAALKTKAEKVEGGWRLNGTKQFITQGSVAGVYVVMARTDPPPSPERKHQGISAFAFFRPERGLKVGRKEEKLGLTASDTAQLILEDLFVPEEALLGERGKGFYDVLRVLDGGRIGIAAMAVGLGQAALDYALAYAKGREAFGRPIAEFEGVSFKLAEAATELEAARLLYLKAAELKDAGRPFTLEAAQAKLFASEAAVKACDEAIQILGGYGYVKDYPVERYWRDARLTRIGEGTSEILKLVIARRLLEAV
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords acyl-CoA dehydrogenase
publication title Crystal structure of project ID TT0172 from Thermus thermophilus HB8
rcsb
source organism Thermus thermophilus
molecule tags Oxidoreductase
total genus 153
structure length 386
sequence length 386
chains with identical sequence B
ec nomenclature
pdb deposition date 2004-11-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00441 Acyl-CoA_dh_1 Acyl-CoA dehydrogenase, C-terminal domain
A PF02770 Acyl-CoA_dh_M Acyl-CoA dehydrogenase, middle domain
A PF02771 Acyl-CoA_dh_N Acyl-CoA dehydrogenase, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.540.10 Mainly Alpha Orthogonal Bundle Butyryl-Coa Dehydrogenase, subunit A; domain 1 Acyl-CoA dehydrogenase/oxidase, N-terminal domain 1ws9A01
1.20.140.10 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A; domain 3 Butyryl-CoA Dehydrogenase, subunit A, domain 3 1ws9A03
2.40.110.10 Mainly Beta Beta Barrel Butyryl-CoA Dehydrogenase, subunit A; domain 2 Butyryl-CoA Dehydrogenase, subunit A, domain 2 1ws9A02
2FONA 3X0XA 3GM6A 2Z1QA 4KCFA 2OT4A 3PFDA 1EGCA 3HWCA 4KTOA 2YYMA 3LG1A 2DDHA 3S7WA 3BNJA 2JBSA 1UDYA 3D9GA 3R7KA 3GQTA 3FO3A 1FS7A 4P13A 2RFQA 2C12A 2WBIA 4IV6A 3UU9A 4X28A 4JEKA 4N5FA 3MXLA 3D6BA 3NF4A 4DOYA 2VIGA 3SXQA 2YYJA 3BNFA 4W9UA 3EOMA 4U83A 1OAHA 2CX9A 1EGEA 2E81A 4L3XA 4L3YA 4O5MA 2DVLA 1FS9A 1T9GA 4Q5CA 4WJYA 4Q0TA 3B96A 4L38A 1SIRA 3F29A 1IS2A 4Q5BA 3II9A 2EBAA 5K3HA 2YYKA 4OO2A 4ZXVA 2RF7A 2OR0A 3FCJA 3OWMA 3UBRA 4L1FA 1RX0A 4X28C 3MDDA 4L3ZA 2IX5A 3BNHA 2J7AA 1UKWA 3RKHA 3MKHA 1FS8A 3LGQA 3GNCA 3MMOA 1WS9A 3SWOA 2JIFA 2RDZA 2D29A 2ZAFA 2PG0A 2YYLA 4ZYJA 2R0MA 1W07A 2VR0A 2JBTA 1QDBA 2A1TA 3MPIA 3P4TA 3TTBA 5K3GA 2C0UA 1SIQA 4RM7A 3SCEA 4M9AA 4NXLA 3D1IA 2UXWA 3SF6A 3MDEA 3L1TA 3M9VA 1JQIA 3MPJA 4Q1OA 3OWAA 2R0NA 4HR3A 1BUCA 2IX6A 3AFEA 1EGDA 2JBRA 1GU6A 5K3JA 3OIBA 3TORA 4Q4UA 1R2JA 3D9FA 4Q17A 4G5EA 1IVHA 4IRNA 3X0YA 5K3IA 1U8VA 3AFFA 2REHA 2ZO5A 3D9DA 4XVXA 2YYGA 3EONA 2YYIA 3BNGA 3D9EA 2E80A
chains in the Genus database with same CATH superfamily
2FONA 2AO2A 3X0XA 3GM6A 2Z1QA 4JIOA 4KSFA 1XFYA 4KCFA 2OT4A 3PFDA 1EGCA 3HWCA 4KTOA 2YYMA 3LG1A 1K8TA 2DDHA 3S7WA 4AKGA 3CE2A 2Q8GA 1LVCA 4FF3A 2ZDXA 3BNJA 4G97A 4LQSB 1Y8OA 3TZ2A 2CJ8A 2JBSA 1UDYA 3D9GA 3R7KA 1RJ1A 3GQTA 2VF1A 3FO3A 3Q22A 4MPNA 1FS7A 4P13A 5M4KA 2R03A 2RFQA 4E00A 1X8ZA 2BTZA 3KMLA 4HKRA 2C12A 2WBIA 4IV6A 4KS9A 2GBBA 3UU9A 1XFVA 1XFUA 2XQRB 4X28A 4JEKA 4N5FA 3MXLA 3D6BA 3NF4A 4DOYA 2VIGA 1XG2B 2FP2A 3SXQA 2YGWA 2YYJA 3BNFA 5M4NA 4W9UA 3EOMA 4U83A 1OAHA 1RJ4A 1S26A 2CX9A 1EGEA 2AZEA 2E81A 2FP1A 4L3XA 4O5MA 4L3YA 1SC5A 2Q8FA 4E01A 2DVLA 1FS9A 1T9GA 4Q5CA 4WJYA 3C3LA 2ZKJA 4Q0TA 3B96A 4L38A 5GJVE 1SIRA 3F29A 2BU5A 4MP7A 1IS2A 2BU8A 2F6LA 4Q5BA 3VADA 3II9A 3Q24A 1GJVA 4AKHA 1Y0VA 2EBAA 2LFWA 5K3HA 2EBFX 1Y8NA 2YYKA 4OO2A 2ZDYA 4ZXVA 1PI1A 2RF7A 2OR0A 4V25A 3FCJA 2PNRA 1GKZA 3OWMA 2BU7A 1K93A 3UBRA 2CJ4A 4MPCA 4FF1A 4L1FA 1RP3A 2E0AA 1RX0A 3C2PA 4X28C 3CRLA 4HKSA 3MDDA 5BRMA 1SK6A 5B6BA 5M4MA 3DJLA 4JIZA 2CJ6A 2OEVA 4L3ZA 1XFXA 5M4PA 2IX5A 4KSAA 5J71A 4H81A 2QR4A 1GKXA 3BNHA 3D2RA 3U33A 2J7AA 2XS8A 1UKWA 2R02A 3RKHA 3MKHA 4DZYA 1FS8A 2HJNA 3GNCA 3LGQA 3MMOA 4E02A 5B5VA 1WS9A 2BU2A 3SWOA 4QICA 2JIFA 2RDZA 4FF4A 2D29A 2ZAFA 2PG0A 2EBHX 2YYLA 3CRKA 4ZYJA 2R0MA 2R05A 1W07A 4H7QA 2VR0A 2JBTA 4MPEA 3X29A 4AKIA 1QDBA 2EC5A 4AI6A 1XFWA 2A1TA 1K90A 3MPIA 3P4TA 3TZ5A 3TTBA 5K3GA 5GJWE 2C0UA 1SIQA 3N0RA 4RM7A 3VKHA 3SCEA 2Q8IA 1X91A 1JM6A 2PO4A 4M9AA 1PK0A 4NXLA 3D1IA 2UXWA 3SF6A 3MDEA 3L1TA 3M9VA 3TZ4A 1JQIA 3MPJA 5EZ3A 4Q1OA 2BU6A 2Q8HA 3OWAA 1Y8PA 4H85A 4P79A 2R0NA 4J1VA 4HR3A 1BUCA 5B5WA 2IX6A 3AFEA 1EGDA 2JBRA 1GU6A 4LQQB 5K3JA 3OIBA 2CJ7A 3TORA 4Q4UA 1R2JA 3D9FA 1R3BA 3C46A 4Q17A 4G5EA 1IVHA 4V26A 4MP2A 4FF2A 3TZ0A 4FZ4A 5J6AA 2OEXA 4IRNA 2XS1A 3X0YA 5K3IA 1U8VA 3AFFA 2REHA 1XFZA 2ZO5A 4F0XA 3D9DA 4XVXA 2YYGA 5BRKA 3Q0AA 3VKGA 3Q23A 3EONA 2CJ5A 2YYIA 3BNGA 1X90A 3D9EA 2E80A 2OJQA
chains in the Genus database with same CATH topology
2FONA 3X0XA 3GM6A 2Z1QA 4KCFA 2OT4A 3PFDA 1EGCA 3HWCA 4KTOA 2YYMA 3LG1A 2DDHA 3S7WA 3BNJA 2JBSA 1UDYA 3D9GA 3R7KA 3GQTA 3FO3A 1FS7A 4P13A 2RFQA 2C12A 2WBIA 4IV6A 3UU9A 4X28A 4JEKA 4N5FA 3MXLA 3D6BA 3NF4A 4DOYA 2VIGA 3SXQA 2YYJA 3BNFA 4W9UA 3EOMA 4U83A 1OAHA 2CX9A 1EGEA 2E81A 4L3XA 4L3YA 4O5MA 2DVLA 1FS9A 1T9GA 4Q5CA 4WJYA 4Q0TA 3B96A 4L38A 1SIRA 3F29A 1IS2A 4Q5BA 3II9A 2EBAA 5K3HA 2YYKA 4OO2A 4ZXVA 2RF7A 2OR0A 3FCJA 3OWMA 3UBRA 4L1FA 1RX0A 4X28C 3MDDA 4L3ZA 2IX5A 3BNHA 2J7AA 1UKWA 3RKHA 3MKHA 1FS8A 3LGQA 3GNCA 3MMOA 1WS9A 3SWOA 2JIFA 2RDZA 2D29A 2ZAFA 2PG0A 2YYLA 4ZYJA 2R0MA 1W07A 2VR0A 2JBTA 1QDBA 2A1TA 3MPIA 3P4TA 3TTBA 5K3GA 2C0UA 1SIQA 4RM7A 3SCEA 4M9AA 4NXLA 3D1IA 2UXWA 3SF6A 3MDEA 3L1TA 3M9VA 1JQIA 3MPJA 4Q1OA 3OWAA 2R0NA 4HR3A 1BUCA 2IX6A 3AFEA 1EGDA 2JBRA 1GU6A 5K3JA 3OIBA 3TORA 4Q4UA 1R2JA 3D9FA 4Q17A 4G5EA 1IVHA 4IRNA 3X0YA 5K3IA 1U8VA 3AFFA 2REHA 2ZO5A 3D9DA 4XVXA 2YYGA 3EONA 2YYIA 3BNGA 3D9EA 2E80A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2FON A;  3X0X A;  3GM6 A;  2Z1Q A;  4KCF A;  2OT4 A;  3PFD A;  1EGC A;  3HWC A;  4KTO A;  2YYM A;  3LG1 A;  2DDH A;  3S7W A;  3BNJ A;  2JBS A;  1UDY A;  3D9G A;  3R7K A;  3GQT A;  3FO3 A;  1FS7 A;  4P13 A;  2RFQ A;  2C12 A;  2WBI A;  4IV6 A;  3UU9 A;  4X28 A;  4JEK A;  4N5F A;  3MXL A;  3D6B A;  3NF4 A;  4DOY A;  2VIG A;  3SXQ A;  2YYJ A;  3BNF A;  4W9U A;  3EOM A;  4U83 A;  1OAH A;  2CX9 A;  1EGE A;  2E81 A;  4L3X A;  4L3Y A;  4O5M A;  2DVL A;  1FS9 A;  1T9G A;  4Q5C A;  4WJY A;  4Q0T A;  3B96 A;  4L38 A;  1SIR A;  3F29 A;  1IS2 A;  4Q5B A;  3II9 A;  2EBA A;  5K3H A;  2YYK A;  4OO2 A;  4ZXV A;  2RF7 A;  2OR0 A;  3FCJ A;  3OWM A;  3UBR A;  4L1F A;  1RX0 A;  4X28 C;  3MDD A;  4L3Z A;  2IX5 A;  3BNH A;  2J7A A;  1UKW A;  3RKH A;  3MKH A;  1FS8 A;  3LGQ A;  3GNC A;  3MMO A;  1WS9 A;  3SWO A;  2JIF A;  2RDZ A;  2D29 A;  2ZAF A;  2PG0 A;  2YYL A;  4ZYJ A;  2R0M A;  1W07 A;  2VR0 A;  2JBT A;  1QDB A;  2A1T A;  3MPI A;  3P4T A;  3TTB A;  5K3G A;  2C0U A;  1SIQ A;  4RM7 A;  3SCE A;  4M9A A;  4NXL A;  3D1I A;  2UXW A;  3SF6 A;  3MDE A;  3L1T A;  3M9V A;  1JQI A;  3MPJ A;  4Q1O A;  3OWA A;  2R0N A;  4HR3 A;  1BUC A;  2IX6 A;  3AFE A;  1EGD A;  2JBR A;  1GU6 A;  5K3J A;  3OIB A;  3TOR A;  4Q4U A;  1R2J A;  3D9F A;  4Q17 A;  4G5E A;  1IVH A;  4IRN A;  3X0Y A;  5K3I A;  1U8V A;  3AFF A;  2REH A;  2ZO5 A;  3D9D A;  4XVX A;  2YYG A;  3EON A;  2YYI A;  3BNG A;  3D9E A;  2E80 A; 
#chains in the Genus database with same CATH topology
 2FON A;  2AO2 A;  3X0X A;  3GM6 A;  2Z1Q A;  4JIO A;  4KSF A;  1XFY A;  4KCF A;  2OT4 A;  3PFD A;  1EGC A;  3HWC A;  4KTO A;  2YYM A;  3LG1 A;  1K8T A;  2DDH A;  3S7W A;  4AKG A;  3CE2 A;  2Q8G A;  1LVC A;  4FF3 A;  2ZDX A;  3BNJ A;  4G97 A;  4LQS B;  1Y8O A;  3TZ2 A;  2CJ8 A;  2JBS A;  1UDY A;  3D9G A;  3R7K A;  1RJ1 A;  3GQT A;  2VF1 A;  3FO3 A;  3Q22 A;  4MPN A;  1FS7 A;  4P13 A;  5M4K A;  2R03 A;  2RFQ A;  4E00 A;  1X8Z A;  2BTZ A;  3KML A;  4HKR A;  2C12 A;  2WBI A;  4IV6 A;  4KS9 A;  2GBB A;  3UU9 A;  1XFV A;  1XFU A;  2XQR B;  4X28 A;  4JEK A;  4N5F A;  3MXL A;  3D6B A;  3NF4 A;  4DOY A;  2VIG A;  1XG2 B;  2FP2 A;  3SXQ A;  2YGW A;  2YYJ A;  3BNF A;  5M4N A;  4W9U A;  3EOM A;  4U83 A;  1OAH A;  1RJ4 A;  1S26 A;  2CX9 A;  1EGE A;  2AZE A;  2E81 A;  2FP1 A;  4L3X A;  4O5M A;  4L3Y A;  1SC5 A;  2Q8F A;  4E01 A;  2DVL A;  1FS9 A;  1T9G A;  4Q5C A;  4WJY A;  3C3L A;  2ZKJ A;  4Q0T A;  3B96 A;  4L38 A;  5GJV E;  1SIR A;  3F29 A;  2BU5 A;  4MP7 A;  1IS2 A;  2BU8 A;  2F6L A;  4Q5B A;  3VAD A;  3II9 A;  3Q24 A;  1GJV A;  4AKH A;  1Y0V A;  2EBA A;  2LFW A;  5K3H A;  2EBF X;  1Y8N A;  2YYK A;  4OO2 A;  2ZDY A;  4ZXV A;  1PI1 A;  2RF7 A;  2OR0 A;  4V25 A;  3FCJ A;  2PNR A;  1GKZ A;  3OWM A;  2BU7 A;  1K93 A;  3UBR A;  2CJ4 A;  4MPC A;  4FF1 A;  4L1F A;  1RP3 A;  2E0A A;  1RX0 A;  3C2P A;  4X28 C;  3CRL A;  4HKS A;  3MDD A;  5BRM A;  1SK6 A;  5B6B A;  5M4M A;  3DJL A;  4JIZ A;  2CJ6 A;  2OEV A;  4L3Z A;  1XFX A;  5M4P A;  2IX5 A;  4KSA A;  5J71 A;  4H81 A;  2QR4 A;  1GKX A;  3BNH A;  3D2R A;  3U33 A;  2J7A A;  2XS8 A;  1UKW A;  2R02 A;  3RKH A;  3MKH A;  4DZY A;  1FS8 A;  2HJN A;  3GNC A;  3LGQ A;  3MMO A;  4E02 A;  5B5V A;  1WS9 A;  2BU2 A;  3SWO A;  4QIC A;  2JIF A;  2RDZ A;  4FF4 A;  2D29 A;  2ZAF A;  2PG0 A;  2EBH X;  2YYL A;  3CRK A;  4ZYJ A;  2R0M A;  2R05 A;  1W07 A;  4H7Q A;  2VR0 A;  2JBT A;  4MPE A;  3X29 A;  4AKI A;  1QDB A;  2EC5 A;  4AI6 A;  1XFW A;  2A1T A;  1K90 A;  3MPI A;  3P4T A;  3TZ5 A;  3TTB A;  5K3G A;  5GJW E;  2C0U A;  1SIQ A;  3N0R A;  4RM7 A;  3VKH A;  3SCE A;  2Q8I A;  1X91 A;  1JM6 A;  2PO4 A;  4M9A A;  1PK0 A;  4NXL A;  3D1I A;  2UXW A;  3SF6 A;  3MDE A;  3L1T A;  3M9V A;  3TZ4 A;  1JQI A;  3MPJ A;  5EZ3 A;  4Q1O A;  2BU6 A;  2Q8H A;  3OWA A;  1Y8P A;  4H85 A;  4P79 A;  2R0N A;  4J1V A;  4HR3 A;  1BUC A;  5B5W A;  2IX6 A;  3AFE A;  1EGD A;  2JBR A;  1GU6 A;  4LQQ B;  5K3J A;  3OIB A;  2CJ7 A;  3TOR A;  4Q4U A;  1R2J A;  3D9F A;  1R3B A;  3C46 A;  4Q17 A;  4G5E A;  1IVH A;  4V26 A;  4MP2 A;  4FF2 A;  3TZ0 A;  4FZ4 A;  5J6A A;  2OEX A;  4IRN A;  2XS1 A;  3X0Y A;  5K3I A;  1U8V A;  3AFF A;  2REH A;  1XFZ A;  2ZO5 A;  4F0X A;  3D9D A;  4XVX A;  2YYG A;  5BRK A;  3Q0A A;  3VKG A;  3Q23 A;  3EON A;  2CJ5 A;  2YYI A;  3BNG A;  1X90 A;  3D9E A;  2E80 A;  2OJQ A; 
#chains in the Genus database with same CATH homology
 2FON A;  3X0X A;  3GM6 A;  2Z1Q A;  4KCF A;  2OT4 A;  3PFD A;  1EGC A;  3HWC A;  4KTO A;  2YYM A;  3LG1 A;  2DDH A;  3S7W A;  3BNJ A;  2JBS A;  1UDY A;  3D9G A;  3R7K A;  3GQT A;  3FO3 A;  1FS7 A;  4P13 A;  2RFQ A;  2C12 A;  2WBI A;  4IV6 A;  3UU9 A;  4X28 A;  4JEK A;  4N5F A;  3MXL A;  3D6B A;  3NF4 A;  4DOY A;  2VIG A;  3SXQ A;  2YYJ A;  3BNF A;  4W9U A;  3EOM A;  4U83 A;  1OAH A;  2CX9 A;  1EGE A;  2E81 A;  4L3X A;  4L3Y A;  4O5M A;  2DVL A;  1FS9 A;  1T9G A;  4Q5C A;  4WJY A;  4Q0T A;  3B96 A;  4L38 A;  1SIR A;  3F29 A;  1IS2 A;  4Q5B A;  3II9 A;  2EBA A;  5K3H A;  2YYK A;  4OO2 A;  4ZXV A;  2RF7 A;  2OR0 A;  3FCJ A;  3OWM A;  3UBR A;  4L1F A;  1RX0 A;  4X28 C;  3MDD A;  4L3Z A;  2IX5 A;  3BNH A;  2J7A A;  1UKW A;  3RKH A;  3MKH A;  1FS8 A;  3LGQ A;  3GNC A;  3MMO A;  1WS9 A;  3SWO A;  2JIF A;  2RDZ A;  2D29 A;  2ZAF A;  2PG0 A;  2YYL A;  4ZYJ A;  2R0M A;  1W07 A;  2VR0 A;  2JBT A;  1QDB A;  2A1T A;  3MPI A;  3P4T A;  3TTB A;  5K3G A;  2C0U A;  1SIQ A;  4RM7 A;  3SCE A;  4M9A A;  4NXL A;  3D1I A;  2UXW A;  3SF6 A;  3MDE A;  3L1T A;  3M9V A;  1JQI A;  3MPJ A;  4Q1O A;  3OWA A;  2R0N A;  4HR3 A;  1BUC A;  2IX6 A;  3AFE A;  1EGD A;  2JBR A;  1GU6 A;  5K3J A;  3OIB A;  3TOR A;  4Q4U A;  1R2J A;  3D9F A;  4Q17 A;  4G5E A;  1IVH A;  4IRN A;  3X0Y A;  5K3I A;  1U8V A;  3AFF A;  2REH A;  2ZO5 A;  3D9D A;  4XVX A;  2YYG A;  3EON A;  2YYI A;  3BNG A;  3D9E A;  2E80 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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