1WS9A

Crystal structure of project id tt0172 from thermus thermophilus hb8
Total Genus 153
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
153
sequence length
386
structure length
386
Chain Sequence
b'GLWFEEGAEERQVLGPFREFLKAEVAPGAAERDRTGAFPWDLVRKLAEFGVFGALVPEAYGGAGLSTRLFARMVEAIAYYDGALALTVASHNSLATGHILLAGSEAQKEAFLPKLASGEALGAWGLTEPGSGSDAAALKTKAEKVEGGWRLNGTKQFITQGSVAGVYVVMARTDPPPSPERKHQGISAFAFFRPERGLKVGRKEEKLGLTASDTAQLILEDLFVPEEALLGERGKGFYDVLRVLDGGRIGIAAMAVGLGQAALDYALAYAKGREAFGRPIAEFEGVSFKLAEAATELEAARLLYLKAAELKDAGRPFTLEAAQAKLFASEAAVKACDEAIQILGGYGYVKDYPVERYWRDARLTRIGEGTSEILKLVIARRLLEAV'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords acyl-CoA dehydrogenase
publication title Crystal structure of project ID TT0172 from Thermus thermophilus HB8
rcsb
source organism Thermus thermophilus
molecule tags Oxidoreductase
total genus 153
structure length 386
sequence length 386
chains with identical sequence B
ec nomenclature
pdb deposition date 2004-11-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00441 Acyl-CoA_dh_1 Acyl-CoA dehydrogenase, C-terminal domain
A PF02770 Acyl-CoA_dh_M Acyl-CoA dehydrogenase, middle domain
A PF02771 Acyl-CoA_dh_N Acyl-CoA dehydrogenase, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.540.10 Mainly Alpha Orthogonal Bundle Butyryl-Coa Dehydrogenase, subunit A; domain 1 Acyl-CoA dehydrogenase/oxidase, N-terminal domain 1ws9A01
1.20.140.10 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A; domain 3 Butyryl-CoA Dehydrogenase, subunit A, domain 3 1ws9A03
2.40.110.10 Mainly Beta Beta Barrel Butyryl-CoA Dehydrogenase, subunit A; domain 2 Butyryl-CoA Dehydrogenase, subunit A, domain 2 1ws9A02
2Z1QA 3BNFA 3SF6A 3TTBA 4L3YA 1BUCA 1FS7A 2R0NA 4O5MA 1OAHA 4IV6A 3GM6A 4Q5BA 4XVXA 3L1TA 3HWCA 2IX6A 3AFFA 3UBRA 2YYLA 4Q0TA 1SIRA 1U8VA 2RFQA 3BNJA 2D29A 4ZXVA 2OR0A 4W9UA 4M9AA 3M9VA 3NF4A 1R2JA 2JIFA 2J7AA 4G5EA 3OWMA 2JBRA 3D9DA 4Q4UA 4X28A 4ZYJA 3BNGA 3LGQA 4Q1OA 5K3IA 1FS8A 3SWOA 2YYMA 4L3ZA 1EGEA 2C0UA 3X0XA 4DOYA 2ZO5A 1EGCA 4JEKA 2RDZA 4Q5CA 3S7WA 3II9A 2VIGA 1JQIA 1GU6A 2DDHA 3UU9A 2YYKA 3MMOA 3P4TA 3B96A 3SCEA 2ZAFA 3AFEA 3MDEA 3OWAA 2A1TA 3MPJA 4L38A 4RM7A 2YYGA 3EOMA 2R0MA 3FCJA 3PFDA 2REHA 3EONA 4KTOA 5K3GA 2RF7A 2UXWA 3BNHA 4WJYA 4KCFA 1UDYA 1EGDA 3D9GA 3D6BA 4OO2A 4L3XA 2E81A 1UKWA 4P13A 5K3HA 1W07A 2EBAA 2VR0A 1FS9A 3F29A 3LG1A 2OT4A 3D9FA 3D9EA 5K3JA 2WBIA 4X28C 3MDDA 4HR3A 3TORA 3GNCA 2IX5A 3MKHA 2YYJA 1T9GA 3SXQA 2JBSA 2DVLA 3MXLA 3OIBA 1IS2A 2PG0A 4Q17A 3MPIA 3R7KA 2C12A 3FO3A 1SIQA 2JBTA 2YYIA 2CX9A 1RX0A 1IVHA 2FONA 4IRNA 2E80A 3GQTA 3X0YA 3RKHA 4L1FA 1QDBA 4NXLA 4U83A 4N5FA 3D1IA 1WS9A
chains in the Genus database with same CATH superfamily
2Z1QA 2PNRA 3SF6A 3BNFA 1Y0VA 2VF1A 4L3YA 3TTBA 3Q24A 2AO2A 4P79A 1BUCA 1FS7A 2R0NA 4O5MA 4FF4A 4V25A 1OAHA 5B6BA 1RJ4A 4IV6A 4FZ4A 3GM6A 4Q5BA 4XVXA 2BU8A 3L1TA 5BRKA 3HWCA 1Y8OA 1GJVA 1RJ1A 2IX6A 2OEVA 3AFFA 2CJ4A 3UBRA 2YYLA 4Q0TA 1SIRA 1U8VA 1XFWA 2RFQA 2E0AA 2XS8A 1Y8PA 3BNJA 2D29A 2XQRB 4E01A 4ZXVA 5M4MA 2OEXA 3N0RA 2OR0A 4W9UA 3KMLA 2FP1A 3CRKA 4M9AA 3M9VA 3NF4A 1R2JA 2AZEA 2JIFA 2J7AA 4G5EA 3OWMA 4MP2A 5J71A 4MP7A 1X8ZA 2OJQA 2JBRA 3D9DA 4Q4UA 4X28A 2PO4A 4LQQB 3C2PA 4ZYJA 2EBFX 3BNGA 3LGQA 4Q1OA 5K3IA 2EC5A 2F6LA 1K93A 1FS8A 3D2RA 4JIOA 4KSFA 3VKGA 4J1VA 3SWOA 3Q22A 4H85A 2YYMA 4L3ZA 4MPCA 2R05A 4HKRA 3Q0AA 1EGEA 4AKGA 2ZDXA 4FF3A 4AKHA 2C0UA 3X0XA 4DOYA 2Q8IA 4AKIA 5EZ3A 2ZO5A 3TZ0A 1EGCA 4JEKA 2RDZA 4Q5CA 3S7WA 2HJNA 3TZ4A 2BU7A 3II9A 3VKHA 2VIGA 1JQIA 5B5WA 1GU6A 2DDHA 3UU9A 2YYKA 3MMOA 3P4TA 1XFYA 5J6AA 3B96A 3CE2A 3SCEA 2ZAFA 1K90A 4DZYA 1RP3A 4FF2A 3AFEA 5B5VA 3MDEA 3OWAA 2BTZA 2ZDYA 2A1TA 3MPJA 4L38A 5M4KA 2GBBA 4RM7A 3U33A 2CJ5A 2YYGA 3EOMA 5M4PA 2R0MA 3FCJA 3PFDA 4G97A 2REHA 3EONA 4KTOA 5K3GA 1LVCA 2R02A 2UXWA 1S26A 2RF7A 3BNHA 4WJYA 4F0XA 2Q8GA 4KCFA 1UDYA 1EGDA 3C3LA 3D9GA 2BU2A 5GJVE 1XFUA 3D6BA 4OO2A 4L3XA 2E81A 2Q8HA 3VADA 1UKWA 2Q8FA 4P13A 5K3HA 4KSAA 1XFXA 2CJ6A 1W07A 1PK0A 2QR4A 1K8TA 2ZKJA 4H7QA 2XS1A 2EBAA 2VR0A 1FS9A 3F29A 2YGWA 3LG1A 4JIZA 3D9FA 4V26A 3D9EA 2OT4A 3X29A 5K3JA 3TZ5A 2WBIA 4X28C 4KS9A 3MDDA 4HR3A 3TZ2A 3TORA 3GNCA 4HKSA 2IX5A 3MKHA 1SK6A 2YYJA 3C46A 1T9GA 3SXQA 5BRMA 2JBSA 2DVLA 3MXLA 3OIBA 1IS2A 2PG0A 2FP2A 4Q17A 1JM6A 4E02A 3MPIA 1XFZA 3R7KA 2CJ7A 2C12A 4H81A 4MPNA 1Y8NA 3FO3A 1SIQA 3Q23A 2BU5A 2JBTA 1GKZA 1R3BA 2YYIA 2CX9A 1RX0A 1XFVA 1PI1A 4AI6A 1IVHA 1GKXA 2BU6A 2FONA 1X90A 2LFWA 2CJ8A 4IRNA 2E80A 4MPEA 4QICA 5M4NA 2R03A 3GQTA 3X0YA 1X91A 3RKHA 4L1FA 1QDBA 4LQSB 1XG2B 5GJWE 4NXLA 4U83A 4E00A 4FF1A 3DJLA 4N5FA 3D1IA 2EBHX 3CRLA 1WS9A 1SC5A
chains in the Genus database with same CATH topology
2Z1QA 3BNFA 3SF6A 3TTBA 4L3YA 1BUCA 1FS7A 2R0NA 4O5MA 1OAHA 4IV6A 3GM6A 4Q5BA 4XVXA 3L1TA 3HWCA 2IX6A 3AFFA 3UBRA 2YYLA 4Q0TA 1SIRA 1U8VA 2RFQA 3BNJA 2D29A 4ZXVA 2OR0A 4W9UA 4M9AA 3M9VA 3NF4A 1R2JA 2JIFA 2J7AA 4G5EA 3OWMA 2JBRA 3D9DA 4Q4UA 4X28A 4ZYJA 3BNGA 3LGQA 4Q1OA 5K3IA 1FS8A 3SWOA 2YYMA 4L3ZA 1EGEA 2C0UA 3X0XA 4DOYA 2ZO5A 1EGCA 4JEKA 2RDZA 4Q5CA 3S7WA 3II9A 2VIGA 1JQIA 1GU6A 2DDHA 3UU9A 2YYKA 3MMOA 3P4TA 3B96A 3SCEA 2ZAFA 3AFEA 3MDEA 3OWAA 2A1TA 3MPJA 4L38A 4RM7A 2YYGA 3EOMA 2R0MA 3FCJA 3PFDA 2REHA 3EONA 4KTOA 5K3GA 2RF7A 2UXWA 3BNHA 4WJYA 4KCFA 1UDYA 1EGDA 3D9GA 3D6BA 4OO2A 4L3XA 2E81A 1UKWA 4P13A 5K3HA 1W07A 2EBAA 2VR0A 1FS9A 3F29A 3LG1A 2OT4A 3D9FA 3D9EA 5K3JA 2WBIA 4X28C 3MDDA 4HR3A 3TORA 3GNCA 2IX5A 3MKHA 2YYJA 1T9GA 3SXQA 2JBSA 2DVLA 3MXLA 3OIBA 1IS2A 2PG0A 4Q17A 3MPIA 3R7KA 2C12A 3FO3A 1SIQA 2JBTA 2YYIA 2CX9A 1RX0A 1IVHA 2FONA 4IRNA 2E80A 3GQTA 3X0YA 3RKHA 4L1FA 1QDBA 4NXLA 4U83A 4N5FA 3D1IA 1WS9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2Z1Q A;  3BNF A;  3SF6 A;  3TTB A;  4L3Y A;  1BUC A;  1FS7 A;  2R0N A;  4O5M A;  1OAH A;  4IV6 A;  3GM6 A;  4Q5B A;  4XVX A;  3L1T A;  3HWC A;  2IX6 A;  3AFF A;  3UBR A;  2YYL A;  4Q0T A;  1SIR A;  1U8V A;  2RFQ A;  3BNJ A;  2D29 A;  4ZXV A;  2OR0 A;  4W9U A;  4M9A A;  3M9V A;  3NF4 A;  1R2J A;  2JIF A;  2J7A A;  4G5E A;  3OWM A;  2JBR A;  3D9D A;  4Q4U A;  4X28 A;  4ZYJ A;  3BNG A;  3LGQ A;  4Q1O A;  5K3I A;  1FS8 A;  3SWO A;  2YYM A;  4L3Z A;  1EGE A;  2C0U A;  3X0X A;  4DOY A;  2ZO5 A;  1EGC A;  4JEK A;  2RDZ A;  4Q5C A;  3S7W A;  3II9 A;  2VIG A;  1JQI A;  1GU6 A;  2DDH A;  3UU9 A;  2YYK A;  3MMO A;  3P4T A;  3B96 A;  3SCE A;  2ZAF A;  3AFE A;  3MDE A;  3OWA A;  2A1T A;  3MPJ A;  4L38 A;  4RM7 A;  2YYG A;  3EOM A;  2R0M A;  3FCJ A;  3PFD A;  2REH A;  3EON A;  4KTO A;  5K3G A;  2RF7 A;  2UXW A;  3BNH A;  4WJY A;  4KCF A;  1UDY A;  1EGD A;  3D9G A;  3D6B A;  4OO2 A;  4L3X A;  2E81 A;  1UKW A;  4P13 A;  5K3H A;  1W07 A;  2EBA A;  2VR0 A;  1FS9 A;  3F29 A;  3LG1 A;  2OT4 A;  3D9F A;  3D9E A;  5K3J A;  2WBI A;  4X28 C;  3MDD A;  4HR3 A;  3TOR A;  3GNC A;  2IX5 A;  3MKH A;  2YYJ A;  1T9G A;  3SXQ A;  2JBS A;  2DVL A;  3MXL A;  3OIB A;  1IS2 A;  2PG0 A;  4Q17 A;  3MPI A;  3R7K A;  2C12 A;  3FO3 A;  1SIQ A;  2JBT A;  2YYI A;  2CX9 A;  1RX0 A;  1IVH A;  2FON A;  4IRN A;  2E80 A;  3GQT A;  3X0Y A;  3RKH A;  4L1F A;  1QDB A;  4NXL A;  4U83 A;  4N5F A;  3D1I A;  1WS9 A; 
#chains in the Genus database with same CATH topology
 2Z1Q A;  2PNR A;  3SF6 A;  3BNF A;  1Y0V A;  2VF1 A;  4L3Y A;  3TTB A;  3Q24 A;  2AO2 A;  4P79 A;  1BUC A;  1FS7 A;  2R0N A;  4O5M A;  4FF4 A;  4V25 A;  1OAH A;  5B6B A;  1RJ4 A;  4IV6 A;  4FZ4 A;  3GM6 A;  4Q5B A;  4XVX A;  2BU8 A;  3L1T A;  5BRK A;  3HWC A;  1Y8O A;  1GJV A;  1RJ1 A;  2IX6 A;  2OEV A;  3AFF A;  2CJ4 A;  3UBR A;  2YYL A;  4Q0T A;  1SIR A;  1U8V A;  1XFW A;  2RFQ A;  2E0A A;  2XS8 A;  1Y8P A;  3BNJ A;  2D29 A;  2XQR B;  4E01 A;  4ZXV A;  5M4M A;  2OEX A;  3N0R A;  2OR0 A;  4W9U A;  3KML A;  2FP1 A;  3CRK A;  4M9A A;  3M9V A;  3NF4 A;  1R2J A;  2AZE A;  2JIF A;  2J7A A;  4G5E A;  3OWM A;  4MP2 A;  5J71 A;  4MP7 A;  1X8Z A;  2OJQ A;  2JBR A;  3D9D A;  4Q4U A;  4X28 A;  2PO4 A;  4LQQ B;  3C2P A;  4ZYJ A;  2EBF X;  3BNG A;  3LGQ A;  4Q1O A;  5K3I A;  2EC5 A;  2F6L A;  1K93 A;  1FS8 A;  3D2R A;  4JIO A;  4KSF A;  3VKG A;  4J1V A;  3SWO A;  3Q22 A;  4H85 A;  2YYM A;  4L3Z A;  4MPC A;  2R05 A;  4HKR A;  3Q0A A;  1EGE A;  4AKG A;  2ZDX A;  4FF3 A;  4AKH A;  2C0U A;  3X0X A;  4DOY A;  2Q8I A;  4AKI A;  5EZ3 A;  2ZO5 A;  3TZ0 A;  1EGC A;  4JEK A;  2RDZ A;  4Q5C A;  3S7W A;  2HJN A;  3TZ4 A;  2BU7 A;  3II9 A;  3VKH A;  2VIG A;  1JQI A;  5B5W A;  1GU6 A;  2DDH A;  3UU9 A;  2YYK A;  3MMO A;  3P4T A;  1XFY A;  5J6A A;  3B96 A;  3CE2 A;  3SCE A;  2ZAF A;  1K90 A;  4DZY A;  1RP3 A;  4FF2 A;  3AFE A;  5B5V A;  3MDE A;  3OWA A;  2BTZ A;  2ZDY A;  2A1T A;  3MPJ A;  4L38 A;  5M4K A;  2GBB A;  4RM7 A;  3U33 A;  2CJ5 A;  2YYG A;  3EOM A;  5M4P A;  2R0M A;  3FCJ A;  3PFD A;  4G97 A;  2REH A;  3EON A;  4KTO A;  5K3G A;  1LVC A;  2R02 A;  2UXW A;  1S26 A;  2RF7 A;  3BNH A;  4WJY A;  4F0X A;  2Q8G A;  4KCF A;  1UDY A;  1EGD A;  3C3L A;  3D9G A;  2BU2 A;  5GJV E;  1XFU A;  3D6B A;  4OO2 A;  4L3X A;  2E81 A;  2Q8H A;  3VAD A;  1UKW A;  2Q8F A;  4P13 A;  5K3H A;  4KSA A;  1XFX A;  2CJ6 A;  1W07 A;  1PK0 A;  2QR4 A;  1K8T A;  2ZKJ A;  4H7Q A;  2XS1 A;  2EBA A;  2VR0 A;  1FS9 A;  3F29 A;  2YGW A;  3LG1 A;  4JIZ A;  3D9F A;  4V26 A;  3D9E A;  2OT4 A;  3X29 A;  5K3J A;  3TZ5 A;  2WBI A;  4X28 C;  4KS9 A;  3MDD A;  4HR3 A;  3TZ2 A;  3TOR A;  3GNC A;  4HKS A;  2IX5 A;  3MKH A;  1SK6 A;  2YYJ A;  3C46 A;  1T9G A;  3SXQ A;  5BRM A;  2JBS A;  2DVL A;  3MXL A;  3OIB A;  1IS2 A;  2PG0 A;  2FP2 A;  4Q17 A;  1JM6 A;  4E02 A;  3MPI A;  1XFZ A;  3R7K A;  2CJ7 A;  2C12 A;  4H81 A;  4MPN A;  1Y8N A;  3FO3 A;  1SIQ A;  3Q23 A;  2BU5 A;  2JBT A;  1GKZ A;  1R3B A;  2YYI A;  2CX9 A;  1RX0 A;  1XFV A;  1PI1 A;  4AI6 A;  1IVH A;  1GKX A;  2BU6 A;  2FON A;  1X90 A;  2LFW A;  2CJ8 A;  4IRN A;  2E80 A;  4MPE A;  4QIC A;  5M4N A;  2R03 A;  3GQT A;  3X0Y A;  1X91 A;  3RKH A;  4L1F A;  1QDB A;  4LQS B;  1XG2 B;  5GJW E;  4NXL A;  4U83 A;  4E00 A;  4FF1 A;  3DJL A;  4N5F A;  3D1I A;  2EBH X;  3CRL A;  1WS9 A;  1SC5 A; 
#chains in the Genus database with same CATH homology
 2Z1Q A;  3BNF A;  3SF6 A;  3TTB A;  4L3Y A;  1BUC A;  1FS7 A;  2R0N A;  4O5M A;  1OAH A;  4IV6 A;  3GM6 A;  4Q5B A;  4XVX A;  3L1T A;  3HWC A;  2IX6 A;  3AFF A;  3UBR A;  2YYL A;  4Q0T A;  1SIR A;  1U8V A;  2RFQ A;  3BNJ A;  2D29 A;  4ZXV A;  2OR0 A;  4W9U A;  4M9A A;  3M9V A;  3NF4 A;  1R2J A;  2JIF A;  2J7A A;  4G5E A;  3OWM A;  2JBR A;  3D9D A;  4Q4U A;  4X28 A;  4ZYJ A;  3BNG A;  3LGQ A;  4Q1O A;  5K3I A;  1FS8 A;  3SWO A;  2YYM A;  4L3Z A;  1EGE A;  2C0U A;  3X0X A;  4DOY A;  2ZO5 A;  1EGC A;  4JEK A;  2RDZ A;  4Q5C A;  3S7W A;  3II9 A;  2VIG A;  1JQI A;  1GU6 A;  2DDH A;  3UU9 A;  2YYK A;  3MMO A;  3P4T A;  3B96 A;  3SCE A;  2ZAF A;  3AFE A;  3MDE A;  3OWA A;  2A1T A;  3MPJ A;  4L38 A;  4RM7 A;  2YYG A;  3EOM A;  2R0M A;  3FCJ A;  3PFD A;  2REH A;  3EON A;  4KTO A;  5K3G A;  2RF7 A;  2UXW A;  3BNH A;  4WJY A;  4KCF A;  1UDY A;  1EGD A;  3D9G A;  3D6B A;  4OO2 A;  4L3X A;  2E81 A;  1UKW A;  4P13 A;  5K3H A;  1W07 A;  2EBA A;  2VR0 A;  1FS9 A;  3F29 A;  3LG1 A;  2OT4 A;  3D9F A;  3D9E A;  5K3J A;  2WBI A;  4X28 C;  3MDD A;  4HR3 A;  3TOR A;  3GNC A;  2IX5 A;  3MKH A;  2YYJ A;  1T9G A;  3SXQ A;  2JBS A;  2DVL A;  3MXL A;  3OIB A;  1IS2 A;  2PG0 A;  4Q17 A;  3MPI A;  3R7K A;  2C12 A;  3FO3 A;  1SIQ A;  2JBT A;  2YYI A;  2CX9 A;  1RX0 A;  1IVH A;  2FON A;  4IRN A;  2E80 A;  3GQT A;  3X0Y A;  3RKH A;  4L1F A;  1QDB A;  4NXL A;  4U83 A;  4N5F A;  3D1I A;  1WS9 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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