2DVLA

Crystal structure of project tt0160 from thermus thermophilus hb8
Total Genus 142
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
142
sequence length
370
structure length
370
Chain Sequence
LTQEQRLVLDAVRRVAREVLYPLAPEYDRKAEYPWPQLKALAELGLLGMTTPEEWGGVGLDSVTWALALEELAAADPSVAVIVSVTSGLPQYMLLRFGSEAQKRRYLVPLARGEWIGAFCLTEPQAGSDAKSLRAEARRVKGGFVLNGVKSWITSAGHAHLYVVMARTEKGISAFLVEKGTPGLSFGRPEEKMGLHAAHTAEVRLEEVFVPEENLLGEEGRGLAYALAGLDSGRVGVAAQAVGIARGAFEIAKAYAEEREQFGKKLKEHQAIAFKIADMHVKIAAARALVLEAARKKDRGERFTLEASAAKLFASAAAVEVTREAVQVLGGYGYHRDYRVERYYRDAKVTEIYEGTSEIQRLVIARELYR
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Acyl-CoA dehydrogenase
publication title Crystal structure of TT0160 from Thermus thermophilus HB8
rcsb
source organism Thermus thermophilus
molecule tags Oxidoreductase
total genus 142
structure length 370
sequence length 370
chains with identical sequence B
ec nomenclature
pdb deposition date 2006-07-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00441 Acyl-CoA_dh_1 Acyl-CoA dehydrogenase, C-terminal domain
A PF02770 Acyl-CoA_dh_M Acyl-CoA dehydrogenase, middle domain
A PF02771 Acyl-CoA_dh_N Acyl-CoA dehydrogenase, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.540.10 Mainly Alpha Orthogonal Bundle Butyryl-Coa Dehydrogenase, subunit A; domain 1 Acyl-CoA dehydrogenase/oxidase, N-terminal domain 2dvlA01
1.20.140.10 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A; domain 3 Butyryl-CoA Dehydrogenase, subunit A, domain 3 2dvlA03
2.40.110.10 Mainly Beta Beta Barrel Butyryl-CoA Dehydrogenase, subunit A; domain 2 Butyryl-CoA Dehydrogenase, subunit A, domain 2 2dvlA02
3OWMA 2YYMA 3D9EA 3PFDA 2YYKA 1W07A 3X0XA 3BNJA 2YYLA 2Z1QA 2C0UA 1FS8A 1OAHA 3II9A 2R0NA 1EGEA 2OR0A 2DDHA 2JBTA 3S7WA 3MXLA 3NF4A 1UDYA 3UU9A 2E80A 4L1FA 2VIGA 3HWCA 4X28C 3D9GA 3MDDA 2UXWA 1IVHA 4U83A 1JQIA 4P13A 4ZYJA 4OO2A 2D29A 2WBIA 1FS9A 4WJYA 4L3XA 3AFEA 3LG1A 3MPJA 4NXLA 1U8VA 4KTOA 2YYIA 3MPIA 3GM6A 3FCJA 4DOYA 3BNHA 4Q4UA 2OT4A 3MKHA 3BNGA 2JBRA 2RDZA 3OIBA 4X28A 5K3IA 1WS9A 3SCEA 2EBAA 3MMOA 1R2JA 2REHA 4ZXVA 1SIRA 2RFQA 2JBSA 3P4TA 3AFFA 3OWAA 4L3YA 4IRNA 4Q5CA 4RM7A 3SF6A 4Q0TA 2J7AA 3GNCA 2IX5A 3TORA 3B96A 3GQTA 2R0MA 3D1IA 4W9UA 3L1TA 3BNFA 4O5MA 3LGQA 5K3JA 2YYJA 4IV6A 3FO3A 4N5FA 1RX0A 2A1TA 3MDEA 2DVLA 4KCFA 2FONA 4XVXA 3D9FA 3D6BA 1T9GA 2PG0A 1QDBA 4L3ZA 1BUCA 5K3HA 1SIQA 1UKWA 2ZAFA 4JEKA 1EGDA 3M9VA 4L38A 3TTBA 2JIFA 2IX6A 4M9AA 5K3GA 4G5EA 3EOMA 2E81A 4Q17A 3D9DA 2VR0A 3F29A 2C12A 1IS2A 3EONA 4Q1OA 1FS7A 2RF7A 3RKHA 3X0YA 3SXQA 2CX9A 4HR3A 3R7KA 2YYGA 1EGCA 2ZO5A 4Q5BA 3SWOA 1GU6A 3UBRA
chains in the Genus database with same CATH superfamily
3OWMA 4F0XA 2YYMA 3D9EA 3PFDA 2VF1A 1X91A 2F6LA 2YYKA 1W07A 2XS8A 3X0XA 1GKXA 1SC5A 3BNJA 2YYLA 4DZYA 2EBHX 3C3LA 2Z1QA 2C0UA 1FS8A 2GBBA 1OAHA 4H85A 3II9A 2Q8HA 1SK6A 1XFUA 3KMLA 1XFVA 5M4KA 4E01A 2BU6A 3U33A 2R0NA 1EGEA 2OR0A 1Y8OA 5M4NA 2DDHA 3VKHA 2JBTA 2CJ6A 4MP7A 3S7WA 3MXLA 3NF4A 1UDYA 3UU9A 4HKRA 3Q24A 3D2RA 2BU5A 3Q22A 5GJWE 2E80A 4L1FA 2AZEA 2VIGA 1X8ZA 3HWCA 2R05A 4X28C 1GKZA 1K8TA 3VKGA 3D9GA 3Q23A 3MDDA 5J71A 2UXWA 1IVHA 4U83A 1JQIA 2PO4A 3TZ4A 4P13A 4G97A 4ZYJA 4OO2A 2D29A 1XG2B 2WBIA 4FF3A 4JIOA 1FS9A 4WJYA 4L3XA 3AFEA 3LG1A 3MPJA 4JIZA 5BRKA 4NXLA 1U8VA 4KTOA 2YYIA 3MPIA 3GM6A 3FCJA 4DOYA 2Q8IA 3BNHA 3CE2A 4Q4UA 4QICA 2FP2A 3MKHA 3BNGA 2JBRA 2BU8A 2OT4A 4AKHA 1LVCA 4MPCA 2RDZA 2AO2A 3OIBA 4X28A 5K3IA 1WS9A 2OEXA 4P79A 1PK0A 4E00A 1RJ1A 3SCEA 2EBAA 3MMOA 1R2JA 2REHA 1Y8PA 4V25A 1X90A 4ZXVA 4MPNA 3TZ2A 1SIRA 2RFQA 4KSAA 2JBSA 3P4TA 3AFFA 5B5VA 2E0AA 3OWAA 2HJNA 2OJQA 4H81A 4L3YA 4IRNA 4FZ4A 4MP2A 2OEVA 4Q5CA 2CJ7A 4RM7A 3SF6A 4MPEA 2J7AA 4Q0TA 4FF1A 2R03A 3GNCA 4AI6A 2IX5A 3TORA 3B96A 3GQTA 3DJLA 2R0MA 3D1IA 5M4PA 4W9UA 3L1TA 2CJ8A 5M4MA 3BNFA 4O5MA 3LGQA 5K3JA 2YYJA 2PNRA 4IV6A 3CRKA 3FO3A 2CJ5A 4N5FA 2FP1A 3TZ0A 2BTZA 5B5WA 5J6AA 1RX0A 2A1TA 3C46A 3MDEA 2DVLA 2ZDYA 1JM6A 3Q0AA 1XFZA 4KCFA 3X29A 2FONA 4XVXA 4AKGA 2BU2A 2ZDXA 3D9FA 4AKIA 3D6BA 5EZ3A 1T9GA 2PG0A 1QDBA 4L3ZA 1XFYA 5B6BA 1GJVA 1BUCA 5K3HA 1SIQA 1UKWA 5BRMA 2ZAFA 2Q8GA 3VADA 4JEKA 1K90A 4E02A 1XFXA 1EGDA 3M9VA 1PI1A 5GJVE 1S26A 2EBFX 4L38A 1Y8NA 2JIFA 2Q8FA 3TTBA 2IX6A 4M9AA 5K3GA 4G5EA 4LQQB 3EOMA 1R3BA 2E81A 4Q17A 3D9DA 2VR0A 3F29A 2C12A 2XS1A 3N0RA 1IS2A 4J1VA 3EONA 1RJ4A 4KS9A 3CRLA 1FS7A 4Q1OA 1RP3A 3C2PA 1XFWA 4H7QA 2RF7A 3RKHA 3X0YA 4V26A 4FF4A 3SXQA 2CX9A 4LQSB 4HR3A 3R7KA 2LFWA 2YYGA 1EGCA 2EC5A 2ZO5A 2ZKJA 4FF2A 2YGWA 4KSFA 3TZ5A 1Y0VA 2CJ4A 2R02A 4HKSA 4Q5BA 2BU7A 3SWOA 1GU6A 2XQRB 1K93A 3UBRA 2QR4A
chains in the Genus database with same CATH topology
3OWMA 2YYMA 3D9EA 3PFDA 2YYKA 1W07A 3X0XA 3BNJA 2YYLA 2Z1QA 2C0UA 1FS8A 1OAHA 3II9A 2R0NA 1EGEA 2OR0A 2DDHA 2JBTA 3S7WA 3MXLA 3NF4A 1UDYA 3UU9A 2E80A 4L1FA 2VIGA 3HWCA 4X28C 3D9GA 3MDDA 2UXWA 1IVHA 4U83A 1JQIA 4P13A 4ZYJA 4OO2A 2D29A 2WBIA 1FS9A 4WJYA 4L3XA 3AFEA 3LG1A 3MPJA 4NXLA 1U8VA 4KTOA 2YYIA 3MPIA 3GM6A 3FCJA 4DOYA 3BNHA 4Q4UA 2OT4A 3MKHA 3BNGA 2JBRA 2RDZA 3OIBA 4X28A 5K3IA 1WS9A 3SCEA 2EBAA 3MMOA 1R2JA 2REHA 4ZXVA 1SIRA 2RFQA 2JBSA 3P4TA 3AFFA 3OWAA 4L3YA 4IRNA 4Q5CA 4RM7A 3SF6A 4Q0TA 2J7AA 3GNCA 2IX5A 3TORA 3B96A 3GQTA 2R0MA 3D1IA 4W9UA 3L1TA 3BNFA 4O5MA 3LGQA 5K3JA 2YYJA 4IV6A 3FO3A 4N5FA 1RX0A 2A1TA 3MDEA 2DVLA 4KCFA 2FONA 4XVXA 3D9FA 3D6BA 1T9GA 2PG0A 1QDBA 4L3ZA 1BUCA 5K3HA 1SIQA 1UKWA 2ZAFA 4JEKA 1EGDA 3M9VA 4L38A 3TTBA 2JIFA 2IX6A 4M9AA 5K3GA 4G5EA 3EOMA 2E81A 4Q17A 3D9DA 2VR0A 3F29A 2C12A 1IS2A 3EONA 4Q1OA 1FS7A 2RF7A 3RKHA 3X0YA 3SXQA 2CX9A 4HR3A 3R7KA 2YYGA 1EGCA 2ZO5A 4Q5BA 3SWOA 1GU6A 3UBRA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3OWM A;  2YYM A;  3D9E A;  3PFD A;  2YYK A;  1W07 A;  3X0X A;  3BNJ A;  2YYL A;  2Z1Q A;  2C0U A;  1FS8 A;  1OAH A;  3II9 A;  2R0N A;  1EGE A;  2OR0 A;  2DDH A;  2JBT A;  3S7W A;  3MXL A;  3NF4 A;  1UDY A;  3UU9 A;  2E80 A;  4L1F A;  2VIG A;  3HWC A;  4X28 C;  3D9G A;  3MDD A;  2UXW A;  1IVH A;  4U83 A;  1JQI A;  4P13 A;  4ZYJ A;  4OO2 A;  2D29 A;  2WBI A;  1FS9 A;  4WJY A;  4L3X A;  3AFE A;  3LG1 A;  3MPJ A;  4NXL A;  1U8V A;  4KTO A;  2YYI A;  3MPI A;  3GM6 A;  3FCJ A;  4DOY A;  3BNH A;  4Q4U A;  2OT4 A;  3MKH A;  3BNG A;  2JBR A;  2RDZ A;  3OIB A;  4X28 A;  5K3I A;  1WS9 A;  3SCE A;  2EBA A;  3MMO A;  1R2J A;  2REH A;  4ZXV A;  1SIR A;  2RFQ A;  2JBS A;  3P4T A;  3AFF A;  3OWA A;  4L3Y A;  4IRN A;  4Q5C A;  4RM7 A;  3SF6 A;  4Q0T A;  2J7A A;  3GNC A;  2IX5 A;  3TOR A;  3B96 A;  3GQT A;  2R0M A;  3D1I A;  4W9U A;  3L1T A;  3BNF A;  4O5M A;  3LGQ A;  5K3J A;  2YYJ A;  4IV6 A;  3FO3 A;  4N5F A;  1RX0 A;  2A1T A;  3MDE A;  2DVL A;  4KCF A;  2FON A;  4XVX A;  3D9F A;  3D6B A;  1T9G A;  2PG0 A;  1QDB A;  4L3Z A;  1BUC A;  5K3H A;  1SIQ A;  1UKW A;  2ZAF A;  4JEK A;  1EGD A;  3M9V A;  4L38 A;  3TTB A;  2JIF A;  2IX6 A;  4M9A A;  5K3G A;  4G5E A;  3EOM A;  2E81 A;  4Q17 A;  3D9D A;  2VR0 A;  3F29 A;  2C12 A;  1IS2 A;  3EON A;  4Q1O A;  1FS7 A;  2RF7 A;  3RKH A;  3X0Y A;  3SXQ A;  2CX9 A;  4HR3 A;  3R7K A;  2YYG A;  1EGC A;  2ZO5 A;  4Q5B A;  3SWO A;  1GU6 A;  3UBR A; 
#chains in the Genus database with same CATH topology
 3OWM A;  4F0X A;  2YYM A;  3D9E A;  3PFD A;  2VF1 A;  1X91 A;  2F6L A;  2YYK A;  1W07 A;  2XS8 A;  3X0X A;  1GKX A;  1SC5 A;  3BNJ A;  2YYL A;  4DZY A;  2EBH X;  3C3L A;  2Z1Q A;  2C0U A;  1FS8 A;  2GBB A;  1OAH A;  4H85 A;  3II9 A;  2Q8H A;  1SK6 A;  1XFU A;  3KML A;  1XFV A;  5M4K A;  4E01 A;  2BU6 A;  3U33 A;  2R0N A;  1EGE A;  2OR0 A;  1Y8O A;  5M4N A;  2DDH A;  3VKH A;  2JBT A;  2CJ6 A;  4MP7 A;  3S7W A;  3MXL A;  3NF4 A;  1UDY A;  3UU9 A;  4HKR A;  3Q24 A;  3D2R A;  2BU5 A;  3Q22 A;  5GJW E;  2E80 A;  4L1F A;  2AZE A;  2VIG A;  1X8Z A;  3HWC A;  2R05 A;  4X28 C;  1GKZ A;  1K8T A;  3VKG A;  3D9G A;  3Q23 A;  3MDD A;  5J71 A;  2UXW A;  1IVH A;  4U83 A;  1JQI A;  2PO4 A;  3TZ4 A;  4P13 A;  4G97 A;  4ZYJ A;  4OO2 A;  2D29 A;  1XG2 B;  2WBI A;  4FF3 A;  4JIO A;  1FS9 A;  4WJY A;  4L3X A;  3AFE A;  3LG1 A;  3MPJ A;  4JIZ A;  5BRK A;  4NXL A;  1U8V A;  4KTO A;  2YYI A;  3MPI A;  3GM6 A;  3FCJ A;  4DOY A;  2Q8I A;  3BNH A;  3CE2 A;  4Q4U A;  4QIC A;  2FP2 A;  3MKH A;  3BNG A;  2JBR A;  2BU8 A;  2OT4 A;  4AKH A;  1LVC A;  4MPC A;  2RDZ A;  2AO2 A;  3OIB A;  4X28 A;  5K3I A;  1WS9 A;  2OEX A;  4P79 A;  1PK0 A;  4E00 A;  1RJ1 A;  3SCE A;  2EBA A;  3MMO A;  1R2J A;  2REH A;  1Y8P A;  4V25 A;  1X90 A;  4ZXV A;  4MPN A;  3TZ2 A;  1SIR A;  2RFQ A;  4KSA A;  2JBS A;  3P4T A;  3AFF A;  5B5V A;  2E0A A;  3OWA A;  2HJN A;  2OJQ A;  4H81 A;  4L3Y A;  4IRN A;  4FZ4 A;  4MP2 A;  2OEV A;  4Q5C A;  2CJ7 A;  4RM7 A;  3SF6 A;  4MPE A;  2J7A A;  4Q0T A;  4FF1 A;  2R03 A;  3GNC A;  4AI6 A;  2IX5 A;  3TOR A;  3B96 A;  3GQT A;  3DJL A;  2R0M A;  3D1I A;  5M4P A;  4W9U A;  3L1T A;  2CJ8 A;  5M4M A;  3BNF A;  4O5M A;  3LGQ A;  5K3J A;  2YYJ A;  2PNR A;  4IV6 A;  3CRK A;  3FO3 A;  2CJ5 A;  4N5F A;  2FP1 A;  3TZ0 A;  2BTZ A;  5B5W A;  5J6A A;  1RX0 A;  2A1T A;  3C46 A;  3MDE A;  2DVL A;  2ZDY A;  1JM6 A;  3Q0A A;  1XFZ A;  4KCF A;  3X29 A;  2FON A;  4XVX A;  4AKG A;  2BU2 A;  2ZDX A;  3D9F A;  4AKI A;  3D6B A;  5EZ3 A;  1T9G A;  2PG0 A;  1QDB A;  4L3Z A;  1XFY A;  5B6B A;  1GJV A;  1BUC A;  5K3H A;  1SIQ A;  1UKW A;  5BRM A;  2ZAF A;  2Q8G A;  3VAD A;  4JEK A;  1K90 A;  4E02 A;  1XFX A;  1EGD A;  3M9V A;  1PI1 A;  5GJV E;  1S26 A;  2EBF X;  4L38 A;  1Y8N A;  2JIF A;  2Q8F A;  3TTB A;  2IX6 A;  4M9A A;  5K3G A;  4G5E A;  4LQQ B;  3EOM A;  1R3B A;  2E81 A;  4Q17 A;  3D9D A;  2VR0 A;  3F29 A;  2C12 A;  2XS1 A;  3N0R A;  1IS2 A;  4J1V A;  3EON A;  1RJ4 A;  4KS9 A;  3CRL A;  1FS7 A;  4Q1O A;  1RP3 A;  3C2P A;  1XFW A;  4H7Q A;  2RF7 A;  3RKH A;  3X0Y A;  4V26 A;  4FF4 A;  3SXQ A;  2CX9 A;  4LQS B;  4HR3 A;  3R7K A;  2LFW A;  2YYG A;  1EGC A;  2EC5 A;  2ZO5 A;  2ZKJ A;  4FF2 A;  2YGW A;  4KSF A;  3TZ5 A;  1Y0V A;  2CJ4 A;  2R02 A;  4HKS A;  4Q5B A;  2BU7 A;  3SWO A;  1GU6 A;  2XQR B;  1K93 A;  3UBR A;  2QR4 A; 
#chains in the Genus database with same CATH homology
 3OWM A;  2YYM A;  3D9E A;  3PFD A;  2YYK A;  1W07 A;  3X0X A;  3BNJ A;  2YYL A;  2Z1Q A;  2C0U A;  1FS8 A;  1OAH A;  3II9 A;  2R0N A;  1EGE A;  2OR0 A;  2DDH A;  2JBT A;  3S7W A;  3MXL A;  3NF4 A;  1UDY A;  3UU9 A;  2E80 A;  4L1F A;  2VIG A;  3HWC A;  4X28 C;  3D9G A;  3MDD A;  2UXW A;  1IVH A;  4U83 A;  1JQI A;  4P13 A;  4ZYJ A;  4OO2 A;  2D29 A;  2WBI A;  1FS9 A;  4WJY A;  4L3X A;  3AFE A;  3LG1 A;  3MPJ A;  4NXL A;  1U8V A;  4KTO A;  2YYI A;  3MPI A;  3GM6 A;  3FCJ A;  4DOY A;  3BNH A;  4Q4U A;  2OT4 A;  3MKH A;  3BNG A;  2JBR A;  2RDZ A;  3OIB A;  4X28 A;  5K3I A;  1WS9 A;  3SCE A;  2EBA A;  3MMO A;  1R2J A;  2REH A;  4ZXV A;  1SIR A;  2RFQ A;  2JBS A;  3P4T A;  3AFF A;  3OWA A;  4L3Y A;  4IRN A;  4Q5C A;  4RM7 A;  3SF6 A;  4Q0T A;  2J7A A;  3GNC A;  2IX5 A;  3TOR A;  3B96 A;  3GQT A;  2R0M A;  3D1I A;  4W9U A;  3L1T A;  3BNF A;  4O5M A;  3LGQ A;  5K3J A;  2YYJ A;  4IV6 A;  3FO3 A;  4N5F A;  1RX0 A;  2A1T A;  3MDE A;  2DVL A;  4KCF A;  2FON A;  4XVX A;  3D9F A;  3D6B A;  1T9G A;  2PG0 A;  1QDB A;  4L3Z A;  1BUC A;  5K3H A;  1SIQ A;  1UKW A;  2ZAF A;  4JEK A;  1EGD A;  3M9V A;  4L38 A;  3TTB A;  2JIF A;  2IX6 A;  4M9A A;  5K3G A;  4G5E A;  3EOM A;  2E81 A;  4Q17 A;  3D9D A;  2VR0 A;  3F29 A;  2C12 A;  1IS2 A;  3EON A;  4Q1O A;  1FS7 A;  2RF7 A;  3RKH A;  3X0Y A;  3SXQ A;  2CX9 A;  4HR3 A;  3R7K A;  2YYG A;  1EGC A;  2ZO5 A;  4Q5B A;  3SWO A;  1GU6 A;  3UBR A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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