2DVLA

Crystal structure of project tt0160 from thermus thermophilus hb8
Total Genus 142
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
142
sequence length
370
structure length
370
Chain Sequence
LTQEQRLVLDAVRRVAREVLYPLAPEYDRKAEYPWPQLKALAELGLLGMTTPEEWGGVGLDSVTWALALEELAAADPSVAVIVSVTSGLPQYMLLRFGSEAQKRRYLVPLARGEWIGAFCLTEPQAGSDAKSLRAEARRVKGGFVLNGVKSWITSAGHAHLYVVMARTEKGISAFLVEKGTPGLSFGRPEEKMGLHAAHTAEVRLEEVFVPEENLLGEEGRGLAYALAGLDSGRVGVAAQAVGIARGAFEIAKAYAEEREQFGKKLKEHQAIAFKIADMHVKIAAARALVLEAARKKDRGERFTLEASAAKLFASAAAVEVTREAVQVLGGYGYHRDYRVERYYRDAKVTEIYEGTSEIQRLVIARELYR
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords Acyl-CoA dehydrogenase
publication title Crystal structure of TT0160 from Thermus thermophilus HB8
rcsb
source organism Thermus thermophilus
total genus 142
structure length 370
sequence length 370
chains with identical sequence B
ec nomenclature
pdb deposition date 2006-07-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00441 Acyl-CoA_dh_1 Acyl-CoA dehydrogenase, C-terminal domain
A PF02770 Acyl-CoA_dh_M Acyl-CoA dehydrogenase, middle domain
A PF02771 Acyl-CoA_dh_N Acyl-CoA dehydrogenase, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.540.10 Mainly Alpha Orthogonal Bundle Butyryl-Coa Dehydrogenase, subunit A; domain 1 Acyl-CoA dehydrogenase/oxidase, N-terminal domain 2dvlA01
1.20.140.10 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A; domain 3 Butyryl-CoA Dehydrogenase, subunit A, domain 3 2dvlA03
2.40.110.10 Mainly Beta Beta Barrel Butyryl-CoA Dehydrogenase, subunit A; domain 2 Butyryl-CoA Dehydrogenase, subunit A, domain 2 2dvlA02
3MXLA 3SXQA 4Q1OA 1W07A 2OR0A 4DOYA 3OIBA 1QDBA 2R0MA 5K3HA 2DDHA 3GM6A 4L3XA 3BNHA 3D9FA 3MPIA 1IS2A 4L3YA 1BUCA 3LG1A 2IX6A 4WJYA 4Q4UA 2DVLA 1R2JA 3PFDA 3TTBA 4RM7A 3OWMA 1EGEA 4X28C 2E81A 3BNJA 1SIRA 2FONA 1GU6A 4ZYJA 3MDDA 3NF4A 3BNGA 2C12A 2YYMA 3MKHA 1RX0A 2YYKA 2J7AA 2YYJA 2CX9A 2PG0A 2YYLA 3D1IA 4XVXA 4HR3A 4M9AA 3D9EA 1UKWA 2JBTA 5K3JA 3EONA 4ZXVA 2R0NA 3MPJA 4O5MA 4KCFA 1EGCA 2ZAFA 2RDZA 3D9GA 3EOMA 4Q5CA 3HWCA 3UBRA 1SIQA 3GNCA 3B96A 4Q0TA 2RF7A 2OT4A 3GQTA 1T9GA 3AFFA 4X28A 4Q17A 2RFQA 3D6BA 3BNFA 1IVHA 3D9DA 3RKHA 3F29A 2JBSA 2JIFA 2E80A 3S7WA 1FS8A 2VR0A 4G5EA 2EBAA 4JEKA 4IV6A 1FS9A 4N5FA 2D29A 3M9VA 3FCJA 2IX5A 3X0YA 2A1TA 1UDYA 3SF6A 3LGQA 1EGDA 5K3IA 3SWOA 3R7KA 2VIGA 2C0UA 2JBRA 2YYGA 2UXWA 4OO2A 3P4TA 4U83A 3II9A 4IRNA 4L38A 4Q5BA 3SCEA 5K3GA 3L1TA 3MDEA 1OAHA 4L3ZA 1JQIA 2REHA 4KTOA 1U8VA 1WS9A 4W9UA 3AFEA 3OWAA 2WBIA 4L1FA 2ZO5A 3FO3A 4P13A 3MMOA 3TORA 4NXLA 3X0XA 1FS7A 2YYIA 3UU9A 2Z1QA
chains in the Genus database with same CATH superfamily
3MXLA 3SXQA 3Q24A 4Q1OA 1W07A 5M4PA 2OR0A 2BU6A 2PNRA 1LVCA 1RJ1A 4DOYA 3OIBA 1QDBA 4AKGA 2CJ5A 2XS8A 3KMLA 2R0MA 5K3HA 4FZ4A 2DDHA 4MP2A 4E00A 2YGWA 3CE2A 3GM6A 3BNHA 4L3XA 3D9FA 3MPIA 1IS2A 5EZ3A 3C2PA 4FF2A 4L3YA 1BUCA 2FP1A 4JIZA 3LG1A 2FP2A 2IX6A 1GKZA 4Q4UA 4WJYA 3Q0AA 2BU2A 4QICA 2DVLA 5B6BA 3Q23A 1R2JA 3PFDA 1XFUA 3TTBA 1Y8PA 4KS9A 4RM7A 2OJQA 1Y0VA 2EBHX 3OWMA 4FF4A 1SC5A 1EGEA 4X28C 2E81A 3BNJA 3D2RA 2BU8A 4H7QA 1SIRA 2Q8IA 2FONA 1GU6A 5BRMA 2EC5A 4E01A 3U33A 4ZYJA 1PI1A 3MDDA 1XG2B 4HKSA 3NF4A 3BNGA 2C12A 3DJLA 4KSAA 2YYMA 4FF1A 2BTZA 2XQRB 3MKHA 2CJ4A 2CJ7A 1RX0A 2QR4A 2J7AA 2YYKA 2CX9A 2PG0A 2CJ8A 2YYJA 2YYLA 2E0AA 3D1IA 4V25A 4XVXA 4H81A 5GJWE 4DZYA 1SK6A 4HR3A 4J1VA 4AI6A 4M9AA 3D9EA 1UKWA 4HKRA 3VADA 2JBTA 4KSFA 5K3JA 1GJVA 4AKHA 3EONA 4ZXVA 2ZKJA 2AZEA 4V26A 3VKHA 5M4MA 2HJNA 3CRLA 2R0NA 3MPJA 2AO2A 4O5MA 4FF3A 5B5VA 4KCFA 1EGCA 4MPEA 2ZAFA 2RDZA 3D9GA 3EOMA 4Q5CA 3HWCA 3UBRA 1SIQA 3GNCA 5J6AA 2VF1A 3B96A 4Q0TA 1XFYA 2RF7A 2OT4A 3GQTA 2R03A 1T9GA 3AFFA 1XFZA 4X28A 1X91A 4LQQB 1Y8OA 2RFQA 4Q17A 3X29A 3D6BA 1RJ4A 3BNFA 3TZ4A 2BU7A 2Q8FA 1X90A 3C3LA 1IVHA 3D9DA 3TZ2A 3RKHA 1XFVA 2JBSA 2JIFA 2CJ6A 3F29A 1R3BA 2E80A 3TZ0A 5B5WA 3S7WA 1FS8A 2VR0A 3C46A 4AKIA 4G5EA 2OEXA 2EBAA 4JEKA 4P79A 2Q8HA 3VKGA 4IV6A 4LQSB 1FS9A 5BRKA 4N5FA 1RP3A 2D29A 4G97A 5J71A 1GKXA 3M9VA 3FCJA 2IX5A 3CRKA 1PK0A 3X0YA 2A1TA 1UDYA 3SF6A 2ZDXA 1EGDA 5K3IA 2ZDYA 3SWOA 2BU5A 3LGQA 3N0RA 4MPCA 3R7KA 2R05A 2VIGA 2R02A 2XS1A 2C0UA 2JBRA 2YYGA 2UXWA 4OO2A 3P4TA 4MP7A 4U83A 3II9A 4IRNA 1XFXA 2F6LA 4L38A 1XFWA 2EBFX 1X8ZA 4Q5BA 5K3GA 3SCEA 3L1TA 4JIOA 3MDEA 1K8TA 2LFWA 2OEVA 1OAHA 2PO4A 4L3ZA 1JQIA 2REHA 4E02A 1JM6A 4KTOA 1S26A 4F0XA 1U8VA 1WS9A 2GBBA 2Q8GA 4W9UA 3AFEA 3OWAA 2WBIA 1Y8NA 4L1FA 2ZO5A 1K93A 4P13A 3FO3A 3MMOA 4H85A 4MPNA 3TORA 3TZ5A 5M4KA 4NXLA 3X0XA 1FS7A 2YYIA 5GJVE 1K90A 3UU9A 5M4NA 2Z1QA 3Q22A
chains in the Genus database with same CATH topology
3MXLA 3SXQA 4Q1OA 1W07A 2OR0A 4DOYA 3OIBA 1QDBA 2R0MA 5K3HA 2DDHA 3GM6A 4L3XA 3BNHA 3D9FA 3MPIA 1IS2A 4L3YA 1BUCA 3LG1A 2IX6A 4WJYA 4Q4UA 2DVLA 1R2JA 3PFDA 3TTBA 4RM7A 3OWMA 1EGEA 4X28C 2E81A 3BNJA 1SIRA 2FONA 1GU6A 4ZYJA 3MDDA 3NF4A 3BNGA 2C12A 2YYMA 3MKHA 1RX0A 2YYKA 2J7AA 2YYJA 2CX9A 2PG0A 2YYLA 3D1IA 4XVXA 4HR3A 4M9AA 3D9EA 1UKWA 2JBTA 5K3JA 3EONA 4ZXVA 2R0NA 3MPJA 4O5MA 4KCFA 1EGCA 2ZAFA 2RDZA 3D9GA 3EOMA 4Q5CA 3HWCA 3UBRA 1SIQA 3GNCA 3B96A 4Q0TA 2RF7A 2OT4A 3GQTA 1T9GA 3AFFA 4X28A 4Q17A 2RFQA 3D6BA 3BNFA 1IVHA 3D9DA 3RKHA 3F29A 2JBSA 2JIFA 2E80A 3S7WA 1FS8A 2VR0A 4G5EA 2EBAA 4JEKA 4IV6A 1FS9A 4N5FA 2D29A 3M9VA 3FCJA 2IX5A 3X0YA 2A1TA 1UDYA 3SF6A 3LGQA 1EGDA 5K3IA 3SWOA 3R7KA 2VIGA 2C0UA 2JBRA 2YYGA 2UXWA 4OO2A 3P4TA 4U83A 3II9A 4IRNA 4L38A 4Q5BA 3SCEA 5K3GA 3L1TA 3MDEA 1OAHA 4L3ZA 1JQIA 2REHA 4KTOA 1U8VA 1WS9A 4W9UA 3AFEA 3OWAA 2WBIA 4L1FA 2ZO5A 3FO3A 4P13A 3MMOA 3TORA 4NXLA 3X0XA 1FS7A 2YYIA 3UU9A 2Z1QA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3MXL A;  3SXQ A;  4Q1O A;  1W07 A;  2OR0 A;  4DOY A;  3OIB A;  1QDB A;  2R0M A;  5K3H A;  2DDH A;  3GM6 A;  4L3X A;  3BNH A;  3D9F A;  3MPI A;  1IS2 A;  4L3Y A;  1BUC A;  3LG1 A;  2IX6 A;  4WJY A;  4Q4U A;  2DVL A;  1R2J A;  3PFD A;  3TTB A;  4RM7 A;  3OWM A;  1EGE A;  4X28 C;  2E81 A;  3BNJ A;  1SIR A;  2FON A;  1GU6 A;  4ZYJ A;  3MDD A;  3NF4 A;  3BNG A;  2C12 A;  2YYM A;  3MKH A;  1RX0 A;  2YYK A;  2J7A A;  2YYJ A;  2CX9 A;  2PG0 A;  2YYL A;  3D1I A;  4XVX A;  4HR3 A;  4M9A A;  3D9E A;  1UKW A;  2JBT A;  5K3J A;  3EON A;  4ZXV A;  2R0N A;  3MPJ A;  4O5M A;  4KCF A;  1EGC A;  2ZAF A;  2RDZ A;  3D9G A;  3EOM A;  4Q5C A;  3HWC A;  3UBR A;  1SIQ A;  3GNC A;  3B96 A;  4Q0T A;  2RF7 A;  2OT4 A;  3GQT A;  1T9G A;  3AFF A;  4X28 A;  4Q17 A;  2RFQ A;  3D6B A;  3BNF A;  1IVH A;  3D9D A;  3RKH A;  3F29 A;  2JBS A;  2JIF A;  2E80 A;  3S7W A;  1FS8 A;  2VR0 A;  4G5E A;  2EBA A;  4JEK A;  4IV6 A;  1FS9 A;  4N5F A;  2D29 A;  3M9V A;  3FCJ A;  2IX5 A;  3X0Y A;  2A1T A;  1UDY A;  3SF6 A;  3LGQ A;  1EGD A;  5K3I A;  3SWO A;  3R7K A;  2VIG A;  2C0U A;  2JBR A;  2YYG A;  2UXW A;  4OO2 A;  3P4T A;  4U83 A;  3II9 A;  4IRN A;  4L38 A;  4Q5B A;  3SCE A;  5K3G A;  3L1T A;  3MDE A;  1OAH A;  4L3Z A;  1JQI A;  2REH A;  4KTO A;  1U8V A;  1WS9 A;  4W9U A;  3AFE A;  3OWA A;  2WBI A;  4L1F A;  2ZO5 A;  3FO3 A;  4P13 A;  3MMO A;  3TOR A;  4NXL A;  3X0X A;  1FS7 A;  2YYI A;  3UU9 A;  2Z1Q A; 
#chains in the Genus database with same CATH topology
 3MXL A;  3SXQ A;  3Q24 A;  4Q1O A;  1W07 A;  5M4P A;  2OR0 A;  2BU6 A;  2PNR A;  1LVC A;  1RJ1 A;  4DOY A;  3OIB A;  1QDB A;  4AKG A;  2CJ5 A;  2XS8 A;  3KML A;  2R0M A;  5K3H A;  4FZ4 A;  2DDH A;  4MP2 A;  4E00 A;  2YGW A;  3CE2 A;  3GM6 A;  3BNH A;  4L3X A;  3D9F A;  3MPI A;  1IS2 A;  5EZ3 A;  3C2P A;  4FF2 A;  4L3Y A;  1BUC A;  2FP1 A;  4JIZ A;  3LG1 A;  2FP2 A;  2IX6 A;  1GKZ A;  4Q4U A;  4WJY A;  3Q0A A;  2BU2 A;  4QIC A;  2DVL A;  5B6B A;  3Q23 A;  1R2J A;  3PFD A;  1XFU A;  3TTB A;  1Y8P A;  4KS9 A;  4RM7 A;  2OJQ A;  1Y0V A;  2EBH X;  3OWM A;  4FF4 A;  1SC5 A;  1EGE A;  4X28 C;  2E81 A;  3BNJ A;  3D2R A;  2BU8 A;  4H7Q A;  1SIR A;  2Q8I A;  2FON A;  1GU6 A;  5BRM A;  2EC5 A;  4E01 A;  3U33 A;  4ZYJ A;  1PI1 A;  3MDD A;  1XG2 B;  4HKS A;  3NF4 A;  3BNG A;  2C12 A;  3DJL A;  4KSA A;  2YYM A;  4FF1 A;  2BTZ A;  2XQR B;  3MKH A;  2CJ4 A;  2CJ7 A;  1RX0 A;  2QR4 A;  2J7A A;  2YYK A;  2CX9 A;  2PG0 A;  2CJ8 A;  2YYJ A;  2YYL A;  2E0A A;  3D1I A;  4V25 A;  4XVX A;  4H81 A;  5GJW E;  4DZY A;  1SK6 A;  4HR3 A;  4J1V A;  4AI6 A;  4M9A A;  3D9E A;  1UKW A;  4HKR A;  3VAD A;  2JBT A;  4KSF A;  5K3J A;  1GJV A;  4AKH A;  3EON A;  4ZXV A;  2ZKJ A;  2AZE A;  4V26 A;  3VKH A;  5M4M A;  2HJN A;  3CRL A;  2R0N A;  3MPJ A;  2AO2 A;  4O5M A;  4FF3 A;  5B5V A;  4KCF A;  1EGC A;  4MPE A;  2ZAF A;  2RDZ A;  3D9G A;  3EOM A;  4Q5C A;  3HWC A;  3UBR A;  1SIQ A;  3GNC A;  5J6A A;  2VF1 A;  3B96 A;  4Q0T A;  1XFY A;  2RF7 A;  2OT4 A;  3GQT A;  2R03 A;  1T9G A;  3AFF A;  1XFZ A;  4X28 A;  1X91 A;  4LQQ B;  1Y8O A;  2RFQ A;  4Q17 A;  3X29 A;  3D6B A;  1RJ4 A;  3BNF A;  3TZ4 A;  2BU7 A;  2Q8F A;  1X90 A;  3C3L A;  1IVH A;  3D9D A;  3TZ2 A;  3RKH A;  1XFV A;  2JBS A;  2JIF A;  2CJ6 A;  3F29 A;  1R3B A;  2E80 A;  3TZ0 A;  5B5W A;  3S7W A;  1FS8 A;  2VR0 A;  3C46 A;  4AKI A;  4G5E A;  2OEX A;  2EBA A;  4JEK A;  4P79 A;  2Q8H A;  3VKG A;  4IV6 A;  4LQS B;  1FS9 A;  5BRK A;  4N5F A;  1RP3 A;  2D29 A;  4G97 A;  5J71 A;  1GKX A;  3M9V A;  3FCJ A;  2IX5 A;  3CRK A;  1PK0 A;  3X0Y A;  2A1T A;  1UDY A;  3SF6 A;  2ZDX A;  1EGD A;  5K3I A;  2ZDY A;  3SWO A;  2BU5 A;  3LGQ A;  3N0R A;  4MPC A;  3R7K A;  2R05 A;  2VIG A;  2R02 A;  2XS1 A;  2C0U A;  2JBR A;  2YYG A;  2UXW A;  4OO2 A;  3P4T A;  4MP7 A;  4U83 A;  3II9 A;  4IRN A;  1XFX A;  2F6L A;  4L38 A;  1XFW A;  2EBF X;  1X8Z A;  4Q5B A;  5K3G A;  3SCE A;  3L1T A;  4JIO A;  3MDE A;  1K8T A;  2LFW A;  2OEV A;  1OAH A;  2PO4 A;  4L3Z A;  1JQI A;  2REH A;  4E02 A;  1JM6 A;  4KTO A;  1S26 A;  4F0X A;  1U8V A;  1WS9 A;  2GBB A;  2Q8G A;  4W9U A;  3AFE A;  3OWA A;  2WBI A;  1Y8N A;  4L1F A;  2ZO5 A;  1K93 A;  4P13 A;  3FO3 A;  3MMO A;  4H85 A;  4MPN A;  3TOR A;  3TZ5 A;  5M4K A;  4NXL A;  3X0X A;  1FS7 A;  2YYI A;  5GJV E;  1K90 A;  3UU9 A;  5M4N A;  2Z1Q A;  3Q22 A; 
#chains in the Genus database with same CATH homology
 3MXL A;  3SXQ A;  4Q1O A;  1W07 A;  2OR0 A;  4DOY A;  3OIB A;  1QDB A;  2R0M A;  5K3H A;  2DDH A;  3GM6 A;  4L3X A;  3BNH A;  3D9F A;  3MPI A;  1IS2 A;  4L3Y A;  1BUC A;  3LG1 A;  2IX6 A;  4WJY A;  4Q4U A;  2DVL A;  1R2J A;  3PFD A;  3TTB A;  4RM7 A;  3OWM A;  1EGE A;  4X28 C;  2E81 A;  3BNJ A;  1SIR A;  2FON A;  1GU6 A;  4ZYJ A;  3MDD A;  3NF4 A;  3BNG A;  2C12 A;  2YYM A;  3MKH A;  1RX0 A;  2YYK A;  2J7A A;  2YYJ A;  2CX9 A;  2PG0 A;  2YYL A;  3D1I A;  4XVX A;  4HR3 A;  4M9A A;  3D9E A;  1UKW A;  2JBT A;  5K3J A;  3EON A;  4ZXV A;  2R0N A;  3MPJ A;  4O5M A;  4KCF A;  1EGC A;  2ZAF A;  2RDZ A;  3D9G A;  3EOM A;  4Q5C A;  3HWC A;  3UBR A;  1SIQ A;  3GNC A;  3B96 A;  4Q0T A;  2RF7 A;  2OT4 A;  3GQT A;  1T9G A;  3AFF A;  4X28 A;  4Q17 A;  2RFQ A;  3D6B A;  3BNF A;  1IVH A;  3D9D A;  3RKH A;  3F29 A;  2JBS A;  2JIF A;  2E80 A;  3S7W A;  1FS8 A;  2VR0 A;  4G5E A;  2EBA A;  4JEK A;  4IV6 A;  1FS9 A;  4N5F A;  2D29 A;  3M9V A;  3FCJ A;  2IX5 A;  3X0Y A;  2A1T A;  1UDY A;  3SF6 A;  3LGQ A;  1EGD A;  5K3I A;  3SWO A;  3R7K A;  2VIG A;  2C0U A;  2JBR A;  2YYG A;  2UXW A;  4OO2 A;  3P4T A;  4U83 A;  3II9 A;  4IRN A;  4L38 A;  4Q5B A;  3SCE A;  5K3G A;  3L1T A;  3MDE A;  1OAH A;  4L3Z A;  1JQI A;  2REH A;  4KTO A;  1U8V A;  1WS9 A;  4W9U A;  3AFE A;  3OWA A;  2WBI A;  4L1F A;  2ZO5 A;  3FO3 A;  4P13 A;  3MMO A;  3TOR A;  4NXL A;  3X0X A;  1FS7 A;  2YYI A;  3UU9 A;  2Z1Q A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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