2DVLA

Crystal structure of project tt0160 from thermus thermophilus hb8
Total Genus 142
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
142
sequence length
370
structure length
370
Chain Sequence
b'LTQEQRLVLDAVRRVAREVLYPLAPEYDRKAEYPWPQLKALAELGLLGMTTPEEWGGVGLDSVTWALALEELAAADPSVAVIVSVTSGLPQYMLLRFGSEAQKRRYLVPLARGEWIGAFCLTEPQAGSDAKSLRAEARRVKGGFVLNGVKSWITSAGHAHLYVVMARTEKGISAFLVEKGTPGLSFGRPEEKMGLHAAHTAEVRLEEVFVPEENLLGEEGRGLAYALAGLDSGRVGVAAQAVGIARGAFEIAKAYAEEREQFGKKLKEHQAIAFKIADMHVKIAAARALVLEAARKKDRGERFTLEASAAKLFASAAAVEVTREAVQVLGGYGYHRDYRVERYYRDAKVTEIYEGTSEIQRLVIARELYR'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Acyl-CoA dehydrogenase
publication title Crystal structure of TT0160 from Thermus thermophilus HB8
rcsb
source organism Thermus thermophilus
molecule tags Oxidoreductase
total genus 142
structure length 370
sequence length 370
chains with identical sequence B
ec nomenclature
pdb deposition date 2006-07-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00441 Acyl-CoA_dh_1 Acyl-CoA dehydrogenase, C-terminal domain
A PF02770 Acyl-CoA_dh_M Acyl-CoA dehydrogenase, middle domain
A PF02771 Acyl-CoA_dh_N Acyl-CoA dehydrogenase, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.540.10 Mainly Alpha Orthogonal Bundle Butyryl-Coa Dehydrogenase, subunit A; domain 1 Acyl-CoA dehydrogenase/oxidase, N-terminal domain 2dvlA01
1.20.140.10 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A; domain 3 Butyryl-CoA Dehydrogenase, subunit A, domain 3 2dvlA03
2.40.110.10 Mainly Beta Beta Barrel Butyryl-CoA Dehydrogenase, subunit A; domain 2 Butyryl-CoA Dehydrogenase, subunit A, domain 2 2dvlA02
3X0XA 3BNHA 2CX9A 4JEKA 3M9VA 3D9GA 2Z1QA 4N5FA 2PG0A 3X0YA 2YYLA 3MXLA 3SXQA 2ZAFA 4L1FA 3BNJA 3GM6A 3L1TA 3D6BA 4L3ZA 4Q1OA 3OWAA 2C0UA 1SIRA 3R7KA 1EGDA 3D9EA 5K3IA 2DDHA 4Q0TA 1UDYA 1EGCA 3MPJA 3OIBA 4NXLA 4IV6A 3OWMA 3II9A 4ZXVA 4ZYJA 1R2JA 2R0NA 3FO3A 1U8VA 1SIQA 3MDDA 2YYKA 3BNFA 3UU9A 3P4TA 2EBAA 2DVLA 4Q17A 2JBSA 4O5MA 2J7AA 1T9GA 1GU6A 2YYJA 2JBRA 2YYGA 2FONA 4U83A 3BNGA 3EONA 3AFEA 2OR0A 3GNCA 1WS9A 2UXWA 2OT4A 2E80A 3SF6A 3MPIA 3B96A 4HR3A 1FS7A 3SCEA 3F29A 4M9AA 2IX5A 4P13A 2VR0A 2C12A 3TORA 3RKHA 4IRNA 5K3HA 3MKHA 4WJYA 2JBTA 3LGQA 4W9UA 4OO2A 4XVXA 3SWOA 2RFQA 4KTOA 4L3XA 2YYMA 1BUCA 1FS8A 1OAHA 3AFFA 3LG1A 3MDEA 3D1IA 1JQIA 2RF7A 3UBRA 1RX0A 4Q5BA 2VIGA 2R0MA 2JIFA 1IS2A 3HWCA 3MMOA 3FCJA 1EGEA 3D9DA 2E81A 4L3YA 3S7WA 2A1TA 4G5EA 2WBIA 2REHA 4X28A 1FS9A 4X28C 2IX6A 2ZO5A 3GQTA 3NF4A 4L38A 4KCFA 5K3GA 2YYIA 3TTBA 3PFDA 4RM7A 3EOMA 4Q5CA 2RDZA 1IVHA 1W07A 1UKWA 5K3JA 4Q4UA 2D29A 1QDBA 4DOYA 3D9FA
chains in the Genus database with same CATH superfamily
3X0XA 3BNHA 2CX9A 4JEKA 2BTZA 3M9VA 3D9GA 1Y8PA 2CJ6A 2Z1QA 4N5FA 2VF1A 2PG0A 2PO4A 4HKSA 4H81A 3X0YA 2YYLA 3MXLA 3SXQA 1Y8OA 2ZAFA 1XFWA 4L1FA 3BNJA 3VADA 3CRKA 3GM6A 3L1TA 4FF1A 3D6BA 4L3ZA 4Q1OA 4QICA 1K90A 3OWAA 2CJ7A 2C0UA 1SIRA 1SC5A 3R7KA 1EGDA 3D9EA 5K3IA 2XS1A 3TZ4A 2DDHA 2BU7A 1UDYA 4Q0TA 3Q22A 4H85A 3C3LA 1XFZA 1EGCA 3MPJA 2OJQA 3OIBA 4KSAA 4AKHA 4NXLA 3DJLA 4IV6A 1S26A 3D2RA 5EZ3A 3OWMA 3II9A 4ZXVA 4ZYJA 2E0AA 1Y8NA 1R2JA 2R0NA 4JIOA 2AO2A 3FO3A 1U8VA 3N0RA 1SIQA 3MDDA 2Q8FA 4E02A 5M4KA 2YYKA 1X91A 4FZ4A 3BNFA 5B5WA 3Q0AA 3UU9A 4E01A 4AKIA 3P4TA 2EBHX 2AZEA 2EBAA 2DVLA 2BU6A 4Q17A 2EBFX 2JBSA 4MPEA 4O5MA 2J7AA 1PK0A 2LFWA 1XG2B 2R02A 5J71A 1T9GA 1GU6A 2GBBA 2YYJA 2JBRA 1RJ4A 2YYGA 4MPNA 2BU5A 2FONA 4U83A 3BNGA 3EONA 2FP1A 2OEXA 3AFEA 4MPCA 5BRKA 1JM6A 4P79A 2OR0A 3GNCA 3CRLA 1WS9A 2UXWA 2OT4A 2E80A 1XFYA 1XFVA 3SF6A 3MPIA 3B96A 4HR3A 1FS7A 2BU8A 2CJ5A 2F6LA 2R03A 4M9AA 3F29A 2IX5A 3SCEA 4P13A 1GJVA 2VR0A 2C12A 4J1VA 3TORA 3U33A 3RKHA 1SK6A 4IRNA 5BRMA 2PNRA 3C46A 4F0XA 5K3HA 4G97A 4KS9A 2OEVA 4MP7A 5GJWE 1PI1A 4FF3A 3MKHA 1X90A 4WJYA 3VKHA 2JBTA 3TZ0A 3CE2A 3LGQA 3X29A 4W9UA 2XQRB 4OO2A 2Q8GA 4XVXA 3SWOA 2RFQA 4KTOA 2ZDXA 3Q24A 3Q23A 4HKRA 2Q8HA 4L3XA 2YYMA 1BUCA 1RJ1A 1FS8A 2YGWA 1OAHA 3AFFA 2R05A 3LG1A 2QR4A 3VKGA 3MDEA 2Q8IA 3D1IA 1JQIA 4FF4A 2BU2A 2RF7A 2EC5A 3UBRA 1K8TA 5GJVE 1RX0A 2ZKJA 4LQQB 4Q5BA 4AKGA 4H7QA 2VIGA 2R0MA 4AI6A 2JIFA 1IS2A 3HWCA 3MMOA 5M4MA 3FCJA 1XFXA 5M4PA 3KMLA 1EGEA 1XFUA 3D9DA 2E81A 4V26A 4L3YA 3S7WA 2A1TA 1Y0VA 4G5EA 2WBIA 1GKZA 5B5VA 2REHA 1RP3A 4V25A 4E00A 5J6AA 4X28A 1FS9A 4X28C 2IX6A 2ZO5A 3TZ5A 3GQTA 3NF4A 4LQSB 3TZ2A 3C2PA 1X8ZA 2HJNA 4KCFA 4L38A 5B6BA 4FF2A 5K3GA 2XS8A 1R3BA 2YYIA 1GKXA 3PFDA 4RM7A 3EOMA 2ZDYA 4MP2A 2RDZA 4Q5CA 3TTBA 1IVHA 1W07A 1UKWA 4KSFA 5K3JA 2FP2A 4Q4UA 4DZYA 1K93A 2D29A 5M4NA 1QDBA 4DOYA 1LVCA 2CJ4A 2CJ8A 4JIZA 3D9FA
chains in the Genus database with same CATH topology
3X0XA 3BNHA 2CX9A 4JEKA 3M9VA 3D9GA 2Z1QA 4N5FA 2PG0A 3X0YA 2YYLA 3MXLA 3SXQA 2ZAFA 4L1FA 3BNJA 3GM6A 3L1TA 3D6BA 4L3ZA 4Q1OA 3OWAA 2C0UA 1SIRA 3R7KA 1EGDA 3D9EA 5K3IA 2DDHA 4Q0TA 1UDYA 1EGCA 3MPJA 3OIBA 4NXLA 4IV6A 3OWMA 3II9A 4ZXVA 4ZYJA 1R2JA 2R0NA 3FO3A 1U8VA 1SIQA 3MDDA 2YYKA 3BNFA 3UU9A 3P4TA 2EBAA 2DVLA 4Q17A 2JBSA 4O5MA 2J7AA 1T9GA 1GU6A 2YYJA 2JBRA 2YYGA 2FONA 4U83A 3BNGA 3EONA 3AFEA 2OR0A 3GNCA 1WS9A 2UXWA 2OT4A 2E80A 3SF6A 3MPIA 3B96A 4HR3A 1FS7A 3SCEA 3F29A 4M9AA 2IX5A 4P13A 2VR0A 2C12A 3TORA 3RKHA 4IRNA 5K3HA 3MKHA 4WJYA 2JBTA 3LGQA 4W9UA 4OO2A 4XVXA 3SWOA 2RFQA 4KTOA 4L3XA 2YYMA 1BUCA 1FS8A 1OAHA 3AFFA 3LG1A 3MDEA 3D1IA 1JQIA 2RF7A 3UBRA 1RX0A 4Q5BA 2VIGA 2R0MA 2JIFA 1IS2A 3HWCA 3MMOA 3FCJA 1EGEA 3D9DA 2E81A 4L3YA 3S7WA 2A1TA 4G5EA 2WBIA 2REHA 4X28A 1FS9A 4X28C 2IX6A 2ZO5A 3GQTA 3NF4A 4L38A 4KCFA 5K3GA 2YYIA 3TTBA 3PFDA 4RM7A 3EOMA 4Q5CA 2RDZA 1IVHA 1W07A 1UKWA 5K3JA 4Q4UA 2D29A 1QDBA 4DOYA 3D9FA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3X0X A;  3BNH A;  2CX9 A;  4JEK A;  3M9V A;  3D9G A;  2Z1Q A;  4N5F A;  2PG0 A;  3X0Y A;  2YYL A;  3MXL A;  3SXQ A;  2ZAF A;  4L1F A;  3BNJ A;  3GM6 A;  3L1T A;  3D6B A;  4L3Z A;  4Q1O A;  3OWA A;  2C0U A;  1SIR A;  3R7K A;  1EGD A;  3D9E A;  5K3I A;  2DDH A;  4Q0T A;  1UDY A;  1EGC A;  3MPJ A;  3OIB A;  4NXL A;  4IV6 A;  3OWM A;  3II9 A;  4ZXV A;  4ZYJ A;  1R2J A;  2R0N A;  3FO3 A;  1U8V A;  1SIQ A;  3MDD A;  2YYK A;  3BNF A;  3UU9 A;  3P4T A;  2EBA A;  2DVL A;  4Q17 A;  2JBS A;  4O5M A;  2J7A A;  1T9G A;  1GU6 A;  2YYJ A;  2JBR A;  2YYG A;  2FON A;  4U83 A;  3BNG A;  3EON A;  3AFE A;  2OR0 A;  3GNC A;  1WS9 A;  2UXW A;  2OT4 A;  2E80 A;  3SF6 A;  3MPI A;  3B96 A;  4HR3 A;  1FS7 A;  3SCE A;  3F29 A;  4M9A A;  2IX5 A;  4P13 A;  2VR0 A;  2C12 A;  3TOR A;  3RKH A;  4IRN A;  5K3H A;  3MKH A;  4WJY A;  2JBT A;  3LGQ A;  4W9U A;  4OO2 A;  4XVX A;  3SWO A;  2RFQ A;  4KTO A;  4L3X A;  2YYM A;  1BUC A;  1FS8 A;  1OAH A;  3AFF A;  3LG1 A;  3MDE A;  3D1I A;  1JQI A;  2RF7 A;  3UBR A;  1RX0 A;  4Q5B A;  2VIG A;  2R0M A;  2JIF A;  1IS2 A;  3HWC A;  3MMO A;  3FCJ A;  1EGE A;  3D9D A;  2E81 A;  4L3Y A;  3S7W A;  2A1T A;  4G5E A;  2WBI A;  2REH A;  4X28 A;  1FS9 A;  4X28 C;  2IX6 A;  2ZO5 A;  3GQT A;  3NF4 A;  4L38 A;  4KCF A;  5K3G A;  2YYI A;  3TTB A;  3PFD A;  4RM7 A;  3EOM A;  4Q5C A;  2RDZ A;  1IVH A;  1W07 A;  1UKW A;  5K3J A;  4Q4U A;  2D29 A;  1QDB A;  4DOY A;  3D9F A; 
#chains in the Genus database with same CATH topology
 3X0X A;  3BNH A;  2CX9 A;  4JEK A;  2BTZ A;  3M9V A;  3D9G A;  1Y8P A;  2CJ6 A;  2Z1Q A;  4N5F A;  2VF1 A;  2PG0 A;  2PO4 A;  4HKS A;  4H81 A;  3X0Y A;  2YYL A;  3MXL A;  3SXQ A;  1Y8O A;  2ZAF A;  1XFW A;  4L1F A;  3BNJ A;  3VAD A;  3CRK A;  3GM6 A;  3L1T A;  4FF1 A;  3D6B A;  4L3Z A;  4Q1O A;  4QIC A;  1K90 A;  3OWA A;  2CJ7 A;  2C0U A;  1SIR A;  1SC5 A;  3R7K A;  1EGD A;  3D9E A;  5K3I A;  2XS1 A;  3TZ4 A;  2DDH A;  2BU7 A;  1UDY A;  4Q0T A;  3Q22 A;  4H85 A;  3C3L A;  1XFZ A;  1EGC A;  3MPJ A;  2OJQ A;  3OIB A;  4KSA A;  4AKH A;  4NXL A;  3DJL A;  4IV6 A;  1S26 A;  3D2R A;  5EZ3 A;  3OWM A;  3II9 A;  4ZXV A;  4ZYJ A;  2E0A A;  1Y8N A;  1R2J A;  2R0N A;  4JIO A;  2AO2 A;  3FO3 A;  1U8V A;  3N0R A;  1SIQ A;  3MDD A;  2Q8F A;  4E02 A;  5M4K A;  2YYK A;  1X91 A;  4FZ4 A;  3BNF A;  5B5W A;  3Q0A A;  3UU9 A;  4E01 A;  4AKI A;  3P4T A;  2EBH X;  2AZE A;  2EBA A;  2DVL A;  2BU6 A;  4Q17 A;  2EBF X;  2JBS A;  4MPE A;  4O5M A;  2J7A A;  1PK0 A;  2LFW A;  1XG2 B;  2R02 A;  5J71 A;  1T9G A;  1GU6 A;  2GBB A;  2YYJ A;  2JBR A;  1RJ4 A;  2YYG A;  4MPN A;  2BU5 A;  2FON A;  4U83 A;  3BNG A;  3EON A;  2FP1 A;  2OEX A;  3AFE A;  4MPC A;  5BRK A;  1JM6 A;  4P79 A;  2OR0 A;  3GNC A;  3CRL A;  1WS9 A;  2UXW A;  2OT4 A;  2E80 A;  1XFY A;  1XFV A;  3SF6 A;  3MPI A;  3B96 A;  4HR3 A;  1FS7 A;  2BU8 A;  2CJ5 A;  2F6L A;  2R03 A;  4M9A A;  3F29 A;  2IX5 A;  3SCE A;  4P13 A;  1GJV A;  2VR0 A;  2C12 A;  4J1V A;  3TOR A;  3U33 A;  3RKH A;  1SK6 A;  4IRN A;  5BRM A;  2PNR A;  3C46 A;  4F0X A;  5K3H A;  4G97 A;  4KS9 A;  2OEV A;  4MP7 A;  5GJW E;  1PI1 A;  4FF3 A;  3MKH A;  1X90 A;  4WJY A;  3VKH A;  2JBT A;  3TZ0 A;  3CE2 A;  3LGQ A;  3X29 A;  4W9U A;  2XQR B;  4OO2 A;  2Q8G A;  4XVX A;  3SWO A;  2RFQ A;  4KTO A;  2ZDX A;  3Q24 A;  3Q23 A;  4HKR A;  2Q8H A;  4L3X A;  2YYM A;  1BUC A;  1RJ1 A;  1FS8 A;  2YGW A;  1OAH A;  3AFF A;  2R05 A;  3LG1 A;  2QR4 A;  3VKG A;  3MDE A;  2Q8I A;  3D1I A;  1JQI A;  4FF4 A;  2BU2 A;  2RF7 A;  2EC5 A;  3UBR A;  1K8T A;  5GJV E;  1RX0 A;  2ZKJ A;  4LQQ B;  4Q5B A;  4AKG A;  4H7Q A;  2VIG A;  2R0M A;  4AI6 A;  2JIF A;  1IS2 A;  3HWC A;  3MMO A;  5M4M A;  3FCJ A;  1XFX A;  5M4P A;  3KML A;  1EGE A;  1XFU A;  3D9D A;  2E81 A;  4V26 A;  4L3Y A;  3S7W A;  2A1T A;  1Y0V A;  4G5E A;  2WBI A;  1GKZ A;  5B5V A;  2REH A;  1RP3 A;  4V25 A;  4E00 A;  5J6A A;  4X28 A;  1FS9 A;  4X28 C;  2IX6 A;  2ZO5 A;  3TZ5 A;  3GQT A;  3NF4 A;  4LQS B;  3TZ2 A;  3C2P A;  1X8Z A;  2HJN A;  4KCF A;  4L38 A;  5B6B A;  4FF2 A;  5K3G A;  2XS8 A;  1R3B A;  2YYI A;  1GKX A;  3PFD A;  4RM7 A;  3EOM A;  2ZDY A;  4MP2 A;  2RDZ A;  4Q5C A;  3TTB A;  1IVH A;  1W07 A;  1UKW A;  4KSF A;  5K3J A;  2FP2 A;  4Q4U A;  4DZY A;  1K93 A;  2D29 A;  5M4N A;  1QDB A;  4DOY A;  1LVC A;  2CJ4 A;  2CJ8 A;  4JIZ A;  3D9F A; 
#chains in the Genus database with same CATH homology
 3X0X A;  3BNH A;  2CX9 A;  4JEK A;  3M9V A;  3D9G A;  2Z1Q A;  4N5F A;  2PG0 A;  3X0Y A;  2YYL A;  3MXL A;  3SXQ A;  2ZAF A;  4L1F A;  3BNJ A;  3GM6 A;  3L1T A;  3D6B A;  4L3Z A;  4Q1O A;  3OWA A;  2C0U A;  1SIR A;  3R7K A;  1EGD A;  3D9E A;  5K3I A;  2DDH A;  4Q0T A;  1UDY A;  1EGC A;  3MPJ A;  3OIB A;  4NXL A;  4IV6 A;  3OWM A;  3II9 A;  4ZXV A;  4ZYJ A;  1R2J A;  2R0N A;  3FO3 A;  1U8V A;  1SIQ A;  3MDD A;  2YYK A;  3BNF A;  3UU9 A;  3P4T A;  2EBA A;  2DVL A;  4Q17 A;  2JBS A;  4O5M A;  2J7A A;  1T9G A;  1GU6 A;  2YYJ A;  2JBR A;  2YYG A;  2FON A;  4U83 A;  3BNG A;  3EON A;  3AFE A;  2OR0 A;  3GNC A;  1WS9 A;  2UXW A;  2OT4 A;  2E80 A;  3SF6 A;  3MPI A;  3B96 A;  4HR3 A;  1FS7 A;  3SCE A;  3F29 A;  4M9A A;  2IX5 A;  4P13 A;  2VR0 A;  2C12 A;  3TOR A;  3RKH A;  4IRN A;  5K3H A;  3MKH A;  4WJY A;  2JBT A;  3LGQ A;  4W9U A;  4OO2 A;  4XVX A;  3SWO A;  2RFQ A;  4KTO A;  4L3X A;  2YYM A;  1BUC A;  1FS8 A;  1OAH A;  3AFF A;  3LG1 A;  3MDE A;  3D1I A;  1JQI A;  2RF7 A;  3UBR A;  1RX0 A;  4Q5B A;  2VIG A;  2R0M A;  2JIF A;  1IS2 A;  3HWC A;  3MMO A;  3FCJ A;  1EGE A;  3D9D A;  2E81 A;  4L3Y A;  3S7W A;  2A1T A;  4G5E A;  2WBI A;  2REH A;  4X28 A;  1FS9 A;  4X28 C;  2IX6 A;  2ZO5 A;  3GQT A;  3NF4 A;  4L38 A;  4KCF A;  5K3G A;  2YYI A;  3TTB A;  3PFD A;  4RM7 A;  3EOM A;  4Q5C A;  2RDZ A;  1IVH A;  1W07 A;  1UKW A;  5K3J A;  4Q4U A;  2D29 A;  1QDB A;  4DOY A;  3D9F A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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