1IS2A

Crystal structure of peroxisomal acyl-coa oxidase-ii from rat liver
Total Genus 255
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
255
sequence length
655
structure length
637
Chain Sequence
MNPDLRKERASATFNPELITHILDGSPENTRRRREIENLILNDPDFQHEDYNFLTRSQRYEVAVKKSATMVKKMREYGISDPEEIMWFKNSVHRGHPEPLDLHLGMFLPTLLHQATAEQQERFFMPAWNLEITGTYAQTEMGHGTHLRGLETTATYDPKTQEFILNSPTVTSIKWWPGGLGKTSNHAIVLAQLITQGECYGLHAFVVPIREIGTHKPLPGITVGDIGPKFGYEEMDNGYLKMDNYRIPRENMLMKYAQVKPDGTYVKKLTYGTMVFVRSFLVGNAAQSLSKACTIAIRYSAVRRQSEIKQSEPEPQILDFQTQQYKLFPLLATAYAFHFVGRYMKETYLRINESIGQGDLSELPELHALTAGLKAFTTWTANAGIEECRMACGGHGYSHSSGIPNIYVTFTPACTFEGENTVMMLQTARFLMKIYDQVRSGKLVGGMVSYLNDLPSVDINSLEGLTEAYKLRAARLVEIAAKNLQTHVSHRKSKEVAWNLTSVDLVRASEAHCHYVVVKVFSDKLPKIQDKAVQAVLRNLCLLYSLYGISQKGGDFLEGSIITGAQLSQVNARILELLTLIRPNAVALVDAFDFKDMTLGSVLGRYDGNVYENLFEWAKKSPLNKTEVHESYHKHLK
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords acyl-CoA oxidase
publication title Three-dimensional structure of the flavoenzyme acyl-CoA oxidase-II from rat liver, the peroxisomal counterpart of mitochondrial acyl-CoA dehydrogenase.
pubmed rcsb
source organism Rattus norvegicus
molecule tags Oxidoreductase
total genus 255
structure length 637
sequence length 655
chains with identical sequence B
ec nomenclature ec 1.3.3.6: Acyl-CoA oxidase.
pdb deposition date 2001-11-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01756 ACOX Acyl-CoA oxidase
A PF02770 Acyl-CoA_dh_M Acyl-CoA dehydrogenase, middle domain
A PF14749 Acyl-CoA_ox_N Acyl-coenzyme A oxidase N-terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.540.10 Mainly Alpha Orthogonal Bundle Butyryl-Coa Dehydrogenase, subunit A; domain 1 Acyl-CoA dehydrogenase/oxidase, N-terminal domain 1is2A01
1.20.140.10 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A; domain 3 Butyryl-CoA Dehydrogenase, subunit A, domain 3 1is2A03
1.20.140.10 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A; domain 3 Butyryl-CoA Dehydrogenase, subunit A, domain 3 1is2A04
2.40.110.10 Mainly Beta Beta Barrel Butyryl-CoA Dehydrogenase, subunit A; domain 2 Butyryl-CoA Dehydrogenase, subunit A, domain 2 1is2A02
2YYJA 3MMOA 2REHA 2JBSA 4RM7A 4U83A 4IV6A 3X0XA 4Q0TA 3R7KA 4OO2A 2IX6A 4IRNA 3BNGA 2OR0A 4P13A 3MDDA 3MXLA 2VR0A 4HR3A 2R0MA 3X0YA 2UXWA 4L3YA 3MPIA 3TTBA 3EOMA 3LG1A 2E81A 1SIRA 1IS2A 2PG0A 1W07A 2JIFA 1EGCA 3OWAA 2D29A 2CX9A 2OT4A 4Q1OA 1QDBA 3GNCA 4WJYA 3D1IA 2ZO5A 2C0UA 3MDEA 2J7AA 4W9UA 2ZAFA 4Q5CA 2EBAA 1T9GA 3EONA 4Q5BA 3RKHA 2RF7A 2YYIA 2R0NA 3MPJA 3OWMA 5K3GA 3AFFA 2WBIA 1FS9A 4G5EA 1OAHA 1U8VA 4ZXVA 4L3ZA 2YYLA 1WS9A 3UU9A 1RX0A 4X28A 3S7WA 5K3IA 2DDHA 4JEKA 2FONA 4DOYA 3PFDA 3SWOA 1FS8A 4NXLA 3BNJA 3LGQA 3SCEA 3II9A 3F29A 1EGEA 3BNHA 2C12A 1BUCA 3TORA 3HWCA 3GM6A 1IVHA 2VIGA 3D9DA 3GQTA 4L1FA 4ZYJA 3SF6A 2YYGA 3FO3A 4N5FA 3M9VA 1GU6A 3D9FA 3OIBA 2A1TA 4L3XA 1UDYA 3D9EA 1UKWA 3D6BA 4X28C 2E80A 1FS7A 1SIQA 2YYKA 5K3HA 4L38A 4Q4UA 3AFEA 3P4TA 3UBRA 3MKHA 2IX5A 4XVXA 1JQIA 3NF4A 2YYMA 5K3JA 3D9GA 3FCJA 2DVLA 1EGDA 2RDZA 4M9AA 3BNFA 3SXQA 3L1TA 2JBRA 1R2JA 2JBTA 4KCFA 4KTOA 2RFQA 3B96A 4Q17A 2Z1QA 4O5MA
chains in the Genus database with same CATH superfamily
1X91A 5M4MA 2YYJA 3MMOA 2REHA 2JBSA 4RM7A 4U83A 4IV6A 1SC5A 1R3BA 3X0XA 3VKHA 3DJLA 4Q0TA 3R7KA 1XFZA 4MPNA 4AKIA 2FP1A 4G97A 3U33A 5EZ3A 4LQSB 4OO2A 5B6BA 2IX6A 4IRNA 1K93A 4KSAA 3BNGA 2OR0A 2GBBA 4P13A 3MDDA 4HKRA 5M4PA 4F0XA 3MXLA 4FF2A 1XFVA 2VR0A 4HR3A 2R0MA 1PK0A 3X0YA 5M4KA 2EBFX 2UXWA 3CRKA 4L3YA 3MPIA 3C2PA 3TTBA 3EOMA 3LG1A 2E81A 1SIRA 1IS2A 2PG0A 1W07A 2BTZA 3KMLA 4E02A 4QICA 2JIFA 1K8TA 2XS8A 2Q8FA 1EGCA 4KSFA 3OWAA 1PI1A 1X90A 2D29A 5B5WA 1K90A 2CX9A 3N0RA 1GKXA 4JIOA 2OT4A 3X29A 4Q1OA 1QDBA 3GNCA 4WJYA 3D1IA 4FF1A 3CRLA 2ZO5A 2C0UA 3MDEA 1SK6A 2R03A 2ZKJA 4FF4A 2J7AA 4W9UA 2ZAFA 4Q5CA 4V25A 2E0AA 2VF1A 2EBAA 3TZ0A 1T9GA 3EONA 4Q5BA 3RKHA 2RF7A 2Q8HA 2R05A 2R0NA 3MPJA 2YYIA 2OJQA 3OWMA 4AKGA 3C3LA 5K3GA 3AFFA 2Q8GA 3TZ5A 4AI6A 2WBIA 1FS9A 1XFWA 1XFYA 2LFWA 1OAHA 1U8VA 4ZXVA 2BU5A 4G5EA 5J6AA 2BU2A 2QR4A 4L3ZA 4AKHA 2XQRB 1Y8OA 2YYLA 1WS9A 1LVCA 1RJ4A 3UU9A 1RJ1A 1RX0A 4X28A 2HJNA 3S7WA 4FF3A 2R02A 4HKSA 2CJ8A 5K3IA 2DDHA 4JEKA 2FONA 4DOYA 1RP3A 2OEVA 3PFDA 3SWOA 1FS8A 4NXLA 2EBHX 3BNJA 3LGQA 3II9A 3SCEA 3F29A 5J71A 5GJWE 4J1VA 1EGEA 4MPEA 2BU8A 5M4NA 2CJ5A 3BNHA 2C12A 1BUCA 2Q8IA 3HWCA 3TORA 1GKZA 1Y0VA 1IVHA 3GM6A 1XFUA 2VIGA 1XG2B 3D9DA 3GQTA 5BRKA 4L1FA 3Q24A 4ZYJA 3SF6A 2YGWA 4E01A 2YYGA 3FO3A 4N5FA 4DZYA 3M9VA 5BRMA 1JM6A 1GU6A 1X8ZA 1Y8PA 3D9FA 3OIBA 4FZ4A 3VADA 3Q0AA 2BU7A 2A1TA 4L3XA 1UDYA 1GJVA 4P79A 4H85A 4E00A 5GJVE 4H81A 3D9EA 3CE2A 5B5VA 2AO2A 3VKGA 1UKWA 3D6BA 4X28C 2E80A 1FS7A 1SIQA 2XS1A 5K3HA 2PNRA 2YYKA 4JIZA 4L38A 4MP2A 4Q4UA 3TZ2A 3AFEA 3P4TA 1Y8NA 2PO4A 3UBRA 2CJ6A 3Q23A 3MKHA 2IX5A 4XVXA 1JQIA 3C46A 3Q22A 2OEXA 3NF4A 2YYMA 4MPCA 2FP2A 2EC5A 1XFXA 4H7QA 5K3JA 1S26A 3D9GA 3FCJA 2DVLA 1EGDA 2AZEA 2ZDYA 4KS9A 4V26A 2RDZA 4M9AA 3BNFA 3TZ4A 3SXQA 3L1TA 2JBRA 1R2JA 2F6LA 4MP7A 3D2RA 2JBTA 4KCFA 4KTOA 2RFQA 3B96A 2CJ7A 2ZDXA 4Q17A 4LQQB 2CJ4A 2BU6A 2Z1QA 4O5MA
chains in the Genus database with same CATH topology
2YYJA 3MMOA 2REHA 2JBSA 4RM7A 4U83A 4IV6A 3X0XA 4Q0TA 3R7KA 4OO2A 2IX6A 4IRNA 3BNGA 2OR0A 4P13A 3MDDA 3MXLA 2VR0A 4HR3A 2R0MA 3X0YA 2UXWA 4L3YA 3MPIA 3TTBA 3EOMA 3LG1A 2E81A 1SIRA 1IS2A 2PG0A 1W07A 2JIFA 1EGCA 3OWAA 2D29A 2CX9A 2OT4A 4Q1OA 1QDBA 3GNCA 4WJYA 3D1IA 2ZO5A 2C0UA 3MDEA 2J7AA 4W9UA 2ZAFA 4Q5CA 2EBAA 1T9GA 3EONA 4Q5BA 3RKHA 2RF7A 2YYIA 2R0NA 3MPJA 3OWMA 5K3GA 3AFFA 2WBIA 1FS9A 4G5EA 1OAHA 1U8VA 4ZXVA 4L3ZA 2YYLA 1WS9A 3UU9A 1RX0A 4X28A 3S7WA 5K3IA 2DDHA 4JEKA 2FONA 4DOYA 3PFDA 3SWOA 1FS8A 4NXLA 3BNJA 3LGQA 3SCEA 3II9A 3F29A 1EGEA 3BNHA 2C12A 1BUCA 3TORA 3HWCA 3GM6A 1IVHA 2VIGA 3D9DA 3GQTA 4L1FA 4ZYJA 3SF6A 2YYGA 3FO3A 4N5FA 3M9VA 1GU6A 3D9FA 3OIBA 2A1TA 4L3XA 1UDYA 3D9EA 1UKWA 3D6BA 4X28C 2E80A 1FS7A 1SIQA 2YYKA 5K3HA 4L38A 4Q4UA 3AFEA 3P4TA 3UBRA 3MKHA 2IX5A 4XVXA 1JQIA 3NF4A 2YYMA 5K3JA 3D9GA 3FCJA 2DVLA 1EGDA 2RDZA 4M9AA 3BNFA 3SXQA 3L1TA 2JBRA 1R2JA 2JBTA 4KCFA 4KTOA 2RFQA 3B96A 4Q17A 2Z1QA 4O5MA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2YYJ A;  3MMO A;  2REH A;  2JBS A;  4RM7 A;  4U83 A;  4IV6 A;  3X0X A;  4Q0T A;  3R7K A;  4OO2 A;  2IX6 A;  4IRN A;  3BNG A;  2OR0 A;  4P13 A;  3MDD A;  3MXL A;  2VR0 A;  4HR3 A;  2R0M A;  3X0Y A;  2UXW A;  4L3Y A;  3MPI A;  3TTB A;  3EOM A;  3LG1 A;  2E81 A;  1SIR A;  1IS2 A;  2PG0 A;  1W07 A;  2JIF A;  1EGC A;  3OWA A;  2D29 A;  2CX9 A;  2OT4 A;  4Q1O A;  1QDB A;  3GNC A;  4WJY A;  3D1I A;  2ZO5 A;  2C0U A;  3MDE A;  2J7A A;  4W9U A;  2ZAF A;  4Q5C A;  2EBA A;  1T9G A;  3EON A;  4Q5B A;  3RKH A;  2RF7 A;  2YYI A;  2R0N A;  3MPJ A;  3OWM A;  5K3G A;  3AFF A;  2WBI A;  1FS9 A;  4G5E A;  1OAH A;  1U8V A;  4ZXV A;  4L3Z A;  2YYL A;  1WS9 A;  3UU9 A;  1RX0 A;  4X28 A;  3S7W A;  5K3I A;  2DDH A;  4JEK A;  2FON A;  4DOY A;  3PFD A;  3SWO A;  1FS8 A;  4NXL A;  3BNJ A;  3LGQ A;  3SCE A;  3II9 A;  3F29 A;  1EGE A;  3BNH A;  2C12 A;  1BUC A;  3TOR A;  3HWC A;  3GM6 A;  1IVH A;  2VIG A;  3D9D A;  3GQT A;  4L1F A;  4ZYJ A;  3SF6 A;  2YYG A;  3FO3 A;  4N5F A;  3M9V A;  1GU6 A;  3D9F A;  3OIB A;  2A1T A;  4L3X A;  1UDY A;  3D9E A;  1UKW A;  3D6B A;  4X28 C;  2E80 A;  1FS7 A;  1SIQ A;  2YYK A;  5K3H A;  4L38 A;  4Q4U A;  3AFE A;  3P4T A;  3UBR A;  3MKH A;  2IX5 A;  4XVX A;  1JQI A;  3NF4 A;  2YYM A;  5K3J A;  3D9G A;  3FCJ A;  2DVL A;  1EGD A;  2RDZ A;  4M9A A;  3BNF A;  3SXQ A;  3L1T A;  2JBR A;  1R2J A;  2JBT A;  4KCF A;  4KTO A;  2RFQ A;  3B96 A;  4Q17 A;  2Z1Q A;  4O5M A; 
#chains in the Genus database with same CATH topology
 1X91 A;  5M4M A;  2YYJ A;  3MMO A;  2REH A;  2JBS A;  4RM7 A;  4U83 A;  4IV6 A;  1SC5 A;  1R3B A;  3X0X A;  3VKH A;  3DJL A;  4Q0T A;  3R7K A;  1XFZ A;  4MPN A;  4AKI A;  2FP1 A;  4G97 A;  3U33 A;  5EZ3 A;  4LQS B;  4OO2 A;  5B6B A;  2IX6 A;  4IRN A;  1K93 A;  4KSA A;  3BNG A;  2OR0 A;  2GBB A;  4P13 A;  3MDD A;  4HKR A;  5M4P A;  4F0X A;  3MXL A;  4FF2 A;  1XFV A;  2VR0 A;  4HR3 A;  2R0M A;  1PK0 A;  3X0Y A;  5M4K A;  2EBF X;  2UXW A;  3CRK A;  4L3Y A;  3MPI A;  3C2P A;  3TTB A;  3EOM A;  3LG1 A;  2E81 A;  1SIR A;  1IS2 A;  2PG0 A;  1W07 A;  2BTZ A;  3KML A;  4E02 A;  4QIC A;  2JIF A;  1K8T A;  2XS8 A;  2Q8F A;  1EGC A;  4KSF A;  3OWA A;  1PI1 A;  1X90 A;  2D29 A;  5B5W A;  1K90 A;  2CX9 A;  3N0R A;  1GKX A;  4JIO A;  2OT4 A;  3X29 A;  4Q1O A;  1QDB A;  3GNC A;  4WJY A;  3D1I A;  4FF1 A;  3CRL A;  2ZO5 A;  2C0U A;  3MDE A;  1SK6 A;  2R03 A;  2ZKJ A;  4FF4 A;  2J7A A;  4W9U A;  2ZAF A;  4Q5C A;  4V25 A;  2E0A A;  2VF1 A;  2EBA A;  3TZ0 A;  1T9G A;  3EON A;  4Q5B A;  3RKH A;  2RF7 A;  2Q8H A;  2R05 A;  2R0N A;  3MPJ A;  2YYI A;  2OJQ A;  3OWM A;  4AKG A;  3C3L A;  5K3G A;  3AFF A;  2Q8G A;  3TZ5 A;  4AI6 A;  2WBI A;  1FS9 A;  1XFW A;  1XFY A;  2LFW A;  1OAH A;  1U8V A;  4ZXV A;  2BU5 A;  4G5E A;  5J6A A;  2BU2 A;  2QR4 A;  4L3Z A;  4AKH A;  2XQR B;  1Y8O A;  2YYL A;  1WS9 A;  1LVC A;  1RJ4 A;  3UU9 A;  1RJ1 A;  1RX0 A;  4X28 A;  2HJN A;  3S7W A;  4FF3 A;  2R02 A;  4HKS A;  2CJ8 A;  5K3I A;  2DDH A;  4JEK A;  2FON A;  4DOY A;  1RP3 A;  2OEV A;  3PFD A;  3SWO A;  1FS8 A;  4NXL A;  2EBH X;  3BNJ A;  3LGQ A;  3II9 A;  3SCE A;  3F29 A;  5J71 A;  5GJW E;  4J1V A;  1EGE A;  4MPE A;  2BU8 A;  5M4N A;  2CJ5 A;  3BNH A;  2C12 A;  1BUC A;  2Q8I A;  3HWC A;  3TOR A;  1GKZ A;  1Y0V A;  1IVH A;  3GM6 A;  1XFU A;  2VIG A;  1XG2 B;  3D9D A;  3GQT A;  5BRK A;  4L1F A;  3Q24 A;  4ZYJ A;  3SF6 A;  2YGW A;  4E01 A;  2YYG A;  3FO3 A;  4N5F A;  4DZY A;  3M9V A;  5BRM A;  1JM6 A;  1GU6 A;  1X8Z A;  1Y8P A;  3D9F A;  3OIB A;  4FZ4 A;  3VAD A;  3Q0A A;  2BU7 A;  2A1T A;  4L3X A;  1UDY A;  1GJV A;  4P79 A;  4H85 A;  4E00 A;  5GJV E;  4H81 A;  3D9E A;  3CE2 A;  5B5V A;  2AO2 A;  3VKG A;  1UKW A;  3D6B A;  4X28 C;  2E80 A;  1FS7 A;  1SIQ A;  2XS1 A;  5K3H A;  2PNR A;  2YYK A;  4JIZ A;  4L38 A;  4MP2 A;  4Q4U A;  3TZ2 A;  3AFE A;  3P4T A;  1Y8N A;  2PO4 A;  3UBR A;  2CJ6 A;  3Q23 A;  3MKH A;  2IX5 A;  4XVX A;  1JQI A;  3C46 A;  3Q22 A;  2OEX A;  3NF4 A;  2YYM A;  4MPC A;  2FP2 A;  2EC5 A;  1XFX A;  4H7Q A;  5K3J A;  1S26 A;  3D9G A;  3FCJ A;  2DVL A;  1EGD A;  2AZE A;  2ZDY A;  4KS9 A;  4V26 A;  2RDZ A;  4M9A A;  3BNF A;  3TZ4 A;  3SXQ A;  3L1T A;  2JBR A;  1R2J A;  2F6L A;  4MP7 A;  3D2R A;  2JBT A;  4KCF A;  4KTO A;  2RFQ A;  3B96 A;  2CJ7 A;  2ZDX A;  4Q17 A;  4LQQ B;  2CJ4 A;  2BU6 A;  2Z1Q A;  4O5M A; 
#chains in the Genus database with same CATH homology
 2YYJ A;  3MMO A;  2REH A;  2JBS A;  4RM7 A;  4U83 A;  4IV6 A;  3X0X A;  4Q0T A;  3R7K A;  4OO2 A;  2IX6 A;  4IRN A;  3BNG A;  2OR0 A;  4P13 A;  3MDD A;  3MXL A;  2VR0 A;  4HR3 A;  2R0M A;  3X0Y A;  2UXW A;  4L3Y A;  3MPI A;  3TTB A;  3EOM A;  3LG1 A;  2E81 A;  1SIR A;  1IS2 A;  2PG0 A;  1W07 A;  2JIF A;  1EGC A;  3OWA A;  2D29 A;  2CX9 A;  2OT4 A;  4Q1O A;  1QDB A;  3GNC A;  4WJY A;  3D1I A;  2ZO5 A;  2C0U A;  3MDE A;  2J7A A;  4W9U A;  2ZAF A;  4Q5C A;  2EBA A;  1T9G A;  3EON A;  4Q5B A;  3RKH A;  2RF7 A;  2YYI A;  2R0N A;  3MPJ A;  3OWM A;  5K3G A;  3AFF A;  2WBI A;  1FS9 A;  4G5E A;  1OAH A;  1U8V A;  4ZXV A;  4L3Z A;  2YYL A;  1WS9 A;  3UU9 A;  1RX0 A;  4X28 A;  3S7W A;  5K3I A;  2DDH A;  4JEK A;  2FON A;  4DOY A;  3PFD A;  3SWO A;  1FS8 A;  4NXL A;  3BNJ A;  3LGQ A;  3SCE A;  3II9 A;  3F29 A;  1EGE A;  3BNH A;  2C12 A;  1BUC A;  3TOR A;  3HWC A;  3GM6 A;  1IVH A;  2VIG A;  3D9D A;  3GQT A;  4L1F A;  4ZYJ A;  3SF6 A;  2YYG A;  3FO3 A;  4N5F A;  3M9V A;  1GU6 A;  3D9F A;  3OIB A;  2A1T A;  4L3X A;  1UDY A;  3D9E A;  1UKW A;  3D6B A;  4X28 C;  2E80 A;  1FS7 A;  1SIQ A;  2YYK A;  5K3H A;  4L38 A;  4Q4U A;  3AFE A;  3P4T A;  3UBR A;  3MKH A;  2IX5 A;  4XVX A;  1JQI A;  3NF4 A;  2YYM A;  5K3J A;  3D9G A;  3FCJ A;  2DVL A;  1EGD A;  2RDZ A;  4M9A A;  3BNF A;  3SXQ A;  3L1T A;  2JBR A;  1R2J A;  2JBT A;  4KCF A;  4KTO A;  2RFQ A;  3B96 A;  4Q17 A;  2Z1Q A;  4O5M A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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