3U33A

Crystal structure of the e. coli adaptive response protein aidb in the space group p3(2)
Total Genus 205
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
205
sequence length
540
structure length
540
Chain Sequence
MHWQTHTVFNQPIPLNNSNLYLSDGALCEAVTREGAGWDSDFLASIGQQLGTAESLELGRLANVNPPELLRYDAQGRRLDDVRFHPAWHLLMQALCTNRVHNLAWEEDARSGAFVARAARFMLHAQVEAGSLCPITMTFAATPLLLQMLPAPFQDWTTPLLSDRYDSHLLPGGQKRGLLIGMGMTEKQGGSDVMSNTTRAERLEDGSYRLVGHKWFFSVPQSDAHLVLAQTAGGLSCFFVPRFLPDGQRNAIRLERLKDKLGNRSNASCEVEFQDAIGWLLGLEGEGIRLILKMGGMTRFDCALGSHAMMRRAFSLAIYHAHQRHVFGNPLIQQPLMRHVLSRMALQLEGQTALLFRLARAWDRRADAKEALWARLFTPAAKFVICKRGMPFVAEAMEVLGGIGYCEESELPRLYREMPVNSIWEGSGNIMCLDVLRVLNKQAGVYDLLSEAFVEVKGQDRYFDRAVRRLQQQLRKPAEELGREITHQLFLLGCGAQMLKYASPPMAQAWCQVMLDTRGGVRLSEQIQNDLLLRATGGVC
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Putative acyl-CoA dehydrogenase AidB
publication title Flavin-induced oligomerization in Escherichia coli adaptive response protein AidB.
pubmed doi rcsb
source organism Escherichia coli k-12
molecule tags Oxidoreductase
total genus 205
structure length 540
sequence length 540
chains with identical sequence B, C, D, E, F, G, H, I, J, K, L
ec nomenclature ec 1.3.99.-:
pdb deposition date 2011-10-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00441 Acyl-CoA_dh_1 Acyl-CoA dehydrogenase, C-terminal domain
A PF02770 Acyl-CoA_dh_M Acyl-CoA dehydrogenase, middle domain
A PF18158 AidB_N Adaptive response protein AidB N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.110.20 Mainly Beta Beta Barrel Butyryl-CoA Dehydrogenase, subunit A; domain 2 Butyryl-CoA Dehydrogenase, subunit A; domain 2 3u33A03
5EZ3A 3DJLA 3U33A
chains in the Genus database with same CATH superfamily
1JQIA 2UXWA 1EGDA 3M9VA 1W07A 2D29A 3D9EA 3MPIA 2IX6A 1WS9A 3MDDA 3II9A 4W9UA 2ZAFA 2YYKA 2C12A 4XVXA 2RFQA 3GNCA 3P4TA 3MDEA 3PFDA 5EZ3A 3AFEA 1EGCA 2YYIA 4KTOA 1EGEA 2WBIA 1IVHA 2YYGA 3D6BA 3NF4A 3B96A 4N5FA 4P13A 3AFFA 2YYMA 2FONA 4M9AA 2DVLA 3SF6A 2YYJA 3EOMA 3OIBA 3D9FA 3HWCA 5K3GA 3MPJA 2CX9A 5K3IA 1U8VA 3R7KA 4IRNA 4O5MA 3D9DA 1UDYA 4HR3A 3X0XA 3OWAA 3MXLA 4X28C 2R0MA 2Z1QA 4JEKA 2IX5A 2JIFA 4G5EA 2C0UA 2JBSA 4IV6A 4ZYJA 1UKWA 4X28A 2DDHA 2JBTA 4DOYA 4ZXVA 4L1FA 3EONA 3GQTA 2REHA 2OR0A 2A1TA 3D9GA 3DJLA 4KCFA 1R2JA 3U33A 1IS2A 2R0NA 4U83A 2VIGA 1SIQA 1RX0A 1BUCA 3FCJA 5K3JA 2PG0A 4RM7A 1T9GA 4NXLA 3X0YA 3SWOA 2EBAA 5K3HA 1SIRA 2YYLA 2JBRA 3MKHA
chains in the Genus database with same CATH topology
5EZ3A 3DJLA 3U33A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5EZ3 A;  3DJL A;  3U33 A; 
#chains in the Genus database with same CATH topology
 1JQI A;  2UXW A;  1EGD A;  3M9V A;  1W07 A;  2D29 A;  3D9E A;  3MPI A;  2IX6 A;  1WS9 A;  3MDD A;  3II9 A;  4W9U A;  2ZAF A;  2YYK A;  2C12 A;  4XVX A;  2RFQ A;  3GNC A;  3P4T A;  3MDE A;  3PFD A;  5EZ3 A;  3AFE A;  1EGC A;  2YYI A;  4KTO A;  1EGE A;  2WBI A;  1IVH A;  2YYG A;  3D6B A;  3NF4 A;  3B96 A;  4N5F A;  4P13 A;  3AFF A;  2YYM A;  2FON A;  4M9A A;  2DVL A;  3SF6 A;  2YYJ A;  3EOM A;  3OIB A;  3D9F A;  3HWC A;  5K3G A;  3MPJ A;  2CX9 A;  5K3I A;  1U8V A;  3R7K A;  4IRN A;  4O5M A;  3D9D A;  1UDY A;  4HR3 A;  3X0X A;  3OWA A;  3MXL A;  4X28 C;  2R0M A;  2Z1Q A;  4JEK A;  2IX5 A;  2JIF A;  4G5E A;  2C0U A;  2JBS A;  4IV6 A;  4ZYJ A;  1UKW A;  4X28 A;  2DDH A;  2JBT A;  4DOY A;  4ZXV A;  4L1F A;  3EON A;  3GQT A;  2REH A;  2OR0 A;  2A1T A;  3D9G A;  3DJL A;  4KCF A;  1R2J A;  3U33 A;  1IS2 A;  2R0N A;  4U83 A;  2VIG A;  1SIQ A;  1RX0 A;  1BUC A;  3FCJ A;  5K3J A;  2PG0 A;  4RM7 A;  1T9G A;  4NXL A;  3X0Y A;  3SWO A;  2EBA A;  5K3H A;  1SIR A;  2YYL A;  2JBR A;  3MKH A; 
#chains in the Genus database with same CATH homology
 5EZ3 A;  3DJL A;  3U33 A; 
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similar chains in the Genus database (?% sequence similarity)
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#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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