1SIQA

The crystal structure and mechanism of human glutaryl-coa dehydrogenase
Total Genus 151
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
151
sequence length
390
structure length
390
Chain Sequence
EFDWQDPLVLEEQLTTDEILIRDTFRTYCQERLMPRILLANRNEVFHREIISEMGELGVLGPTIKGYGCAGVSSVAYGLLARELERVDSGYRSAMSVQSSLVMHPIYAYGSEEQRQKYLPQLAKGELLGCFGLTEPNSGSDPSSMETRAHYNSSNKSYTLNGTKTWITNSPMADLFVVWARCEDGCIRGFLLEKGMRGLSAPRIQGKFSLRASATGMIIMDGVEVPEENVLPGASSLGGPFGCLNNARYGIAWGVLGASEFCLHTARQYALDRMQFGVPLARNQLIQKKLADMLTEITLGLHACLQLGRLKDQDKAAPEMVSLLKRNNCGKALDIARQARDMLGGNGISDEYHVIRHAMNLEAVNTYEGTHDIHALILGRAITGIQAFTA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords Glutaryl-CoA dehydrogenase
publication title Crystal Structures of Human Glutaryl-CoA Dehydrogenase with and without an Alternate Substrate: Structural Bases of Dehydrogenation and Decarboxylation Reactions
pubmed doi rcsb
total genus 151
structure length 390
sequence length 390
ec nomenclature ec 1.3.8.6: Glutaryl-CoA dehydrogenase (ETF).
pdb deposition date 2004-03-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00441 Acyl-CoA_dh_1 Acyl-CoA dehydrogenase, C-terminal domain
A PF02770 Acyl-CoA_dh_M Acyl-CoA dehydrogenase, middle domain
A PF02771 Acyl-CoA_dh_N Acyl-CoA dehydrogenase, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.540.10 Mainly Alpha Orthogonal Bundle Butyryl-Coa Dehydrogenase, subunit A; domain 1 Acyl-CoA dehydrogenase/oxidase, N-terminal domain 1siqA01
1.20.140.10 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A; domain 3 Butyryl-CoA Dehydrogenase, subunit A, domain 3 1siqA03
2.40.110.10 Mainly Beta Beta Barrel Butyryl-CoA Dehydrogenase, subunit A; domain 2 Butyryl-CoA Dehydrogenase, subunit A, domain 2 1siqA02
2RFQA 4M9AA 4Q5BA 1QDBA 4X28C 2CX9A 3GNCA 3F29A 3OIBA 3BNHA 1W07A 3R7KA 2JBRA 2RDZA 4HR3A 3D9DA 2DVLA 3MPJA 3LG1A 5K3JA 4XVXA 3AFFA 5K3HA 2OR0A 3II9A 2JBSA 1FS8A 2DDHA 4Q0TA 1EGCA 1R2JA 3AFEA 3P4TA 4Q1OA 4L3ZA 2VR0A 2E81A 2WBIA 1EGEA 2ZO5A 4KTOA 4L3XA 2R0NA 1FS7A 3SWOA 3D6BA 3LGQA 2REHA 4Q5CA 2IX5A 2VIGA 3B96A 1WS9A 1EGDA 2C0UA 4KCFA 3MDDA 4G5EA 3D9GA 3NF4A 4L1FA 3UBRA 2YYMA 3MKHA 4ZYJA 3M9VA 4JEKA 3SCEA 1FS9A 3BNFA 5K3GA 3GM6A 2OT4A 3D9FA 3TTBA 4ZXVA 2A1TA 1BUCA 3OWMA 3OWAA 2FONA 1GU6A 1JQIA 1IVHA 1U8VA 2IX6A 3X0XA 3X0YA 2J7AA 4L3YA 1RX0A 3RKHA 3D1IA 2PG0A 2YYGA 2E80A 4N5FA 3MMOA 4W9UA 4Q4UA 1OAHA 3MDEA 1SIRA 3HWCA 3BNJA 3BNGA 2JIFA 1UDYA 4IRNA 2ZAFA 2YYJA 3FCJA 4P13A 4U83A 2YYLA 4DOYA 3SXQA 3TORA 2EBAA 2JBTA 2D29A 3UU9A 3EONA 1IS2A 3MPIA 3L1TA 4IV6A 2YYIA 1UKWA 4OO2A 2C12A 4L38A 2RF7A 3D9EA 3PFDA 3EOMA 1SIQA 3SF6A 5K3IA 2Z1QA 2R0MA 4O5MA 3MXLA 4Q17A 4WJYA 2YYKA 3GQTA 2UXWA 4NXLA 3FO3A 3S7WA 1T9GA 4X28A 4RM7A
chains in the Genus database with same CATH superfamily
2R02A 2F6LA 4FZ4A 5M4MA 2RFQA 2R05A 4P79A 4M9AA 4Q5BA 5GJWE 1QDBA 1RJ1A 4X28C 2EC5A 4H81A 2CX9A 3Q23A 3Q0AA 3GNCA 3F29A 3OIBA 3BNHA 1W07A 3R7KA 4LQSB 1K8TA 1RJ4A 1XFWA 5J6AA 4H7QA 2JBRA 2RDZA 2BU5A 1Y0VA 5EZ3A 4HR3A 1GKZA 1PI1A 2ZDYA 2Q8IA 3D9DA 2DVLA 3MPJA 2AO2A 3LG1A 4LQQB 1S26A 5B6BA 5K3JA 4XVXA 3AFFA 5K3HA 4FF2A 2AZEA 2OR0A 3II9A 1JM6A 2JBSA 2BU7A 1SC5A 2CJ4A 2GBBA 1FS8A 2DDHA 4Q0TA 1EGCA 1R2JA 3AFEA 3P4TA 4Q1OA 4L3ZA 2VR0A 4HKSA 4JIZA 3TZ2A 2E81A 2WBIA 1EGEA 2ZO5A 4FF1A 4KTOA 5M4NA 3C2PA 4L3XA 2R0NA 1FS7A 3SWOA 3D6BA 2FP1A 2REHA 2BU8A 2XQRB 2XS1A 3LGQA 4JIOA 4Q5CA 2IX5A 2VIGA 5B5VA 4H85A 3B96A 2CJ7A 1WS9A 2R03A 3KMLA 4QICA 2CJ5A 5M4KA 1EGDA 5BRKA 2C0UA 4KCFA 4AI6A 3VADA 3MDDA 4G5EA 3VKGA 3D9GA 1PK0A 5M4PA 3NF4A 4L1FA 1XFXA 3UBRA 2YYMA 3MKHA 1GKXA 4ZYJA 3M9VA 4AKGA 1Y8PA 2BTZA 2OEXA 1Y8NA 4JEKA 5BRMA 3SCEA 3X29A 1FS9A 3C46A 2E0AA 3BNFA 4J1VA 5K3GA 3GM6A 2OT4A 3D9FA 2XS8A 3TTBA 4ZXVA 2OEVA 2A1TA 1BUCA 2ZKJA 1X8ZA 3CRKA 4E02A 4MPCA 3OWMA 3OWAA 3D2RA 2FONA 4HKRA 1GU6A 2FP2A 1JQIA 1IVHA 3U33A 1U8VA 2IX6A 4V26A 3X0XA 1K93A 3X0YA 1XFZA 2J7AA 4L3YA 1RX0A 3RKHA 3D1IA 2PG0A 2YYGA 5GJVE 2E80A 4DZYA 1LVCA 4N5FA 3MMOA 4W9UA 4G97A 1XFYA 4V25A 4Q4UA 1OAHA 3MDEA 1SIRA 1X90A 2QR4A 3BNJA 1Y8OA 2OJQA 2JIFA 2EBHX 1X91A 2BU6A 3BNGA 3CE2A 1UDYA 3C3LA 4IRNA 2LFWA 2ZAFA 1GJVA 2YYJA 3FCJA 2PO4A 1R3BA 4P13A 4U83A 2YYLA 3Q22A 3TZ0A 1RP3A 4MPNA 4DOYA 3SXQA 4AKIA 3TORA 2EBAA 2JBTA 1XFUA 3N0RA 4MPEA 2D29A 3UU9A 3EONA 2YGWA 5J71A 4F0XA 1K90A 1IS2A 3CRLA 3MPIA 3L1TA 4IV6A 2YYIA 1UKWA 4OO2A 4E00A 2BU2A 2C12A 2EBFX 3TZ4A 4KSAA 4FF3A 3Q24A 4L38A 2ZDXA 2CJ8A 4MP7A 1XFVA 2RF7A 3D9EA 4KSFA 4FF4A 3PFDA 3EOMA 1SK6A 1SIQA 3SF6A 5K3IA 2Q8HA 3HWCA 4E01A 2Z1QA 2HJNA 2R0MA 2Q8FA 4O5MA 3MXLA 4Q17A 4WJYA 3TZ5A 2VF1A 2Q8GA 3DJLA 2CJ6A 2PNRA 2YYKA 4AKHA 3GQTA 2UXWA 4NXLA 3FO3A 3S7WA 1XG2B 3VKHA 1T9GA 4MP2A 5B5WA 4X28A 4KS9A 4RM7A
chains in the Genus database with same CATH topology
2RFQA 4M9AA 4Q5BA 1QDBA 4X28C 2CX9A 3GNCA 3F29A 3OIBA 3BNHA 1W07A 3R7KA 2JBRA 2RDZA 4HR3A 3D9DA 2DVLA 3MPJA 3LG1A 5K3JA 4XVXA 3AFFA 5K3HA 2OR0A 3II9A 2JBSA 1FS8A 2DDHA 4Q0TA 1EGCA 1R2JA 3AFEA 3P4TA 4Q1OA 4L3ZA 2VR0A 2E81A 2WBIA 1EGEA 2ZO5A 4KTOA 4L3XA 2R0NA 1FS7A 3SWOA 3D6BA 3LGQA 2REHA 4Q5CA 2IX5A 2VIGA 3B96A 1WS9A 1EGDA 2C0UA 4KCFA 3MDDA 4G5EA 3D9GA 3NF4A 4L1FA 3UBRA 2YYMA 3MKHA 4ZYJA 3M9VA 4JEKA 3SCEA 1FS9A 3BNFA 5K3GA 3GM6A 2OT4A 3D9FA 3TTBA 4ZXVA 2A1TA 1BUCA 3OWMA 3OWAA 2FONA 1GU6A 1JQIA 1IVHA 1U8VA 2IX6A 3X0XA 3X0YA 2J7AA 4L3YA 1RX0A 3RKHA 3D1IA 2PG0A 2YYGA 2E80A 4N5FA 3MMOA 4W9UA 4Q4UA 1OAHA 3MDEA 1SIRA 3HWCA 3BNJA 3BNGA 2JIFA 1UDYA 4IRNA 2ZAFA 2YYJA 3FCJA 4P13A 4U83A 2YYLA 4DOYA 3SXQA 3TORA 2EBAA 2JBTA 2D29A 3UU9A 3EONA 1IS2A 3MPIA 3L1TA 4IV6A 2YYIA 1UKWA 4OO2A 2C12A 4L38A 2RF7A 3D9EA 3PFDA 3EOMA 1SIQA 3SF6A 5K3IA 2Z1QA 2R0MA 4O5MA 3MXLA 4Q17A 4WJYA 2YYKA 3GQTA 2UXWA 4NXLA 3FO3A 3S7WA 1T9GA 4X28A 4RM7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2RFQ A;  4M9A A;  4Q5B A;  1QDB A;  4X28 C;  2CX9 A;  3GNC A;  3F29 A;  3OIB A;  3BNH A;  1W07 A;  3R7K A;  2JBR A;  2RDZ A;  4HR3 A;  3D9D A;  2DVL A;  3MPJ A;  3LG1 A;  5K3J A;  4XVX A;  3AFF A;  5K3H A;  2OR0 A;  3II9 A;  2JBS A;  1FS8 A;  2DDH A;  4Q0T A;  1EGC A;  1R2J A;  3AFE A;  3P4T A;  4Q1O A;  4L3Z A;  2VR0 A;  2E81 A;  2WBI A;  1EGE A;  2ZO5 A;  4KTO A;  4L3X A;  2R0N A;  1FS7 A;  3SWO A;  3D6B A;  3LGQ A;  2REH A;  4Q5C A;  2IX5 A;  2VIG A;  3B96 A;  1WS9 A;  1EGD A;  2C0U A;  4KCF A;  3MDD A;  4G5E A;  3D9G A;  3NF4 A;  4L1F A;  3UBR A;  2YYM A;  3MKH A;  4ZYJ A;  3M9V A;  4JEK A;  3SCE A;  1FS9 A;  3BNF A;  5K3G A;  3GM6 A;  2OT4 A;  3D9F A;  3TTB A;  4ZXV A;  2A1T A;  1BUC A;  3OWM A;  3OWA A;  2FON A;  1GU6 A;  1JQI A;  1IVH A;  1U8V A;  2IX6 A;  3X0X A;  3X0Y A;  2J7A A;  4L3Y A;  1RX0 A;  3RKH A;  3D1I A;  2PG0 A;  2YYG A;  2E80 A;  4N5F A;  3MMO A;  4W9U A;  4Q4U A;  1OAH A;  3MDE A;  1SIR A;  3HWC A;  3BNJ A;  3BNG A;  2JIF A;  1UDY A;  4IRN A;  2ZAF A;  2YYJ A;  3FCJ A;  4P13 A;  4U83 A;  2YYL A;  4DOY A;  3SXQ A;  3TOR A;  2EBA A;  2JBT A;  2D29 A;  3UU9 A;  3EON A;  1IS2 A;  3MPI A;  3L1T A;  4IV6 A;  2YYI A;  1UKW A;  4OO2 A;  2C12 A;  4L38 A;  2RF7 A;  3D9E A;  3PFD A;  3EOM A;  1SIQ A;  3SF6 A;  5K3I A;  2Z1Q A;  2R0M A;  4O5M A;  3MXL A;  4Q17 A;  4WJY A;  2YYK A;  3GQT A;  2UXW A;  4NXL A;  3FO3 A;  3S7W A;  1T9G A;  4X28 A;  4RM7 A; 
#chains in the Genus database with same CATH topology
 2R02 A;  2F6L A;  4FZ4 A;  5M4M A;  2RFQ A;  2R05 A;  4P79 A;  4M9A A;  4Q5B A;  5GJW E;  1QDB A;  1RJ1 A;  4X28 C;  2EC5 A;  4H81 A;  2CX9 A;  3Q23 A;  3Q0A A;  3GNC A;  3F29 A;  3OIB A;  3BNH A;  1W07 A;  3R7K A;  4LQS B;  1K8T A;  1RJ4 A;  1XFW A;  5J6A A;  4H7Q A;  2JBR A;  2RDZ A;  2BU5 A;  1Y0V A;  5EZ3 A;  4HR3 A;  1GKZ A;  1PI1 A;  2ZDY A;  2Q8I A;  3D9D A;  2DVL A;  3MPJ A;  2AO2 A;  3LG1 A;  4LQQ B;  1S26 A;  5B6B A;  5K3J A;  4XVX A;  3AFF A;  5K3H A;  4FF2 A;  2AZE A;  2OR0 A;  3II9 A;  1JM6 A;  2JBS A;  2BU7 A;  1SC5 A;  2CJ4 A;  2GBB A;  1FS8 A;  2DDH A;  4Q0T A;  1EGC A;  1R2J A;  3AFE A;  3P4T A;  4Q1O A;  4L3Z A;  2VR0 A;  4HKS A;  4JIZ A;  3TZ2 A;  2E81 A;  2WBI A;  1EGE A;  2ZO5 A;  4FF1 A;  4KTO A;  5M4N A;  3C2P A;  4L3X A;  2R0N A;  1FS7 A;  3SWO A;  3D6B A;  2FP1 A;  2REH A;  2BU8 A;  2XQR B;  2XS1 A;  3LGQ A;  4JIO A;  4Q5C A;  2IX5 A;  2VIG A;  5B5V A;  4H85 A;  3B96 A;  2CJ7 A;  1WS9 A;  2R03 A;  3KML A;  4QIC A;  2CJ5 A;  5M4K A;  1EGD A;  5BRK A;  2C0U A;  4KCF A;  4AI6 A;  3VAD A;  3MDD A;  4G5E A;  3VKG A;  3D9G A;  1PK0 A;  5M4P A;  3NF4 A;  4L1F A;  1XFX A;  3UBR A;  2YYM A;  3MKH A;  1GKX A;  4ZYJ A;  3M9V A;  4AKG A;  1Y8P A;  2BTZ A;  2OEX A;  1Y8N A;  4JEK A;  5BRM A;  3SCE A;  3X29 A;  1FS9 A;  3C46 A;  2E0A A;  3BNF A;  4J1V A;  5K3G A;  3GM6 A;  2OT4 A;  3D9F A;  2XS8 A;  3TTB A;  4ZXV A;  2OEV A;  2A1T A;  1BUC A;  2ZKJ A;  1X8Z A;  3CRK A;  4E02 A;  4MPC A;  3OWM A;  3OWA A;  3D2R A;  2FON A;  4HKR A;  1GU6 A;  2FP2 A;  1JQI A;  1IVH A;  3U33 A;  1U8V A;  2IX6 A;  4V26 A;  3X0X A;  1K93 A;  3X0Y A;  1XFZ A;  2J7A A;  4L3Y A;  1RX0 A;  3RKH A;  3D1I A;  2PG0 A;  2YYG A;  5GJV E;  2E80 A;  4DZY A;  1LVC A;  4N5F A;  3MMO A;  4W9U A;  4G97 A;  1XFY A;  4V25 A;  4Q4U A;  1OAH A;  3MDE A;  1SIR A;  1X90 A;  2QR4 A;  3BNJ A;  1Y8O A;  2OJQ A;  2JIF A;  2EBH X;  1X91 A;  2BU6 A;  3BNG A;  3CE2 A;  1UDY A;  3C3L A;  4IRN A;  2LFW A;  2ZAF A;  1GJV A;  2YYJ A;  3FCJ A;  2PO4 A;  1R3B A;  4P13 A;  4U83 A;  2YYL A;  3Q22 A;  3TZ0 A;  1RP3 A;  4MPN A;  4DOY A;  3SXQ A;  4AKI A;  3TOR A;  2EBA A;  2JBT A;  1XFU A;  3N0R A;  4MPE A;  2D29 A;  3UU9 A;  3EON A;  2YGW A;  5J71 A;  4F0X A;  1K90 A;  1IS2 A;  3CRL A;  3MPI A;  3L1T A;  4IV6 A;  2YYI A;  1UKW A;  4OO2 A;  4E00 A;  2BU2 A;  2C12 A;  2EBF X;  3TZ4 A;  4KSA A;  4FF3 A;  3Q24 A;  4L38 A;  2ZDX A;  2CJ8 A;  4MP7 A;  1XFV A;  2RF7 A;  3D9E A;  4KSF A;  4FF4 A;  3PFD A;  3EOM A;  1SK6 A;  1SIQ A;  3SF6 A;  5K3I A;  2Q8H A;  3HWC A;  4E01 A;  2Z1Q A;  2HJN A;  2R0M A;  2Q8F A;  4O5M A;  3MXL A;  4Q17 A;  4WJY A;  3TZ5 A;  2VF1 A;  2Q8G A;  3DJL A;  2CJ6 A;  2PNR A;  2YYK A;  4AKH A;  3GQT A;  2UXW A;  4NXL A;  3FO3 A;  3S7W A;  1XG2 B;  3VKH A;  1T9G A;  4MP2 A;  5B5W A;  4X28 A;  4KS9 A;  4RM7 A; 
#chains in the Genus database with same CATH homology
 2RFQ A;  4M9A A;  4Q5B A;  1QDB A;  4X28 C;  2CX9 A;  3GNC A;  3F29 A;  3OIB A;  3BNH A;  1W07 A;  3R7K A;  2JBR A;  2RDZ A;  4HR3 A;  3D9D A;  2DVL A;  3MPJ A;  3LG1 A;  5K3J A;  4XVX A;  3AFF A;  5K3H A;  2OR0 A;  3II9 A;  2JBS A;  1FS8 A;  2DDH A;  4Q0T A;  1EGC A;  1R2J A;  3AFE A;  3P4T A;  4Q1O A;  4L3Z A;  2VR0 A;  2E81 A;  2WBI A;  1EGE A;  2ZO5 A;  4KTO A;  4L3X A;  2R0N A;  1FS7 A;  3SWO A;  3D6B A;  3LGQ A;  2REH A;  4Q5C A;  2IX5 A;  2VIG A;  3B96 A;  1WS9 A;  1EGD A;  2C0U A;  4KCF A;  3MDD A;  4G5E A;  3D9G A;  3NF4 A;  4L1F A;  3UBR A;  2YYM A;  3MKH A;  4ZYJ A;  3M9V A;  4JEK A;  3SCE A;  1FS9 A;  3BNF A;  5K3G A;  3GM6 A;  2OT4 A;  3D9F A;  3TTB A;  4ZXV A;  2A1T A;  1BUC A;  3OWM A;  3OWA A;  2FON A;  1GU6 A;  1JQI A;  1IVH A;  1U8V A;  2IX6 A;  3X0X A;  3X0Y A;  2J7A A;  4L3Y A;  1RX0 A;  3RKH A;  3D1I A;  2PG0 A;  2YYG A;  2E80 A;  4N5F A;  3MMO A;  4W9U A;  4Q4U A;  1OAH A;  3MDE A;  1SIR A;  3HWC A;  3BNJ A;  3BNG A;  2JIF A;  1UDY A;  4IRN A;  2ZAF A;  2YYJ A;  3FCJ A;  4P13 A;  4U83 A;  2YYL A;  4DOY A;  3SXQ A;  3TOR A;  2EBA A;  2JBT A;  2D29 A;  3UU9 A;  3EON A;  1IS2 A;  3MPI A;  3L1T A;  4IV6 A;  2YYI A;  1UKW A;  4OO2 A;  2C12 A;  4L38 A;  2RF7 A;  3D9E A;  3PFD A;  3EOM A;  1SIQ A;  3SF6 A;  5K3I A;  2Z1Q A;  2R0M A;  4O5M A;  3MXL A;  4Q17 A;  4WJY A;  2YYK A;  3GQT A;  2UXW A;  4NXL A;  3FO3 A;  3S7W A;  1T9G A;  4X28 A;  4RM7 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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