1SIQA

The crystal structure and mechanism of human glutaryl-coa dehydrogenase
Total Genus 151
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
151
sequence length
390
structure length
390
Chain Sequence
EFDWQDPLVLEEQLTTDEILIRDTFRTYCQERLMPRILLANRNEVFHREIISEMGELGVLGPTIKGYGCAGVSSVAYGLLARELERVDSGYRSAMSVQSSLVMHPIYAYGSEEQRQKYLPQLAKGELLGCFGLTEPNSGSDPSSMETRAHYNSSNKSYTLNGTKTWITNSPMADLFVVWARCEDGCIRGFLLEKGMRGLSAPRIQGKFSLRASATGMIIMDGVEVPEENVLPGASSLGGPFGCLNNARYGIAWGVLGASEFCLHTARQYALDRMQFGVPLARNQLIQKKLADMLTEITLGLHACLQLGRLKDQDKAAPEMVSLLKRNNCGKALDIARQARDMLGGNGISDEYHVIRHAMNLEAVNTYEGTHDIHALILGRAITGIQAFTA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
publication title Crystal Structures of Human Glutaryl-CoA Dehydrogenase with and without an Alternate Substrate: Structural Bases of Dehydrogenation and Decarboxylation Reactions
pubmed doi rcsb
molecule keywords Glutaryl-CoA dehydrogenase
total genus 151
structure length 390
sequence length 390
ec nomenclature ec 1.3.8.6: Glutaryl-CoA dehydrogenase (ETF).
pdb deposition date 2004-03-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00441 Acyl-CoA_dh_1 Acyl-CoA dehydrogenase, C-terminal domain
A PF02770 Acyl-CoA_dh_M Acyl-CoA dehydrogenase, middle domain
A PF02771 Acyl-CoA_dh_N Acyl-CoA dehydrogenase, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.540.10 Mainly Alpha Orthogonal Bundle Butyryl-Coa Dehydrogenase, subunit A; domain 1 Acyl-CoA dehydrogenase/oxidase, N-terminal domain 1siqA01
1.20.140.10 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A; domain 3 Butyryl-CoA Dehydrogenase, subunit A, domain 3 1siqA03
2.40.110.10 Mainly Beta Beta Barrel Butyryl-CoA Dehydrogenase, subunit A; domain 2 Butyryl-CoA Dehydrogenase, subunit A, domain 2 1siqA02
1IVHA 2WBIA 2YYMA 3MMOA 1OAHA 1RX0A 3GNCA 3D1IA 4X28C 3GM6A 2C0UA 1U8VA 2IX6A 3D6BA 3AFEA 2RF7A 2OT4A 2YYGA 4KTOA 3AFFA 2YYIA 3RKHA 3D9FA 1QDBA 1SIRA 2YYJA 2OR0A 3GQTA 3OWMA 3L1TA 3BNGA 4L3YA 5K3HA 3SCEA 3D9DA 4Q5BA 4P13A 3UBRA 3MXLA 3EOMA 2RDZA 5K3IA 3M9VA 5K3JA 4Q17A 4IRNA 3TTBA 4M9AA 4W9UA 2VIGA 1W07A 3MKHA 2REHA 3X0YA 4DOYA 3D9EA 4NXLA 2YYKA 2JBTA 3MDDA 2R0NA 3NF4A 3LG1A 4Q1OA 1EGCA 3BNJA 3SWOA 1EGDA 3MDEA 2PG0A 2ZAFA 1FS7A 3MPIA 4HR3A 2DVLA 2RFQA 2C12A 3FCJA 2J7AA 2JBSA 2UXWA 1BUCA 2Z1QA 4ZXVA 3UU9A 4Q5CA 5K3GA 4JEKA 4L3ZA 2A1TA 3X0XA 3BNHA 1WS9A 4XVXA 1FS9A 4OO2A 4KCFA 2DDHA 2IX5A 2VR0A 4O5MA 3SF6A 4L3XA 3R7KA 2CX9A 2R0MA 1UKWA 4Q0TA 1T9GA 4WJYA 4L38A 1FS8A 2JBRA 2FONA 3OWAA 4X28A 4IV6A 3D9GA 2EBAA 3FO3A 2E81A 1UDYA 4Q4UA 3S7WA 3P4TA 3F29A 2JIFA 3LGQA 4RM7A 3SXQA 1JQIA 3B96A 3PFDA 1R2JA 2ZO5A 3BNFA 1IS2A 1SIQA 2D29A 4ZYJA 1EGEA 2YYLA 1GU6A 4L1FA 3II9A 4U83A 2E80A 4N5FA 3OIBA 3HWCA 4G5EA 3TORA 3EONA 3MPJA
chains in the Genus database with same CATH superfamily
1IVHA 4MP7A 1RJ4A 2WBIA 2FP2A 2YYMA 5BRKA 3MMOA 3VKHA 1OAHA 1RX0A 2Q8GA 3GNCA 5J71A 2YGWA 3D1IA 5EZ3A 4X28C 2EBFX 3GM6A 2C0UA 1SK6A 1U8VA 2IX6A 3D6BA 3AFEA 2EBHX 2RF7A 4KSAA 2OT4A 5J6AA 2YYGA 4KTOA 3AFFA 4FF1A 4FF4A 2YYIA 3RKHA 5M4KA 4H81A 3D9FA 4FF2A 4E01A 1QDBA 1SIRA 4KS9A 2YYJA 2CJ5A 4E02A 2OR0A 3GQTA 1XFUA 3OWMA 3L1TA 3D2RA 3BNGA 2QR4A 2R02A 4L3YA 3Q22A 5GJVE 5K3HA 3SCEA 3CE2A 3N0RA 1JM6A 3D9DA 2BU7A 4Q5BA 4P13A 4KSFA 3UBRA 3MXLA 3EOMA 4AKIA 4HKRA 1XFZA 2RDZA 4H85A 5K3IA 3M9VA 5K3JA 2XS8A 4P79A 4Q17A 3X29A 4FZ4A 4IRNA 3TTBA 3TZ2A 4M9AA 4W9UA 4FF3A 2VIGA 2BU2A 1Y0VA 1W07A 3MKHA 2REHA 1XFYA 3TZ4A 3X0YA 4DOYA 1GKZA 2GBBA 1Y8OA 2CJ7A 3D9EA 1X90A 4NXLA 2XS1A 1PK0A 5M4MA 2R05A 3Q24A 2YYKA 4JIZA 2JBTA 3MDDA 2R0NA 3NF4A 3LG1A 1X8ZA 3CRKA 4Q1OA 1XFVA 1EGCA 2Q8FA 1LVCA 3BNJA 5GJWE 3SWOA 4MP2A 5M4PA 1XFWA 3U33A 1K8TA 1K90A 1Y8NA 1EGDA 3MDEA 2PG0A 2ZAFA 1FS7A 2FP1A 4G97A 2AZEA 2VF1A 3MPIA 4HR3A 2CJ8A 2F6LA 5B6BA 2DVLA 2RFQA 2C12A 1R3BA 4F0XA 5B5WA 3FCJA 2J7AA 2JBSA 4H7QA 2UXWA 1BUCA 2Z1QA 4ZXVA 4V25A 4Q5CA 3UU9A 2OJQA 1RP3A 1Y8PA 3KMLA 4AKHA 5K3GA 4JEKA 4L3ZA 2A1TA 3X0XA 3BNHA 1WS9A 4XVXA 1FS9A 4HKSA 3CRLA 4OO2A 4KCFA 2DDHA 2OEXA 3C46A 4LQQB 2IX5A 2VR0A 4O5MA 3SF6A 4L3XA 1XG2B 3R7KA 3C3LA 1PI1A 3VADA 2CX9A 2ZDYA 2R0MA 1UKWA 2CJ4A 4MPCA 4MPEA 4Q0TA 3TZ5A 1T9GA 3TZ0A 5M4NA 4WJYA 2Q8HA 4L38A 1FS8A 2Q8IA 3Q0AA 4LQSB 2JBRA 1X91A 2FONA 3OWAA 4X28A 4AKGA 3VKGA 2XQRB 4J1VA 5BRMA 4IV6A 3D9GA 2PO4A 3DJLA 2EBAA 3FO3A 5B5VA 2BU6A 4AI6A 2ZDXA 2E81A 1UDYA 1S26A 4Q4UA 3S7WA 1SC5A 1XFXA 3P4TA 2ZKJA 1RJ1A 3F29A 2JIFA 3LGQA 4RM7A 3SXQA 2BU5A 1JQIA 3B96A 4JIOA 3PFDA 1R2JA 4E00A 2ZO5A 3BNFA 4MPNA 2R03A 1IS2A 1SIQA 2LFWA 4DZYA 1GJVA 2D29A 2HJNA 1K93A 4ZYJA 1EGEA 2YYLA 1GU6A 4L1FA 2AO2A 2CJ6A 4V26A 2PNRA 3Q23A 3II9A 4U83A 2E80A 2EC5A 4QICA 4N5FA 3OIBA 3HWCA 4G5EA 3TORA 2OEVA 3EONA 1GKXA 3C2PA 2E0AA 2BTZA 2BU8A 3MPJA
chains in the Genus database with same CATH topology
1IVHA 2WBIA 2YYMA 3MMOA 1OAHA 1RX0A 3GNCA 3D1IA 4X28C 3GM6A 2C0UA 1U8VA 2IX6A 3D6BA 3AFEA 2RF7A 2OT4A 2YYGA 4KTOA 3AFFA 2YYIA 3RKHA 3D9FA 1QDBA 1SIRA 2YYJA 2OR0A 3GQTA 3OWMA 3L1TA 3BNGA 4L3YA 5K3HA 3SCEA 3D9DA 4Q5BA 4P13A 3UBRA 3MXLA 3EOMA 2RDZA 5K3IA 3M9VA 5K3JA 4Q17A 4IRNA 3TTBA 4M9AA 4W9UA 2VIGA 1W07A 3MKHA 2REHA 3X0YA 4DOYA 3D9EA 4NXLA 2YYKA 2JBTA 3MDDA 2R0NA 3NF4A 3LG1A 4Q1OA 1EGCA 3BNJA 3SWOA 1EGDA 3MDEA 2PG0A 2ZAFA 1FS7A 3MPIA 4HR3A 2DVLA 2RFQA 2C12A 3FCJA 2J7AA 2JBSA 2UXWA 1BUCA 2Z1QA 4ZXVA 3UU9A 4Q5CA 5K3GA 4JEKA 4L3ZA 2A1TA 3X0XA 3BNHA 1WS9A 4XVXA 1FS9A 4OO2A 4KCFA 2DDHA 2IX5A 2VR0A 4O5MA 3SF6A 4L3XA 3R7KA 2CX9A 2R0MA 1UKWA 4Q0TA 1T9GA 4WJYA 4L38A 1FS8A 2JBRA 2FONA 3OWAA 4X28A 4IV6A 3D9GA 2EBAA 3FO3A 2E81A 1UDYA 4Q4UA 3S7WA 3P4TA 3F29A 2JIFA 3LGQA 4RM7A 3SXQA 1JQIA 3B96A 3PFDA 1R2JA 2ZO5A 3BNFA 1IS2A 1SIQA 2D29A 4ZYJA 1EGEA 2YYLA 1GU6A 4L1FA 3II9A 4U83A 2E80A 4N5FA 3OIBA 3HWCA 4G5EA 3TORA 3EONA 3MPJA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1IVH A;  2WBI A;  2YYM A;  3MMO A;  1OAH A;  1RX0 A;  3GNC A;  3D1I A;  4X28 C;  3GM6 A;  2C0U A;  1U8V A;  2IX6 A;  3D6B A;  3AFE A;  2RF7 A;  2OT4 A;  2YYG A;  4KTO A;  3AFF A;  2YYI A;  3RKH A;  3D9F A;  1QDB A;  1SIR A;  2YYJ A;  2OR0 A;  3GQT A;  3OWM A;  3L1T A;  3BNG A;  4L3Y A;  5K3H A;  3SCE A;  3D9D A;  4Q5B A;  4P13 A;  3UBR A;  3MXL A;  3EOM A;  2RDZ A;  5K3I A;  3M9V A;  5K3J A;  4Q17 A;  4IRN A;  3TTB A;  4M9A A;  4W9U A;  2VIG A;  1W07 A;  3MKH A;  2REH A;  3X0Y A;  4DOY A;  3D9E A;  4NXL A;  2YYK A;  2JBT A;  3MDD A;  2R0N A;  3NF4 A;  3LG1 A;  4Q1O A;  1EGC A;  3BNJ A;  3SWO A;  1EGD A;  3MDE A;  2PG0 A;  2ZAF A;  1FS7 A;  3MPI A;  4HR3 A;  2DVL A;  2RFQ A;  2C12 A;  3FCJ A;  2J7A A;  2JBS A;  2UXW A;  1BUC A;  2Z1Q A;  4ZXV A;  3UU9 A;  4Q5C A;  5K3G A;  4JEK A;  4L3Z A;  2A1T A;  3X0X A;  3BNH A;  1WS9 A;  4XVX A;  1FS9 A;  4OO2 A;  4KCF A;  2DDH A;  2IX5 A;  2VR0 A;  4O5M A;  3SF6 A;  4L3X A;  3R7K A;  2CX9 A;  2R0M A;  1UKW A;  4Q0T A;  1T9G A;  4WJY A;  4L38 A;  1FS8 A;  2JBR A;  2FON A;  3OWA A;  4X28 A;  4IV6 A;  3D9G A;  2EBA A;  3FO3 A;  2E81 A;  1UDY A;  4Q4U A;  3S7W A;  3P4T A;  3F29 A;  2JIF A;  3LGQ A;  4RM7 A;  3SXQ A;  1JQI A;  3B96 A;  3PFD A;  1R2J A;  2ZO5 A;  3BNF A;  1IS2 A;  1SIQ A;  2D29 A;  4ZYJ A;  1EGE A;  2YYL A;  1GU6 A;  4L1F A;  3II9 A;  4U83 A;  2E80 A;  4N5F A;  3OIB A;  3HWC A;  4G5E A;  3TOR A;  3EON A;  3MPJ A; 
#chains in the Genus database with same CATH topology
 1IVH A;  4MP7 A;  1RJ4 A;  2WBI A;  2FP2 A;  2YYM A;  5BRK A;  3MMO A;  3VKH A;  1OAH A;  1RX0 A;  2Q8G A;  3GNC A;  5J71 A;  2YGW A;  3D1I A;  5EZ3 A;  4X28 C;  2EBF X;  3GM6 A;  2C0U A;  1SK6 A;  1U8V A;  2IX6 A;  3D6B A;  3AFE A;  2EBH X;  2RF7 A;  4KSA A;  2OT4 A;  5J6A A;  2YYG A;  4KTO A;  3AFF A;  4FF1 A;  4FF4 A;  2YYI A;  3RKH A;  5M4K A;  4H81 A;  3D9F A;  4FF2 A;  4E01 A;  1QDB A;  1SIR A;  4KS9 A;  2YYJ A;  2CJ5 A;  4E02 A;  2OR0 A;  3GQT A;  1XFU A;  3OWM A;  3L1T A;  3D2R A;  3BNG A;  2QR4 A;  2R02 A;  4L3Y A;  3Q22 A;  5GJV E;  5K3H A;  3SCE A;  3CE2 A;  3N0R A;  1JM6 A;  3D9D A;  2BU7 A;  4Q5B A;  4P13 A;  4KSF A;  3UBR A;  3MXL A;  3EOM A;  4AKI A;  4HKR A;  1XFZ A;  2RDZ A;  4H85 A;  5K3I A;  3M9V A;  5K3J A;  2XS8 A;  4P79 A;  4Q17 A;  3X29 A;  4FZ4 A;  4IRN A;  3TTB A;  3TZ2 A;  4M9A A;  4W9U A;  4FF3 A;  2VIG A;  2BU2 A;  1Y0V A;  1W07 A;  3MKH A;  2REH A;  1XFY A;  3TZ4 A;  3X0Y A;  4DOY A;  1GKZ A;  2GBB A;  1Y8O A;  2CJ7 A;  3D9E A;  1X90 A;  4NXL A;  2XS1 A;  1PK0 A;  5M4M A;  2R05 A;  3Q24 A;  2YYK A;  4JIZ A;  2JBT A;  3MDD A;  2R0N A;  3NF4 A;  3LG1 A;  1X8Z A;  3CRK A;  4Q1O A;  1XFV A;  1EGC A;  2Q8F A;  1LVC A;  3BNJ A;  5GJW E;  3SWO A;  4MP2 A;  5M4P A;  1XFW A;  3U33 A;  1K8T A;  1K90 A;  1Y8N A;  1EGD A;  3MDE A;  2PG0 A;  2ZAF A;  1FS7 A;  2FP1 A;  4G97 A;  2AZE A;  2VF1 A;  3MPI A;  4HR3 A;  2CJ8 A;  2F6L A;  5B6B A;  2DVL A;  2RFQ A;  2C12 A;  1R3B A;  4F0X A;  5B5W A;  3FCJ A;  2J7A A;  2JBS A;  4H7Q A;  2UXW A;  1BUC A;  2Z1Q A;  4ZXV A;  4V25 A;  4Q5C A;  3UU9 A;  2OJQ A;  1RP3 A;  1Y8P A;  3KML A;  4AKH A;  5K3G A;  4JEK A;  4L3Z A;  2A1T A;  3X0X A;  3BNH A;  1WS9 A;  4XVX A;  1FS9 A;  4HKS A;  3CRL A;  4OO2 A;  4KCF A;  2DDH A;  2OEX A;  3C46 A;  4LQQ B;  2IX5 A;  2VR0 A;  4O5M A;  3SF6 A;  4L3X A;  1XG2 B;  3R7K A;  3C3L A;  1PI1 A;  3VAD A;  2CX9 A;  2ZDY A;  2R0M A;  1UKW A;  2CJ4 A;  4MPC A;  4MPE A;  4Q0T A;  3TZ5 A;  1T9G A;  3TZ0 A;  5M4N A;  4WJY A;  2Q8H A;  4L38 A;  1FS8 A;  2Q8I A;  3Q0A A;  4LQS B;  2JBR A;  1X91 A;  2FON A;  3OWA A;  4X28 A;  4AKG A;  3VKG A;  2XQR B;  4J1V A;  5BRM A;  4IV6 A;  3D9G A;  2PO4 A;  3DJL A;  2EBA A;  3FO3 A;  5B5V A;  2BU6 A;  4AI6 A;  2ZDX A;  2E81 A;  1UDY A;  1S26 A;  4Q4U A;  3S7W A;  1SC5 A;  1XFX A;  3P4T A;  2ZKJ A;  1RJ1 A;  3F29 A;  2JIF A;  3LGQ A;  4RM7 A;  3SXQ A;  2BU5 A;  1JQI A;  3B96 A;  4JIO A;  3PFD A;  1R2J A;  4E00 A;  2ZO5 A;  3BNF A;  4MPN A;  2R03 A;  1IS2 A;  1SIQ A;  2LFW A;  4DZY A;  1GJV A;  2D29 A;  2HJN A;  1K93 A;  4ZYJ A;  1EGE A;  2YYL A;  1GU6 A;  4L1F A;  2AO2 A;  2CJ6 A;  4V26 A;  2PNR A;  3Q23 A;  3II9 A;  4U83 A;  2E80 A;  2EC5 A;  4QIC A;  4N5F A;  3OIB A;  3HWC A;  4G5E A;  3TOR A;  2OEV A;  3EON A;  1GKX A;  3C2P A;  2E0A A;  2BTZ A;  2BU8 A;  3MPJ A; 
#chains in the Genus database with same CATH homology
 1IVH A;  2WBI A;  2YYM A;  3MMO A;  1OAH A;  1RX0 A;  3GNC A;  3D1I A;  4X28 C;  3GM6 A;  2C0U A;  1U8V A;  2IX6 A;  3D6B A;  3AFE A;  2RF7 A;  2OT4 A;  2YYG A;  4KTO A;  3AFF A;  2YYI A;  3RKH A;  3D9F A;  1QDB A;  1SIR A;  2YYJ A;  2OR0 A;  3GQT A;  3OWM A;  3L1T A;  3BNG A;  4L3Y A;  5K3H A;  3SCE A;  3D9D A;  4Q5B A;  4P13 A;  3UBR A;  3MXL A;  3EOM A;  2RDZ A;  5K3I A;  3M9V A;  5K3J A;  4Q17 A;  4IRN A;  3TTB A;  4M9A A;  4W9U A;  2VIG A;  1W07 A;  3MKH A;  2REH A;  3X0Y A;  4DOY A;  3D9E A;  4NXL A;  2YYK A;  2JBT A;  3MDD A;  2R0N A;  3NF4 A;  3LG1 A;  4Q1O A;  1EGC A;  3BNJ A;  3SWO A;  1EGD A;  3MDE A;  2PG0 A;  2ZAF A;  1FS7 A;  3MPI A;  4HR3 A;  2DVL A;  2RFQ A;  2C12 A;  3FCJ A;  2J7A A;  2JBS A;  2UXW A;  1BUC A;  2Z1Q A;  4ZXV A;  3UU9 A;  4Q5C A;  5K3G A;  4JEK A;  4L3Z A;  2A1T A;  3X0X A;  3BNH A;  1WS9 A;  4XVX A;  1FS9 A;  4OO2 A;  4KCF A;  2DDH A;  2IX5 A;  2VR0 A;  4O5M A;  3SF6 A;  4L3X A;  3R7K A;  2CX9 A;  2R0M A;  1UKW A;  4Q0T A;  1T9G A;  4WJY A;  4L38 A;  1FS8 A;  2JBR A;  2FON A;  3OWA A;  4X28 A;  4IV6 A;  3D9G A;  2EBA A;  3FO3 A;  2E81 A;  1UDY A;  4Q4U A;  3S7W A;  3P4T A;  3F29 A;  2JIF A;  3LGQ A;  4RM7 A;  3SXQ A;  1JQI A;  3B96 A;  3PFD A;  1R2J A;  2ZO5 A;  3BNF A;  1IS2 A;  1SIQ A;  2D29 A;  4ZYJ A;  1EGE A;  2YYL A;  1GU6 A;  4L1F A;  3II9 A;  4U83 A;  2E80 A;  4N5F A;  3OIB A;  3HWC A;  4G5E A;  3TOR A;  3EON A;  3MPJ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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