1SIQA

The crystal structure and mechanism of human glutaryl-coa dehydrogenase
Total Genus 151
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
151
sequence length
390
structure length
390
Chain Sequence
EFDWQDPLVLEEQLTTDEILIRDTFRTYCQERLMPRILLANRNEVFHREIISEMGELGVLGPTIKGYGCAGVSSVAYGLLARELERVDSGYRSAMSVQSSLVMHPIYAYGSEEQRQKYLPQLAKGELLGCFGLTEPNSGSDPSSMETRAHYNSSNKSYTLNGTKTWITNSPMADLFVVWARCEDGCIRGFLLEKGMRGLSAPRIQGKFSLRASATGMIIMDGVEVPEENVLPGASSLGGPFGCLNNARYGIAWGVLGASEFCLHTARQYALDRMQFGVPLARNQLIQKKLADMLTEITLGLHACLQLGRLKDQDKAAPEMVSLLKRNNCGKALDIARQARDMLGGNGISDEYHVIRHAMNLEAVNTYEGTHDIHALILGRAITGIQAFTA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Glutaryl-CoA dehydrogenase
publication title Crystal Structures of Human Glutaryl-CoA Dehydrogenase with and without an Alternate Substrate: Structural Bases of Dehydrogenation and Decarboxylation Reactions
pubmed doi rcsb
molecule tags Oxidoreductase
total genus 151
structure length 390
sequence length 390
ec nomenclature ec 1.3.8.6: Glutaryl-CoA dehydrogenase (ETF).
pdb deposition date 2004-03-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00441 Acyl-CoA_dh_1 Acyl-CoA dehydrogenase, C-terminal domain
A PF02770 Acyl-CoA_dh_M Acyl-CoA dehydrogenase, middle domain
A PF02771 Acyl-CoA_dh_N Acyl-CoA dehydrogenase, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.540.10 Mainly Alpha Orthogonal Bundle Butyryl-Coa Dehydrogenase, subunit A; domain 1 Acyl-CoA dehydrogenase/oxidase, N-terminal domain 1siqA01
1.20.140.10 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A; domain 3 Butyryl-CoA Dehydrogenase, subunit A, domain 3 1siqA03
2.40.110.10 Mainly Beta Beta Barrel Butyryl-CoA Dehydrogenase, subunit A; domain 2 Butyryl-CoA Dehydrogenase, subunit A, domain 2 1siqA02
3GM6A 4IRNA 4N5FA 4L3YA 2OT4A 3MKHA 1SIQA 2CX9A 3SWOA 3SCEA 1JQIA 1QDBA 1EGEA 2UXWA 3D9FA 2RF7A 3MPJA 2ZO5A 4OO2A 2FONA 3UBRA 2JBTA 1RX0A 3D9EA 4P13A 3OWMA 2R0MA 3II9A 3AFFA 2JBSA 4IV6A 3X0XA 5K3IA 2VR0A 4NXLA 4HR3A 2DVLA 4L38A 3LGQA 4M9AA 4U83A 5K3HA 3X0YA 3MPIA 2E80A 2J7AA 4KCFA 3NF4A 2PG0A 3R7KA 3MDDA 4X28C 4Q5CA 4O5MA 2YYMA 4L3XA 2A1TA 4Q0TA 3OIBA 2C0UA 2ZAFA 2WBIA 2RDZA 1T9GA 3FCJA 1UDYA 4WJYA 3TORA 2E81A 4Q5BA 3BNHA 3RKHA 3D9DA 4Q1OA 3PFDA 4DOYA 2DDHA 3GQTA 1SIRA 3B96A 4KTOA 3MXLA 1IVHA 3D9GA 4Q17A 4ZXVA 2YYGA 1FS8A 3L1TA 1FS7A 3D1IA 4L1FA 4Q4UA 2RFQA 3D6BA 3EOMA 1U8VA 1W07A 3BNJA 2IX6A 3SXQA 2YYIA 2D29A 5K3JA 1WS9A 2REHA 2YYJA 3TTBA 3S7WA 3BNGA 1EGDA 3GNCA 1OAHA 2OR0A 3HWCA 1BUCA 2YYLA 1R2JA 3P4TA 1IS2A 4X28A 3FO3A 3MDEA 1FS9A 2YYKA 1GU6A 3LG1A 4XVXA 1UKWA 2Z1QA 2EBAA 3SF6A 3BNFA 3EONA 4JEKA 3M9VA 5K3GA 4G5EA 3UU9A 3MMOA 2R0NA 2IX5A 4RM7A 4L3ZA 3OWAA 2JIFA 2C12A 3F29A 1EGCA 2JBRA 4W9UA 3AFEA 4ZYJA 2VIGA
chains in the Genus database with same CATH superfamily
3GM6A 4IRNA 2QR4A 2CJ7A 4N5FA 1XFZA 4L3YA 3N0RA 2OT4A 3KMLA 4V26A 4FZ4A 3MKHA 1GKXA 4MPCA 1SIQA 2CX9A 2Q8GA 2BU2A 3C46A 4E00A 3SWOA 3SCEA 1JQIA 1QDBA 1EGEA 2CJ6A 2UXWA 3D9FA 1XFXA 2RF7A 3MPJA 3TZ2A 2ZO5A 4OO2A 1X8ZA 4JIZA 3U33A 2FONA 3UBRA 2JBTA 1RX0A 3D9EA 4P13A 3CRLA 3OWMA 2R0MA 3II9A 3X29A 3AFFA 4E01A 2JBSA 4IV6A 3X0XA 5K3IA 2VR0A 4NXLA 5M4NA 4FF2A 4HR3A 2BU7A 2DVLA 4L38A 1RJ4A 2R05A 3LGQA 4H81A 4M9AA 4U83A 2LFWA 4MP2A 5K3HA 3X0YA 3CRKA 3TZ4A 1PI1A 3MPIA 1XFYA 2E80A 2J7AA 4F0XA 1SC5A 4KCFA 2XS1A 3NF4A 2PG0A 2Q8FA 3Q24A 3R7KA 4P79A 1GJVA 3VADA 4QICA 5M4MA 3MDDA 4X28C 3Q0AA 4Q5CA 1RP3A 3C3LA 4O5MA 2YYMA 4L3XA 2A1TA 4Q0TA 3OIBA 4FF4A 1Y8PA 2YGWA 2C0UA 2ZAFA 2ZKJA 2WBIA 2RDZA 1T9GA 3CE2A 3FCJA 4LQSB 1UDYA 2FP2A 4KSFA 2R02A 3D2RA 4WJYA 2FP1A 2BU5A 3TZ0A 2BTZA 3TORA 5M4PA 2E81A 2CJ5A 4Q5BA 4FF3A 3BNHA 5B6BA 3RKHA 3D9DA 4Q1OA 4J1VA 3PFDA 2HJNA 5GJVE 2XS8A 4DOYA 5GJWE 2DDHA 1XFVA 1Y0VA 2BU8A 5B5WA 3GQTA 1SIRA 3B96A 1LVCA 2AZEA 4KSAA 4KTOA 2BU6A 3MXLA 1IVHA 3D9GA 4LQQB 4Q17A 5BRMA 4ZXVA 2YYGA 2EBHX 1FS8A 3L1TA 5B5VA 4AKHA 4V25A 4AKGA 1FS7A 3D1IA 4L1FA 4Q4UA 1Y8NA 3VKHA 2RFQA 3D6BA 3EOMA 1U8VA 1W07A 2PO4A 3BNJA 2IX6A 1Y8OA 3SXQA 3DJLA 1PK0A 2YYIA 4E02A 3Q23A 2D29A 5K3JA 2ZDXA 1WS9A 2REHA 3TZ5A 2EC5A 2CJ4A 2YYJA 5EZ3A 3TTBA 2GBBA 3S7WA 3BNGA 1EGDA 3GNCA 1OAHA 4HKSA 2OR0A 2ZDYA 3HWCA 2Q8HA 1BUCA 2YYLA 4G97A 1R2JA 3P4TA 2E0AA 1X90A 1X91A 4H7QA 1IS2A 4X28A 4KS9A 5M4KA 3FO3A 2Q8IA 4AKIA 1SK6A 1R3BA 4MPNA 3C2PA 3MDEA 1FS9A 2YYKA 2AO2A 1GU6A 3LG1A 4DZYA 4XVXA 5J71A 1UKWA 2Z1QA 2EBAA 3SF6A 3BNFA 4AI6A 2OJQA 1K8TA 1JM6A 3EONA 4JEKA 3M9VA 2OEVA 2XQRB 5K3GA 4FF1A 4JIOA 5BRKA 2OEXA 4G5EA 3UU9A 3MMOA 2PNRA 1K90A 2R0NA 2F6LA 2IX5A 4RM7A 4L3ZA 3OWAA 1XFWA 1XG2B 1S26A 4MPEA 2JIFA 2C12A 1GKZA 4HKRA 2CJ8A 2VF1A 3F29A 1EGCA 2JBRA 3VKGA 4W9UA 3AFEA 1K93A 4ZYJA 1RJ1A 1XFUA 2EBFX 2R03A 4H85A 3Q22A 5J6AA 2VIGA 4MP7A
chains in the Genus database with same CATH topology
3GM6A 4IRNA 4N5FA 4L3YA 2OT4A 3MKHA 1SIQA 2CX9A 3SWOA 3SCEA 1JQIA 1QDBA 1EGEA 2UXWA 3D9FA 2RF7A 3MPJA 2ZO5A 4OO2A 2FONA 3UBRA 2JBTA 1RX0A 3D9EA 4P13A 3OWMA 2R0MA 3II9A 3AFFA 2JBSA 4IV6A 3X0XA 5K3IA 2VR0A 4NXLA 4HR3A 2DVLA 4L38A 3LGQA 4M9AA 4U83A 5K3HA 3X0YA 3MPIA 2E80A 2J7AA 4KCFA 3NF4A 2PG0A 3R7KA 3MDDA 4X28C 4Q5CA 4O5MA 2YYMA 4L3XA 2A1TA 4Q0TA 3OIBA 2C0UA 2ZAFA 2WBIA 2RDZA 1T9GA 3FCJA 1UDYA 4WJYA 3TORA 2E81A 4Q5BA 3BNHA 3RKHA 3D9DA 4Q1OA 3PFDA 4DOYA 2DDHA 3GQTA 1SIRA 3B96A 4KTOA 3MXLA 1IVHA 3D9GA 4Q17A 4ZXVA 2YYGA 1FS8A 3L1TA 1FS7A 3D1IA 4L1FA 4Q4UA 2RFQA 3D6BA 3EOMA 1U8VA 1W07A 3BNJA 2IX6A 3SXQA 2YYIA 2D29A 5K3JA 1WS9A 2REHA 2YYJA 3TTBA 3S7WA 3BNGA 1EGDA 3GNCA 1OAHA 2OR0A 3HWCA 1BUCA 2YYLA 1R2JA 3P4TA 1IS2A 4X28A 3FO3A 3MDEA 1FS9A 2YYKA 1GU6A 3LG1A 4XVXA 1UKWA 2Z1QA 2EBAA 3SF6A 3BNFA 3EONA 4JEKA 3M9VA 5K3GA 4G5EA 3UU9A 3MMOA 2R0NA 2IX5A 4RM7A 4L3ZA 3OWAA 2JIFA 2C12A 3F29A 1EGCA 2JBRA 4W9UA 3AFEA 4ZYJA 2VIGA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3GM6 A;  4IRN A;  4N5F A;  4L3Y A;  2OT4 A;  3MKH A;  1SIQ A;  2CX9 A;  3SWO A;  3SCE A;  1JQI A;  1QDB A;  1EGE A;  2UXW A;  3D9F A;  2RF7 A;  3MPJ A;  2ZO5 A;  4OO2 A;  2FON A;  3UBR A;  2JBT A;  1RX0 A;  3D9E A;  4P13 A;  3OWM A;  2R0M A;  3II9 A;  3AFF A;  2JBS A;  4IV6 A;  3X0X A;  5K3I A;  2VR0 A;  4NXL A;  4HR3 A;  2DVL A;  4L38 A;  3LGQ A;  4M9A A;  4U83 A;  5K3H A;  3X0Y A;  3MPI A;  2E80 A;  2J7A A;  4KCF A;  3NF4 A;  2PG0 A;  3R7K A;  3MDD A;  4X28 C;  4Q5C A;  4O5M A;  2YYM A;  4L3X A;  2A1T A;  4Q0T A;  3OIB A;  2C0U A;  2ZAF A;  2WBI A;  2RDZ A;  1T9G A;  3FCJ A;  1UDY A;  4WJY A;  3TOR A;  2E81 A;  4Q5B A;  3BNH A;  3RKH A;  3D9D A;  4Q1O A;  3PFD A;  4DOY A;  2DDH A;  3GQT A;  1SIR A;  3B96 A;  4KTO A;  3MXL A;  1IVH A;  3D9G A;  4Q17 A;  4ZXV A;  2YYG A;  1FS8 A;  3L1T A;  1FS7 A;  3D1I A;  4L1F A;  4Q4U A;  2RFQ A;  3D6B A;  3EOM A;  1U8V A;  1W07 A;  3BNJ A;  2IX6 A;  3SXQ A;  2YYI A;  2D29 A;  5K3J A;  1WS9 A;  2REH A;  2YYJ A;  3TTB A;  3S7W A;  3BNG A;  1EGD A;  3GNC A;  1OAH A;  2OR0 A;  3HWC A;  1BUC A;  2YYL A;  1R2J A;  3P4T A;  1IS2 A;  4X28 A;  3FO3 A;  3MDE A;  1FS9 A;  2YYK A;  1GU6 A;  3LG1 A;  4XVX A;  1UKW A;  2Z1Q A;  2EBA A;  3SF6 A;  3BNF A;  3EON A;  4JEK A;  3M9V A;  5K3G A;  4G5E A;  3UU9 A;  3MMO A;  2R0N A;  2IX5 A;  4RM7 A;  4L3Z A;  3OWA A;  2JIF A;  2C12 A;  3F29 A;  1EGC A;  2JBR A;  4W9U A;  3AFE A;  4ZYJ A;  2VIG A; 
#chains in the Genus database with same CATH topology
 3GM6 A;  4IRN A;  2QR4 A;  2CJ7 A;  4N5F A;  1XFZ A;  4L3Y A;  3N0R A;  2OT4 A;  3KML A;  4V26 A;  4FZ4 A;  3MKH A;  1GKX A;  4MPC A;  1SIQ A;  2CX9 A;  2Q8G A;  2BU2 A;  3C46 A;  4E00 A;  3SWO A;  3SCE A;  1JQI A;  1QDB A;  1EGE A;  2CJ6 A;  2UXW A;  3D9F A;  1XFX A;  2RF7 A;  3MPJ A;  3TZ2 A;  2ZO5 A;  4OO2 A;  1X8Z A;  4JIZ A;  3U33 A;  2FON A;  3UBR A;  2JBT A;  1RX0 A;  3D9E A;  4P13 A;  3CRL A;  3OWM A;  2R0M A;  3II9 A;  3X29 A;  3AFF A;  4E01 A;  2JBS A;  4IV6 A;  3X0X A;  5K3I A;  2VR0 A;  4NXL A;  5M4N A;  4FF2 A;  4HR3 A;  2BU7 A;  2DVL A;  4L38 A;  1RJ4 A;  2R05 A;  3LGQ A;  4H81 A;  4M9A A;  4U83 A;  2LFW A;  4MP2 A;  5K3H A;  3X0Y A;  3CRK A;  3TZ4 A;  1PI1 A;  3MPI A;  1XFY A;  2E80 A;  2J7A A;  4F0X A;  1SC5 A;  4KCF A;  2XS1 A;  3NF4 A;  2PG0 A;  2Q8F A;  3Q24 A;  3R7K A;  4P79 A;  1GJV A;  3VAD A;  4QIC A;  5M4M A;  3MDD A;  4X28 C;  3Q0A A;  4Q5C A;  1RP3 A;  3C3L A;  4O5M A;  2YYM A;  4L3X A;  2A1T A;  4Q0T A;  3OIB A;  4FF4 A;  1Y8P A;  2YGW A;  2C0U A;  2ZAF A;  2ZKJ A;  2WBI A;  2RDZ A;  1T9G A;  3CE2 A;  3FCJ A;  4LQS B;  1UDY A;  2FP2 A;  4KSF A;  2R02 A;  3D2R A;  4WJY A;  2FP1 A;  2BU5 A;  3TZ0 A;  2BTZ A;  3TOR A;  5M4P A;  2E81 A;  2CJ5 A;  4Q5B A;  4FF3 A;  3BNH A;  5B6B A;  3RKH A;  3D9D A;  4Q1O A;  4J1V A;  3PFD A;  2HJN A;  5GJV E;  2XS8 A;  4DOY A;  5GJW E;  2DDH A;  1XFV A;  1Y0V A;  2BU8 A;  5B5W A;  3GQT A;  1SIR A;  3B96 A;  1LVC A;  2AZE A;  4KSA A;  4KTO A;  2BU6 A;  3MXL A;  1IVH A;  3D9G A;  4LQQ B;  4Q17 A;  5BRM A;  4ZXV A;  2YYG A;  2EBH X;  1FS8 A;  3L1T A;  5B5V A;  4AKH A;  4V25 A;  4AKG A;  1FS7 A;  3D1I A;  4L1F A;  4Q4U A;  1Y8N A;  3VKH A;  2RFQ A;  3D6B A;  3EOM A;  1U8V A;  1W07 A;  2PO4 A;  3BNJ A;  2IX6 A;  1Y8O A;  3SXQ A;  3DJL A;  1PK0 A;  2YYI A;  4E02 A;  3Q23 A;  2D29 A;  5K3J A;  2ZDX A;  1WS9 A;  2REH A;  3TZ5 A;  2EC5 A;  2CJ4 A;  2YYJ A;  5EZ3 A;  3TTB A;  2GBB A;  3S7W A;  3BNG A;  1EGD A;  3GNC A;  1OAH A;  4HKS A;  2OR0 A;  2ZDY A;  3HWC A;  2Q8H A;  1BUC A;  2YYL A;  4G97 A;  1R2J A;  3P4T A;  2E0A A;  1X90 A;  1X91 A;  4H7Q A;  1IS2 A;  4X28 A;  4KS9 A;  5M4K A;  3FO3 A;  2Q8I A;  4AKI A;  1SK6 A;  1R3B A;  4MPN A;  3C2P A;  3MDE A;  1FS9 A;  2YYK A;  2AO2 A;  1GU6 A;  3LG1 A;  4DZY A;  4XVX A;  5J71 A;  1UKW A;  2Z1Q A;  2EBA A;  3SF6 A;  3BNF A;  4AI6 A;  2OJQ A;  1K8T A;  1JM6 A;  3EON A;  4JEK A;  3M9V A;  2OEV A;  2XQR B;  5K3G A;  4FF1 A;  4JIO A;  5BRK A;  2OEX A;  4G5E A;  3UU9 A;  3MMO A;  2PNR A;  1K90 A;  2R0N A;  2F6L A;  2IX5 A;  4RM7 A;  4L3Z A;  3OWA A;  1XFW A;  1XG2 B;  1S26 A;  4MPE A;  2JIF A;  2C12 A;  1GKZ A;  4HKR A;  2CJ8 A;  2VF1 A;  3F29 A;  1EGC A;  2JBR A;  3VKG A;  4W9U A;  3AFE A;  1K93 A;  4ZYJ A;  1RJ1 A;  1XFU A;  2EBF X;  2R03 A;  4H85 A;  3Q22 A;  5J6A A;  2VIG A;  4MP7 A; 
#chains in the Genus database with same CATH homology
 3GM6 A;  4IRN A;  4N5F A;  4L3Y A;  2OT4 A;  3MKH A;  1SIQ A;  2CX9 A;  3SWO A;  3SCE A;  1JQI A;  1QDB A;  1EGE A;  2UXW A;  3D9F A;  2RF7 A;  3MPJ A;  2ZO5 A;  4OO2 A;  2FON A;  3UBR A;  2JBT A;  1RX0 A;  3D9E A;  4P13 A;  3OWM A;  2R0M A;  3II9 A;  3AFF A;  2JBS A;  4IV6 A;  3X0X A;  5K3I A;  2VR0 A;  4NXL A;  4HR3 A;  2DVL A;  4L38 A;  3LGQ A;  4M9A A;  4U83 A;  5K3H A;  3X0Y A;  3MPI A;  2E80 A;  2J7A A;  4KCF A;  3NF4 A;  2PG0 A;  3R7K A;  3MDD A;  4X28 C;  4Q5C A;  4O5M A;  2YYM A;  4L3X A;  2A1T A;  4Q0T A;  3OIB A;  2C0U A;  2ZAF A;  2WBI A;  2RDZ A;  1T9G A;  3FCJ A;  1UDY A;  4WJY A;  3TOR A;  2E81 A;  4Q5B A;  3BNH A;  3RKH A;  3D9D A;  4Q1O A;  3PFD A;  4DOY A;  2DDH A;  3GQT A;  1SIR A;  3B96 A;  4KTO A;  3MXL A;  1IVH A;  3D9G A;  4Q17 A;  4ZXV A;  2YYG A;  1FS8 A;  3L1T A;  1FS7 A;  3D1I A;  4L1F A;  4Q4U A;  2RFQ A;  3D6B A;  3EOM A;  1U8V A;  1W07 A;  3BNJ A;  2IX6 A;  3SXQ A;  2YYI A;  2D29 A;  5K3J A;  1WS9 A;  2REH A;  2YYJ A;  3TTB A;  3S7W A;  3BNG A;  1EGD A;  3GNC A;  1OAH A;  2OR0 A;  3HWC A;  1BUC A;  2YYL A;  1R2J A;  3P4T A;  1IS2 A;  4X28 A;  3FO3 A;  3MDE A;  1FS9 A;  2YYK A;  1GU6 A;  3LG1 A;  4XVX A;  1UKW A;  2Z1Q A;  2EBA A;  3SF6 A;  3BNF A;  3EON A;  4JEK A;  3M9V A;  5K3G A;  4G5E A;  3UU9 A;  3MMO A;  2R0N A;  2IX5 A;  4RM7 A;  4L3Z A;  3OWA A;  2JIF A;  2C12 A;  3F29 A;  1EGC A;  2JBR A;  4W9U A;  3AFE A;  4ZYJ A;  2VIG A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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