4JEKA

Structure of dibenzothiophene monooxygenase (dszc) from rhodococcus erythropolis
Total Genus 148
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
148
sequence length
399
structure length
399
Chain Sequence
b'DPVAVARGLAEKWRATAVERDRAGGSATAEREDLRASGLLSLLVPREYGGWGADWPTAIEVVREIAAADGSLGHLFGYHLTNAPMIELIGSQEQEEHLYTQIAQNNWWTGNASSENNSHVLDWKVSATPTEDGGYVLNGTKHFCSGAKGSDLLFVFGVVQDDSPQQGAIIAAAIPTSRAGVTPNDDWAAIGMRQTDSGSTDFHNVKVEPDEVLGAPNAFVLAFIQSERGSLFAPIAQLIFANVYLGIAHGALDAAREYTRTQARPWTPAGIQQATEDPYTIRSYGEFTIALQGADAAAREAAHLLQTVWDKGDALTPEDRGELMVKVSGVKALATNAALNISSGVFEVIGARGTHPRYGFDRFWRNVRTHSLHDPVSYKIADVGKHTLNGQYPIPGFTS'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Dibenzothiophene desulfurization enzyme C
publication title Crystallization and preliminary structural analysis of dibenzothiophene monooxygenase (DszC) from Rhodococcus erythropolis
pubmed doi rcsb
source organism Rhodococcus sp.
molecule tags Oxidoreductase
total genus 148
structure length 399
sequence length 399
chains with identical sequence B, C, D, E, F, G, H
ec nomenclature
pdb deposition date 2013-02-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02770 Acyl-CoA_dh_M Acyl-CoA dehydrogenase, middle domain
A PF02771 Acyl-CoA_dh_N Acyl-CoA dehydrogenase, N-terminal domain
A PF08028 Acyl-CoA_dh_2 Acyl-CoA dehydrogenase, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.540.10 Mainly Alpha Orthogonal Bundle Butyryl-Coa Dehydrogenase, subunit A; domain 1 Acyl-CoA dehydrogenase/oxidase, N-terminal domain 4jekA01
1.20.140.10 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A; domain 3 Butyryl-CoA Dehydrogenase, subunit A, domain 3 4jekA03
2.40.110.10 Mainly Beta Beta Barrel Butyryl-CoA Dehydrogenase, subunit A; domain 2 Butyryl-CoA Dehydrogenase, subunit A, domain 2 4jekA02
4Q0TA 3MXLA 5K3IA 2FONA 2OR0A 2EBAA 1EGEA 2REHA 2JBSA 3GNCA 1BUCA 3LG1A 3M9VA 1R2JA 3BNGA 2YYKA 3OWMA 3OIBA 2UXWA 3UU9A 3D9FA 4WJYA 2A1TA 1GU6A 2ZAFA 2JBTA 2R0NA 4M9AA 1T9GA 4RM7A 4Q5BA 3R7KA 5K3GA 2VR0A 3MPIA 3SWOA 3SCEA 1EGDA 2JBRA 2IX6A 3SF6A 3FO3A 4X28A 3SXQA 4L3XA 1EGCA 2RF7A 3NF4A 4Q4UA 4NXLA 4ZYJA 2JIFA 1JQIA 2R0MA 4JEKA 4DOYA 3FCJA 3BNJA 1U8VA 4P13A 4Q17A 1FS8A 3MDDA 3D9EA 4N5FA 5K3JA 2YYIA 2YYGA 3GQTA 4L1FA 3L1TA 2YYLA 1FS9A 4L3ZA 2VIGA 1FS7A 2CX9A 3F29A 3D1IA 4HR3A 2RFQA 5K3HA 4KCFA 3S7WA 2Z1QA 4Q1OA 2OT4A 4OO2A 3B96A 3OWAA 2J7AA 4IV6A 4L3YA 1SIRA 3EONA 2E80A 3MKHA 1W07A 3D6BA 2WBIA 1QDBA 4ZXVA 3D9GA 2RDZA 4Q5CA 4L38A 3TORA 3MDEA 2DDHA 1IS2A 3D9DA 2C12A 4U83A 3UBRA 1OAHA 3AFEA 2PG0A 4O5MA 2D29A 3LGQA 3MPJA 3P4TA 3PFDA 3BNHA 2DVLA 2E81A 2YYJA 4G5EA 3AFFA 1RX0A 1UDYA 4IRNA 4XVXA 2C0UA 4W9UA 4KTOA 1IVHA 1WS9A 3X0XA 3BNFA 2ZO5A 2YYMA 1UKWA 1SIQA 3RKHA 4X28C 3MMOA 2IX5A 3HWCA 3GM6A 3X0YA 3EOMA 3II9A 3TTBA
chains in the Genus database with same CATH superfamily
2XQRB 4F0XA 2CJ8A 2AO2A 1K8TA 4Q0TA 4AKIA 3MXLA 2EBHX 5K3IA 2CJ4A 2FONA 2OR0A 2EBAA 2ZKJA 1EGEA 2XS8A 2REHA 2JBSA 3GNCA 1BUCA 2BTZA 2CJ5A 3LG1A 3M9VA 1Y8PA 3C46A 1R2JA 5B5VA 3BNGA 2YYKA 2VF1A 3OWMA 3OIBA 2UXWA 2OEXA 5J6AA 1R3BA 3UU9A 2R03A 4P79A 4AKHA 3D9FA 4E00A 4WJYA 2A1TA 1GU6A 2ZAFA 2XS1A 2JBTA 1S26A 2OEVA 4MPEA 2R0NA 1X91A 1XFZA 4M9AA 1T9GA 4KS9A 4V25A 2Q8FA 4RM7A 4Q5BA 3TZ2A 4G97A 2ZDYA 3R7KA 5K3GA 3VADA 2VR0A 2QR4A 3MPIA 4E01A 3SWOA 2YGWA 3SCEA 1EGDA 4V26A 3TZ4A 4H7QA 2Q8GA 2JBRA 5M4KA 1XFXA 2IX6A 3SF6A 3FO3A 5B6BA 2BU7A 4X28A 4MP2A 2FP2A 3SXQA 4L3XA 1EGCA 5J71A 2RF7A 3CE2A 3NF4A 4Q4UA 4NXLA 4ZYJA 1LVCA 4KSFA 5GJVE 2JIFA 1JQIA 2R0MA 3D2RA 3Q24A 4JEKA 4DOYA 2BU5A 3Q0AA 2FP1A 4HKSA 3FCJA 2PO4A 3CRLA 3BNJA 1U8VA 4P13A 4JIZA 1FS8A 4KSAA 4Q17A 5M4NA 3MDDA 3U33A 5BRMA 3D9EA 4N5FA 3TZ5A 5K3JA 3DJLA 1X90A 3VKHA 2YYIA 2YYGA 5M4PA 2GBBA 3GQTA 4L1FA 2F6LA 1RJ1A 2YYLA 1FS9A 3L1TA 2VIGA 1FS7A 4L3ZA 1Y8NA 2BU8A 2CX9A 2E0AA 3F29A 4FF2A 5EZ3A 2EBFX 1Y0VA 1XFVA 3TZ0A 3D1IA 2OJQA 4HR3A 2RFQA 3Q23A 3C3LA 1JM6A 4MP7A 2BU6A 5K3HA 4KCFA 4FZ4A 3S7WA 1K93A 2Z1QA 1XFWA 4FF1A 1XG2B 1GKXA 2CJ6A 4Q1OA 2OT4A 4OO2A 3B96A 3OWAA 2J7AA 4IV6A 4HKRA 2BU2A 4AKGA 5GJWE 4L3YA 3X29A 1SIRA 3EONA 2E80A 4J1VA 2AZEA 3MKHA 4QICA 1W07A 1Y8OA 2R05A 3D6BA 1K90A 2WBIA 2HJNA 1QDBA 4ZXVA 1SK6A 3D9GA 1XFUA 2EC5A 2LFWA 2RDZA 4MPNA 4E02A 4H81A 4Q5CA 4AI6A 4L38A 1RP3A 3TORA 3MDEA 2DDHA 1IS2A 4H85A 5B5WA 3D9DA 2C12A 4U83A 3UBRA 1OAHA 4FF3A 3AFEA 4MPCA 2PG0A 4LQSB 4O5MA 2PNRA 2D29A 5M4MA 1GJVA 3LGQA 3MPJA 3P4TA 3PFDA 1X8ZA 2DVLA 3BNHA 4FF4A 2E81A 4JIOA 3KMLA 3VKGA 2YYJA 4G5EA 3AFFA 1RX0A 2ZDXA 3N0RA 1UDYA 3C2PA 4IRNA 5BRKA 1XFYA 2CJ7A 4XVXA 2C0UA 2R02A 4W9UA 4KTOA 4DZYA 3CRKA 4LQQB 2Q8IA 3Q22A 1IVHA 1WS9A 3X0XA 3BNFA 2Q8HA 2ZO5A 2YYMA 1UKWA 1SIQA 3RKHA 4X28C 1PK0A 2IX5A 3MMOA 3HWCA 3GM6A 3X0YA 1PI1A 1GKZA 3EOMA 1RJ4A 1SC5A 3II9A 3TTBA
chains in the Genus database with same CATH topology
4Q0TA 3MXLA 5K3IA 2FONA 2OR0A 2EBAA 1EGEA 2REHA 2JBSA 3GNCA 1BUCA 3LG1A 3M9VA 1R2JA 3BNGA 2YYKA 3OWMA 3OIBA 2UXWA 3UU9A 3D9FA 4WJYA 2A1TA 1GU6A 2ZAFA 2JBTA 2R0NA 4M9AA 1T9GA 4RM7A 4Q5BA 3R7KA 5K3GA 2VR0A 3MPIA 3SWOA 3SCEA 1EGDA 2JBRA 2IX6A 3SF6A 3FO3A 4X28A 3SXQA 4L3XA 1EGCA 2RF7A 3NF4A 4Q4UA 4NXLA 4ZYJA 2JIFA 1JQIA 2R0MA 4JEKA 4DOYA 3FCJA 3BNJA 1U8VA 4P13A 4Q17A 1FS8A 3MDDA 3D9EA 4N5FA 5K3JA 2YYIA 2YYGA 3GQTA 4L1FA 3L1TA 2YYLA 1FS9A 4L3ZA 2VIGA 1FS7A 2CX9A 3F29A 3D1IA 4HR3A 2RFQA 5K3HA 4KCFA 3S7WA 2Z1QA 4Q1OA 2OT4A 4OO2A 3B96A 3OWAA 2J7AA 4IV6A 4L3YA 1SIRA 3EONA 2E80A 3MKHA 1W07A 3D6BA 2WBIA 1QDBA 4ZXVA 3D9GA 2RDZA 4Q5CA 4L38A 3TORA 3MDEA 2DDHA 1IS2A 3D9DA 2C12A 4U83A 3UBRA 1OAHA 3AFEA 2PG0A 4O5MA 2D29A 3LGQA 3MPJA 3P4TA 3PFDA 3BNHA 2DVLA 2E81A 2YYJA 4G5EA 3AFFA 1RX0A 1UDYA 4IRNA 4XVXA 2C0UA 4W9UA 4KTOA 1IVHA 1WS9A 3X0XA 3BNFA 2ZO5A 2YYMA 1UKWA 1SIQA 3RKHA 4X28C 3MMOA 2IX5A 3HWCA 3GM6A 3X0YA 3EOMA 3II9A 3TTBA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4Q0T A;  3MXL A;  5K3I A;  2FON A;  2OR0 A;  2EBA A;  1EGE A;  2REH A;  2JBS A;  3GNC A;  1BUC A;  3LG1 A;  3M9V A;  1R2J A;  3BNG A;  2YYK A;  3OWM A;  3OIB A;  2UXW A;  3UU9 A;  3D9F A;  4WJY A;  2A1T A;  1GU6 A;  2ZAF A;  2JBT A;  2R0N A;  4M9A A;  1T9G A;  4RM7 A;  4Q5B A;  3R7K A;  5K3G A;  2VR0 A;  3MPI A;  3SWO A;  3SCE A;  1EGD A;  2JBR A;  2IX6 A;  3SF6 A;  3FO3 A;  4X28 A;  3SXQ A;  4L3X A;  1EGC A;  2RF7 A;  3NF4 A;  4Q4U A;  4NXL A;  4ZYJ A;  2JIF A;  1JQI A;  2R0M A;  4JEK A;  4DOY A;  3FCJ A;  3BNJ A;  1U8V A;  4P13 A;  4Q17 A;  1FS8 A;  3MDD A;  3D9E A;  4N5F A;  5K3J A;  2YYI A;  2YYG A;  3GQT A;  4L1F A;  3L1T A;  2YYL A;  1FS9 A;  4L3Z A;  2VIG A;  1FS7 A;  2CX9 A;  3F29 A;  3D1I A;  4HR3 A;  2RFQ A;  5K3H A;  4KCF A;  3S7W A;  2Z1Q A;  4Q1O A;  2OT4 A;  4OO2 A;  3B96 A;  3OWA A;  2J7A A;  4IV6 A;  4L3Y A;  1SIR A;  3EON A;  2E80 A;  3MKH A;  1W07 A;  3D6B A;  2WBI A;  1QDB A;  4ZXV A;  3D9G A;  2RDZ A;  4Q5C A;  4L38 A;  3TOR A;  3MDE A;  2DDH A;  1IS2 A;  3D9D A;  2C12 A;  4U83 A;  3UBR A;  1OAH A;  3AFE A;  2PG0 A;  4O5M A;  2D29 A;  3LGQ A;  3MPJ A;  3P4T A;  3PFD A;  3BNH A;  2DVL A;  2E81 A;  2YYJ A;  4G5E A;  3AFF A;  1RX0 A;  1UDY A;  4IRN A;  4XVX A;  2C0U A;  4W9U A;  4KTO A;  1IVH A;  1WS9 A;  3X0X A;  3BNF A;  2ZO5 A;  2YYM A;  1UKW A;  1SIQ A;  3RKH A;  4X28 C;  3MMO A;  2IX5 A;  3HWC A;  3GM6 A;  3X0Y A;  3EOM A;  3II9 A;  3TTB A; 
#chains in the Genus database with same CATH topology
 2XQR B;  4F0X A;  2CJ8 A;  2AO2 A;  1K8T A;  4Q0T A;  4AKI A;  3MXL A;  2EBH X;  5K3I A;  2CJ4 A;  2FON A;  2OR0 A;  2EBA A;  2ZKJ A;  1EGE A;  2XS8 A;  2REH A;  2JBS A;  3GNC A;  1BUC A;  2BTZ A;  2CJ5 A;  3LG1 A;  3M9V A;  1Y8P A;  3C46 A;  1R2J A;  5B5V A;  3BNG A;  2YYK A;  2VF1 A;  3OWM A;  3OIB A;  2UXW A;  2OEX A;  5J6A A;  1R3B A;  3UU9 A;  2R03 A;  4P79 A;  4AKH A;  3D9F A;  4E00 A;  4WJY A;  2A1T A;  1GU6 A;  2ZAF A;  2XS1 A;  2JBT A;  1S26 A;  2OEV A;  4MPE A;  2R0N A;  1X91 A;  1XFZ A;  4M9A A;  1T9G A;  4KS9 A;  4V25 A;  2Q8F A;  4RM7 A;  4Q5B A;  3TZ2 A;  4G97 A;  2ZDY A;  3R7K A;  5K3G A;  3VAD A;  2VR0 A;  2QR4 A;  3MPI A;  4E01 A;  3SWO A;  2YGW A;  3SCE A;  1EGD A;  4V26 A;  3TZ4 A;  4H7Q A;  2Q8G A;  2JBR A;  5M4K A;  1XFX A;  2IX6 A;  3SF6 A;  3FO3 A;  5B6B A;  2BU7 A;  4X28 A;  4MP2 A;  2FP2 A;  3SXQ A;  4L3X A;  1EGC A;  5J71 A;  2RF7 A;  3CE2 A;  3NF4 A;  4Q4U A;  4NXL A;  4ZYJ A;  1LVC A;  4KSF A;  5GJV E;  2JIF A;  1JQI A;  2R0M A;  3D2R A;  3Q24 A;  4JEK A;  4DOY A;  2BU5 A;  3Q0A A;  2FP1 A;  4HKS A;  3FCJ A;  2PO4 A;  3CRL A;  3BNJ A;  1U8V A;  4P13 A;  4JIZ A;  1FS8 A;  4KSA A;  4Q17 A;  5M4N A;  3MDD A;  3U33 A;  5BRM A;  3D9E A;  4N5F A;  3TZ5 A;  5K3J A;  3DJL A;  1X90 A;  3VKH A;  2YYI A;  2YYG A;  5M4P A;  2GBB A;  3GQT A;  4L1F A;  2F6L A;  1RJ1 A;  2YYL A;  1FS9 A;  3L1T A;  2VIG A;  1FS7 A;  4L3Z A;  1Y8N A;  2BU8 A;  2CX9 A;  2E0A A;  3F29 A;  4FF2 A;  5EZ3 A;  2EBF X;  1Y0V A;  1XFV A;  3TZ0 A;  3D1I A;  2OJQ A;  4HR3 A;  2RFQ A;  3Q23 A;  3C3L A;  1JM6 A;  4MP7 A;  2BU6 A;  5K3H A;  4KCF A;  4FZ4 A;  3S7W A;  1K93 A;  2Z1Q A;  1XFW A;  4FF1 A;  1XG2 B;  1GKX A;  2CJ6 A;  4Q1O A;  2OT4 A;  4OO2 A;  3B96 A;  3OWA A;  2J7A A;  4IV6 A;  4HKR A;  2BU2 A;  4AKG A;  5GJW E;  4L3Y A;  3X29 A;  1SIR A;  3EON A;  2E80 A;  4J1V A;  2AZE A;  3MKH A;  4QIC A;  1W07 A;  1Y8O A;  2R05 A;  3D6B A;  1K90 A;  2WBI A;  2HJN A;  1QDB A;  4ZXV A;  1SK6 A;  3D9G A;  1XFU A;  2EC5 A;  2LFW A;  2RDZ A;  4MPN A;  4E02 A;  4H81 A;  4Q5C A;  4AI6 A;  4L38 A;  1RP3 A;  3TOR A;  3MDE A;  2DDH A;  1IS2 A;  4H85 A;  5B5W A;  3D9D A;  2C12 A;  4U83 A;  3UBR A;  1OAH A;  4FF3 A;  3AFE A;  4MPC A;  2PG0 A;  4LQS B;  4O5M A;  2PNR A;  2D29 A;  5M4M A;  1GJV A;  3LGQ A;  3MPJ A;  3P4T A;  3PFD A;  1X8Z A;  2DVL A;  3BNH A;  4FF4 A;  2E81 A;  4JIO A;  3KML A;  3VKG A;  2YYJ A;  4G5E A;  3AFF A;  1RX0 A;  2ZDX A;  3N0R A;  1UDY A;  3C2P A;  4IRN A;  5BRK A;  1XFY A;  2CJ7 A;  4XVX A;  2C0U A;  2R02 A;  4W9U A;  4KTO A;  4DZY A;  3CRK A;  4LQQ B;  2Q8I A;  3Q22 A;  1IVH A;  1WS9 A;  3X0X A;  3BNF A;  2Q8H A;  2ZO5 A;  2YYM A;  1UKW A;  1SIQ A;  3RKH A;  4X28 C;  1PK0 A;  2IX5 A;  3MMO A;  3HWC A;  3GM6 A;  3X0Y A;  1PI1 A;  1GKZ A;  3EOM A;  1RJ4 A;  1SC5 A;  3II9 A;  3TTB A; 
#chains in the Genus database with same CATH homology
 4Q0T A;  3MXL A;  5K3I A;  2FON A;  2OR0 A;  2EBA A;  1EGE A;  2REH A;  2JBS A;  3GNC A;  1BUC A;  3LG1 A;  3M9V A;  1R2J A;  3BNG A;  2YYK A;  3OWM A;  3OIB A;  2UXW A;  3UU9 A;  3D9F A;  4WJY A;  2A1T A;  1GU6 A;  2ZAF A;  2JBT A;  2R0N A;  4M9A A;  1T9G A;  4RM7 A;  4Q5B A;  3R7K A;  5K3G A;  2VR0 A;  3MPI A;  3SWO A;  3SCE A;  1EGD A;  2JBR A;  2IX6 A;  3SF6 A;  3FO3 A;  4X28 A;  3SXQ A;  4L3X A;  1EGC A;  2RF7 A;  3NF4 A;  4Q4U A;  4NXL A;  4ZYJ A;  2JIF A;  1JQI A;  2R0M A;  4JEK A;  4DOY A;  3FCJ A;  3BNJ A;  1U8V A;  4P13 A;  4Q17 A;  1FS8 A;  3MDD A;  3D9E A;  4N5F A;  5K3J A;  2YYI A;  2YYG A;  3GQT A;  4L1F A;  3L1T A;  2YYL A;  1FS9 A;  4L3Z A;  2VIG A;  1FS7 A;  2CX9 A;  3F29 A;  3D1I A;  4HR3 A;  2RFQ A;  5K3H A;  4KCF A;  3S7W A;  2Z1Q A;  4Q1O A;  2OT4 A;  4OO2 A;  3B96 A;  3OWA A;  2J7A A;  4IV6 A;  4L3Y A;  1SIR A;  3EON A;  2E80 A;  3MKH A;  1W07 A;  3D6B A;  2WBI A;  1QDB A;  4ZXV A;  3D9G A;  2RDZ A;  4Q5C A;  4L38 A;  3TOR A;  3MDE A;  2DDH A;  1IS2 A;  3D9D A;  2C12 A;  4U83 A;  3UBR A;  1OAH A;  3AFE A;  2PG0 A;  4O5M A;  2D29 A;  3LGQ A;  3MPJ A;  3P4T A;  3PFD A;  3BNH A;  2DVL A;  2E81 A;  2YYJ A;  4G5E A;  3AFF A;  1RX0 A;  1UDY A;  4IRN A;  4XVX A;  2C0U A;  4W9U A;  4KTO A;  1IVH A;  1WS9 A;  3X0X A;  3BNF A;  2ZO5 A;  2YYM A;  1UKW A;  1SIQ A;  3RKH A;  4X28 C;  3MMO A;  2IX5 A;  3HWC A;  3GM6 A;  3X0Y A;  3EOM A;  3II9 A;  3TTB A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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