4JEKA

Structure of dibenzothiophene monooxygenase (dszc) from rhodococcus erythropolis
Total Genus 148
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
148
sequence length
399
structure length
399
Chain Sequence
DPVAVARGLAEKWRATAVERDRAGGSATAEREDLRASGLLSLLVPREYGGWGADWPTAIEVVREIAAADGSLGHLFGYHLTNAPMIELIGSQEQEEHLYTQIAQNNWWTGNASSENNSHVLDWKVSATPTEDGGYVLNGTKHFCSGAKGSDLLFVFGVVQDDSPQQGAIIAAAIPTSRAGVTPNDDWAAIGMRQTDSGSTDFHNVKVEPDEVLGAPNAFVLAFIQSERGSLFAPIAQLIFANVYLGIAHGALDAAREYTRTQARPWTPAGIQQATEDPYTIRSYGEFTIALQGADAAAREAAHLLQTVWDKGDALTPEDRGELMVKVSGVKALATNAALNISSGVFEVIGARGTHPRYGFDRFWRNVRTHSLHDPVSYKIADVGKHTLNGQYPIPGFTS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords Dibenzothiophene desulfurization enzyme C
publication title Crystallization and preliminary structural analysis of dibenzothiophene monooxygenase (DszC) from Rhodococcus erythropolis
pubmed doi rcsb
source organism Rhodococcus sp.
total genus 148
structure length 399
sequence length 399
chains with identical sequence B, C, D, E, F, G, H
ec nomenclature
pdb deposition date 2013-02-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02770 Acyl-CoA_dh_M Acyl-CoA dehydrogenase, middle domain
A PF02771 Acyl-CoA_dh_N Acyl-CoA dehydrogenase, N-terminal domain
A PF08028 Acyl-CoA_dh_2 Acyl-CoA dehydrogenase, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.540.10 Mainly Alpha Orthogonal Bundle Butyryl-Coa Dehydrogenase, subunit A; domain 1 Acyl-CoA dehydrogenase/oxidase, N-terminal domain 4jekA01
1.20.140.10 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A; domain 3 Butyryl-CoA Dehydrogenase, subunit A, domain 3 4jekA03
2.40.110.10 Mainly Beta Beta Barrel Butyryl-CoA Dehydrogenase, subunit A; domain 2 Butyryl-CoA Dehydrogenase, subunit A, domain 2 4jekA02
1IS2A 3SWOA 2C12A 4L38A 3TORA 1GU6A 4OO2A 3F29A 2REHA 2JIFA 1T9GA 4WJYA 1JQIA 2A1TA 3EONA 2J7AA 4Q5BA 4IRNA 4L1FA 3MMOA 3MDDA 1EGCA 1UKWA 1SIRA 3NF4A 1U8VA 2VIGA 3SF6A 4ZXVA 3MKHA 2D29A 3D9DA 1BUCA 2C0UA 2WBIA 3SCEA 2VR0A 1WS9A 3S7WA 3BNHA 2YYGA 1RX0A 1EGEA 2DVLA 3OWMA 3BNJA 3X0XA 2R0MA 3D9EA 3EOMA 4ZYJA 4L3XA 3R7KA 4Q4UA 3RKHA 2JBSA 2ZAFA 3FCJA 2IX5A 4Q5CA 1W07A 2YYIA 4Q17A 2JBTA 4N5FA 4DOYA 2EBAA 4P13A 2E81A 3M9VA 4L3ZA 3AFFA 4IV6A 2PG0A 4L3YA 1QDBA 3B96A 3LGQA 3BNFA 2E80A 2OT4A 3HWCA 5K3JA 2ZO5A 2YYJA 3SXQA 3GNCA 4Q1OA 3L1TA 1FS9A 3UU9A 4G5EA 3TTBA 1OAHA 2RDZA 3MPIA 2FONA 3D1IA 4Q0TA 2Z1QA 4X28C 5K3GA 2UXWA 2RF7A 3LG1A 2CX9A 3D9GA 3FO3A 4X28A 2R0NA 1SIQA 2JBRA 4RM7A 3OWAA 4U83A 4KTOA 4NXLA 3AFEA 3PFDA 2RFQA 4JEKA 1EGDA 3MPJA 2DDHA 3II9A 3X0YA 4KCFA 3OIBA 5K3IA 2YYLA 3P4TA 1UDYA 1R2JA 1FS7A 4O5MA 3MXLA 4M9AA 4XVXA 2YYMA 2YYKA 1IVHA 5K3HA 3D9FA 3GQTA 4W9UA 3GM6A 2OR0A 4HR3A 3BNGA 3D6BA 3MDEA 2IX6A 3UBRA 1FS8A
chains in the Genus database with same CATH superfamily
1IS2A 1Y8PA 3SWOA 2C12A 2BU6A 2ZKJA 3U33A 4L38A 3TORA 1XFWA 1GU6A 1Y8OA 4OO2A 1RP3A 5B6BA 3F29A 5B5VA 2REHA 1GJVA 3Q22A 2JIFA 1T9GA 2F6LA 4WJYA 5GJWE 1JQIA 2A1TA 3EONA 2J7AA 3CRLA 4Q5BA 4IRNA 4G97A 5J71A 4FF2A 4L1FA 3MMOA 1GKXA 3MDDA 1SK6A 4AKHA 1XFZA 1EGCA 1RJ1A 2R05A 5J6AA 1UKWA 1SIRA 3NF4A 1U8VA 4P79A 2VIGA 3SF6A 4ZXVA 3VADA 3C2PA 4FF1A 3MKHA 1PK0A 2D29A 3D9DA 1BUCA 2ZDXA 4FF3A 2CJ6A 1S26A 2C0UA 3TZ4A 4E02A 3Q0AA 4HKSA 2WBIA 3SCEA 2VR0A 1WS9A 3S7WA 3BNHA 4H81A 2YYGA 1X8ZA 1RX0A 3N0RA 1EGEA 2DVLA 3OWMA 3C46A 2Q8IA 5EZ3A 1XFXA 3BNJA 1XG2B 1XFVA 2AZEA 3CE2A 2CJ4A 4H85A 3X0XA 2R02A 2R0MA 3D9EA 3EOMA 2CJ8A 4FZ4A 4ZYJA 4L3XA 3R7KA 4Q4UA 3RKHA 1X90A 3TZ0A 1XFYA 2JBSA 4V25A 2ZAFA 3FCJA 2IX5A 1PI1A 1R3BA 2QR4A 4MPCA 1W07A 2YYIA 4Q5CA 3TZ5A 2OEXA 3DJLA 4Q17A 2BU7A 4JIZA 2JBTA 4N5FA 4AKGA 4DOYA 2EBAA 4V26A 2BU5A 4P13A 2E81A 3M9VA 4L3ZA 3AFFA 2Q8GA 4IV6A 2PG0A 4L3YA 1QDBA 4AKIA 3B96A 3LGQA 3BNFA 1SC5A 3CRKA 2PO4A 2E80A 2OT4A 1LVCA 4QICA 3HWCA 5K3JA 5M4MA 2ZO5A 2OEVA 2YYJA 4KS9A 4H7QA 4KSFA 4MP2A 3SXQA 3VKGA 3GNCA 2YGWA 4Q1OA 3C3LA 3L1TA 1FS9A 4E00A 2BTZA 4LQSB 4LQQB 4F0XA 3Q24A 3UU9A 3Q23A 4G5EA 1XFUA 2BU8A 2XS8A 2ZDYA 3TTBA 3VKHA 4E01A 2CJ7A 1OAHA 2RDZA 3MPIA 2E0AA 2GBBA 2FP2A 3X29A 5BRKA 2FONA 3D1IA 1K93A 4Q0TA 5M4PA 2Z1QA 1JM6A 4X28C 1X91A 2BU2A 2PNRA 2Q8FA 3KMLA 1Y0VA 5K3GA 2HJNA 2UXWA 2RF7A 3LG1A 1K8TA 4KSAA 2CX9A 2CJ5A 3D9GA 3FO3A 4X28A 2R0NA 2FP1A 1SIQA 2LFWA 2JBRA 4RM7A 3OWAA 4U83A 4KTOA 2XS1A 4HKRA 4NXLA 3AFEA 3PFDA 2RFQA 4JEKA 1Y8NA 3D2RA 1EGDA 3MPJA 4J1VA 3TZ2A 2DDHA 3II9A 2AO2A 5B5WA 5M4NA 3X0YA 4KCFA 2Q8HA 3OIBA 5K3IA 2YYLA 3P4TA 1UDYA 1R2JA 1FS7A 1K90A 2OJQA 4O5MA 3MXLA 4M9AA 4XVXA 2EBHX 2YYKA 2YYMA 4MPEA 1IVHA 5K3HA 3D9FA 5BRMA 4DZYA 3GQTA 4W9UA 1GKZA 2XQRB 3GM6A 2OR0A 1RJ4A 4HR3A 2EC5A 2R03A 3BNGA 4JIOA 4MP7A 5M4KA 4FF4A 2VF1A 4MPNA 3D6BA 3MDEA 5GJVE 2EBFX 2IX6A 3UBRA 4AI6A 1FS8A
chains in the Genus database with same CATH topology
1IS2A 3SWOA 2C12A 4L38A 3TORA 1GU6A 4OO2A 3F29A 2REHA 2JIFA 1T9GA 4WJYA 1JQIA 2A1TA 3EONA 2J7AA 4Q5BA 4IRNA 4L1FA 3MMOA 3MDDA 1EGCA 1UKWA 1SIRA 3NF4A 1U8VA 2VIGA 3SF6A 4ZXVA 3MKHA 2D29A 3D9DA 1BUCA 2C0UA 2WBIA 3SCEA 2VR0A 1WS9A 3S7WA 3BNHA 2YYGA 1RX0A 1EGEA 2DVLA 3OWMA 3BNJA 3X0XA 2R0MA 3D9EA 3EOMA 4ZYJA 4L3XA 3R7KA 4Q4UA 3RKHA 2JBSA 2ZAFA 3FCJA 2IX5A 4Q5CA 1W07A 2YYIA 4Q17A 2JBTA 4N5FA 4DOYA 2EBAA 4P13A 2E81A 3M9VA 4L3ZA 3AFFA 4IV6A 2PG0A 4L3YA 1QDBA 3B96A 3LGQA 3BNFA 2E80A 2OT4A 3HWCA 5K3JA 2ZO5A 2YYJA 3SXQA 3GNCA 4Q1OA 3L1TA 1FS9A 3UU9A 4G5EA 3TTBA 1OAHA 2RDZA 3MPIA 2FONA 3D1IA 4Q0TA 2Z1QA 4X28C 5K3GA 2UXWA 2RF7A 3LG1A 2CX9A 3D9GA 3FO3A 4X28A 2R0NA 1SIQA 2JBRA 4RM7A 3OWAA 4U83A 4KTOA 4NXLA 3AFEA 3PFDA 2RFQA 4JEKA 1EGDA 3MPJA 2DDHA 3II9A 3X0YA 4KCFA 3OIBA 5K3IA 2YYLA 3P4TA 1UDYA 1R2JA 1FS7A 4O5MA 3MXLA 4M9AA 4XVXA 2YYMA 2YYKA 1IVHA 5K3HA 3D9FA 3GQTA 4W9UA 3GM6A 2OR0A 4HR3A 3BNGA 3D6BA 3MDEA 2IX6A 3UBRA 1FS8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1IS2 A;  3SWO A;  2C12 A;  4L38 A;  3TOR A;  1GU6 A;  4OO2 A;  3F29 A;  2REH A;  2JIF A;  1T9G A;  4WJY A;  1JQI A;  2A1T A;  3EON A;  2J7A A;  4Q5B A;  4IRN A;  4L1F A;  3MMO A;  3MDD A;  1EGC A;  1UKW A;  1SIR A;  3NF4 A;  1U8V A;  2VIG A;  3SF6 A;  4ZXV A;  3MKH A;  2D29 A;  3D9D A;  1BUC A;  2C0U A;  2WBI A;  3SCE A;  2VR0 A;  1WS9 A;  3S7W A;  3BNH A;  2YYG A;  1RX0 A;  1EGE A;  2DVL A;  3OWM A;  3BNJ A;  3X0X A;  2R0M A;  3D9E A;  3EOM A;  4ZYJ A;  4L3X A;  3R7K A;  4Q4U A;  3RKH A;  2JBS A;  2ZAF A;  3FCJ A;  2IX5 A;  4Q5C A;  1W07 A;  2YYI A;  4Q17 A;  2JBT A;  4N5F A;  4DOY A;  2EBA A;  4P13 A;  2E81 A;  3M9V A;  4L3Z A;  3AFF A;  4IV6 A;  2PG0 A;  4L3Y A;  1QDB A;  3B96 A;  3LGQ A;  3BNF A;  2E80 A;  2OT4 A;  3HWC A;  5K3J A;  2ZO5 A;  2YYJ A;  3SXQ A;  3GNC A;  4Q1O A;  3L1T A;  1FS9 A;  3UU9 A;  4G5E A;  3TTB A;  1OAH A;  2RDZ A;  3MPI A;  2FON A;  3D1I A;  4Q0T A;  2Z1Q A;  4X28 C;  5K3G A;  2UXW A;  2RF7 A;  3LG1 A;  2CX9 A;  3D9G A;  3FO3 A;  4X28 A;  2R0N A;  1SIQ A;  2JBR A;  4RM7 A;  3OWA A;  4U83 A;  4KTO A;  4NXL A;  3AFE A;  3PFD A;  2RFQ A;  4JEK A;  1EGD A;  3MPJ A;  2DDH A;  3II9 A;  3X0Y A;  4KCF A;  3OIB A;  5K3I A;  2YYL A;  3P4T A;  1UDY A;  1R2J A;  1FS7 A;  4O5M A;  3MXL A;  4M9A A;  4XVX A;  2YYM A;  2YYK A;  1IVH A;  5K3H A;  3D9F A;  3GQT A;  4W9U A;  3GM6 A;  2OR0 A;  4HR3 A;  3BNG A;  3D6B A;  3MDE A;  2IX6 A;  3UBR A;  1FS8 A; 
#chains in the Genus database with same CATH topology
 1IS2 A;  1Y8P A;  3SWO A;  2C12 A;  2BU6 A;  2ZKJ A;  3U33 A;  4L38 A;  3TOR A;  1XFW A;  1GU6 A;  1Y8O A;  4OO2 A;  1RP3 A;  5B6B A;  3F29 A;  5B5V A;  2REH A;  1GJV A;  3Q22 A;  2JIF A;  1T9G A;  2F6L A;  4WJY A;  5GJW E;  1JQI A;  2A1T A;  3EON A;  2J7A A;  3CRL A;  4Q5B A;  4IRN A;  4G97 A;  5J71 A;  4FF2 A;  4L1F A;  3MMO A;  1GKX A;  3MDD A;  1SK6 A;  4AKH A;  1XFZ A;  1EGC A;  1RJ1 A;  2R05 A;  5J6A A;  1UKW A;  1SIR A;  3NF4 A;  1U8V A;  4P79 A;  2VIG A;  3SF6 A;  4ZXV A;  3VAD A;  3C2P A;  4FF1 A;  3MKH A;  1PK0 A;  2D29 A;  3D9D A;  1BUC A;  2ZDX A;  4FF3 A;  2CJ6 A;  1S26 A;  2C0U A;  3TZ4 A;  4E02 A;  3Q0A A;  4HKS A;  2WBI A;  3SCE A;  2VR0 A;  1WS9 A;  3S7W A;  3BNH A;  4H81 A;  2YYG A;  1X8Z A;  1RX0 A;  3N0R A;  1EGE A;  2DVL A;  3OWM A;  3C46 A;  2Q8I A;  5EZ3 A;  1XFX A;  3BNJ A;  1XG2 B;  1XFV A;  2AZE A;  3CE2 A;  2CJ4 A;  4H85 A;  3X0X A;  2R02 A;  2R0M A;  3D9E A;  3EOM A;  2CJ8 A;  4FZ4 A;  4ZYJ A;  4L3X A;  3R7K A;  4Q4U A;  3RKH A;  1X90 A;  3TZ0 A;  1XFY A;  2JBS A;  4V25 A;  2ZAF A;  3FCJ A;  2IX5 A;  1PI1 A;  1R3B A;  2QR4 A;  4MPC A;  1W07 A;  2YYI A;  4Q5C A;  3TZ5 A;  2OEX A;  3DJL A;  4Q17 A;  2BU7 A;  4JIZ A;  2JBT A;  4N5F A;  4AKG A;  4DOY A;  2EBA A;  4V26 A;  2BU5 A;  4P13 A;  2E81 A;  3M9V A;  4L3Z A;  3AFF A;  2Q8G A;  4IV6 A;  2PG0 A;  4L3Y A;  1QDB A;  4AKI A;  3B96 A;  3LGQ A;  3BNF A;  1SC5 A;  3CRK A;  2PO4 A;  2E80 A;  2OT4 A;  1LVC A;  4QIC A;  3HWC A;  5K3J A;  5M4M A;  2ZO5 A;  2OEV A;  2YYJ A;  4KS9 A;  4H7Q A;  4KSF A;  4MP2 A;  3SXQ A;  3VKG A;  3GNC A;  2YGW A;  4Q1O A;  3C3L A;  3L1T A;  1FS9 A;  4E00 A;  2BTZ A;  4LQS B;  4LQQ B;  4F0X A;  3Q24 A;  3UU9 A;  3Q23 A;  4G5E A;  1XFU A;  2BU8 A;  2XS8 A;  2ZDY A;  3TTB A;  3VKH A;  4E01 A;  2CJ7 A;  1OAH A;  2RDZ A;  3MPI A;  2E0A A;  2GBB A;  2FP2 A;  3X29 A;  5BRK A;  2FON A;  3D1I A;  1K93 A;  4Q0T A;  5M4P A;  2Z1Q A;  1JM6 A;  4X28 C;  1X91 A;  2BU2 A;  2PNR A;  2Q8F A;  3KML A;  1Y0V A;  5K3G A;  2HJN A;  2UXW A;  2RF7 A;  3LG1 A;  1K8T A;  4KSA A;  2CX9 A;  2CJ5 A;  3D9G A;  3FO3 A;  4X28 A;  2R0N A;  2FP1 A;  1SIQ A;  2LFW A;  2JBR A;  4RM7 A;  3OWA A;  4U83 A;  4KTO A;  2XS1 A;  4HKR A;  4NXL A;  3AFE A;  3PFD A;  2RFQ A;  4JEK A;  1Y8N A;  3D2R A;  1EGD A;  3MPJ A;  4J1V A;  3TZ2 A;  2DDH A;  3II9 A;  2AO2 A;  5B5W A;  5M4N A;  3X0Y A;  4KCF A;  2Q8H A;  3OIB A;  5K3I A;  2YYL A;  3P4T A;  1UDY A;  1R2J A;  1FS7 A;  1K90 A;  2OJQ A;  4O5M A;  3MXL A;  4M9A A;  4XVX A;  2EBH X;  2YYK A;  2YYM A;  4MPE A;  1IVH A;  5K3H A;  3D9F A;  5BRM A;  4DZY A;  3GQT A;  4W9U A;  1GKZ A;  2XQR B;  3GM6 A;  2OR0 A;  1RJ4 A;  4HR3 A;  2EC5 A;  2R03 A;  3BNG A;  4JIO A;  4MP7 A;  5M4K A;  4FF4 A;  2VF1 A;  4MPN A;  3D6B A;  3MDE A;  5GJV E;  2EBF X;  2IX6 A;  3UBR A;  4AI6 A;  1FS8 A; 
#chains in the Genus database with same CATH homology
 1IS2 A;  3SWO A;  2C12 A;  4L38 A;  3TOR A;  1GU6 A;  4OO2 A;  3F29 A;  2REH A;  2JIF A;  1T9G A;  4WJY A;  1JQI A;  2A1T A;  3EON A;  2J7A A;  4Q5B A;  4IRN A;  4L1F A;  3MMO A;  3MDD A;  1EGC A;  1UKW A;  1SIR A;  3NF4 A;  1U8V A;  2VIG A;  3SF6 A;  4ZXV A;  3MKH A;  2D29 A;  3D9D A;  1BUC A;  2C0U A;  2WBI A;  3SCE A;  2VR0 A;  1WS9 A;  3S7W A;  3BNH A;  2YYG A;  1RX0 A;  1EGE A;  2DVL A;  3OWM A;  3BNJ A;  3X0X A;  2R0M A;  3D9E A;  3EOM A;  4ZYJ A;  4L3X A;  3R7K A;  4Q4U A;  3RKH A;  2JBS A;  2ZAF A;  3FCJ A;  2IX5 A;  4Q5C A;  1W07 A;  2YYI A;  4Q17 A;  2JBT A;  4N5F A;  4DOY A;  2EBA A;  4P13 A;  2E81 A;  3M9V A;  4L3Z A;  3AFF A;  4IV6 A;  2PG0 A;  4L3Y A;  1QDB A;  3B96 A;  3LGQ A;  3BNF A;  2E80 A;  2OT4 A;  3HWC A;  5K3J A;  2ZO5 A;  2YYJ A;  3SXQ A;  3GNC A;  4Q1O A;  3L1T A;  1FS9 A;  3UU9 A;  4G5E A;  3TTB A;  1OAH A;  2RDZ A;  3MPI A;  2FON A;  3D1I A;  4Q0T A;  2Z1Q A;  4X28 C;  5K3G A;  2UXW A;  2RF7 A;  3LG1 A;  2CX9 A;  3D9G A;  3FO3 A;  4X28 A;  2R0N A;  1SIQ A;  2JBR A;  4RM7 A;  3OWA A;  4U83 A;  4KTO A;  4NXL A;  3AFE A;  3PFD A;  2RFQ A;  4JEK A;  1EGD A;  3MPJ A;  2DDH A;  3II9 A;  3X0Y A;  4KCF A;  3OIB A;  5K3I A;  2YYL A;  3P4T A;  1UDY A;  1R2J A;  1FS7 A;  4O5M A;  3MXL A;  4M9A A;  4XVX A;  2YYM A;  2YYK A;  1IVH A;  5K3H A;  3D9F A;  3GQT A;  4W9U A;  3GM6 A;  2OR0 A;  4HR3 A;  3BNG A;  3D6B A;  3MDE A;  2IX6 A;  3UBR A;  1FS8 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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