4JEKA

Structure of dibenzothiophene monooxygenase (dszc) from rhodococcus erythropolis
Total Genus 148
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
148
sequence length
399
structure length
399
Chain Sequence
DPVAVARGLAEKWRATAVERDRAGGSATAEREDLRASGLLSLLVPREYGGWGADWPTAIEVVREIAAADGSLGHLFGYHLTNAPMIELIGSQEQEEHLYTQIAQNNWWTGNASSENNSHVLDWKVSATPTEDGGYVLNGTKHFCSGAKGSDLLFVFGVVQDDSPQQGAIIAAAIPTSRAGVTPNDDWAAIGMRQTDSGSTDFHNVKVEPDEVLGAPNAFVLAFIQSERGSLFAPIAQLIFANVYLGIAHGALDAAREYTRTQARPWTPAGIQQATEDPYTIRSYGEFTIALQGADAAAREAAHLLQTVWDKGDALTPEDRGELMVKVSGVKALATNAALNISSGVFEVIGARGTHPRYGFDRFWRNVRTHSLHDPVSYKIADVGKHTLNGQYPIPGFTS
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords Dibenzothiophene desulfurization enzyme C
publication title Crystallization and preliminary structural analysis of dibenzothiophene monooxygenase (DszC) from Rhodococcus erythropolis
pubmed doi rcsb
source organism Rhodococcus sp.
total genus 148
structure length 399
sequence length 399
chains with identical sequence B, C, D, E, F, G, H
ec nomenclature
pdb deposition date 2013-02-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02770 Acyl-CoA_dh_M Acyl-CoA dehydrogenase, middle domain
A PF02771 Acyl-CoA_dh_N Acyl-CoA dehydrogenase, N-terminal domain
A PF08028 Acyl-CoA_dh_2 Acyl-CoA dehydrogenase, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.540.10 Mainly Alpha Orthogonal Bundle Butyryl-Coa Dehydrogenase, subunit A; domain 1 Acyl-CoA dehydrogenase/oxidase, N-terminal domain 4jekA01
1.20.140.10 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A; domain 3 Butyryl-CoA Dehydrogenase, subunit A, domain 3 4jekA03
2.40.110.10 Mainly Beta Beta Barrel Butyryl-CoA Dehydrogenase, subunit A; domain 2 Butyryl-CoA Dehydrogenase, subunit A, domain 2 4jekA02
2RF7A 4IV6A 3BNJA 1FS9A 2OR0A 2OT4A 3AFFA 4OO2A 2D29A 3LG1A 4KCFA 3OIBA 2DVLA 1JQIA 2IX5A 3MDDA 3MPJA 3F29A 1BUCA 1EGCA 4L1FA 3X0YA 4XVXA 1GU6A 2VR0A 3SWOA 4P13A 3TTBA 3NF4A 4JEKA 4N5FA 3RKHA 3GNCA 2VIGA 3FO3A 4M9AA 3OWMA 3D9FA 4Q4UA 3L1TA 4ZXVA 4G5EA 2REHA 3MKHA 3B96A 2RFQA 2CX9A 3MPIA 3TORA 4ZYJA 2R0MA 2RDZA 3GM6A 2JBTA 3SXQA 4Q0TA 1WS9A 4IRNA 4L38A 2YYGA 4DOYA 1SIRA 2C0UA 2Z1QA 2DDHA 3UBRA 4NXLA 2ZO5A 3M9VA 2FONA 4U83A 1FS7A 1IS2A 3R7KA 3D6BA 1UKWA 4X28C 2JIFA 2J7AA 1EGDA 2IX6A 3X0XA 3MXLA 1FS8A 3D1IA 2WBIA 1RX0A 3MMOA 4RM7A 3OWAA 3MDEA 3BNFA 2ZAFA 2C12A 3LGQA 1EGEA 3D9GA 3D9EA 3P4TA 1OAHA 3BNGA 3UU9A 5K3HA 1SIQA 2E80A 1T9GA 3EONA 2YYLA 2JBSA 4L3ZA 1R2JA 2R0NA 4L3XA 1W07A 1U8VA 2E81A 2PG0A 3AFEA 3BNHA 3II9A 1IVHA 4WJYA 3GQTA 2A1TA 4HR3A 2YYKA 4Q5BA 2YYMA 3HWCA 5K3GA 2YYIA 3D9DA 4X28A 1UDYA 3SCEA 3EOMA 3PFDA 3SF6A 4Q5CA 4Q17A 4W9UA 4O5MA 5K3JA 3S7WA 2YYJA 4Q1OA 4KTOA 2EBAA 2UXWA 2JBRA 3FCJA 5K3IA 1QDBA 4L3YA
chains in the Genus database with same CATH superfamily
2RF7A 1PK0A 4IV6A 2BU7A 2ZDYA 3BNJA 2R05A 1FS9A 2Q8GA 2OR0A 2OT4A 3AFFA 4OO2A 2D29A 5B5VA 3LG1A 4KCFA 3OIBA 4LQSB 2DVLA 1JQIA 2IX5A 3MDDA 3MPJA 3N0RA 3F29A 4AKHA 1BUCA 1EGCA 4L1FA 3X0YA 1XFXA 3CRLA 2BU5A 4XVXA 1GU6A 2CJ6A 3SWOA 4P13A 1XG2B 2VR0A 3TTBA 3NF4A 4JEKA 4N5FA 3RKHA 3GNCA 2VIGA 4H85A 3FO3A 3Q24A 4M9AA 4H81A 2Q8IA 3OWMA 4P79A 3D9FA 4Q4UA 1SC5A 1X91A 4ZXVA 3L1TA 4G5EA 2REHA 3MKHA 2HJNA 3B96A 4MPNA 2PNRA 2RFQA 4KS9A 3U33A 2CX9A 2AZEA 3MPIA 2CJ8A 3TORA 4ZYJA 2R0MA 2BU6A 2RDZA 3GM6A 2LFWA 2JBTA 4AI6A 3SXQA 5M4KA 2AO2A 2BTZA 1RJ1A 2EC5A 1WS9A 4IRNA 4L38A 4Q0TA 4MPEA 2YYGA 4DOYA 2E0AA 2Q8FA 3Q23A 4FF4A 1SIRA 3Q0AA 2C0UA 2Z1QA 4FF3A 4H7QA 4G97A 2FP1A 3VKGA 2DDHA 1RP3A 5BRMA 3UBRA 2ZDXA 3KMLA 4NXLA 2ZO5A 2BU8A 3M9VA 2CJ7A 2FONA 4FF2A 1JM6A 2OJQA 4U83A 3X29A 4FZ4A 1FS7A 2VF1A 1IS2A 3R7KA 1SK6A 2GBBA 3D6BA 1UKWA 4X28C 4J1VA 3CRKA 4E02A 4KSAA 4FF1A 2JIFA 4JIOA 2J7AA 1EGDA 1XFVA 1XFUA 4KSFA 2IX6A 2BU2A 3CE2A 4QICA 3X0XA 2PO4A 3MXLA 1FS8A 3D1IA 2WBIA 2XS1A 1RX0A 4MP2A 3MMOA 4RM7A 3OWAA 3MDEA 1XFZA 1GKZA 2OEXA 2XQRB 3BNFA 2ZAFA 3TZ0A 2C12A 4V26A 3TZ4A 3LGQA 1EGEA 3D9GA 2YGWA 1RJ4A 3D9EA 3P4TA 1OAHA 1PI1A 2F6LA 5B5WA 3D2RA 4LQQB 2ZKJA 4E00A 3BNGA 3UU9A 3VKHA 1XFWA 4JIZA 5K3HA 1SIQA 2OEVA 5J6AA 4F0XA 2E80A 4V25A 1T9GA 2FP2A 5J71A 3EONA 2YYLA 1LVCA 3C2PA 2Q8HA 2JBSA 1Y0VA 2QR4A 4L3ZA 1R2JA 2R0NA 1XFYA 1Y8PA 1K93A 4L3XA 1W07A 1U8VA 2E81A 2EBHX 2PG0A 4HKSA 3AFEA 4E01A 3BNHA 3C46A 3II9A 1GKXA 1K8TA 2CJ5A 2EBFX 4AKGA 4HKRA 1IVHA 4WJYA 1GJVA 3GQTA 2A1TA 1X8ZA 2XS8A 4HR3A 1R3BA 3C3LA 2YYKA 2CJ4A 4Q5BA 2YYMA 3HWCA 3TZ5A 4AKIA 3TZ2A 2R02A 5K3GA 2YYIA 3D9DA 5EZ3A 4X28A 1UDYA 3SCEA 2R03A 3EOMA 5BRKA 3DJLA 1X90A 3PFDA 3SF6A 4Q5CA 3Q22A 4Q17A 4W9UA 4O5MA 1Y8NA 1K90A 5K3JA 5GJWE 4MP7A 3S7WA 3VADA 2YYJA 4Q1OA 5B6BA 4KTOA 2EBAA 2UXWA 2JBRA 1S26A 1Y8OA 3FCJA 5K3IA 4MPCA 5M4NA 1QDBA 5M4PA 5M4MA 4DZYA 4L3YA 5GJVE
chains in the Genus database with same CATH topology
2RF7A 4IV6A 3BNJA 1FS9A 2OR0A 2OT4A 3AFFA 4OO2A 2D29A 3LG1A 4KCFA 3OIBA 2DVLA 1JQIA 2IX5A 3MDDA 3MPJA 3F29A 1BUCA 1EGCA 4L1FA 3X0YA 4XVXA 1GU6A 2VR0A 3SWOA 4P13A 3TTBA 3NF4A 4JEKA 4N5FA 3RKHA 3GNCA 2VIGA 3FO3A 4M9AA 3OWMA 3D9FA 4Q4UA 3L1TA 4ZXVA 4G5EA 2REHA 3MKHA 3B96A 2RFQA 2CX9A 3MPIA 3TORA 4ZYJA 2R0MA 2RDZA 3GM6A 2JBTA 3SXQA 4Q0TA 1WS9A 4IRNA 4L38A 2YYGA 4DOYA 1SIRA 2C0UA 2Z1QA 2DDHA 3UBRA 4NXLA 2ZO5A 3M9VA 2FONA 4U83A 1FS7A 1IS2A 3R7KA 3D6BA 1UKWA 4X28C 2JIFA 2J7AA 1EGDA 2IX6A 3X0XA 3MXLA 1FS8A 3D1IA 2WBIA 1RX0A 3MMOA 4RM7A 3OWAA 3MDEA 3BNFA 2ZAFA 2C12A 3LGQA 1EGEA 3D9GA 3D9EA 3P4TA 1OAHA 3BNGA 3UU9A 5K3HA 1SIQA 2E80A 1T9GA 3EONA 2YYLA 2JBSA 4L3ZA 1R2JA 2R0NA 4L3XA 1W07A 1U8VA 2E81A 2PG0A 3AFEA 3BNHA 3II9A 1IVHA 4WJYA 3GQTA 2A1TA 4HR3A 2YYKA 4Q5BA 2YYMA 3HWCA 5K3GA 2YYIA 3D9DA 4X28A 1UDYA 3SCEA 3EOMA 3PFDA 3SF6A 4Q5CA 4Q17A 4W9UA 4O5MA 5K3JA 3S7WA 2YYJA 4Q1OA 4KTOA 2EBAA 2UXWA 2JBRA 3FCJA 5K3IA 1QDBA 4L3YA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2RF7 A;  4IV6 A;  3BNJ A;  1FS9 A;  2OR0 A;  2OT4 A;  3AFF A;  4OO2 A;  2D29 A;  3LG1 A;  4KCF A;  3OIB A;  2DVL A;  1JQI A;  2IX5 A;  3MDD A;  3MPJ A;  3F29 A;  1BUC A;  1EGC A;  4L1F A;  3X0Y A;  4XVX A;  1GU6 A;  2VR0 A;  3SWO A;  4P13 A;  3TTB A;  3NF4 A;  4JEK A;  4N5F A;  3RKH A;  3GNC A;  2VIG A;  3FO3 A;  4M9A A;  3OWM A;  3D9F A;  4Q4U A;  3L1T A;  4ZXV A;  4G5E A;  2REH A;  3MKH A;  3B96 A;  2RFQ A;  2CX9 A;  3MPI A;  3TOR A;  4ZYJ A;  2R0M A;  2RDZ A;  3GM6 A;  2JBT A;  3SXQ A;  4Q0T A;  1WS9 A;  4IRN A;  4L38 A;  2YYG A;  4DOY A;  1SIR A;  2C0U A;  2Z1Q A;  2DDH A;  3UBR A;  4NXL A;  2ZO5 A;  3M9V A;  2FON A;  4U83 A;  1FS7 A;  1IS2 A;  3R7K A;  3D6B A;  1UKW A;  4X28 C;  2JIF A;  2J7A A;  1EGD A;  2IX6 A;  3X0X A;  3MXL A;  1FS8 A;  3D1I A;  2WBI A;  1RX0 A;  3MMO A;  4RM7 A;  3OWA A;  3MDE A;  3BNF A;  2ZAF A;  2C12 A;  3LGQ A;  1EGE A;  3D9G A;  3D9E A;  3P4T A;  1OAH A;  3BNG A;  3UU9 A;  5K3H A;  1SIQ A;  2E80 A;  1T9G A;  3EON A;  2YYL A;  2JBS A;  4L3Z A;  1R2J A;  2R0N A;  4L3X A;  1W07 A;  1U8V A;  2E81 A;  2PG0 A;  3AFE A;  3BNH A;  3II9 A;  1IVH A;  4WJY A;  3GQT A;  2A1T A;  4HR3 A;  2YYK A;  4Q5B A;  2YYM A;  3HWC A;  5K3G A;  2YYI A;  3D9D A;  4X28 A;  1UDY A;  3SCE A;  3EOM A;  3PFD A;  3SF6 A;  4Q5C A;  4Q17 A;  4W9U A;  4O5M A;  5K3J A;  3S7W A;  2YYJ A;  4Q1O A;  4KTO A;  2EBA A;  2UXW A;  2JBR A;  3FCJ A;  5K3I A;  1QDB A;  4L3Y A; 
#chains in the Genus database with same CATH topology
 2RF7 A;  1PK0 A;  4IV6 A;  2BU7 A;  2ZDY A;  3BNJ A;  2R05 A;  1FS9 A;  2Q8G A;  2OR0 A;  2OT4 A;  3AFF A;  4OO2 A;  2D29 A;  5B5V A;  3LG1 A;  4KCF A;  3OIB A;  4LQS B;  2DVL A;  1JQI A;  2IX5 A;  3MDD A;  3MPJ A;  3N0R A;  3F29 A;  4AKH A;  1BUC A;  1EGC A;  4L1F A;  3X0Y A;  1XFX A;  3CRL A;  2BU5 A;  4XVX A;  1GU6 A;  2CJ6 A;  3SWO A;  4P13 A;  1XG2 B;  2VR0 A;  3TTB A;  3NF4 A;  4JEK A;  4N5F A;  3RKH A;  3GNC A;  2VIG A;  4H85 A;  3FO3 A;  3Q24 A;  4M9A A;  4H81 A;  2Q8I A;  3OWM A;  4P79 A;  3D9F A;  4Q4U A;  1SC5 A;  1X91 A;  4ZXV A;  3L1T A;  4G5E A;  2REH A;  3MKH A;  2HJN A;  3B96 A;  4MPN A;  2PNR A;  2RFQ A;  4KS9 A;  3U33 A;  2CX9 A;  2AZE A;  3MPI A;  2CJ8 A;  3TOR A;  4ZYJ A;  2R0M A;  2BU6 A;  2RDZ A;  3GM6 A;  2LFW A;  2JBT A;  4AI6 A;  3SXQ A;  5M4K A;  2AO2 A;  2BTZ A;  1RJ1 A;  2EC5 A;  1WS9 A;  4IRN A;  4L38 A;  4Q0T A;  4MPE A;  2YYG A;  4DOY A;  2E0A A;  2Q8F A;  3Q23 A;  4FF4 A;  1SIR A;  3Q0A A;  2C0U A;  2Z1Q A;  4FF3 A;  4H7Q A;  4G97 A;  2FP1 A;  3VKG A;  2DDH A;  1RP3 A;  5BRM A;  3UBR A;  2ZDX A;  3KML A;  4NXL A;  2ZO5 A;  2BU8 A;  3M9V A;  2CJ7 A;  2FON A;  4FF2 A;  1JM6 A;  2OJQ A;  4U83 A;  3X29 A;  4FZ4 A;  1FS7 A;  2VF1 A;  1IS2 A;  3R7K A;  1SK6 A;  2GBB A;  3D6B A;  1UKW A;  4X28 C;  4J1V A;  3CRK A;  4E02 A;  4KSA A;  4FF1 A;  2JIF A;  4JIO A;  2J7A A;  1EGD A;  1XFV A;  1XFU A;  4KSF A;  2IX6 A;  2BU2 A;  3CE2 A;  4QIC A;  3X0X A;  2PO4 A;  3MXL A;  1FS8 A;  3D1I A;  2WBI A;  2XS1 A;  1RX0 A;  4MP2 A;  3MMO A;  4RM7 A;  3OWA A;  3MDE A;  1XFZ A;  1GKZ A;  2OEX A;  2XQR B;  3BNF A;  2ZAF A;  3TZ0 A;  2C12 A;  4V26 A;  3TZ4 A;  3LGQ A;  1EGE A;  3D9G A;  2YGW A;  1RJ4 A;  3D9E A;  3P4T A;  1OAH A;  1PI1 A;  2F6L A;  5B5W A;  3D2R A;  4LQQ B;  2ZKJ A;  4E00 A;  3BNG A;  3UU9 A;  3VKH A;  1XFW A;  4JIZ A;  5K3H A;  1SIQ A;  2OEV A;  5J6A A;  4F0X A;  2E80 A;  4V25 A;  1T9G A;  2FP2 A;  5J71 A;  3EON A;  2YYL A;  1LVC A;  3C2P A;  2Q8H A;  2JBS A;  1Y0V A;  2QR4 A;  4L3Z A;  1R2J A;  2R0N A;  1XFY A;  1Y8P A;  1K93 A;  4L3X A;  1W07 A;  1U8V A;  2E81 A;  2EBH X;  2PG0 A;  4HKS A;  3AFE A;  4E01 A;  3BNH A;  3C46 A;  3II9 A;  1GKX A;  1K8T A;  2CJ5 A;  2EBF X;  4AKG A;  4HKR A;  1IVH A;  4WJY A;  1GJV A;  3GQT A;  2A1T A;  1X8Z A;  2XS8 A;  4HR3 A;  1R3B A;  3C3L A;  2YYK A;  2CJ4 A;  4Q5B A;  2YYM A;  3HWC A;  3TZ5 A;  4AKI A;  3TZ2 A;  2R02 A;  5K3G A;  2YYI A;  3D9D A;  5EZ3 A;  4X28 A;  1UDY A;  3SCE A;  2R03 A;  3EOM A;  5BRK A;  3DJL A;  1X90 A;  3PFD A;  3SF6 A;  4Q5C A;  3Q22 A;  4Q17 A;  4W9U A;  4O5M A;  1Y8N A;  1K90 A;  5K3J A;  5GJW E;  4MP7 A;  3S7W A;  3VAD A;  2YYJ A;  4Q1O A;  5B6B A;  4KTO A;  2EBA A;  2UXW A;  2JBR A;  1S26 A;  1Y8O A;  3FCJ A;  5K3I A;  4MPC A;  5M4N A;  1QDB A;  5M4P A;  5M4M A;  4DZY A;  4L3Y A;  5GJV E; 
#chains in the Genus database with same CATH homology
 2RF7 A;  4IV6 A;  3BNJ A;  1FS9 A;  2OR0 A;  2OT4 A;  3AFF A;  4OO2 A;  2D29 A;  3LG1 A;  4KCF A;  3OIB A;  2DVL A;  1JQI A;  2IX5 A;  3MDD A;  3MPJ A;  3F29 A;  1BUC A;  1EGC A;  4L1F A;  3X0Y A;  4XVX A;  1GU6 A;  2VR0 A;  3SWO A;  4P13 A;  3TTB A;  3NF4 A;  4JEK A;  4N5F A;  3RKH A;  3GNC A;  2VIG A;  3FO3 A;  4M9A A;  3OWM A;  3D9F A;  4Q4U A;  3L1T A;  4ZXV A;  4G5E A;  2REH A;  3MKH A;  3B96 A;  2RFQ A;  2CX9 A;  3MPI A;  3TOR A;  4ZYJ A;  2R0M A;  2RDZ A;  3GM6 A;  2JBT A;  3SXQ A;  4Q0T A;  1WS9 A;  4IRN A;  4L38 A;  2YYG A;  4DOY A;  1SIR A;  2C0U A;  2Z1Q A;  2DDH A;  3UBR A;  4NXL A;  2ZO5 A;  3M9V A;  2FON A;  4U83 A;  1FS7 A;  1IS2 A;  3R7K A;  3D6B A;  1UKW A;  4X28 C;  2JIF A;  2J7A A;  1EGD A;  2IX6 A;  3X0X A;  3MXL A;  1FS8 A;  3D1I A;  2WBI A;  1RX0 A;  3MMO A;  4RM7 A;  3OWA A;  3MDE A;  3BNF A;  2ZAF A;  2C12 A;  3LGQ A;  1EGE A;  3D9G A;  3D9E A;  3P4T A;  1OAH A;  3BNG A;  3UU9 A;  5K3H A;  1SIQ A;  2E80 A;  1T9G A;  3EON A;  2YYL A;  2JBS A;  4L3Z A;  1R2J A;  2R0N A;  4L3X A;  1W07 A;  1U8V A;  2E81 A;  2PG0 A;  3AFE A;  3BNH A;  3II9 A;  1IVH A;  4WJY A;  3GQT A;  2A1T A;  4HR3 A;  2YYK A;  4Q5B A;  2YYM A;  3HWC A;  5K3G A;  2YYI A;  3D9D A;  4X28 A;  1UDY A;  3SCE A;  3EOM A;  3PFD A;  3SF6 A;  4Q5C A;  4Q17 A;  4W9U A;  4O5M A;  5K3J A;  3S7W A;  2YYJ A;  4Q1O A;  4KTO A;  2EBA A;  2UXW A;  2JBR A;  3FCJ A;  5K3I A;  1QDB A;  4L3Y A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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