4JEKA

Structure of dibenzothiophene monooxygenase (dszc) from rhodococcus erythropolis
Total Genus 148
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
148
sequence length
399
structure length
399
Chain Sequence
DPVAVARGLAEKWRATAVERDRAGGSATAEREDLRASGLLSLLVPREYGGWGADWPTAIEVVREIAAADGSLGHLFGYHLTNAPMIELIGSQEQEEHLYTQIAQNNWWTGNASSENNSHVLDWKVSATPTEDGGYVLNGTKHFCSGAKGSDLLFVFGVVQDDSPQQGAIIAAAIPTSRAGVTPNDDWAAIGMRQTDSGSTDFHNVKVEPDEVLGAPNAFVLAFIQSERGSLFAPIAQLIFANVYLGIAHGALDAAREYTRTQARPWTPAGIQQATEDPYTIRSYGEFTIALQGADAAAREAAHLLQTVWDKGDALTPEDRGELMVKVSGVKALATNAALNISSGVFEVIGARGTHPRYGFDRFWRNVRTHSLHDPVSYKIADVGKHTLNGQYPIPGFTS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords Dibenzothiophene desulfurization enzyme C
publication title Crystallization and preliminary structural analysis of dibenzothiophene monooxygenase (DszC) from Rhodococcus erythropolis
pubmed doi rcsb
source organism Rhodococcus sp.
total genus 148
structure length 399
sequence length 399
chains with identical sequence B, C, D, E, F, G, H
ec nomenclature
pdb deposition date 2013-02-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02770 Acyl-CoA_dh_M Acyl-CoA dehydrogenase, middle domain
A PF02771 Acyl-CoA_dh_N Acyl-CoA dehydrogenase, N-terminal domain
A PF08028 Acyl-CoA_dh_2 Acyl-CoA dehydrogenase, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.540.10 Mainly Alpha Orthogonal Bundle Butyryl-Coa Dehydrogenase, subunit A; domain 1 Acyl-CoA dehydrogenase/oxidase, N-terminal domain 4jekA01
1.20.140.10 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A; domain 3 Butyryl-CoA Dehydrogenase, subunit A, domain 3 4jekA03
2.40.110.10 Mainly Beta Beta Barrel Butyryl-CoA Dehydrogenase, subunit A; domain 2 Butyryl-CoA Dehydrogenase, subunit A, domain 2 4jekA02
1FS9A 4P13A 2YYLA 2JBRA 3GQTA 4Q17A 3UBRA 4NXLA 5K3IA 3PFDA 2WBIA 4KTOA 1WS9A 3D9GA 3OWMA 3D1IA 3EONA 2OR0A 1RX0A 1EGEA 3TORA 2E80A 3LGQA 3MMOA 1GU6A 3L1TA 4ZYJA 1IS2A 5K3HA 3P4TA 4ZXVA 1SIQA 3OWAA 1EGDA 3BNHA 2Z1QA 2JIFA 1JQIA 1T9GA 1UDYA 3SXQA 3FO3A 1FS8A 3OIBA 4IRNA 2E81A 4Q0TA 3NF4A 2VIGA 3MPIA 3X0YA 3BNJA 3D6BA 2R0MA 4KCFA 3S7WA 2A1TA 3AFFA 1W07A 1FS7A 3MPJA 4X28C 1OAHA 2RF7A 3F29A 3B96A 1R2JA 2DVLA 4W9UA 4DOYA 4XVXA 2J7AA 3R7KA 3MXLA 1IVHA 2ZAFA 4Q5BA 2RDZA 4L38A 2YYIA 2ZO5A 5K3JA 2YYGA 4U83A 2C12A 2IX6A 4L3XA 2UXWA 4O5MA 1BUCA 2R0NA 1QDBA 5K3GA 2DDHA 3FCJA 4X28A 3RKHA 2IX5A 2JBTA 3EOMA 4IV6A 2OT4A 2D29A 4M9AA 4G5EA 3MKHA 2YYMA 3X0XA 3D9DA 4Q4UA 2CX9A 2C0UA 3BNFA 3UU9A 2EBAA 3SCEA 1UKWA 4RM7A 3AFEA 3M9VA 3TTBA 4OO2A 4WJYA 3SF6A 4JEKA 4Q5CA 2REHA 3D9EA 3D9FA 1EGCA 2FONA 2PG0A 2VR0A 1SIRA 1U8VA 4Q1OA 2YYKA 3GM6A 3MDEA 3II9A 2JBSA 4L1FA 2YYJA 3HWCA 3MDDA 3LG1A 3GNCA 3BNGA 4L3ZA 4N5FA 4L3YA 3SWOA 4HR3A 2RFQA
chains in the Genus database with same CATH superfamily
1FS9A 1Y0VA 2BU5A 4J1VA 4MP2A 1Y8OA 2QR4A 4KSAA 3TZ5A 4MPEA 4AKGA 1XFYA 4P13A 2YYLA 4FF3A 2JBRA 1PK0A 3GQTA 3X29A 4Q17A 3UBRA 4NXLA 1LVCA 5K3IA 1RJ4A 2EBHX 4KS9A 3PFDA 2OJQA 4AKHA 1K93A 1XFXA 4H81A 2WBIA 4KTOA 4DZYA 1WS9A 4JIOA 3DJLA 2BU7A 4MPNA 2ZDXA 4FZ4A 3D9GA 3OWMA 4MP7A 3D1IA 4LQQB 5GJWE 3EONA 2OR0A 2PNRA 1RX0A 1EGEA 4MPCA 3TORA 2E80A 3LGQA 2E0AA 3MMOA 5GJVE 1GU6A 1S26A 3L1TA 4ZYJA 1IS2A 5K3HA 1GKXA 3P4TA 4ZXVA 1SIQA 2CJ7A 3OWAA 2Q8IA 1EGDA 3BNHA 3VKHA 2Z1QA 2JIFA 1JQIA 1T9GA 1UDYA 3SXQA 3FO3A 5BRMA 1FS8A 1Y8PA 3OIBA 4IRNA 2BU6A 2R02A 2E81A 4AKIA 2R03A 4Q0TA 4V25A 3NF4A 2VIGA 1JM6A 3MPIA 3N0RA 3X0YA 2HJNA 2ZDYA 2FP1A 3BNJA 1XFUA 1K90A 1PI1A 2BU2A 2VF1A 3C2PA 3D6BA 1RP3A 2FP2A 1X8ZA 4AI6A 2R0MA 4KCFA 2Q8FA 3C3LA 3Q22A 3S7WA 2A1TA 1RJ1A 3AFFA 1SC5A 1W07A 1FS7A 4H7QA 3TZ2A 3MPJA 4X28C 1OAHA 2RF7A 3F29A 3TZ4A 5J6AA 3B96A 1GKZA 2ZKJA 1SK6A 3TZ0A 1R2JA 2DVLA 4W9UA 4DOYA 5B5VA 2EBFX 4FF4A 4XVXA 2AO2A 2J7AA 3R7KA 4KSFA 4E01A 3MXLA 2LFWA 5B6BA 1IVHA 2ZAFA 2OEVA 4Q5BA 2CJ5A 2RDZA 4L38A 2AZEA 2YYIA 2ZO5A 5K3JA 3CRLA 2YYGA 4U83A 4HKRA 2C12A 4E00A 1Y8NA 2IX6A 4L3XA 2UXWA 4O5MA 1BUCA 2R0NA 1QDBA 1X91A 5K3GA 2DDHA 4FF2A 3FCJA 4X28A 3RKHA 2IX5A 2JBTA 3EOMA 2CJ6A 3Q24A 3C46A 4IV6A 4H85A 2D29A 2OT4A 3U33A 4M9AA 4G5EA 3MKHA 2R05A 2BU8A 2YYMA 3X0XA 2XS8A 5EZ3A 3D9DA 4Q4UA 2CX9A 3CE2A 2F6LA 2YGWA 1XFZA 4QICA 2CJ4A 2C0UA 3BNFA 5M4MA 5M4NA 3UU9A 2EBAA 2PO4A 4JIZA 4HKSA 2XS1A 1UKWA 3KMLA 4RM7A 3SCEA 2EC5A 3AFEA 3M9VA 1GJVA 3TTBA 1XG2B 4OO2A 2OEXA 4WJYA 1XFVA 2Q8GA 2CJ8A 3SF6A 4JEKA 4LQSB 1K8TA 5M4PA 3VADA 4FF1A 2Q8HA 5J71A 1XFWA 4Q5CA 2REHA 3D9EA 3D9FA 1EGCA 2FONA 4V26A 2PG0A 2VR0A 1SIRA 4G97A 1U8VA 4Q1OA 2YYKA 2GBBA 5M4KA 3GM6A 3MDEA 1X90A 5BRKA 3II9A 3VKGA 2JBSA 4F0XA 4L1FA 2YYJA 5B5WA 3HWCA 3MDDA 4E02A 3Q23A 3D2RA 3GNCA 2BTZA 3LG1A 3BNGA 4L3ZA 3CRKA 4N5FA 4P79A 4L3YA 3SWOA 1R3BA 4HR3A 2XQRB 3Q0AA 2RFQA
chains in the Genus database with same CATH topology
1FS9A 4P13A 2YYLA 2JBRA 3GQTA 4Q17A 3UBRA 4NXLA 5K3IA 3PFDA 2WBIA 4KTOA 1WS9A 3D9GA 3OWMA 3D1IA 3EONA 2OR0A 1RX0A 1EGEA 3TORA 2E80A 3LGQA 3MMOA 1GU6A 3L1TA 4ZYJA 1IS2A 5K3HA 3P4TA 4ZXVA 1SIQA 3OWAA 1EGDA 3BNHA 2Z1QA 2JIFA 1JQIA 1T9GA 1UDYA 3SXQA 3FO3A 1FS8A 3OIBA 4IRNA 2E81A 4Q0TA 3NF4A 2VIGA 3MPIA 3X0YA 3BNJA 3D6BA 2R0MA 4KCFA 3S7WA 2A1TA 3AFFA 1W07A 1FS7A 3MPJA 4X28C 1OAHA 2RF7A 3F29A 3B96A 1R2JA 2DVLA 4W9UA 4DOYA 4XVXA 2J7AA 3R7KA 3MXLA 1IVHA 2ZAFA 4Q5BA 2RDZA 4L38A 2YYIA 2ZO5A 5K3JA 2YYGA 4U83A 2C12A 2IX6A 4L3XA 2UXWA 4O5MA 1BUCA 2R0NA 1QDBA 5K3GA 2DDHA 3FCJA 4X28A 3RKHA 2IX5A 2JBTA 3EOMA 4IV6A 2OT4A 2D29A 4M9AA 4G5EA 3MKHA 2YYMA 3X0XA 3D9DA 4Q4UA 2CX9A 2C0UA 3BNFA 3UU9A 2EBAA 3SCEA 1UKWA 4RM7A 3AFEA 3M9VA 3TTBA 4OO2A 4WJYA 3SF6A 4JEKA 4Q5CA 2REHA 3D9EA 3D9FA 1EGCA 2FONA 2PG0A 2VR0A 1SIRA 1U8VA 4Q1OA 2YYKA 3GM6A 3MDEA 3II9A 2JBSA 4L1FA 2YYJA 3HWCA 3MDDA 3LG1A 3GNCA 3BNGA 4L3ZA 4N5FA 4L3YA 3SWOA 4HR3A 2RFQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1FS9 A;  4P13 A;  2YYL A;  2JBR A;  3GQT A;  4Q17 A;  3UBR A;  4NXL A;  5K3I A;  3PFD A;  2WBI A;  4KTO A;  1WS9 A;  3D9G A;  3OWM A;  3D1I A;  3EON A;  2OR0 A;  1RX0 A;  1EGE A;  3TOR A;  2E80 A;  3LGQ A;  3MMO A;  1GU6 A;  3L1T A;  4ZYJ A;  1IS2 A;  5K3H A;  3P4T A;  4ZXV A;  1SIQ A;  3OWA A;  1EGD A;  3BNH A;  2Z1Q A;  2JIF A;  1JQI A;  1T9G A;  1UDY A;  3SXQ A;  3FO3 A;  1FS8 A;  3OIB A;  4IRN A;  2E81 A;  4Q0T A;  3NF4 A;  2VIG A;  3MPI A;  3X0Y A;  3BNJ A;  3D6B A;  2R0M A;  4KCF A;  3S7W A;  2A1T A;  3AFF A;  1W07 A;  1FS7 A;  3MPJ A;  4X28 C;  1OAH A;  2RF7 A;  3F29 A;  3B96 A;  1R2J A;  2DVL A;  4W9U A;  4DOY A;  4XVX A;  2J7A A;  3R7K A;  3MXL A;  1IVH A;  2ZAF A;  4Q5B A;  2RDZ A;  4L38 A;  2YYI A;  2ZO5 A;  5K3J A;  2YYG A;  4U83 A;  2C12 A;  2IX6 A;  4L3X A;  2UXW A;  4O5M A;  1BUC A;  2R0N A;  1QDB A;  5K3G A;  2DDH A;  3FCJ A;  4X28 A;  3RKH A;  2IX5 A;  2JBT A;  3EOM A;  4IV6 A;  2OT4 A;  2D29 A;  4M9A A;  4G5E A;  3MKH A;  2YYM A;  3X0X A;  3D9D A;  4Q4U A;  2CX9 A;  2C0U A;  3BNF A;  3UU9 A;  2EBA A;  3SCE A;  1UKW A;  4RM7 A;  3AFE A;  3M9V A;  3TTB A;  4OO2 A;  4WJY A;  3SF6 A;  4JEK A;  4Q5C A;  2REH A;  3D9E A;  3D9F A;  1EGC A;  2FON A;  2PG0 A;  2VR0 A;  1SIR A;  1U8V A;  4Q1O A;  2YYK A;  3GM6 A;  3MDE A;  3II9 A;  2JBS A;  4L1F A;  2YYJ A;  3HWC A;  3MDD A;  3LG1 A;  3GNC A;  3BNG A;  4L3Z A;  4N5F A;  4L3Y A;  3SWO A;  4HR3 A;  2RFQ A; 
#chains in the Genus database with same CATH topology
 1FS9 A;  1Y0V A;  2BU5 A;  4J1V A;  4MP2 A;  1Y8O A;  2QR4 A;  4KSA A;  3TZ5 A;  4MPE A;  4AKG A;  1XFY A;  4P13 A;  2YYL A;  4FF3 A;  2JBR A;  1PK0 A;  3GQT A;  3X29 A;  4Q17 A;  3UBR A;  4NXL A;  1LVC A;  5K3I A;  1RJ4 A;  2EBH X;  4KS9 A;  3PFD A;  2OJQ A;  4AKH A;  1K93 A;  1XFX A;  4H81 A;  2WBI A;  4KTO A;  4DZY A;  1WS9 A;  4JIO A;  3DJL A;  2BU7 A;  4MPN A;  2ZDX A;  4FZ4 A;  3D9G A;  3OWM A;  4MP7 A;  3D1I A;  4LQQ B;  5GJW E;  3EON A;  2OR0 A;  2PNR A;  1RX0 A;  1EGE A;  4MPC A;  3TOR A;  2E80 A;  3LGQ A;  2E0A A;  3MMO A;  5GJV E;  1GU6 A;  1S26 A;  3L1T A;  4ZYJ A;  1IS2 A;  5K3H A;  1GKX A;  3P4T A;  4ZXV A;  1SIQ A;  2CJ7 A;  3OWA A;  2Q8I A;  1EGD A;  3BNH A;  3VKH A;  2Z1Q A;  2JIF A;  1JQI A;  1T9G A;  1UDY A;  3SXQ A;  3FO3 A;  5BRM A;  1FS8 A;  1Y8P A;  3OIB A;  4IRN A;  2BU6 A;  2R02 A;  2E81 A;  4AKI A;  2R03 A;  4Q0T A;  4V25 A;  3NF4 A;  2VIG A;  1JM6 A;  3MPI A;  3N0R A;  3X0Y A;  2HJN A;  2ZDY A;  2FP1 A;  3BNJ A;  1XFU A;  1K90 A;  1PI1 A;  2BU2 A;  2VF1 A;  3C2P A;  3D6B A;  1RP3 A;  2FP2 A;  1X8Z A;  4AI6 A;  2R0M A;  4KCF A;  2Q8F A;  3C3L A;  3Q22 A;  3S7W A;  2A1T A;  1RJ1 A;  3AFF A;  1SC5 A;  1W07 A;  1FS7 A;  4H7Q A;  3TZ2 A;  3MPJ A;  4X28 C;  1OAH A;  2RF7 A;  3F29 A;  3TZ4 A;  5J6A A;  3B96 A;  1GKZ A;  2ZKJ A;  1SK6 A;  3TZ0 A;  1R2J A;  2DVL A;  4W9U A;  4DOY A;  5B5V A;  2EBF X;  4FF4 A;  4XVX A;  2AO2 A;  2J7A A;  3R7K A;  4KSF A;  4E01 A;  3MXL A;  2LFW A;  5B6B A;  1IVH A;  2ZAF A;  2OEV A;  4Q5B A;  2CJ5 A;  2RDZ A;  4L38 A;  2AZE A;  2YYI A;  2ZO5 A;  5K3J A;  3CRL A;  2YYG A;  4U83 A;  4HKR A;  2C12 A;  4E00 A;  1Y8N A;  2IX6 A;  4L3X A;  2UXW A;  4O5M A;  1BUC A;  2R0N A;  1QDB A;  1X91 A;  5K3G A;  2DDH A;  4FF2 A;  3FCJ A;  4X28 A;  3RKH A;  2IX5 A;  2JBT A;  3EOM A;  2CJ6 A;  3Q24 A;  3C46 A;  4IV6 A;  4H85 A;  2D29 A;  2OT4 A;  3U33 A;  4M9A A;  4G5E A;  3MKH A;  2R05 A;  2BU8 A;  2YYM A;  3X0X A;  2XS8 A;  5EZ3 A;  3D9D A;  4Q4U A;  2CX9 A;  3CE2 A;  2F6L A;  2YGW A;  1XFZ A;  4QIC A;  2CJ4 A;  2C0U A;  3BNF A;  5M4M A;  5M4N A;  3UU9 A;  2EBA A;  2PO4 A;  4JIZ A;  4HKS A;  2XS1 A;  1UKW A;  3KML A;  4RM7 A;  3SCE A;  2EC5 A;  3AFE A;  3M9V A;  1GJV A;  3TTB A;  1XG2 B;  4OO2 A;  2OEX A;  4WJY A;  1XFV A;  2Q8G A;  2CJ8 A;  3SF6 A;  4JEK A;  4LQS B;  1K8T A;  5M4P A;  3VAD A;  4FF1 A;  2Q8H A;  5J71 A;  1XFW A;  4Q5C A;  2REH A;  3D9E A;  3D9F A;  1EGC A;  2FON A;  4V26 A;  2PG0 A;  2VR0 A;  1SIR A;  4G97 A;  1U8V A;  4Q1O A;  2YYK A;  2GBB A;  5M4K A;  3GM6 A;  3MDE A;  1X90 A;  5BRK A;  3II9 A;  3VKG A;  2JBS A;  4F0X A;  4L1F A;  2YYJ A;  5B5W A;  3HWC A;  3MDD A;  4E02 A;  3Q23 A;  3D2R A;  3GNC A;  2BTZ A;  3LG1 A;  3BNG A;  4L3Z A;  3CRK A;  4N5F A;  4P79 A;  4L3Y A;  3SWO A;  1R3B A;  4HR3 A;  2XQR B;  3Q0A A;  2RFQ A; 
#chains in the Genus database with same CATH homology
 1FS9 A;  4P13 A;  2YYL A;  2JBR A;  3GQT A;  4Q17 A;  3UBR A;  4NXL A;  5K3I A;  3PFD A;  2WBI A;  4KTO A;  1WS9 A;  3D9G A;  3OWM A;  3D1I A;  3EON A;  2OR0 A;  1RX0 A;  1EGE A;  3TOR A;  2E80 A;  3LGQ A;  3MMO A;  1GU6 A;  3L1T A;  4ZYJ A;  1IS2 A;  5K3H A;  3P4T A;  4ZXV A;  1SIQ A;  3OWA A;  1EGD A;  3BNH A;  2Z1Q A;  2JIF A;  1JQI A;  1T9G A;  1UDY A;  3SXQ A;  3FO3 A;  1FS8 A;  3OIB A;  4IRN A;  2E81 A;  4Q0T A;  3NF4 A;  2VIG A;  3MPI A;  3X0Y A;  3BNJ A;  3D6B A;  2R0M A;  4KCF A;  3S7W A;  2A1T A;  3AFF A;  1W07 A;  1FS7 A;  3MPJ A;  4X28 C;  1OAH A;  2RF7 A;  3F29 A;  3B96 A;  1R2J A;  2DVL A;  4W9U A;  4DOY A;  4XVX A;  2J7A A;  3R7K A;  3MXL A;  1IVH A;  2ZAF A;  4Q5B A;  2RDZ A;  4L38 A;  2YYI A;  2ZO5 A;  5K3J A;  2YYG A;  4U83 A;  2C12 A;  2IX6 A;  4L3X A;  2UXW A;  4O5M A;  1BUC A;  2R0N A;  1QDB A;  5K3G A;  2DDH A;  3FCJ A;  4X28 A;  3RKH A;  2IX5 A;  2JBT A;  3EOM A;  4IV6 A;  2OT4 A;  2D29 A;  4M9A A;  4G5E A;  3MKH A;  2YYM A;  3X0X A;  3D9D A;  4Q4U A;  2CX9 A;  2C0U A;  3BNF A;  3UU9 A;  2EBA A;  3SCE A;  1UKW A;  4RM7 A;  3AFE A;  3M9V A;  3TTB A;  4OO2 A;  4WJY A;  3SF6 A;  4JEK A;  4Q5C A;  2REH A;  3D9E A;  3D9F A;  1EGC A;  2FON A;  2PG0 A;  2VR0 A;  1SIR A;  1U8V A;  4Q1O A;  2YYK A;  3GM6 A;  3MDE A;  3II9 A;  2JBS A;  4L1F A;  2YYJ A;  3HWC A;  3MDD A;  3LG1 A;  3GNC A;  3BNG A;  4L3Z A;  4N5F A;  4L3Y A;  3SWO A;  4HR3 A;  2RFQ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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