4JEKA

Structure of dibenzothiophene monooxygenase (dszc) from rhodococcus erythropolis
Total Genus 148
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
148
sequence length
399
structure length
399
Chain Sequence
DPVAVARGLAEKWRATAVERDRAGGSATAEREDLRASGLLSLLVPREYGGWGADWPTAIEVVREIAAADGSLGHLFGYHLTNAPMIELIGSQEQEEHLYTQIAQNNWWTGNASSENNSHVLDWKVSATPTEDGGYVLNGTKHFCSGAKGSDLLFVFGVVQDDSPQQGAIIAAAIPTSRAGVTPNDDWAAIGMRQTDSGSTDFHNVKVEPDEVLGAPNAFVLAFIQSERGSLFAPIAQLIFANVYLGIAHGALDAAREYTRTQARPWTPAGIQQATEDPYTIRSYGEFTIALQGADAAAREAAHLLQTVWDKGDALTPEDRGELMVKVSGVKALATNAALNISSGVFEVIGARGTHPRYGFDRFWRNVRTHSLHDPVSYKIADVGKHTLNGQYPIPGFTS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Dibenzothiophene desulfurization enzyme C
publication title Crystallization and preliminary structural analysis of dibenzothiophene monooxygenase (DszC) from Rhodococcus erythropolis
pubmed doi rcsb
source organism Rhodococcus sp.
molecule tags Oxidoreductase
total genus 148
structure length 399
sequence length 399
chains with identical sequence B, C, D, E, F, G, H
ec nomenclature
pdb deposition date 2013-02-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02770 Acyl-CoA_dh_M Acyl-CoA dehydrogenase, middle domain
A PF02771 Acyl-CoA_dh_N Acyl-CoA dehydrogenase, N-terminal domain
A PF08028 Acyl-CoA_dh_2 Acyl-CoA dehydrogenase, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.540.10 Mainly Alpha Orthogonal Bundle Butyryl-Coa Dehydrogenase, subunit A; domain 1 Acyl-CoA dehydrogenase/oxidase, N-terminal domain 4jekA01
1.20.140.10 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A; domain 3 Butyryl-CoA Dehydrogenase, subunit A, domain 3 4jekA03
2.40.110.10 Mainly Beta Beta Barrel Butyryl-CoA Dehydrogenase, subunit A; domain 2 Butyryl-CoA Dehydrogenase, subunit A, domain 2 4jekA02
1FS8A 3EOMA 2YYKA 4G5EA 1SIRA 3MMOA 3SXQA 3GM6A 3D6BA 4L38A 2E81A 2D29A 3BNFA 3B96A 2OT4A 2Z1QA 4O5MA 1JQIA 3MDDA 4X28A 5K3JA 5K3IA 4Q5CA 4JEKA 3OWAA 1IS2A 2DVLA 2YYMA 2VR0A 2JBSA 3MDEA 2YYJA 2C12A 4HR3A 3MPIA 3SCEA 2VIGA 2WBIA 4Q4UA 3UU9A 4IV6A 4ZYJA 3PFDA 3TTBA 1QDBA 2PG0A 4RM7A 4Q0TA 3SWOA 2RDZA 3R7KA 3HWCA 4U83A 4OO2A 3X0XA 2EBAA 3D1IA 2ZAFA 3D9EA 2UXWA 4L3XA 3GNCA 4KCFA 1FS7A 1EGEA 3OWMA 2JBTA 3MXLA 4W9UA 3LGQA 4Q1OA 2CX9A 4M9AA 4N5FA 3TORA 3D9DA 4L3ZA 2R0NA 1T9GA 3NF4A 3AFEA 3L1TA 1RX0A 4Q5BA 3MKHA 3BNGA 4DOYA 2RF7A 1SIQA 2R0MA 5K3HA 2OR0A 2A1TA 1OAHA 1U8VA 4ZXVA 3SF6A 2JIFA 3RKHA 3BNJA 1GU6A 2RFQA 4X28C 3FO3A 1BUCA 3EONA 1W07A 4L1FA 2ZO5A 1R2JA 2YYIA 2DDHA 2YYLA 3II9A 1IVHA 1EGCA 1UDYA 2JBRA 3OIBA 3BNHA 3UBRA 2FONA 3S7WA 3MPJA 3AFFA 2IX6A 1UKWA 3D9FA 2C0UA 3LG1A 1WS9A 4IRNA 3X0YA 4P13A 3FCJA 5K3GA 2YYGA 3F29A 2IX5A 1FS9A 3GQTA 2E80A 3D9GA 4L3YA 4NXLA 4XVXA 4Q17A 2REHA 3P4TA 3M9VA 4WJYA 4KTOA 2J7AA 1EGDA
chains in the Genus database with same CATH superfamily
4HKSA 1FS8A 2HJNA 2VF1A 3TZ2A 1LVCA 2ZDYA 3EOMA 2YYKA 2FP2A 4G5EA 2PO4A 1SIRA 3MMOA 3CRKA 3GM6A 3SXQA 3D6BA 1RJ1A 4AKHA 4L38A 2OEXA 2ZKJA 4AI6A 1SC5A 2OJQA 2E81A 2D29A 3BNFA 3B96A 1S26A 5B5WA 1XFUA 2OT4A 2BU2A 2Z1QA 4O5MA 1JQIA 3MDDA 4X28A 5K3JA 5K3IA 1K90A 4JEKA 2CJ6A 3OWAA 4FF2A 1IS2A 4AKGA 3C46A 2DVLA 2YYMA 3C3LA 2FP1A 1GKZA 2VR0A 2JBSA 2CJ7A 3MDEA 3VADA 2OEVA 2YYJA 3CE2A 2C12A 4H7QA 4HR3A 3MPIA 3SCEA 2CJ4A 2VIGA 2WBIA 4Q4UA 5J6AA 3UU9A 5M4KA 1XFYA 4IV6A 1X91A 4ZYJA 2BU6A 3PFDA 2ZDXA 2XS1A 4MPNA 3TTBA 4FF3A 1QDBA 2PG0A 4RM7A 5GJWE 4Q0TA 3Q24A 1Y8OA 3SWOA 3Q0AA 2R02A 2RDZA 4H85A 3R7KA 4KS9A 3TZ0A 3HWCA 4U83A 4J1VA 3X0XA 2YGWA 4OO2A 2Q8HA 2EBAA 5BRKA 4F0XA 3D1IA 2ZAFA 3D9EA 2UXWA 4L3XA 2Q8IA 3GNCA 4KCFA 1FS7A 1EGEA 2CJ5A 3OWMA 2JBTA 3MXLA 4W9UA 3LGQA 4Q1OA 2CX9A 4M9AA 3N0RA 1X8ZA 4N5FA 1XFXA 4G97A 1PK0A 3TORA 3D9DA 4L3ZA 4FF4A 2R0NA 1T9GA 3NF4A 4MPCA 2PNRA 3AFEA 3KMLA 3L1TA 2CJ8A 1GJVA 1RX0A 4Q5BA 3TZ4A 3MKHA 3BNGA 2R03A 4MP7A 2QR4A 1XG2B 4JIOA 4DZYA 1PI1A 3DJLA 3U33A 4DOYA 2RF7A 1X90A 4Q5CA 1SIQA 2R0MA 2E0AA 4LQQB 3D2RA 4E00A 5K3HA 2OR0A 2A1TA 1OAHA 2LFWA 1U8VA 4ZXVA 1R3BA 1Y8PA 4KSAA 4AKIA 3SF6A 2JIFA 3RKHA 3BNJA 1GU6A 3VKHA 2RFQA 5M4PA 4X28C 3FO3A 1XFVA 1BUCA 3C2PA 4LQSB 1JM6A 4QICA 3EONA 1W07A 4JIZA 4L1FA 2ZO5A 1R2JA 2YYIA 2EC5A 2BU5A 2DDHA 2YYLA 3CRLA 5M4MA 1GKXA 3II9A 1K8TA 3VKGA 5B6BA 1IVHA 1EGCA 2GBBA 2Q8FA 2AO2A 1SK6A 2F6LA 4V25A 1UDYA 2JBRA 3OIBA 2EBHX 3BNHA 5B5VA 3UBRA 2FONA 3S7WA 3MPJA 3AFFA 2IX6A 2XS8A 1UKWA 3D9FA 1XFWA 4MP2A 4MPEA 4P79A 1K93A 5GJVE 2EBFX 5EZ3A 2C0UA 3LG1A 1WS9A 3Q23A 5J71A 4IRNA 1RJ4A 4E02A 3X0YA 3X29A 4P13A 3FCJA 5K3GA 2AZEA 3TZ5A 2R05A 2YYGA 3F29A 2IX5A 2BTZA 2BU8A 2XQRB 4HKRA 4KSFA 1FS9A 4H81A 1Y8NA 3GQTA 2E80A 3D9GA 4L3YA 2Q8GA 4NXLA 4XVXA 2BU7A 2REHA 3P4TA 4Q17A 4FF1A 3M9VA 4WJYA 1XFZA 1Y0VA 4KTOA 4FZ4A 5M4NA 4V26A 1RP3A 5BRMA 2J7AA 4E01A 3Q22A 1EGDA
chains in the Genus database with same CATH topology
1FS8A 3EOMA 2YYKA 4G5EA 1SIRA 3MMOA 3SXQA 3GM6A 3D6BA 4L38A 2E81A 2D29A 3BNFA 3B96A 2OT4A 2Z1QA 4O5MA 1JQIA 3MDDA 4X28A 5K3JA 5K3IA 4Q5CA 4JEKA 3OWAA 1IS2A 2DVLA 2YYMA 2VR0A 2JBSA 3MDEA 2YYJA 2C12A 4HR3A 3MPIA 3SCEA 2VIGA 2WBIA 4Q4UA 3UU9A 4IV6A 4ZYJA 3PFDA 3TTBA 1QDBA 2PG0A 4RM7A 4Q0TA 3SWOA 2RDZA 3R7KA 3HWCA 4U83A 4OO2A 3X0XA 2EBAA 3D1IA 2ZAFA 3D9EA 2UXWA 4L3XA 3GNCA 4KCFA 1FS7A 1EGEA 3OWMA 2JBTA 3MXLA 4W9UA 3LGQA 4Q1OA 2CX9A 4M9AA 4N5FA 3TORA 3D9DA 4L3ZA 2R0NA 1T9GA 3NF4A 3AFEA 3L1TA 1RX0A 4Q5BA 3MKHA 3BNGA 4DOYA 2RF7A 1SIQA 2R0MA 5K3HA 2OR0A 2A1TA 1OAHA 1U8VA 4ZXVA 3SF6A 2JIFA 3RKHA 3BNJA 1GU6A 2RFQA 4X28C 3FO3A 1BUCA 3EONA 1W07A 4L1FA 2ZO5A 1R2JA 2YYIA 2DDHA 2YYLA 3II9A 1IVHA 1EGCA 1UDYA 2JBRA 3OIBA 3BNHA 3UBRA 2FONA 3S7WA 3MPJA 3AFFA 2IX6A 1UKWA 3D9FA 2C0UA 3LG1A 1WS9A 4IRNA 3X0YA 4P13A 3FCJA 5K3GA 2YYGA 3F29A 2IX5A 1FS9A 3GQTA 2E80A 3D9GA 4L3YA 4NXLA 4XVXA 4Q17A 2REHA 3P4TA 3M9VA 4WJYA 4KTOA 2J7AA 1EGDA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1FS8 A;  3EOM A;  2YYK A;  4G5E A;  1SIR A;  3MMO A;  3SXQ A;  3GM6 A;  3D6B A;  4L38 A;  2E81 A;  2D29 A;  3BNF A;  3B96 A;  2OT4 A;  2Z1Q A;  4O5M A;  1JQI A;  3MDD A;  4X28 A;  5K3J A;  5K3I A;  4Q5C A;  4JEK A;  3OWA A;  1IS2 A;  2DVL A;  2YYM A;  2VR0 A;  2JBS A;  3MDE A;  2YYJ A;  2C12 A;  4HR3 A;  3MPI A;  3SCE A;  2VIG A;  2WBI A;  4Q4U A;  3UU9 A;  4IV6 A;  4ZYJ A;  3PFD A;  3TTB A;  1QDB A;  2PG0 A;  4RM7 A;  4Q0T A;  3SWO A;  2RDZ A;  3R7K A;  3HWC A;  4U83 A;  4OO2 A;  3X0X A;  2EBA A;  3D1I A;  2ZAF A;  3D9E A;  2UXW A;  4L3X A;  3GNC A;  4KCF A;  1FS7 A;  1EGE A;  3OWM A;  2JBT A;  3MXL A;  4W9U A;  3LGQ A;  4Q1O A;  2CX9 A;  4M9A A;  4N5F A;  3TOR A;  3D9D A;  4L3Z A;  2R0N A;  1T9G A;  3NF4 A;  3AFE A;  3L1T A;  1RX0 A;  4Q5B A;  3MKH A;  3BNG A;  4DOY A;  2RF7 A;  1SIQ A;  2R0M A;  5K3H A;  2OR0 A;  2A1T A;  1OAH A;  1U8V A;  4ZXV A;  3SF6 A;  2JIF A;  3RKH A;  3BNJ A;  1GU6 A;  2RFQ A;  4X28 C;  3FO3 A;  1BUC A;  3EON A;  1W07 A;  4L1F A;  2ZO5 A;  1R2J A;  2YYI A;  2DDH A;  2YYL A;  3II9 A;  1IVH A;  1EGC A;  1UDY A;  2JBR A;  3OIB A;  3BNH A;  3UBR A;  2FON A;  3S7W A;  3MPJ A;  3AFF A;  2IX6 A;  1UKW A;  3D9F A;  2C0U A;  3LG1 A;  1WS9 A;  4IRN A;  3X0Y A;  4P13 A;  3FCJ A;  5K3G A;  2YYG A;  3F29 A;  2IX5 A;  1FS9 A;  3GQT A;  2E80 A;  3D9G A;  4L3Y A;  4NXL A;  4XVX A;  4Q17 A;  2REH A;  3P4T A;  3M9V A;  4WJY A;  4KTO A;  2J7A A;  1EGD A; 
#chains in the Genus database with same CATH topology
 4HKS A;  1FS8 A;  2HJN A;  2VF1 A;  3TZ2 A;  1LVC A;  2ZDY A;  3EOM A;  2YYK A;  2FP2 A;  4G5E A;  2PO4 A;  1SIR A;  3MMO A;  3CRK A;  3GM6 A;  3SXQ A;  3D6B A;  1RJ1 A;  4AKH A;  4L38 A;  2OEX A;  2ZKJ A;  4AI6 A;  1SC5 A;  2OJQ A;  2E81 A;  2D29 A;  3BNF A;  3B96 A;  1S26 A;  5B5W A;  1XFU A;  2OT4 A;  2BU2 A;  2Z1Q A;  4O5M A;  1JQI A;  3MDD A;  4X28 A;  5K3J A;  5K3I A;  1K90 A;  4JEK A;  2CJ6 A;  3OWA A;  4FF2 A;  1IS2 A;  4AKG A;  3C46 A;  2DVL A;  2YYM A;  3C3L A;  2FP1 A;  1GKZ A;  2VR0 A;  2JBS A;  2CJ7 A;  3MDE A;  3VAD A;  2OEV A;  2YYJ A;  3CE2 A;  2C12 A;  4H7Q A;  4HR3 A;  3MPI A;  3SCE A;  2CJ4 A;  2VIG A;  2WBI A;  4Q4U A;  5J6A A;  3UU9 A;  5M4K A;  1XFY A;  4IV6 A;  1X91 A;  4ZYJ A;  2BU6 A;  3PFD A;  2ZDX A;  2XS1 A;  4MPN A;  3TTB A;  4FF3 A;  1QDB A;  2PG0 A;  4RM7 A;  5GJW E;  4Q0T A;  3Q24 A;  1Y8O A;  3SWO A;  3Q0A A;  2R02 A;  2RDZ A;  4H85 A;  3R7K A;  4KS9 A;  3TZ0 A;  3HWC A;  4U83 A;  4J1V A;  3X0X A;  2YGW A;  4OO2 A;  2Q8H A;  2EBA A;  5BRK A;  4F0X A;  3D1I A;  2ZAF A;  3D9E A;  2UXW A;  4L3X A;  2Q8I A;  3GNC A;  4KCF A;  1FS7 A;  1EGE A;  2CJ5 A;  3OWM A;  2JBT A;  3MXL A;  4W9U A;  3LGQ A;  4Q1O A;  2CX9 A;  4M9A A;  3N0R A;  1X8Z A;  4N5F A;  1XFX A;  4G97 A;  1PK0 A;  3TOR A;  3D9D A;  4L3Z A;  4FF4 A;  2R0N A;  1T9G A;  3NF4 A;  4MPC A;  2PNR A;  3AFE A;  3KML A;  3L1T A;  2CJ8 A;  1GJV A;  1RX0 A;  4Q5B A;  3TZ4 A;  3MKH A;  3BNG A;  2R03 A;  4MP7 A;  2QR4 A;  1XG2 B;  4JIO A;  4DZY A;  1PI1 A;  3DJL A;  3U33 A;  4DOY A;  2RF7 A;  1X90 A;  4Q5C A;  1SIQ A;  2R0M A;  2E0A A;  4LQQ B;  3D2R A;  4E00 A;  5K3H A;  2OR0 A;  2A1T A;  1OAH A;  2LFW A;  1U8V A;  4ZXV A;  1R3B A;  1Y8P A;  4KSA A;  4AKI A;  3SF6 A;  2JIF A;  3RKH A;  3BNJ A;  1GU6 A;  3VKH A;  2RFQ A;  5M4P A;  4X28 C;  3FO3 A;  1XFV A;  1BUC A;  3C2P A;  4LQS B;  1JM6 A;  4QIC A;  3EON A;  1W07 A;  4JIZ A;  4L1F A;  2ZO5 A;  1R2J A;  2YYI A;  2EC5 A;  2BU5 A;  2DDH A;  2YYL A;  3CRL A;  5M4M A;  1GKX A;  3II9 A;  1K8T A;  3VKG A;  5B6B A;  1IVH A;  1EGC A;  2GBB A;  2Q8F A;  2AO2 A;  1SK6 A;  2F6L A;  4V25 A;  1UDY A;  2JBR A;  3OIB A;  2EBH X;  3BNH A;  5B5V A;  3UBR A;  2FON A;  3S7W A;  3MPJ A;  3AFF A;  2IX6 A;  2XS8 A;  1UKW A;  3D9F A;  1XFW A;  4MP2 A;  4MPE A;  4P79 A;  1K93 A;  5GJV E;  2EBF X;  5EZ3 A;  2C0U A;  3LG1 A;  1WS9 A;  3Q23 A;  5J71 A;  4IRN A;  1RJ4 A;  4E02 A;  3X0Y A;  3X29 A;  4P13 A;  3FCJ A;  5K3G A;  2AZE A;  3TZ5 A;  2R05 A;  2YYG A;  3F29 A;  2IX5 A;  2BTZ A;  2BU8 A;  2XQR B;  4HKR A;  4KSF A;  1FS9 A;  4H81 A;  1Y8N A;  3GQT A;  2E80 A;  3D9G A;  4L3Y A;  2Q8G A;  4NXL A;  4XVX A;  2BU7 A;  2REH A;  3P4T A;  4Q17 A;  4FF1 A;  3M9V A;  4WJY A;  1XFZ A;  1Y0V A;  4KTO A;  4FZ4 A;  5M4N A;  4V26 A;  1RP3 A;  5BRM A;  2J7A A;  4E01 A;  3Q22 A;  1EGD A; 
#chains in the Genus database with same CATH homology
 1FS8 A;  3EOM A;  2YYK A;  4G5E A;  1SIR A;  3MMO A;  3SXQ A;  3GM6 A;  3D6B A;  4L38 A;  2E81 A;  2D29 A;  3BNF A;  3B96 A;  2OT4 A;  2Z1Q A;  4O5M A;  1JQI A;  3MDD A;  4X28 A;  5K3J A;  5K3I A;  4Q5C A;  4JEK A;  3OWA A;  1IS2 A;  2DVL A;  2YYM A;  2VR0 A;  2JBS A;  3MDE A;  2YYJ A;  2C12 A;  4HR3 A;  3MPI A;  3SCE A;  2VIG A;  2WBI A;  4Q4U A;  3UU9 A;  4IV6 A;  4ZYJ A;  3PFD A;  3TTB A;  1QDB A;  2PG0 A;  4RM7 A;  4Q0T A;  3SWO A;  2RDZ A;  3R7K A;  3HWC A;  4U83 A;  4OO2 A;  3X0X A;  2EBA A;  3D1I A;  2ZAF A;  3D9E A;  2UXW A;  4L3X A;  3GNC A;  4KCF A;  1FS7 A;  1EGE A;  3OWM A;  2JBT A;  3MXL A;  4W9U A;  3LGQ A;  4Q1O A;  2CX9 A;  4M9A A;  4N5F A;  3TOR A;  3D9D A;  4L3Z A;  2R0N A;  1T9G A;  3NF4 A;  3AFE A;  3L1T A;  1RX0 A;  4Q5B A;  3MKH A;  3BNG A;  4DOY A;  2RF7 A;  1SIQ A;  2R0M A;  5K3H A;  2OR0 A;  2A1T A;  1OAH A;  1U8V A;  4ZXV A;  3SF6 A;  2JIF A;  3RKH A;  3BNJ A;  1GU6 A;  2RFQ A;  4X28 C;  3FO3 A;  1BUC A;  3EON A;  1W07 A;  4L1F A;  2ZO5 A;  1R2J A;  2YYI A;  2DDH A;  2YYL A;  3II9 A;  1IVH A;  1EGC A;  1UDY A;  2JBR A;  3OIB A;  3BNH A;  3UBR A;  2FON A;  3S7W A;  3MPJ A;  3AFF A;  2IX6 A;  1UKW A;  3D9F A;  2C0U A;  3LG1 A;  1WS9 A;  4IRN A;  3X0Y A;  4P13 A;  3FCJ A;  5K3G A;  2YYG A;  3F29 A;  2IX5 A;  1FS9 A;  3GQT A;  2E80 A;  3D9G A;  4L3Y A;  4NXL A;  4XVX A;  4Q17 A;  2REH A;  3P4T A;  3M9V A;  4WJY A;  4KTO A;  2J7A A;  1EGD A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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