4P13A

Medium chain acyl-coa dehydrogenase, k304e mutant
Total Genus 146
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
146
sequence length
387
structure length
387
Chain Sequence
LGFSFEFTEQQKEFQATARKFAREEIIPVAAEYDKTGEYPVPLIRRAWELGLMNTHIPENCGGLGLGTFDACLISEELAYGCTGVQTAIEGNSLGQMPIIIAGNDQQKKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARSDPDPKAPANKAFTGFIVEADTPGIQIGRKELNMGQRCSDTRGIVFEDVKVPKENVLIGDGAGFKVAMGAFDKTRPVVAAGAVGLAQRALDEATKYALERKTFGKLLVEHQAISFMLAEMAMEVELARMSYQRAAWEVDSGRRNTYYASIAKAFAGDIANQLATDAVQILGGNGFNTEYPVEKLMRDAKIYQIYEGTSQIQRLIVAREHIDKYKN
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords Medium-chain specific acyl-CoA dehydrogenase, mitochondrial
publication title Medium chain acyl-CoA dehydrogenase, K304E mutant
rcsb
source organism Homo sapiens
total genus 146
structure length 387
sequence length 387
chains with identical sequence B, C, D
ec nomenclature ec 1.3.8.7: Medium-chain acyl-CoA dehydrogenase.
pdb deposition date 2014-02-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00441 Acyl-CoA_dh_1 Acyl-CoA dehydrogenase, C-terminal domain
A PF02770 Acyl-CoA_dh_M Acyl-CoA dehydrogenase, middle domain
A PF02771 Acyl-CoA_dh_N Acyl-CoA dehydrogenase, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.540.10 Mainly Alpha Orthogonal Bundle Butyryl-Coa Dehydrogenase, subunit A; domain 1 Acyl-CoA dehydrogenase/oxidase, N-terminal domain 4p13A01
1.20.140.10 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A; domain 3 Butyryl-CoA Dehydrogenase, subunit A, domain 3 4p13A03
2.40.110.10 Mainly Beta Beta Barrel Butyryl-CoA Dehydrogenase, subunit A; domain 2 Butyryl-CoA Dehydrogenase, subunit A, domain 2 4p13A02
1UDYA 2JBSA 3NF4A 1FS9A 4N5FA 4DOYA 1OAHA 1UKWA 3GM6A 4U83A 3MKHA 2JBTA 2VIGA 2REHA 3MDEA 4O5MA 3MDDA 4JEKA 1U8VA 2YYLA 2OT4A 3D9GA 2YYMA 2UXWA 4L3ZA 3TTBA 4IRNA 3BNFA 3EOMA 3D9FA 2ZO5A 3MMOA 4Q5BA 3SWOA 3SCEA 4OO2A 4Q5CA 2PG0A 2JBRA 2Z1QA 4P13A 2YYKA 3EONA 4XVXA 4ZYJA 5K3IA 3B96A 3RKHA 1SIQA 1R2JA 1FS8A 2E80A 1BUCA 1JQIA 2C12A 3D9EA 4Q0TA 3II9A 3UBRA 1QDBA 2C0UA 3MPJA 4WJYA 3BNHA 2FONA 2D29A 2IX5A 1W07A 2RDZA 3D1IA 3LG1A 2WBIA 3AFFA 3LGQA 4G5EA 2OR0A 1EGCA 5K3HA 2R0MA 2ZAFA 4X28A 2DVLA 4Q1OA 3AFEA 3OIBA 2YYIA 1SIRA 2CX9A 2YYGA 1WS9A 1FS7A 1IVHA 2VR0A 4L38A 2R0NA 1T9GA 4ZXVA 3BNJA 3GQTA 2RFQA 2EBAA 1EGEA 3PFDA 3SXQA 3MPIA 4KCFA 3F29A 5K3GA 4Q4UA 1IS2A 2IX6A 3GNCA 3R7KA 3L1TA 2DDHA 1RX0A 3P4TA 2J7AA 4RM7A 4NXLA 5K3JA 1GU6A 3FO3A 3OWMA 1EGDA 4IV6A 3SF6A 3S7WA 4L1FA 3FCJA 2RF7A 4L3XA 2A1TA 3MXLA 4KTOA 4M9AA 4HR3A 3X0YA 2YYJA 3D9DA 3OWAA 3D6BA 2E81A 4L3YA 3HWCA 3BNGA 2JIFA 4Q17A 4X28C 3UU9A 4W9UA 3X0XA 3M9VA 3TORA
chains in the Genus database with same CATH superfamily
1UDYA 2ZKJA 2Q8GA 5J6AA 2JBSA 4QICA 3C3LA 3NF4A 1FS9A 4FF2A 2CJ4A 1GJVA 2AO2A 4N5FA 4DOYA 3Q22A 5GJWE 1OAHA 1UKWA 3GM6A 4MPNA 2OEVA 4U83A 2BU7A 3MKHA 2JBTA 3TZ4A 5GJVE 1Y8PA 2VIGA 2REHA 4HKSA 5BRKA 3MDEA 4O5MA 3MDDA 2OEXA 4JEKA 4LQSB 1U8VA 2CJ6A 2YYLA 2EBHX 5M4KA 2OT4A 3D9GA 4LQQB 1S26A 2YYMA 1Y8OA 5B6BA 2UXWA 4KSAA 4L3ZA 3TORA 3TTBA 4IRNA 3Q23A 4H81A 2Q8IA 3BNFA 2BU5A 1GKXA 3EOMA 3D9FA 1GKZA 2PNRA 2ZO5A 4MP2A 4V26A 5M4NA 3C2PA 3MMOA 4E02A 2ZDYA 4Q5BA 5BRMA 3SWOA 3SCEA 4OO2A 2R05A 4DZYA 5J71A 1Y0VA 4Q5CA 1K8TA 2FP1A 2PG0A 2JBRA 1X8ZA 2Z1QA 4P13A 2YYKA 3EONA 1XFYA 3X29A 4XVXA 2CJ8A 5B5WA 4ZYJA 5K3IA 1XFZA 2EBFX 3B96A 2XQRB 1SIQA 1R2JA 2GBBA 1K90A 1RJ4A 3RKHA 3VKHA 1FS8A 2R02A 2E80A 1BUCA 4FF1A 1JQIA 2CJ7A 3TZ2A 1Y8NA 1XFWA 2C12A 3D9EA 4Q0TA 3II9A 4F0XA 4MPEA 3UBRA 1QDBA 1XFXA 2C0UA 3MPJA 1PI1A 4WJYA 1RP3A 1XG2B 3BNHA 2FONA 2D29A 2IX5A 1W07A 2E0AA 2RDZA 2BTZA 2OJQA 2ZDXA 3D1IA 3LG1A 2BU8A 2XS1A 4H85A 2WBIA 4KS9A 3AFFA 3N0RA 3LGQA 4G5EA 4MP7A 3TZ5A 2OR0A 1RJ1A 2VF1A 1EGCA 5K3HA 2EC5A 1K93A 2AZEA 2QR4A 2R0MA 1XFUA 2ZAFA 4AI6A 4X28A 2DVLA 4KSFA 4Q1OA 3AFEA 3OIBA 2YYIA 4P79A 1SIRA 2CX9A 2YYGA 2BU6A 4HKRA 1WS9A 1FS7A 3TZ0A 1IVHA 2VR0A 3C46A 4L38A 5EZ3A 2R0NA 1T9GA 4ZXVA 3BNJA 5B5VA 3GQTA 5M4PA 2RFQA 2EBAA 1EGEA 3PFDA 1XFVA 2XS8A 3Q24A 3SXQA 3MPIA 4KCFA 2FP2A 3F29A 4V25A 3U33A 2R03A 5K3GA 1PK0A 1IS2A 2HJNA 4Q4UA 2IX6A 3GNCA 4J1VA 3VADA 3R7KA 3L1TA 4JIOA 4AKHA 3DJLA 1X91A 4H7QA 2DDHA 1JM6A 1RX0A 3P4TA 1SK6A 4RM7A 2J7AA 3CRLA 4NXLA 5K3JA 1GU6A 3D2RA 3FO3A 3OWMA 4E00A 1EGDA 4IV6A 3KMLA 4AKIA 4FF4A 3SF6A 3S7WA 4L1FA 3FCJA 2LFWA 3Q0AA 3VKGA 2PO4A 2RF7A 4FZ4A 2A1TA 1R3BA 4L3XA 2Q8FA 1LVCA 3MXLA 4KTOA 5M4MA 4M9AA 3CE2A 2Q8HA 4HR3A 3X0YA 4AKGA 1X90A 2YYJA 2YGWA 3D9DA 3OWAA 4MPCA 3D6BA 2E81A 2F6LA 4FF3A 2BU2A 4G97A 4L3YA 3CRKA 3HWCA 3BNGA 1SC5A 2JIFA 4Q17A 4X28C 3UU9A 4E01A 2CJ5A 4W9UA 3X0XA 3M9VA 4JIZA
chains in the Genus database with same CATH topology
1UDYA 2JBSA 3NF4A 1FS9A 4N5FA 4DOYA 1OAHA 1UKWA 3GM6A 4U83A 3MKHA 2JBTA 2VIGA 2REHA 3MDEA 4O5MA 3MDDA 4JEKA 1U8VA 2YYLA 2OT4A 3D9GA 2YYMA 2UXWA 4L3ZA 3TTBA 4IRNA 3BNFA 3EOMA 3D9FA 2ZO5A 3MMOA 4Q5BA 3SWOA 3SCEA 4OO2A 4Q5CA 2PG0A 2JBRA 2Z1QA 4P13A 2YYKA 3EONA 4XVXA 4ZYJA 5K3IA 3B96A 3RKHA 1SIQA 1R2JA 1FS8A 2E80A 1BUCA 1JQIA 2C12A 3D9EA 4Q0TA 3II9A 3UBRA 1QDBA 2C0UA 3MPJA 4WJYA 3BNHA 2FONA 2D29A 2IX5A 1W07A 2RDZA 3D1IA 3LG1A 2WBIA 3AFFA 3LGQA 4G5EA 2OR0A 1EGCA 5K3HA 2R0MA 2ZAFA 4X28A 2DVLA 4Q1OA 3AFEA 3OIBA 2YYIA 1SIRA 2CX9A 2YYGA 1WS9A 1FS7A 1IVHA 2VR0A 4L38A 2R0NA 1T9GA 4ZXVA 3BNJA 3GQTA 2RFQA 2EBAA 1EGEA 3PFDA 3SXQA 3MPIA 4KCFA 3F29A 5K3GA 4Q4UA 1IS2A 2IX6A 3GNCA 3R7KA 3L1TA 2DDHA 1RX0A 3P4TA 2J7AA 4RM7A 4NXLA 5K3JA 1GU6A 3FO3A 3OWMA 1EGDA 4IV6A 3SF6A 3S7WA 4L1FA 3FCJA 2RF7A 4L3XA 2A1TA 3MXLA 4KTOA 4M9AA 4HR3A 3X0YA 2YYJA 3D9DA 3OWAA 3D6BA 2E81A 4L3YA 3HWCA 3BNGA 2JIFA 4Q17A 4X28C 3UU9A 4W9UA 3X0XA 3M9VA 3TORA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1UDY A;  2JBS A;  3NF4 A;  1FS9 A;  4N5F A;  4DOY A;  1OAH A;  1UKW A;  3GM6 A;  4U83 A;  3MKH A;  2JBT A;  2VIG A;  2REH A;  3MDE A;  4O5M A;  3MDD A;  4JEK A;  1U8V A;  2YYL A;  2OT4 A;  3D9G A;  2YYM A;  2UXW A;  4L3Z A;  3TTB A;  4IRN A;  3BNF A;  3EOM A;  3D9F A;  2ZO5 A;  3MMO A;  4Q5B A;  3SWO A;  3SCE A;  4OO2 A;  4Q5C A;  2PG0 A;  2JBR A;  2Z1Q A;  4P13 A;  2YYK A;  3EON A;  4XVX A;  4ZYJ A;  5K3I A;  3B96 A;  3RKH A;  1SIQ A;  1R2J A;  1FS8 A;  2E80 A;  1BUC A;  1JQI A;  2C12 A;  3D9E A;  4Q0T A;  3II9 A;  3UBR A;  1QDB A;  2C0U A;  3MPJ A;  4WJY A;  3BNH A;  2FON A;  2D29 A;  2IX5 A;  1W07 A;  2RDZ A;  3D1I A;  3LG1 A;  2WBI A;  3AFF A;  3LGQ A;  4G5E A;  2OR0 A;  1EGC A;  5K3H A;  2R0M A;  2ZAF A;  4X28 A;  2DVL A;  4Q1O A;  3AFE A;  3OIB A;  2YYI A;  1SIR A;  2CX9 A;  2YYG A;  1WS9 A;  1FS7 A;  1IVH A;  2VR0 A;  4L38 A;  2R0N A;  1T9G A;  4ZXV A;  3BNJ A;  3GQT A;  2RFQ A;  2EBA A;  1EGE A;  3PFD A;  3SXQ A;  3MPI A;  4KCF A;  3F29 A;  5K3G A;  4Q4U A;  1IS2 A;  2IX6 A;  3GNC A;  3R7K A;  3L1T A;  2DDH A;  1RX0 A;  3P4T A;  2J7A A;  4RM7 A;  4NXL A;  5K3J A;  1GU6 A;  3FO3 A;  3OWM A;  1EGD A;  4IV6 A;  3SF6 A;  3S7W A;  4L1F A;  3FCJ A;  2RF7 A;  4L3X A;  2A1T A;  3MXL A;  4KTO A;  4M9A A;  4HR3 A;  3X0Y A;  2YYJ A;  3D9D A;  3OWA A;  3D6B A;  2E81 A;  4L3Y A;  3HWC A;  3BNG A;  2JIF A;  4Q17 A;  4X28 C;  3UU9 A;  4W9U A;  3X0X A;  3M9V A;  3TOR A; 
#chains in the Genus database with same CATH topology
 1UDY A;  2ZKJ A;  2Q8G A;  5J6A A;  2JBS A;  4QIC A;  3C3L A;  3NF4 A;  1FS9 A;  4FF2 A;  2CJ4 A;  1GJV A;  2AO2 A;  4N5F A;  4DOY A;  3Q22 A;  5GJW E;  1OAH A;  1UKW A;  3GM6 A;  4MPN A;  2OEV A;  4U83 A;  2BU7 A;  3MKH A;  2JBT A;  3TZ4 A;  5GJV E;  1Y8P A;  2VIG A;  2REH A;  4HKS A;  5BRK A;  3MDE A;  4O5M A;  3MDD A;  2OEX A;  4JEK A;  4LQS B;  1U8V A;  2CJ6 A;  2YYL A;  2EBH X;  5M4K A;  2OT4 A;  3D9G A;  4LQQ B;  1S26 A;  2YYM A;  1Y8O A;  5B6B A;  2UXW A;  4KSA A;  4L3Z A;  3TOR A;  3TTB A;  4IRN A;  3Q23 A;  4H81 A;  2Q8I A;  3BNF A;  2BU5 A;  1GKX A;  3EOM A;  3D9F A;  1GKZ A;  2PNR A;  2ZO5 A;  4MP2 A;  4V26 A;  5M4N A;  3C2P A;  3MMO A;  4E02 A;  2ZDY A;  4Q5B A;  5BRM A;  3SWO A;  3SCE A;  4OO2 A;  2R05 A;  4DZY A;  5J71 A;  1Y0V A;  4Q5C A;  1K8T A;  2FP1 A;  2PG0 A;  2JBR A;  1X8Z A;  2Z1Q A;  4P13 A;  2YYK A;  3EON A;  1XFY A;  3X29 A;  4XVX A;  2CJ8 A;  5B5W A;  4ZYJ A;  5K3I A;  1XFZ A;  2EBF X;  3B96 A;  2XQR B;  1SIQ A;  1R2J A;  2GBB A;  1K90 A;  1RJ4 A;  3RKH A;  3VKH A;  1FS8 A;  2R02 A;  2E80 A;  1BUC A;  4FF1 A;  1JQI A;  2CJ7 A;  3TZ2 A;  1Y8N A;  1XFW A;  2C12 A;  3D9E A;  4Q0T A;  3II9 A;  4F0X A;  4MPE A;  3UBR A;  1QDB A;  1XFX A;  2C0U A;  3MPJ A;  1PI1 A;  4WJY A;  1RP3 A;  1XG2 B;  3BNH A;  2FON A;  2D29 A;  2IX5 A;  1W07 A;  2E0A A;  2RDZ A;  2BTZ A;  2OJQ A;  2ZDX A;  3D1I A;  3LG1 A;  2BU8 A;  2XS1 A;  4H85 A;  2WBI A;  4KS9 A;  3AFF A;  3N0R A;  3LGQ A;  4G5E A;  4MP7 A;  3TZ5 A;  2OR0 A;  1RJ1 A;  2VF1 A;  1EGC A;  5K3H A;  2EC5 A;  1K93 A;  2AZE A;  2QR4 A;  2R0M A;  1XFU A;  2ZAF A;  4AI6 A;  4X28 A;  2DVL A;  4KSF A;  4Q1O A;  3AFE A;  3OIB A;  2YYI A;  4P79 A;  1SIR A;  2CX9 A;  2YYG A;  2BU6 A;  4HKR A;  1WS9 A;  1FS7 A;  3TZ0 A;  1IVH A;  2VR0 A;  3C46 A;  4L38 A;  5EZ3 A;  2R0N A;  1T9G A;  4ZXV A;  3BNJ A;  5B5V A;  3GQT A;  5M4P A;  2RFQ A;  2EBA A;  1EGE A;  3PFD A;  1XFV A;  2XS8 A;  3Q24 A;  3SXQ A;  3MPI A;  4KCF A;  2FP2 A;  3F29 A;  4V25 A;  3U33 A;  2R03 A;  5K3G A;  1PK0 A;  1IS2 A;  2HJN A;  4Q4U A;  2IX6 A;  3GNC A;  4J1V A;  3VAD A;  3R7K A;  3L1T A;  4JIO A;  4AKH A;  3DJL A;  1X91 A;  4H7Q A;  2DDH A;  1JM6 A;  1RX0 A;  3P4T A;  1SK6 A;  4RM7 A;  2J7A A;  3CRL A;  4NXL A;  5K3J A;  1GU6 A;  3D2R A;  3FO3 A;  3OWM A;  4E00 A;  1EGD A;  4IV6 A;  3KML A;  4AKI A;  4FF4 A;  3SF6 A;  3S7W A;  4L1F A;  3FCJ A;  2LFW A;  3Q0A A;  3VKG A;  2PO4 A;  2RF7 A;  4FZ4 A;  2A1T A;  1R3B A;  4L3X A;  2Q8F A;  1LVC A;  3MXL A;  4KTO A;  5M4M A;  4M9A A;  3CE2 A;  2Q8H A;  4HR3 A;  3X0Y A;  4AKG A;  1X90 A;  2YYJ A;  2YGW A;  3D9D A;  3OWA A;  4MPC A;  3D6B A;  2E81 A;  2F6L A;  4FF3 A;  2BU2 A;  4G97 A;  4L3Y A;  3CRK A;  3HWC A;  3BNG A;  1SC5 A;  2JIF A;  4Q17 A;  4X28 C;  3UU9 A;  4E01 A;  2CJ5 A;  4W9U A;  3X0X A;  3M9V A;  4JIZ A; 
#chains in the Genus database with same CATH homology
 1UDY A;  2JBS A;  3NF4 A;  1FS9 A;  4N5F A;  4DOY A;  1OAH A;  1UKW A;  3GM6 A;  4U83 A;  3MKH A;  2JBT A;  2VIG A;  2REH A;  3MDE A;  4O5M A;  3MDD A;  4JEK A;  1U8V A;  2YYL A;  2OT4 A;  3D9G A;  2YYM A;  2UXW A;  4L3Z A;  3TTB A;  4IRN A;  3BNF A;  3EOM A;  3D9F A;  2ZO5 A;  3MMO A;  4Q5B A;  3SWO A;  3SCE A;  4OO2 A;  4Q5C A;  2PG0 A;  2JBR A;  2Z1Q A;  4P13 A;  2YYK A;  3EON A;  4XVX A;  4ZYJ A;  5K3I A;  3B96 A;  3RKH A;  1SIQ A;  1R2J A;  1FS8 A;  2E80 A;  1BUC A;  1JQI A;  2C12 A;  3D9E A;  4Q0T A;  3II9 A;  3UBR A;  1QDB A;  2C0U A;  3MPJ A;  4WJY A;  3BNH A;  2FON A;  2D29 A;  2IX5 A;  1W07 A;  2RDZ A;  3D1I A;  3LG1 A;  2WBI A;  3AFF A;  3LGQ A;  4G5E A;  2OR0 A;  1EGC A;  5K3H A;  2R0M A;  2ZAF A;  4X28 A;  2DVL A;  4Q1O A;  3AFE A;  3OIB A;  2YYI A;  1SIR A;  2CX9 A;  2YYG A;  1WS9 A;  1FS7 A;  1IVH A;  2VR0 A;  4L38 A;  2R0N A;  1T9G A;  4ZXV A;  3BNJ A;  3GQT A;  2RFQ A;  2EBA A;  1EGE A;  3PFD A;  3SXQ A;  3MPI A;  4KCF A;  3F29 A;  5K3G A;  4Q4U A;  1IS2 A;  2IX6 A;  3GNC A;  3R7K A;  3L1T A;  2DDH A;  1RX0 A;  3P4T A;  2J7A A;  4RM7 A;  4NXL A;  5K3J A;  1GU6 A;  3FO3 A;  3OWM A;  1EGD A;  4IV6 A;  3SF6 A;  3S7W A;  4L1F A;  3FCJ A;  2RF7 A;  4L3X A;  2A1T A;  3MXL A;  4KTO A;  4M9A A;  4HR3 A;  3X0Y A;  2YYJ A;  3D9D A;  3OWA A;  3D6B A;  2E81 A;  4L3Y A;  3HWC A;  3BNG A;  2JIF A;  4Q17 A;  4X28 C;  3UU9 A;  4W9U A;  3X0X A;  3M9V A;  3TOR A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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