4XVXA

Crystal structure of an acyl-acp dehydrogenase
Total Genus 148
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
148
sequence length
377
structure length
371
Chain Sequence
SDLDDFRGLLAKAFDERVVAWTAEAEAQERFPRQLIEHLGVCGVFDAKWATDARPDVGKLVELAFALGQLASAGIGVGVSLHDSAIAILRRFGKSDYLRDICDQAIRGAAVLCIGASEESGGSDLQIVETEIRSRDGGFEVRGVKKFVSLSPIADHIMVVARSVDHGNVAVVAVPAAQVSVQTPYRKVGAGPLDTAAVCIDTWVPADALVARAGTGLAAISWGLAHERMSIAGQIAASCQRAIGITLARMMSRRQFGQTLFEHQALRLRMADLQARVDLLRYALHGIAEQGRLELRTAAAVKVTAARLGEEVISECMHIFGGAGYLVDETTLGKWWRDMKLARVGGGTDEVLWELVAAGMTPDHDGYAAVV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords Acyl-[acyl-carrier-protein] dehydrogenase MbtN
publication title A covalent adduct of MbtN, an acyl-ACP dehydrogenase from Mycobacterium tuberculosis, reveals an unusual acyl-binding pocket.
pubmed doi rcsb
source organism Mycobacterium tuberculosis
total genus 148
structure length 371
sequence length 377
chains with identical sequence B
ec nomenclature ec 1.3.99.-:
pdb deposition date 2015-01-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00441 Acyl-CoA_dh_1 Acyl-CoA dehydrogenase, C-terminal domain
A PF02770 Acyl-CoA_dh_M Acyl-CoA dehydrogenase, middle domain
A PF02771 Acyl-CoA_dh_N Acyl-CoA dehydrogenase, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.540.10 Mainly Alpha Orthogonal Bundle Butyryl-Coa Dehydrogenase, subunit A; domain 1 Acyl-CoA dehydrogenase/oxidase, N-terminal domain 4xvxA01
1.20.140.10 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A; domain 3 Butyryl-CoA Dehydrogenase, subunit A, domain 3 4xvxA03
2.40.110.10 Mainly Beta Beta Barrel Butyryl-CoA Dehydrogenase, subunit A; domain 2 Butyryl-CoA Dehydrogenase, subunit A, domain 2 4xvxA02
3B96A 4IRNA 3MPJA 4L38A 2Z1QA 2YYJA 3OWMA 3EOMA 3AFFA 1BUCA 2YYGA 4JEKA 1SIRA 2YYMA 2CX9A 2DDHA 2REHA 2DVLA 2J7AA 1JQIA 2FONA 3FCJA 1WS9A 3SXQA 3PFDA 2JBRA 4OO2A 3TTBA 4WJYA 3TORA 3GQTA 5K3JA 1W07A 3MPIA 1GU6A 3L1TA 4KTOA 3RKHA 2YYIA 2UXWA 3GNCA 2RDZA 1EGEA 1EGCA 1FS7A 2IX5A 2RF7A 3HWCA 2OR0A 4N5FA 4Q5BA 2R0NA 2E80A 3D9FA 4Q4UA 1RX0A 4U83A 1IVHA 1FS9A 2JIFA 3GM6A 5K3GA 3M9VA 3S7WA 3MDDA 3X0YA 3II9A 4L1FA 3BNJA 2E81A 3BNGA 3MDEA 2A1TA 4O5MA 3F29A 2ZO5A 3MXLA 3FO3A 2JBSA 1QDBA 3D9GA 3EONA 4KCFA 3R7KA 1R2JA 2YYLA 3NF4A 3OWAA 4L3XA 1OAHA 3LG1A 4ZYJA 1FS8A 2R0MA 3D6BA 4L3ZA 5K3HA 2C12A 3D1IA 3UBRA 4HR3A 4X28A 2VIGA 3OIBA 3SWOA 5K3IA 1T9GA 2ZAFA 4P13A 2IX6A 4X28C 1U8VA 2EBAA 4Q0TA 1EGDA 2PG0A 3SCEA 3BNFA 4NXLA 3UU9A 4M9AA 4RM7A 4ZXVA 4W9UA 3D9EA 4IV6A 1UDYA 4DOYA 3MMOA 4G5EA 2D29A 2VR0A 3X0XA 4Q5CA 4XVXA 4Q17A 4L3YA 3SF6A 3P4TA 3LGQA 2WBIA 2C0UA 3AFEA 4Q1OA 3D9DA 2OT4A 2JBTA 2RFQA 1UKWA 3MKHA 2YYKA 3BNHA 1IS2A 1SIQA
chains in the Genus database with same CATH superfamily
3B96A 2Q8IA 4IRNA 3MPJA 3TZ5A 2BU7A 4L38A 2Z1QA 5J6AA 3C3LA 2YGWA 2YYJA 2OEXA 3OWMA 3EOMA 1XFZA 2F6LA 3AFFA 1BUCA 2YYGA 2CJ6A 3X29A 5BRKA 4E02A 4KSFA 4JEKA 5M4NA 2GBBA 1SIRA 2CJ4A 2CX9A 2YYMA 2DDHA 2REHA 1SC5A 3TZ2A 5B5WA 5B6BA 2DVLA 4P79A 2J7AA 1JQIA 2FONA 4HKSA 4HKRA 2Q8FA 3FCJA 1WS9A 3SXQA 4AI6A 3PFDA 2JBRA 4OO2A 3KMLA 5B5VA 1X91A 2BTZA 2HJNA 3TTBA 4LQQB 2FP2A 2R05A 4WJYA 3TORA 3GQTA 3DJLA 2CJ8A 5K3JA 2EBHX 1W07A 3MPIA 5M4PA 2FP1A 1GU6A 3L1TA 4KTOA 1XFXA 3RKHA 2YYIA 3CRLA 4G97A 1R3BA 2UXWA 2BU6A 3GNCA 2RDZA 1EGEA 1EGCA 1FS7A 2IX5A 2RF7A 1XFYA 3HWCA 2OR0A 4N5FA 2XS1A 4Q5BA 2R0NA 2E80A 3D9FA 1RJ1A 2E0AA 4Q4UA 1RX0A 4U83A 1K8TA 1Y8NA 4V26A 2QR4A 1IVHA 1FS9A 2JIFA 1GJVA 5K3GA 3M9VA 3GM6A 2BU8A 3MDDA 1PI1A 3S7WA 4AKHA 4V25A 2CJ7A 1JM6A 3X0YA 5M4KA 1Y0VA 3II9A 4L1FA 3BNJA 2E81A 3BNGA 3U33A 3MDEA 2A1TA 2EBFX 4MPEA 5GJVE 4O5MA 2R02A 3CE2A 3F29A 4JIOA 1SK6A 4MPNA 2OJQA 2ZO5A 3MXLA 3VADA 3FO3A 2Q8GA 2JBSA 1QDBA 1S26A 5M4MA 3D9GA 3EONA 4KCFA 3R7KA 4FF1A 1R2JA 2YYLA 3NF4A 2EC5A 3OWAA 2ZDYA 4MP7A 1K93A 4L3XA 1Y8OA 1OAHA 3LG1A 4ZYJA 1FS8A 2R0MA 3D6BA 4L3ZA 5K3HA 1Y8PA 2C12A 3D2RA 3D1IA 4FF2A 2PNRA 3CRKA 2BU5A 5BRMA 3UBRA 4HR3A 1K90A 4X28A 2VIGA 3OIBA 3SWOA 2Q8HA 4F0XA 2PO4A 4H81A 5K3IA 1LVCA 1T9GA 2ZAFA 2ZKJA 2CJ5A 3Q22A 4H85A 4FF3A 4P13A 1X8ZA 2IX6A 4X28C 2ZDXA 4LQSB 4E01A 5GJWE 1U8VA 4DZYA 4J1VA 2EBAA 4MPCA 1EGDA 2PG0A 4Q0TA 4H7QA 3N0RA 3SCEA 3BNFA 3Q23A 4AKGA 2R03A 1RJ4A 4NXLA 3UU9A 4M9AA 4RM7A 4ZXVA 4W9UA 1PK0A 3D9EA 1RP3A 4IV6A 1UDYA 4DOYA 4MP2A 3MMOA 4G5EA 2LFWA 5J71A 2D29A 2VR0A 3X0XA 4Q5CA 4XVXA 3TZ0A 3VKHA 3C46A 4Q17A 4L3YA 2AZEA 4FZ4A 4JIZA 3SF6A 3P4TA 3LGQA 4KSAA 4AKIA 3C2PA 5EZ3A 2WBIA 2BU2A 2C0UA 3AFEA 4KS9A 4Q1OA 3Q0AA 3D9DA 2AO2A 2OT4A 4E00A 2JBTA 3TZ4A 3Q24A 4FF4A 1XFUA 3VKGA 2OEVA 1XG2B 1X90A 2XS8A 1GKXA 1GKZA 1XFVA 4QICA 2RFQA 2XQRB 1UKWA 3MKHA 2VF1A 1XFWA 2YYKA 3BNHA 1IS2A 1SIQA
chains in the Genus database with same CATH topology
3B96A 4IRNA 3MPJA 4L38A 2Z1QA 2YYJA 3OWMA 3EOMA 3AFFA 1BUCA 2YYGA 4JEKA 1SIRA 2YYMA 2CX9A 2DDHA 2REHA 2DVLA 2J7AA 1JQIA 2FONA 3FCJA 1WS9A 3SXQA 3PFDA 2JBRA 4OO2A 3TTBA 4WJYA 3TORA 3GQTA 5K3JA 1W07A 3MPIA 1GU6A 3L1TA 4KTOA 3RKHA 2YYIA 2UXWA 3GNCA 2RDZA 1EGEA 1EGCA 1FS7A 2IX5A 2RF7A 3HWCA 2OR0A 4N5FA 4Q5BA 2R0NA 2E80A 3D9FA 4Q4UA 1RX0A 4U83A 1IVHA 1FS9A 2JIFA 3GM6A 5K3GA 3M9VA 3S7WA 3MDDA 3X0YA 3II9A 4L1FA 3BNJA 2E81A 3BNGA 3MDEA 2A1TA 4O5MA 3F29A 2ZO5A 3MXLA 3FO3A 2JBSA 1QDBA 3D9GA 3EONA 4KCFA 3R7KA 1R2JA 2YYLA 3NF4A 3OWAA 4L3XA 1OAHA 3LG1A 4ZYJA 1FS8A 2R0MA 3D6BA 4L3ZA 5K3HA 2C12A 3D1IA 3UBRA 4HR3A 4X28A 2VIGA 3OIBA 3SWOA 5K3IA 1T9GA 2ZAFA 4P13A 2IX6A 4X28C 1U8VA 2EBAA 4Q0TA 1EGDA 2PG0A 3SCEA 3BNFA 4NXLA 3UU9A 4M9AA 4RM7A 4ZXVA 4W9UA 3D9EA 4IV6A 1UDYA 4DOYA 3MMOA 4G5EA 2D29A 2VR0A 3X0XA 4Q5CA 4XVXA 4Q17A 4L3YA 3SF6A 3P4TA 3LGQA 2WBIA 2C0UA 3AFEA 4Q1OA 3D9DA 2OT4A 2JBTA 2RFQA 1UKWA 3MKHA 2YYKA 3BNHA 1IS2A 1SIQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3B96 A;  4IRN A;  3MPJ A;  4L38 A;  2Z1Q A;  2YYJ A;  3OWM A;  3EOM A;  3AFF A;  1BUC A;  2YYG A;  4JEK A;  1SIR A;  2YYM A;  2CX9 A;  2DDH A;  2REH A;  2DVL A;  2J7A A;  1JQI A;  2FON A;  3FCJ A;  1WS9 A;  3SXQ A;  3PFD A;  2JBR A;  4OO2 A;  3TTB A;  4WJY A;  3TOR A;  3GQT A;  5K3J A;  1W07 A;  3MPI A;  1GU6 A;  3L1T A;  4KTO A;  3RKH A;  2YYI A;  2UXW A;  3GNC A;  2RDZ A;  1EGE A;  1EGC A;  1FS7 A;  2IX5 A;  2RF7 A;  3HWC A;  2OR0 A;  4N5F A;  4Q5B A;  2R0N A;  2E80 A;  3D9F A;  4Q4U A;  1RX0 A;  4U83 A;  1IVH A;  1FS9 A;  2JIF A;  3GM6 A;  5K3G A;  3M9V A;  3S7W A;  3MDD A;  3X0Y A;  3II9 A;  4L1F A;  3BNJ A;  2E81 A;  3BNG A;  3MDE A;  2A1T A;  4O5M A;  3F29 A;  2ZO5 A;  3MXL A;  3FO3 A;  2JBS A;  1QDB A;  3D9G A;  3EON A;  4KCF A;  3R7K A;  1R2J A;  2YYL A;  3NF4 A;  3OWA A;  4L3X A;  1OAH A;  3LG1 A;  4ZYJ A;  1FS8 A;  2R0M A;  3D6B A;  4L3Z A;  5K3H A;  2C12 A;  3D1I A;  3UBR A;  4HR3 A;  4X28 A;  2VIG A;  3OIB A;  3SWO A;  5K3I A;  1T9G A;  2ZAF A;  4P13 A;  2IX6 A;  4X28 C;  1U8V A;  2EBA A;  4Q0T A;  1EGD A;  2PG0 A;  3SCE A;  3BNF A;  4NXL A;  3UU9 A;  4M9A A;  4RM7 A;  4ZXV A;  4W9U A;  3D9E A;  4IV6 A;  1UDY A;  4DOY A;  3MMO A;  4G5E A;  2D29 A;  2VR0 A;  3X0X A;  4Q5C A;  4XVX A;  4Q17 A;  4L3Y A;  3SF6 A;  3P4T A;  3LGQ A;  2WBI A;  2C0U A;  3AFE A;  4Q1O A;  3D9D A;  2OT4 A;  2JBT A;  2RFQ A;  1UKW A;  3MKH A;  2YYK A;  3BNH A;  1IS2 A;  1SIQ A; 
#chains in the Genus database with same CATH topology
 3B96 A;  2Q8I A;  4IRN A;  3MPJ A;  3TZ5 A;  2BU7 A;  4L38 A;  2Z1Q A;  5J6A A;  3C3L A;  2YGW A;  2YYJ A;  2OEX A;  3OWM A;  3EOM A;  1XFZ A;  2F6L A;  3AFF A;  1BUC A;  2YYG A;  2CJ6 A;  3X29 A;  5BRK A;  4E02 A;  4KSF A;  4JEK A;  5M4N A;  2GBB A;  1SIR A;  2CJ4 A;  2CX9 A;  2YYM A;  2DDH A;  2REH A;  1SC5 A;  3TZ2 A;  5B5W A;  5B6B A;  2DVL A;  4P79 A;  2J7A A;  1JQI A;  2FON A;  4HKS A;  4HKR A;  2Q8F A;  3FCJ A;  1WS9 A;  3SXQ A;  4AI6 A;  3PFD A;  2JBR A;  4OO2 A;  3KML A;  5B5V A;  1X91 A;  2BTZ A;  2HJN A;  3TTB A;  4LQQ B;  2FP2 A;  2R05 A;  4WJY A;  3TOR A;  3GQT A;  3DJL A;  2CJ8 A;  5K3J A;  2EBH X;  1W07 A;  3MPI A;  5M4P A;  2FP1 A;  1GU6 A;  3L1T A;  4KTO A;  1XFX A;  3RKH A;  2YYI A;  3CRL A;  4G97 A;  1R3B A;  2UXW A;  2BU6 A;  3GNC A;  2RDZ A;  1EGE A;  1EGC A;  1FS7 A;  2IX5 A;  2RF7 A;  1XFY A;  3HWC A;  2OR0 A;  4N5F A;  2XS1 A;  4Q5B A;  2R0N A;  2E80 A;  3D9F A;  1RJ1 A;  2E0A A;  4Q4U A;  1RX0 A;  4U83 A;  1K8T A;  1Y8N A;  4V26 A;  2QR4 A;  1IVH A;  1FS9 A;  2JIF A;  1GJV A;  5K3G A;  3M9V A;  3GM6 A;  2BU8 A;  3MDD A;  1PI1 A;  3S7W A;  4AKH A;  4V25 A;  2CJ7 A;  1JM6 A;  3X0Y A;  5M4K A;  1Y0V A;  3II9 A;  4L1F A;  3BNJ A;  2E81 A;  3BNG A;  3U33 A;  3MDE A;  2A1T A;  2EBF X;  4MPE A;  5GJV E;  4O5M A;  2R02 A;  3CE2 A;  3F29 A;  4JIO A;  1SK6 A;  4MPN A;  2OJQ A;  2ZO5 A;  3MXL A;  3VAD A;  3FO3 A;  2Q8G A;  2JBS A;  1QDB A;  1S26 A;  5M4M A;  3D9G A;  3EON A;  4KCF A;  3R7K A;  4FF1 A;  1R2J A;  2YYL A;  3NF4 A;  2EC5 A;  3OWA A;  2ZDY A;  4MP7 A;  1K93 A;  4L3X A;  1Y8O A;  1OAH A;  3LG1 A;  4ZYJ A;  1FS8 A;  2R0M A;  3D6B A;  4L3Z A;  5K3H A;  1Y8P A;  2C12 A;  3D2R A;  3D1I A;  4FF2 A;  2PNR A;  3CRK A;  2BU5 A;  5BRM A;  3UBR A;  4HR3 A;  1K90 A;  4X28 A;  2VIG A;  3OIB A;  3SWO A;  2Q8H A;  4F0X A;  2PO4 A;  4H81 A;  5K3I A;  1LVC A;  1T9G A;  2ZAF A;  2ZKJ A;  2CJ5 A;  3Q22 A;  4H85 A;  4FF3 A;  4P13 A;  1X8Z A;  2IX6 A;  4X28 C;  2ZDX A;  4LQS B;  4E01 A;  5GJW E;  1U8V A;  4DZY A;  4J1V A;  2EBA A;  4MPC A;  1EGD A;  2PG0 A;  4Q0T A;  4H7Q A;  3N0R A;  3SCE A;  3BNF A;  3Q23 A;  4AKG A;  2R03 A;  1RJ4 A;  4NXL A;  3UU9 A;  4M9A A;  4RM7 A;  4ZXV A;  4W9U A;  1PK0 A;  3D9E A;  1RP3 A;  4IV6 A;  1UDY A;  4DOY A;  4MP2 A;  3MMO A;  4G5E A;  2LFW A;  5J71 A;  2D29 A;  2VR0 A;  3X0X A;  4Q5C A;  4XVX A;  3TZ0 A;  3VKH A;  3C46 A;  4Q17 A;  4L3Y A;  2AZE A;  4FZ4 A;  4JIZ A;  3SF6 A;  3P4T A;  3LGQ A;  4KSA A;  4AKI A;  3C2P A;  5EZ3 A;  2WBI A;  2BU2 A;  2C0U A;  3AFE A;  4KS9 A;  4Q1O A;  3Q0A A;  3D9D A;  2AO2 A;  2OT4 A;  4E00 A;  2JBT A;  3TZ4 A;  3Q24 A;  4FF4 A;  1XFU A;  3VKG A;  2OEV A;  1XG2 B;  1X90 A;  2XS8 A;  1GKX A;  1GKZ A;  1XFV A;  4QIC A;  2RFQ A;  2XQR B;  1UKW A;  3MKH A;  2VF1 A;  1XFW A;  2YYK A;  3BNH A;  1IS2 A;  1SIQ A; 
#chains in the Genus database with same CATH homology
 3B96 A;  4IRN A;  3MPJ A;  4L38 A;  2Z1Q A;  2YYJ A;  3OWM A;  3EOM A;  3AFF A;  1BUC A;  2YYG A;  4JEK A;  1SIR A;  2YYM A;  2CX9 A;  2DDH A;  2REH A;  2DVL A;  2J7A A;  1JQI A;  2FON A;  3FCJ A;  1WS9 A;  3SXQ A;  3PFD A;  2JBR A;  4OO2 A;  3TTB A;  4WJY A;  3TOR A;  3GQT A;  5K3J A;  1W07 A;  3MPI A;  1GU6 A;  3L1T A;  4KTO A;  3RKH A;  2YYI A;  2UXW A;  3GNC A;  2RDZ A;  1EGE A;  1EGC A;  1FS7 A;  2IX5 A;  2RF7 A;  3HWC A;  2OR0 A;  4N5F A;  4Q5B A;  2R0N A;  2E80 A;  3D9F A;  4Q4U A;  1RX0 A;  4U83 A;  1IVH A;  1FS9 A;  2JIF A;  3GM6 A;  5K3G A;  3M9V A;  3S7W A;  3MDD A;  3X0Y A;  3II9 A;  4L1F A;  3BNJ A;  2E81 A;  3BNG A;  3MDE A;  2A1T A;  4O5M A;  3F29 A;  2ZO5 A;  3MXL A;  3FO3 A;  2JBS A;  1QDB A;  3D9G A;  3EON A;  4KCF A;  3R7K A;  1R2J A;  2YYL A;  3NF4 A;  3OWA A;  4L3X A;  1OAH A;  3LG1 A;  4ZYJ A;  1FS8 A;  2R0M A;  3D6B A;  4L3Z A;  5K3H A;  2C12 A;  3D1I A;  3UBR A;  4HR3 A;  4X28 A;  2VIG A;  3OIB A;  3SWO A;  5K3I A;  1T9G A;  2ZAF A;  4P13 A;  2IX6 A;  4X28 C;  1U8V A;  2EBA A;  4Q0T A;  1EGD A;  2PG0 A;  3SCE A;  3BNF A;  4NXL A;  3UU9 A;  4M9A A;  4RM7 A;  4ZXV A;  4W9U A;  3D9E A;  4IV6 A;  1UDY A;  4DOY A;  3MMO A;  4G5E A;  2D29 A;  2VR0 A;  3X0X A;  4Q5C A;  4XVX A;  4Q17 A;  4L3Y A;  3SF6 A;  3P4T A;  3LGQ A;  2WBI A;  2C0U A;  3AFE A;  4Q1O A;  3D9D A;  2OT4 A;  2JBT A;  2RFQ A;  1UKW A;  3MKH A;  2YYK A;  3BNH A;  1IS2 A;  1SIQ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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