2REHA

Mechanistic and structural analyses of the roles of arg409 and asp402 in the reaction of the flavoprotein nitroalkane oxidase
Total Genus 158
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
158
sequence length
430
structure length
430
Chain Sequence
VDFKLSPSQLEARRHAQAFANTVLTKASAEYSTQKDQLSRFQATRPFYREAVRHGLIKAQVPIPLGGTMESLVHESIILEELFAVEPATSITIVATALGLMPVILCDSPSLQEKFLKPFISGEGEPLASLMHSEPNGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNSGGWDYKGADLACVVCRVSDDPSKPQDPNVDPATQIAVLLVTRETIANNKKDAYQILGEPELAGHITTSGPHTRFTEFHVPHENLLCTPGLKAQGLVETAFAMSAALVGAMAIGTARAAFEEALVFAKSDTRGGSKHIIEHQSVADKLIDCKIRLETSRLLVWKAVTTLEDEALEWKVKLEMAMQTKIYTTDVAVECVIDAMKAVGMKSYAKDMSFPRLLNEVMCYPLFEGGNIGLRRRQMQRVMALEDYEPWAATYGS
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Nitroalkane oxidase
publication title Mechanistic and structural analyses of the roles of Arg409 and Asp402 in the reaction of the flavoprotein nitroalkane oxidase.
pubmed doi rcsb
source organism Fusarium oxysporum
molecule tags Oxidoreductase
total genus 158
structure length 430
sequence length 430
chains with identical sequence B, C, D
ec nomenclature ec 1.7.3.1: Nitroalkane oxidase.
pdb deposition date 2007-09-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00441 Acyl-CoA_dh_1 Acyl-CoA dehydrogenase, C-terminal domain
A PF02771 Acyl-CoA_dh_N Acyl-CoA dehydrogenase, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.540.10 Mainly Alpha Orthogonal Bundle Butyryl-Coa Dehydrogenase, subunit A; domain 1 Acyl-CoA dehydrogenase/oxidase, N-terminal domain 2rehA01
1.20.140.10 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A; domain 3 Butyryl-CoA Dehydrogenase, subunit A, domain 3 2rehA03
2.40.110.10 Mainly Beta Beta Barrel Butyryl-CoA Dehydrogenase, subunit A; domain 2 Butyryl-CoA Dehydrogenase, subunit A, domain 2 2rehA02
3D1IA 2FONA 4P13A 2EBAA 5K3JA 4JEKA 2A1TA 2IX5A 2OR0A 4L3XA 1EGEA 1RX0A 1UKWA 3D9FA 3GNCA 3II9A 2YYIA 2YYGA 4ZYJA 3BNFA 2IX6A 4X28C 3OWMA 3TORA 2E80A 2ZO5A 2CX9A 4W9UA 2JBSA 2Z1QA 3TTBA 4Q5BA 3OIBA 4Q1OA 4IV6A 3S7WA 3FCJA 2YYKA 4XVXA 4O5MA 2YYMA 3FO3A 2E81A 3SF6A 4RM7A 2UXWA 3AFEA 2R0MA 3LGQA 3PFDA 3MPIA 1EGCA 4WJYA 3HWCA 1IVHA 1SIRA 2RFQA 2JIFA 3MPJA 3UBRA 3UU9A 4KTOA 4G5EA 3MKHA 2OT4A 2JBTA 2JBRA 3D9DA 2ZAFA 3EOMA 3P4TA 1QDBA 3B96A 3GQTA 3OWAA 4NXLA 2VR0A 3AFFA 4KCFA 4ZXVA 4U83A 1FS7A 3SXQA 2R0NA 3EONA 4HR3A 3MMOA 2WBIA 3L1TA 2D29A 2C0UA 5K3HA 2DVLA 4DOYA 1SIQA 3MXLA 4X28A 4Q5CA 4N5FA 1OAHA 1R2JA 2YYLA 2RF7A 2J7AA 4L3YA 2PG0A 1GU6A 3SCEA 2REHA 1WS9A 3NF4A 4Q4UA 4Q17A 1IS2A 1JQIA 4Q0TA 3MDDA 3D6BA 2VIGA 2YYJA 4IRNA 3M9VA 3SWOA 3D9EA 2DDHA 1UDYA 4L38A 3RKHA 3BNGA 4OO2A 1FS8A 1EGDA 3X0YA 5K3GA 3F29A 3LG1A 3D9GA 5K3IA 1FS9A 3BNHA 1T9GA 3R7KA 3X0XA 4M9AA 1U8VA 4L3ZA 3BNJA 2RDZA 1BUCA 4L1FA 3MDEA 3GM6A 1W07A 2C12A
chains in the Genus database with same CATH superfamily
1K90A 1R3BA 1Y8OA 3D1IA 2FONA 4P13A 5B6BA 5EZ3A 2XS1A 2EBAA 5K3JA 1X91A 2BU6A 4JEKA 2A1TA 2IX5A 2OR0A 2CJ8A 2EC5A 1RJ1A 4L3XA 1XFUA 1EGEA 1RX0A 1UKWA 3D9FA 3GNCA 3II9A 2YYIA 2YYGA 4ZYJA 3BNFA 2IX6A 4JIZA 4X28C 1SK6A 4E01A 4F0XA 4JIOA 1RP3A 4J1VA 1XFYA 3OWMA 2ZKJA 3KMLA 2E80A 3TORA 4E00A 2ZO5A 2LFWA 2CX9A 4W9UA 2CJ7A 2JBSA 3TZ5A 2Z1QA 1GKZA 2BU5A 4MP7A 3C46A 3TTBA 4Q5BA 2AZEA 2AO2A 3OIBA 3D2RA 4Q1OA 4IV6A 3S7WA 5M4MA 3FCJA 2YYKA 4XVXA 4O5MA 2XQRB 2YYMA 3DJLA 4H7QA 3Q23A 2OEXA 1XFZA 3FO3A 3VKGA 4H85A 2ZDXA 2E81A 3SF6A 2YGWA 1JM6A 4FF1A 4RM7A 2UXWA 3AFEA 4P79A 2R0MA 3LGQA 3PFDA 3MPIA 1EGCA 4WJYA 3HWCA 1IVHA 1SIRA 2RFQA 2R02A 2JIFA 3MPJA 2CJ6A 1PK0A 4H81A 2Q8IA 1K93A 1S26A 2Q8GA 2F6LA 3CRLA 3UBRA 4FF3A 3UU9A 2PO4A 4AKGA 4KTOA 4G5EA 3VADA 3MKHA 3C2PA 2R03A 2JBTA 1K8TA 4G97A 2JBRA 2OT4A 4FF4A 3D9DA 2VF1A 5GJWE 5GJVE 2ZAFA 3EOMA 4V26A 3P4TA 1QDBA 3B96A 3GQTA 3OWAA 4NXLA 2VR0A 2FP1A 4E02A 4MPCA 3TZ2A 4KSFA 3AFFA 4KCFA 4ZXVA 4DZYA 4U83A 3CE2A 1X8ZA 4QICA 1RJ4A 1FS7A 4AKIA 3SXQA 2PNRA 2CJ4A 2R0NA 3C3LA 2EBHX 3EONA 5B5VA 3CRKA 4HR3A 4MP2A 3X29A 3MMOA 2BTZA 2WBIA 3L1TA 5J71A 1XFVA 2BU7A 5B5WA 4FF2A 2FP2A 2D29A 3VKHA 5M4NA 2C0UA 5K3HA 2DVLA 4DOYA 1SIQA 4MPEA 3MXLA 5M4KA 2CJ5A 5BRKA 3U33A 4X28A 4Q5CA 4HKSA 4N5FA 1GKXA 1X90A 5M4PA 2E0AA 1OAHA 4V25A 4AI6A 2XS8A 1R2JA 2OEVA 2YYLA 1XG2B 2RF7A 2J7AA 4L3YA 2PG0A 1GU6A 3SCEA 3Q24A 3Q0AA 2REHA 1WS9A 3NF4A 2GBBA 4KS9A 1XFWA 4Q4UA 2Q8HA 2BU2A 4Q17A 1IS2A 1JQIA 4Q0TA 3MDDA 3D6BA 2VIGA 2YYJA 4LQQB 3Q22A 4IRNA 3M9VA 4HKRA 3SWOA 3D9EA 2QR4A 2DDHA 2R05A 2ZDYA 5J6AA 1UDYA 4L38A 2HJNA 3RKHA 3BNGA 4OO2A 3N0RA 1FS8A 1GJVA 1EGDA 3X0YA 5K3GA 3F29A 3LG1A 4MPNA 3D9GA 5K3IA 1FS9A 1XFXA 2OJQA 3TZ0A 2BU8A 3BNHA 4KSAA 4AKHA 1T9GA 3R7KA 3X0XA 4M9AA 1SC5A 1U8VA 4L3ZA 3BNJA 1Y8PA 3TZ4A 2RDZA 4LQSB 1BUCA 4L1FA 3MDEA 1LVCA 1Y8NA 2Q8FA 1Y0VA 4FZ4A 5BRMA 2EBFX 3GM6A 1W07A 2C12A 1PI1A
chains in the Genus database with same CATH topology
3D1IA 2FONA 4P13A 2EBAA 5K3JA 4JEKA 2A1TA 2IX5A 2OR0A 4L3XA 1EGEA 1RX0A 1UKWA 3D9FA 3GNCA 3II9A 2YYIA 2YYGA 4ZYJA 3BNFA 2IX6A 4X28C 3OWMA 3TORA 2E80A 2ZO5A 2CX9A 4W9UA 2JBSA 2Z1QA 3TTBA 4Q5BA 3OIBA 4Q1OA 4IV6A 3S7WA 3FCJA 2YYKA 4XVXA 4O5MA 2YYMA 3FO3A 2E81A 3SF6A 4RM7A 2UXWA 3AFEA 2R0MA 3LGQA 3PFDA 3MPIA 1EGCA 4WJYA 3HWCA 1IVHA 1SIRA 2RFQA 2JIFA 3MPJA 3UBRA 3UU9A 4KTOA 4G5EA 3MKHA 2OT4A 2JBTA 2JBRA 3D9DA 2ZAFA 3EOMA 3P4TA 1QDBA 3B96A 3GQTA 3OWAA 4NXLA 2VR0A 3AFFA 4KCFA 4ZXVA 4U83A 1FS7A 3SXQA 2R0NA 3EONA 4HR3A 3MMOA 2WBIA 3L1TA 2D29A 2C0UA 5K3HA 2DVLA 4DOYA 1SIQA 3MXLA 4X28A 4Q5CA 4N5FA 1OAHA 1R2JA 2YYLA 2RF7A 2J7AA 4L3YA 2PG0A 1GU6A 3SCEA 2REHA 1WS9A 3NF4A 4Q4UA 4Q17A 1IS2A 1JQIA 4Q0TA 3MDDA 3D6BA 2VIGA 2YYJA 4IRNA 3M9VA 3SWOA 3D9EA 2DDHA 1UDYA 4L38A 3RKHA 3BNGA 4OO2A 1FS8A 1EGDA 3X0YA 5K3GA 3F29A 3LG1A 3D9GA 5K3IA 1FS9A 3BNHA 1T9GA 3R7KA 3X0XA 4M9AA 1U8VA 4L3ZA 3BNJA 2RDZA 1BUCA 4L1FA 3MDEA 3GM6A 1W07A 2C12A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3D1I A;  2FON A;  4P13 A;  2EBA A;  5K3J A;  4JEK A;  2A1T A;  2IX5 A;  2OR0 A;  4L3X A;  1EGE A;  1RX0 A;  1UKW A;  3D9F A;  3GNC A;  3II9 A;  2YYI A;  2YYG A;  4ZYJ A;  3BNF A;  2IX6 A;  4X28 C;  3OWM A;  3TOR A;  2E80 A;  2ZO5 A;  2CX9 A;  4W9U A;  2JBS A;  2Z1Q A;  3TTB A;  4Q5B A;  3OIB A;  4Q1O A;  4IV6 A;  3S7W A;  3FCJ A;  2YYK A;  4XVX A;  4O5M A;  2YYM A;  3FO3 A;  2E81 A;  3SF6 A;  4RM7 A;  2UXW A;  3AFE A;  2R0M A;  3LGQ A;  3PFD A;  3MPI A;  1EGC A;  4WJY A;  3HWC A;  1IVH A;  1SIR A;  2RFQ A;  2JIF A;  3MPJ A;  3UBR A;  3UU9 A;  4KTO A;  4G5E A;  3MKH A;  2OT4 A;  2JBT A;  2JBR A;  3D9D A;  2ZAF A;  3EOM A;  3P4T A;  1QDB A;  3B96 A;  3GQT A;  3OWA A;  4NXL A;  2VR0 A;  3AFF A;  4KCF A;  4ZXV A;  4U83 A;  1FS7 A;  3SXQ A;  2R0N A;  3EON A;  4HR3 A;  3MMO A;  2WBI A;  3L1T A;  2D29 A;  2C0U A;  5K3H A;  2DVL A;  4DOY A;  1SIQ A;  3MXL A;  4X28 A;  4Q5C A;  4N5F A;  1OAH A;  1R2J A;  2YYL A;  2RF7 A;  2J7A A;  4L3Y A;  2PG0 A;  1GU6 A;  3SCE A;  2REH A;  1WS9 A;  3NF4 A;  4Q4U A;  4Q17 A;  1IS2 A;  1JQI A;  4Q0T A;  3MDD A;  3D6B A;  2VIG A;  2YYJ A;  4IRN A;  3M9V A;  3SWO A;  3D9E A;  2DDH A;  1UDY A;  4L38 A;  3RKH A;  3BNG A;  4OO2 A;  1FS8 A;  1EGD A;  3X0Y A;  5K3G A;  3F29 A;  3LG1 A;  3D9G A;  5K3I A;  1FS9 A;  3BNH A;  1T9G A;  3R7K A;  3X0X A;  4M9A A;  1U8V A;  4L3Z A;  3BNJ A;  2RDZ A;  1BUC A;  4L1F A;  3MDE A;  3GM6 A;  1W07 A;  2C12 A; 
#chains in the Genus database with same CATH topology
 1K90 A;  1R3B A;  1Y8O A;  3D1I A;  2FON A;  4P13 A;  5B6B A;  5EZ3 A;  2XS1 A;  2EBA A;  5K3J A;  1X91 A;  2BU6 A;  4JEK A;  2A1T A;  2IX5 A;  2OR0 A;  2CJ8 A;  2EC5 A;  1RJ1 A;  4L3X A;  1XFU A;  1EGE A;  1RX0 A;  1UKW A;  3D9F A;  3GNC A;  3II9 A;  2YYI A;  2YYG A;  4ZYJ A;  3BNF A;  2IX6 A;  4JIZ A;  4X28 C;  1SK6 A;  4E01 A;  4F0X A;  4JIO A;  1RP3 A;  4J1V A;  1XFY A;  3OWM A;  2ZKJ A;  3KML A;  2E80 A;  3TOR A;  4E00 A;  2ZO5 A;  2LFW A;  2CX9 A;  4W9U A;  2CJ7 A;  2JBS A;  3TZ5 A;  2Z1Q A;  1GKZ A;  2BU5 A;  4MP7 A;  3C46 A;  3TTB A;  4Q5B A;  2AZE A;  2AO2 A;  3OIB A;  3D2R A;  4Q1O A;  4IV6 A;  3S7W A;  5M4M A;  3FCJ A;  2YYK A;  4XVX A;  4O5M A;  2XQR B;  2YYM A;  3DJL A;  4H7Q A;  3Q23 A;  2OEX A;  1XFZ A;  3FO3 A;  3VKG A;  4H85 A;  2ZDX A;  2E81 A;  3SF6 A;  2YGW A;  1JM6 A;  4FF1 A;  4RM7 A;  2UXW A;  3AFE A;  4P79 A;  2R0M A;  3LGQ A;  3PFD A;  3MPI A;  1EGC A;  4WJY A;  3HWC A;  1IVH A;  1SIR A;  2RFQ A;  2R02 A;  2JIF A;  3MPJ A;  2CJ6 A;  1PK0 A;  4H81 A;  2Q8I A;  1K93 A;  1S26 A;  2Q8G A;  2F6L A;  3CRL A;  3UBR A;  4FF3 A;  3UU9 A;  2PO4 A;  4AKG A;  4KTO A;  4G5E A;  3VAD A;  3MKH A;  3C2P A;  2R03 A;  2JBT A;  1K8T A;  4G97 A;  2JBR A;  2OT4 A;  4FF4 A;  3D9D A;  2VF1 A;  5GJW E;  5GJV E;  2ZAF A;  3EOM A;  4V26 A;  3P4T A;  1QDB A;  3B96 A;  3GQT A;  3OWA A;  4NXL A;  2VR0 A;  2FP1 A;  4E02 A;  4MPC A;  3TZ2 A;  4KSF A;  3AFF A;  4KCF A;  4ZXV A;  4DZY A;  4U83 A;  3CE2 A;  1X8Z A;  4QIC A;  1RJ4 A;  1FS7 A;  4AKI A;  3SXQ A;  2PNR A;  2CJ4 A;  2R0N A;  3C3L A;  2EBH X;  3EON A;  5B5V A;  3CRK A;  4HR3 A;  4MP2 A;  3X29 A;  3MMO A;  2BTZ A;  2WBI A;  3L1T A;  5J71 A;  1XFV A;  2BU7 A;  5B5W A;  4FF2 A;  2FP2 A;  2D29 A;  3VKH A;  5M4N A;  2C0U A;  5K3H A;  2DVL A;  4DOY A;  1SIQ A;  4MPE A;  3MXL A;  5M4K A;  2CJ5 A;  5BRK A;  3U33 A;  4X28 A;  4Q5C A;  4HKS A;  4N5F A;  1GKX A;  1X90 A;  5M4P A;  2E0A A;  1OAH A;  4V25 A;  4AI6 A;  2XS8 A;  1R2J A;  2OEV A;  2YYL A;  1XG2 B;  2RF7 A;  2J7A A;  4L3Y A;  2PG0 A;  1GU6 A;  3SCE A;  3Q24 A;  3Q0A A;  2REH A;  1WS9 A;  3NF4 A;  2GBB A;  4KS9 A;  1XFW A;  4Q4U A;  2Q8H A;  2BU2 A;  4Q17 A;  1IS2 A;  1JQI A;  4Q0T A;  3MDD A;  3D6B A;  2VIG A;  2YYJ A;  4LQQ B;  3Q22 A;  4IRN A;  3M9V A;  4HKR A;  3SWO A;  3D9E A;  2QR4 A;  2DDH A;  2R05 A;  2ZDY A;  5J6A A;  1UDY A;  4L38 A;  2HJN A;  3RKH A;  3BNG A;  4OO2 A;  3N0R A;  1FS8 A;  1GJV A;  1EGD A;  3X0Y A;  5K3G A;  3F29 A;  3LG1 A;  4MPN A;  3D9G A;  5K3I A;  1FS9 A;  1XFX A;  2OJQ A;  3TZ0 A;  2BU8 A;  3BNH A;  4KSA A;  4AKH A;  1T9G A;  3R7K A;  3X0X A;  4M9A A;  1SC5 A;  1U8V A;  4L3Z A;  3BNJ A;  1Y8P A;  3TZ4 A;  2RDZ A;  4LQS B;  1BUC A;  4L1F A;  3MDE A;  1LVC A;  1Y8N A;  2Q8F A;  1Y0V A;  4FZ4 A;  5BRM A;  2EBF X;  3GM6 A;  1W07 A;  2C12 A;  1PI1 A; 
#chains in the Genus database with same CATH homology
 3D1I A;  2FON A;  4P13 A;  2EBA A;  5K3J A;  4JEK A;  2A1T A;  2IX5 A;  2OR0 A;  4L3X A;  1EGE A;  1RX0 A;  1UKW A;  3D9F A;  3GNC A;  3II9 A;  2YYI A;  2YYG A;  4ZYJ A;  3BNF A;  2IX6 A;  4X28 C;  3OWM A;  3TOR A;  2E80 A;  2ZO5 A;  2CX9 A;  4W9U A;  2JBS A;  2Z1Q A;  3TTB A;  4Q5B A;  3OIB A;  4Q1O A;  4IV6 A;  3S7W A;  3FCJ A;  2YYK A;  4XVX A;  4O5M A;  2YYM A;  3FO3 A;  2E81 A;  3SF6 A;  4RM7 A;  2UXW A;  3AFE A;  2R0M A;  3LGQ A;  3PFD A;  3MPI A;  1EGC A;  4WJY A;  3HWC A;  1IVH A;  1SIR A;  2RFQ A;  2JIF A;  3MPJ A;  3UBR A;  3UU9 A;  4KTO A;  4G5E A;  3MKH A;  2OT4 A;  2JBT A;  2JBR A;  3D9D A;  2ZAF A;  3EOM A;  3P4T A;  1QDB A;  3B96 A;  3GQT A;  3OWA A;  4NXL A;  2VR0 A;  3AFF A;  4KCF A;  4ZXV A;  4U83 A;  1FS7 A;  3SXQ A;  2R0N A;  3EON A;  4HR3 A;  3MMO A;  2WBI A;  3L1T A;  2D29 A;  2C0U A;  5K3H A;  2DVL A;  4DOY A;  1SIQ A;  3MXL A;  4X28 A;  4Q5C A;  4N5F A;  1OAH A;  1R2J A;  2YYL A;  2RF7 A;  2J7A A;  4L3Y A;  2PG0 A;  1GU6 A;  3SCE A;  2REH A;  1WS9 A;  3NF4 A;  4Q4U A;  4Q17 A;  1IS2 A;  1JQI A;  4Q0T A;  3MDD A;  3D6B A;  2VIG A;  2YYJ A;  4IRN A;  3M9V A;  3SWO A;  3D9E A;  2DDH A;  1UDY A;  4L38 A;  3RKH A;  3BNG A;  4OO2 A;  1FS8 A;  1EGD A;  3X0Y A;  5K3G A;  3F29 A;  3LG1 A;  3D9G A;  5K3I A;  1FS9 A;  3BNH A;  1T9G A;  3R7K A;  3X0X A;  4M9A A;  1U8V A;  4L3Z A;  3BNJ A;  2RDZ A;  1BUC A;  4L1F A;  3MDE A;  3GM6 A;  1W07 A;  2C12 A; 
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similar chains in the Genus database (?% sequence similarity)
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#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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