2REHA

Mechanistic and structural analyses of the roles of arg409 and asp402 in the reaction of the flavoprotein nitroalkane oxidase
Total Genus 158
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
158
sequence length
430
structure length
430
Chain Sequence
VDFKLSPSQLEARRHAQAFANTVLTKASAEYSTQKDQLSRFQATRPFYREAVRHGLIKAQVPIPLGGTMESLVHESIILEELFAVEPATSITIVATALGLMPVILCDSPSLQEKFLKPFISGEGEPLASLMHSEPNGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNSGGWDYKGADLACVVCRVSDDPSKPQDPNVDPATQIAVLLVTRETIANNKKDAYQILGEPELAGHITTSGPHTRFTEFHVPHENLLCTPGLKAQGLVETAFAMSAALVGAMAIGTARAAFEEALVFAKSDTRGGSKHIIEHQSVADKLIDCKIRLETSRLLVWKAVTTLEDEALEWKVKLEMAMQTKIYTTDVAVECVIDAMKAVGMKSYAKDMSFPRLLNEVMCYPLFEGGNIGLRRRQMQRVMALEDYEPWAATYGS
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Nitroalkane oxidase
publication title Mechanistic and structural analyses of the roles of Arg409 and Asp402 in the reaction of the flavoprotein nitroalkane oxidase.
pubmed doi rcsb
source organism Fusarium oxysporum
molecule tags Oxidoreductase
total genus 158
structure length 430
sequence length 430
chains with identical sequence B, C, D
ec nomenclature ec 1.7.3.1: Nitroalkane oxidase.
pdb deposition date 2007-09-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00441 Acyl-CoA_dh_1 Acyl-CoA dehydrogenase, C-terminal domain
A PF02771 Acyl-CoA_dh_N Acyl-CoA dehydrogenase, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.540.10 Mainly Alpha Orthogonal Bundle Butyryl-Coa Dehydrogenase, subunit A; domain 1 Acyl-CoA dehydrogenase/oxidase, N-terminal domain 2rehA01
1.20.140.10 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A; domain 3 Butyryl-CoA Dehydrogenase, subunit A, domain 3 2rehA03
2.40.110.10 Mainly Beta Beta Barrel Butyryl-CoA Dehydrogenase, subunit A; domain 2 Butyryl-CoA Dehydrogenase, subunit A, domain 2 2rehA02
4KTOA 3BNGA 4IV6A 3RKHA 1R2JA 3F29A 2R0NA 5K3GA 4OO2A 3FO3A 2DVLA 3FCJA 3B96A 3AFFA 4JEKA 4M9AA 3EONA 1FS9A 2VR0A 3MDEA 3AFEA 2IX5A 3D9DA 3M9VA 2DDHA 4IRNA 3R7KA 4L3YA 1IS2A 4U83A 1EGCA 1SIRA 2JBTA 3TTBA 3GM6A 3MKHA 3L1TA 3PFDA 3HWCA 4Q0TA 3D9EA 3OWMA 3BNJA 2RDZA 3X0YA 4L3ZA 4Q17A 2OT4A 3S7WA 1IVHA 2CX9A 1GU6A 4N5FA 2YYJA 1SIQA 4Q4UA 3D9GA 1FS8A 1FS7A 3BNHA 4Q5BA 1RX0A 1BUCA 2IX6A 4ZXVA 2RF7A 5K3HA 2E80A 1U8VA 4WJYA 3D1IA 3P4TA 2YYLA 1T9GA 1UDYA 3UU9A 1WS9A 4X28C 2YYKA 1EGDA 2C0UA 2ZO5A 2JBSA 3EOMA 3MMOA 2WBIA 4XVXA 3MPIA 1UKWA 4HR3A 1W07A 2FONA 3UBRA 2JBRA 2E81A 3LG1A 4X28A 2REHA 2Z1QA 4Q1OA 4L3XA 4RM7A 4L1FA 3OWAA 3SWOA 4L38A 3OIBA 3BNFA 4KCFA 1OAHA 4G5EA 1EGEA 2OR0A 2R0MA 2C12A 3SCEA 2J7AA 4NXLA 3II9A 2JIFA 3GNCA 3TORA 2YYIA 2ZAFA 1QDBA 2VIGA 3MDDA 3SF6A 2YYGA 3NF4A 3GQTA 3D9FA 2RFQA 3X0XA 4W9UA 2D29A 2EBAA 3MXLA 4DOYA 5K3JA 4Q5CA 1JQIA 3D6BA 3SXQA 2YYMA 3LGQA 2PG0A 3MPJA 2A1TA 2UXWA 4ZYJA 5K3IA 4O5MA 4P13A
chains in the Genus database with same CATH superfamily
4KTOA 3BNGA 2ZKJA 4MPNA 2OJQA 4IV6A 3RKHA 1R2JA 1Y0VA 2GBBA 3F29A 3VKGA 1GJVA 3DJLA 2R0NA 5K3GA 1Y8NA 4E02A 4OO2A 3FO3A 4LQQB 4FF2A 2DVLA 3FCJA 3B96A 3AFFA 2BU8A 3Q22A 4JEKA 4M9AA 5B6BA 3EONA 4H81A 1FS9A 4V25A 4AKGA 2VR0A 3MDEA 3AFEA 2XS8A 2IX5A 5GJWE 4FF3A 3D9DA 3M9VA 4V26A 2DDHA 4IRNA 3R7KA 1GKZA 1IS2A 1K93A 2XS1A 4U83A 3N0RA 2ZDYA 4L3YA 4MP2A 1EGCA 1SIRA 2EC5A 2JBTA 3U33A 2OEXA 3TTBA 3GM6A 1XFUA 2YGWA 3MKHA 2FP2A 3PFDA 3HWCA 3L1TA 2XQRB 3D9EA 3OWMA 4Q0TA 5M4PA 3BNJA 2RDZA 3X0YA 4L3ZA 4Q17A 1SC5A 2R02A 2OT4A 3S7WA 1IVHA 2CX9A 4E00A 4KSAA 1GU6A 4G97A 4N5FA 1Y8OA 2YYJA 4DZYA 2Q8FA 1SIQA 4Q4UA 3D9GA 1FS8A 1FS7A 3BNHA 4Q5BA 2OEVA 1RX0A 2BU2A 1BUCA 2IX6A 4ZXVA 4MPEA 2RF7A 5K3HA 4FF1A 1LVCA 2Q8HA 4HKRA 1XFWA 2E80A 1U8VA 2BU7A 2CJ6A 4LQSB 4WJYA 3D1IA 3P4TA 3D2RA 2YYLA 1K8TA 3CRLA 4KS9A 4FF4A 4MPCA 2ZDXA 3TZ2A 1T9GA 1GKXA 1UDYA 2R05A 3UU9A 1WS9A 4X28C 2YYKA 2Q8IA 3VKHA 1EGDA 2C0UA 2ZO5A 4JIZA 1RP3A 3C2PA 2JBSA 2R03A 3EOMA 1RJ4A 5B5VA 1X8ZA 3TZ0A 2FP1A 5M4MA 4AKHA 3MMOA 1XFYA 2WBIA 4XVXA 1XFXA 4P79A 4AI6A 2AZEA 5M4KA 3MPIA 2LFWA 1UKWA 1S26A 4HR3A 1W07A 2FONA 1XG2B 1Y8PA 3UBRA 2JBRA 4E01A 1PK0A 3Q24A 4AKIA 2E81A 3CE2A 3KMLA 4X28A 3LG1A 5J6AA 3TZ5A 2REHA 3X29A 3Q0AA 2Z1QA 4Q1OA 1PI1A 4L3XA 2BTZA 4RM7A 4L1FA 2CJ4A 2EBHX 4HKSA 3OWAA 3SWOA 2F6LA 5B5WA 4L38A 5J71A 1X91A 2BU6A 3OIBA 2CJ5A 1X90A 2E0AA 2Q8GA 3BNFA 4H85A 4KCFA 1OAHA 4G5EA 4J1VA 2CJ7A 3C46A 2QR4A 3C3LA 1K90A 4H7QA 2AO2A 1R3BA 1EGEA 2OR0A 2BU5A 2R0MA 1SK6A 4MP7A 4QICA 2C12A 1JM6A 2J7AA 2CJ8A 4NXLA 3SCEA 3II9A 2JIFA 3GNCA 4JIOA 5BRMA 2YYIA 3TORA 2ZAFA 1QDBA 2VIGA 3MDDA 3SF6A 2YYGA 3NF4A 3GQTA 3D9FA 2RFQA 3X0XA 4W9UA 1XFZA 3CRKA 5BRKA 1XFVA 2EBFX 2D29A 2EBAA 3MXLA 4DOYA 5GJVE 4F0XA 5K3JA 4Q5CA 1JQIA 1RJ1A 3VADA 3D6BA 3SXQA 2HJNA 3Q23A 4FZ4A 3TZ4A 5M4NA 2VF1A 4KSFA 2YYMA 5EZ3A 2PNRA 2PG0A 2PO4A 3LGQA 3MPJA 2A1TA 2UXWA 4ZYJA 5K3IA 4O5MA 4P13A
chains in the Genus database with same CATH topology
4KTOA 3BNGA 4IV6A 3RKHA 1R2JA 3F29A 2R0NA 5K3GA 4OO2A 3FO3A 2DVLA 3FCJA 3B96A 3AFFA 4JEKA 4M9AA 3EONA 1FS9A 2VR0A 3MDEA 3AFEA 2IX5A 3D9DA 3M9VA 2DDHA 4IRNA 3R7KA 4L3YA 1IS2A 4U83A 1EGCA 1SIRA 2JBTA 3TTBA 3GM6A 3MKHA 3L1TA 3PFDA 3HWCA 4Q0TA 3D9EA 3OWMA 3BNJA 2RDZA 3X0YA 4L3ZA 4Q17A 2OT4A 3S7WA 1IVHA 2CX9A 1GU6A 4N5FA 2YYJA 1SIQA 4Q4UA 3D9GA 1FS8A 1FS7A 3BNHA 4Q5BA 1RX0A 1BUCA 2IX6A 4ZXVA 2RF7A 5K3HA 2E80A 1U8VA 4WJYA 3D1IA 3P4TA 2YYLA 1T9GA 1UDYA 3UU9A 1WS9A 4X28C 2YYKA 1EGDA 2C0UA 2ZO5A 2JBSA 3EOMA 3MMOA 2WBIA 4XVXA 3MPIA 1UKWA 4HR3A 1W07A 2FONA 3UBRA 2JBRA 2E81A 3LG1A 4X28A 2REHA 2Z1QA 4Q1OA 4L3XA 4RM7A 4L1FA 3OWAA 3SWOA 4L38A 3OIBA 3BNFA 4KCFA 1OAHA 4G5EA 1EGEA 2OR0A 2R0MA 2C12A 3SCEA 2J7AA 4NXLA 3II9A 2JIFA 3GNCA 3TORA 2YYIA 2ZAFA 1QDBA 2VIGA 3MDDA 3SF6A 2YYGA 3NF4A 3GQTA 3D9FA 2RFQA 3X0XA 4W9UA 2D29A 2EBAA 3MXLA 4DOYA 5K3JA 4Q5CA 1JQIA 3D6BA 3SXQA 2YYMA 3LGQA 2PG0A 3MPJA 2A1TA 2UXWA 4ZYJA 5K3IA 4O5MA 4P13A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4KTO A;  3BNG A;  4IV6 A;  3RKH A;  1R2J A;  3F29 A;  2R0N A;  5K3G A;  4OO2 A;  3FO3 A;  2DVL A;  3FCJ A;  3B96 A;  3AFF A;  4JEK A;  4M9A A;  3EON A;  1FS9 A;  2VR0 A;  3MDE A;  3AFE A;  2IX5 A;  3D9D A;  3M9V A;  2DDH A;  4IRN A;  3R7K A;  4L3Y A;  1IS2 A;  4U83 A;  1EGC A;  1SIR A;  2JBT A;  3TTB A;  3GM6 A;  3MKH A;  3L1T A;  3PFD A;  3HWC A;  4Q0T A;  3D9E A;  3OWM A;  3BNJ A;  2RDZ A;  3X0Y A;  4L3Z A;  4Q17 A;  2OT4 A;  3S7W A;  1IVH A;  2CX9 A;  1GU6 A;  4N5F A;  2YYJ A;  1SIQ A;  4Q4U A;  3D9G A;  1FS8 A;  1FS7 A;  3BNH A;  4Q5B A;  1RX0 A;  1BUC A;  2IX6 A;  4ZXV A;  2RF7 A;  5K3H A;  2E80 A;  1U8V A;  4WJY A;  3D1I A;  3P4T A;  2YYL A;  1T9G A;  1UDY A;  3UU9 A;  1WS9 A;  4X28 C;  2YYK A;  1EGD A;  2C0U A;  2ZO5 A;  2JBS A;  3EOM A;  3MMO A;  2WBI A;  4XVX A;  3MPI A;  1UKW A;  4HR3 A;  1W07 A;  2FON A;  3UBR A;  2JBR A;  2E81 A;  3LG1 A;  4X28 A;  2REH A;  2Z1Q A;  4Q1O A;  4L3X A;  4RM7 A;  4L1F A;  3OWA A;  3SWO A;  4L38 A;  3OIB A;  3BNF A;  4KCF A;  1OAH A;  4G5E A;  1EGE A;  2OR0 A;  2R0M A;  2C12 A;  3SCE A;  2J7A A;  4NXL A;  3II9 A;  2JIF A;  3GNC A;  3TOR A;  2YYI A;  2ZAF A;  1QDB A;  2VIG A;  3MDD A;  3SF6 A;  2YYG A;  3NF4 A;  3GQT A;  3D9F A;  2RFQ A;  3X0X A;  4W9U A;  2D29 A;  2EBA A;  3MXL A;  4DOY A;  5K3J A;  4Q5C A;  1JQI A;  3D6B A;  3SXQ A;  2YYM A;  3LGQ A;  2PG0 A;  3MPJ A;  2A1T A;  2UXW A;  4ZYJ A;  5K3I A;  4O5M A;  4P13 A; 
#chains in the Genus database with same CATH topology
 4KTO A;  3BNG A;  2ZKJ A;  4MPN A;  2OJQ A;  4IV6 A;  3RKH A;  1R2J A;  1Y0V A;  2GBB A;  3F29 A;  3VKG A;  1GJV A;  3DJL A;  2R0N A;  5K3G A;  1Y8N A;  4E02 A;  4OO2 A;  3FO3 A;  4LQQ B;  4FF2 A;  2DVL A;  3FCJ A;  3B96 A;  3AFF A;  2BU8 A;  3Q22 A;  4JEK A;  4M9A A;  5B6B A;  3EON A;  4H81 A;  1FS9 A;  4V25 A;  4AKG A;  2VR0 A;  3MDE A;  3AFE A;  2XS8 A;  2IX5 A;  5GJW E;  4FF3 A;  3D9D A;  3M9V A;  4V26 A;  2DDH A;  4IRN A;  3R7K A;  1GKZ A;  1IS2 A;  1K93 A;  2XS1 A;  4U83 A;  3N0R A;  2ZDY A;  4L3Y A;  4MP2 A;  1EGC A;  1SIR A;  2EC5 A;  2JBT A;  3U33 A;  2OEX A;  3TTB A;  3GM6 A;  1XFU A;  2YGW A;  3MKH A;  2FP2 A;  3PFD A;  3HWC A;  3L1T A;  2XQR B;  3D9E A;  3OWM A;  4Q0T A;  5M4P A;  3BNJ A;  2RDZ A;  3X0Y A;  4L3Z A;  4Q17 A;  1SC5 A;  2R02 A;  2OT4 A;  3S7W A;  1IVH A;  2CX9 A;  4E00 A;  4KSA A;  1GU6 A;  4G97 A;  4N5F A;  1Y8O A;  2YYJ A;  4DZY A;  2Q8F A;  1SIQ A;  4Q4U A;  3D9G A;  1FS8 A;  1FS7 A;  3BNH A;  4Q5B A;  2OEV A;  1RX0 A;  2BU2 A;  1BUC A;  2IX6 A;  4ZXV A;  4MPE A;  2RF7 A;  5K3H A;  4FF1 A;  1LVC A;  2Q8H A;  4HKR A;  1XFW A;  2E80 A;  1U8V A;  2BU7 A;  2CJ6 A;  4LQS B;  4WJY A;  3D1I A;  3P4T A;  3D2R A;  2YYL A;  1K8T A;  3CRL A;  4KS9 A;  4FF4 A;  4MPC A;  2ZDX A;  3TZ2 A;  1T9G A;  1GKX A;  1UDY A;  2R05 A;  3UU9 A;  1WS9 A;  4X28 C;  2YYK A;  2Q8I A;  3VKH A;  1EGD A;  2C0U A;  2ZO5 A;  4JIZ A;  1RP3 A;  3C2P A;  2JBS A;  2R03 A;  3EOM A;  1RJ4 A;  5B5V A;  1X8Z A;  3TZ0 A;  2FP1 A;  5M4M A;  4AKH A;  3MMO A;  1XFY A;  2WBI A;  4XVX A;  1XFX A;  4P79 A;  4AI6 A;  2AZE A;  5M4K A;  3MPI A;  2LFW A;  1UKW A;  1S26 A;  4HR3 A;  1W07 A;  2FON A;  1XG2 B;  1Y8P A;  3UBR A;  2JBR A;  4E01 A;  1PK0 A;  3Q24 A;  4AKI A;  2E81 A;  3CE2 A;  3KML A;  4X28 A;  3LG1 A;  5J6A A;  3TZ5 A;  2REH A;  3X29 A;  3Q0A A;  2Z1Q A;  4Q1O A;  1PI1 A;  4L3X A;  2BTZ A;  4RM7 A;  4L1F A;  2CJ4 A;  2EBH X;  4HKS A;  3OWA A;  3SWO A;  2F6L A;  5B5W A;  4L38 A;  5J71 A;  1X91 A;  2BU6 A;  3OIB A;  2CJ5 A;  1X90 A;  2E0A A;  2Q8G A;  3BNF A;  4H85 A;  4KCF A;  1OAH A;  4G5E A;  4J1V A;  2CJ7 A;  3C46 A;  2QR4 A;  3C3L A;  1K90 A;  4H7Q A;  2AO2 A;  1R3B A;  1EGE A;  2OR0 A;  2BU5 A;  2R0M A;  1SK6 A;  4MP7 A;  4QIC A;  2C12 A;  1JM6 A;  2J7A A;  2CJ8 A;  4NXL A;  3SCE A;  3II9 A;  2JIF A;  3GNC A;  4JIO A;  5BRM A;  2YYI A;  3TOR A;  2ZAF A;  1QDB A;  2VIG A;  3MDD A;  3SF6 A;  2YYG A;  3NF4 A;  3GQT A;  3D9F A;  2RFQ A;  3X0X A;  4W9U A;  1XFZ A;  3CRK A;  5BRK A;  1XFV A;  2EBF X;  2D29 A;  2EBA A;  3MXL A;  4DOY A;  5GJV E;  4F0X A;  5K3J A;  4Q5C A;  1JQI A;  1RJ1 A;  3VAD A;  3D6B A;  3SXQ A;  2HJN A;  3Q23 A;  4FZ4 A;  3TZ4 A;  5M4N A;  2VF1 A;  4KSF A;  2YYM A;  5EZ3 A;  2PNR A;  2PG0 A;  2PO4 A;  3LGQ A;  3MPJ A;  2A1T A;  2UXW A;  4ZYJ A;  5K3I A;  4O5M A;  4P13 A; 
#chains in the Genus database with same CATH homology
 4KTO A;  3BNG A;  4IV6 A;  3RKH A;  1R2J A;  3F29 A;  2R0N A;  5K3G A;  4OO2 A;  3FO3 A;  2DVL A;  3FCJ A;  3B96 A;  3AFF A;  4JEK A;  4M9A A;  3EON A;  1FS9 A;  2VR0 A;  3MDE A;  3AFE A;  2IX5 A;  3D9D A;  3M9V A;  2DDH A;  4IRN A;  3R7K A;  4L3Y A;  1IS2 A;  4U83 A;  1EGC A;  1SIR A;  2JBT A;  3TTB A;  3GM6 A;  3MKH A;  3L1T A;  3PFD A;  3HWC A;  4Q0T A;  3D9E A;  3OWM A;  3BNJ A;  2RDZ A;  3X0Y A;  4L3Z A;  4Q17 A;  2OT4 A;  3S7W A;  1IVH A;  2CX9 A;  1GU6 A;  4N5F A;  2YYJ A;  1SIQ A;  4Q4U A;  3D9G A;  1FS8 A;  1FS7 A;  3BNH A;  4Q5B A;  1RX0 A;  1BUC A;  2IX6 A;  4ZXV A;  2RF7 A;  5K3H A;  2E80 A;  1U8V A;  4WJY A;  3D1I A;  3P4T A;  2YYL A;  1T9G A;  1UDY A;  3UU9 A;  1WS9 A;  4X28 C;  2YYK A;  1EGD A;  2C0U A;  2ZO5 A;  2JBS A;  3EOM A;  3MMO A;  2WBI A;  4XVX A;  3MPI A;  1UKW A;  4HR3 A;  1W07 A;  2FON A;  3UBR A;  2JBR A;  2E81 A;  3LG1 A;  4X28 A;  2REH A;  2Z1Q A;  4Q1O A;  4L3X A;  4RM7 A;  4L1F A;  3OWA A;  3SWO A;  4L38 A;  3OIB A;  3BNF A;  4KCF A;  1OAH A;  4G5E A;  1EGE A;  2OR0 A;  2R0M A;  2C12 A;  3SCE A;  2J7A A;  4NXL A;  3II9 A;  2JIF A;  3GNC A;  3TOR A;  2YYI A;  2ZAF A;  1QDB A;  2VIG A;  3MDD A;  3SF6 A;  2YYG A;  3NF4 A;  3GQT A;  3D9F A;  2RFQ A;  3X0X A;  4W9U A;  2D29 A;  2EBA A;  3MXL A;  4DOY A;  5K3J A;  4Q5C A;  1JQI A;  3D6B A;  3SXQ A;  2YYM A;  3LGQ A;  2PG0 A;  3MPJ A;  2A1T A;  2UXW A;  4ZYJ A;  5K3I A;  4O5M A;  4P13 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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