3II9A

Crystal structure of glutaryl-coa dehydrogenase from burkholderia pseudomallei at 1.73 angstrom
Total Genus 156
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
156
sequence length
393
structure length
387
Chain Sequence
AATFHWDDPLLLDQQLADDERMVRDAAHAYAQGKLAPRVTEAFRHETTDAAIFREMGEIGLLGPTIPEQYGGPGLDYVSYGLIAREVERVDSGYRSMMSVQSSLVMVPIFEFGSDAQKEKYLPKLATGEWIGCFGLTEPNSMVTRARKVPGGYSLSGSKMWITNSPIADVFVVWAKLDEDGRDEIRGFILEKGCKGLSAPAIHGKVGLRASITGEIVLDEAFVPEENILPHVKGLRGPFTCLNSARYGIAWGALGAAESCWHIARQYVLDRKQFGRPLAANQLIQKKLADMQTEITLGLQGVLRLGRMKDEGTAAVEITSIMKRNSCGKALDIARLARDMLGGNGISDEFGVARHLVNLEVVNTYEGTHDIHALILGRAQTGIQAFF
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Glutaryl-CoA dehydrogenase
publication title User-loaded SlipChip for equipment-free multiplexed nanoliter-scale experiments.
pubmed doi rcsb
source organism Burkholderia pseudomallei 1710b
molecule tags Oxidoreductase
total genus 156
structure length 387
sequence length 393
chains with identical sequence B, C, D
ec nomenclature ec 1.3.99.7: Transferred entry: 1.3.8.6.
pdb deposition date 2009-07-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00441 Acyl-CoA_dh_1 Acyl-CoA dehydrogenase, C-terminal domain
A PF02770 Acyl-CoA_dh_M Acyl-CoA dehydrogenase, middle domain
A PF02771 Acyl-CoA_dh_N Acyl-CoA dehydrogenase, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.540.10 Mainly Alpha Orthogonal Bundle Butyryl-Coa Dehydrogenase, subunit A; domain 1 Acyl-CoA dehydrogenase/oxidase, N-terminal domain 3ii9A01
1.20.140.10 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A; domain 3 Butyryl-CoA Dehydrogenase, subunit A, domain 3 3ii9A03
2.40.110.10 Mainly Beta Beta Barrel Butyryl-CoA Dehydrogenase, subunit A; domain 2 Butyryl-CoA Dehydrogenase, subunit A, domain 2 3ii9A02
3MPJA 2C12A 1OAHA 2ZO5A 3F29A 3MPIA 4Q0TA 4X28A 4NXLA 3R7KA 3MMOA 3BNGA 2JIFA 3PFDA 5K3IA 3EOMA 2YYKA 2R0MA 3D9FA 4Q5BA 3HWCA 1EGCA 2IX6A 4RM7A 3MKHA 4DOYA 2YYJA 4L3ZA 1IS2A 3EONA 2VR0A 2RDZA 4X28C 1RX0A 4ZYJA 2RF7A 1W07A 4P13A 3D9EA 2JBTA 1T9GA 3L1TA 3NF4A 4ZXVA 3OIBA 4IRNA 3SWOA 3GM6A 4Q4UA 3GNCA 2REHA 2DDHA 2D29A 2YYLA 4WJYA 1FS7A 3MDEA 3BNJA 4G5EA 1EGEA 2A1TA 2RFQA 4N5FA 3TORA 1U8VA 4U83A 3BNFA 3LGQA 4IV6A 3FCJA 2ZAFA 3GQTA 3AFFA 3II9A 2YYIA 3B96A 4L1FA 2E80A 3MDDA 2R0NA 1JQIA 1SIRA 4L38A 3MXLA 4XVXA 1WS9A 3UBRA 2CX9A 3S7WA 2EBAA 3D1IA 3D9GA 5K3GA 4L3YA 2FONA 1IVHA 2OR0A 3SCEA 3P4TA 3X0YA 2DVLA 1R2JA 4KCFA 2E81A 4Q1OA 1EGDA 3M9VA 5K3HA 2J7AA 3SF6A 4Q17A 1FS9A 3D9DA 3RKHA 3OWAA 2UXWA 3AFEA 2VIGA 2JBSA 4O5MA 4OO2A 3LG1A 2IX5A 3D6BA 4W9UA 1UKWA 1SIQA 2YYMA 1UDYA 4Q5CA 3FO3A 3X0XA 4L3XA 2OT4A 3TTBA 3BNHA 2C0UA 2PG0A 2WBIA 2Z1QA 4M9AA 1QDBA 1FS8A 3OWMA 4KTOA 5K3JA 4HR3A 2JBRA 1BUCA 1GU6A 3UU9A 2YYGA 4JEKA 3SXQA
chains in the Genus database with same CATH superfamily
4MPCA 2GBBA 3MPJA 2C12A 2BTZA 1OAHA 2CJ4A 2ZO5A 3F29A 1X91A 3MPIA 4Q0TA 4X28A 4QICA 5J6AA 4NXLA 3R7KA 3MMOA 4H85A 3BNGA 4LQSB 5M4NA 2ZDXA 3TZ2A 2JIFA 3PFDA 4FF1A 5K3IA 2CJ5A 3EOMA 2CJ8A 2YYKA 3D2RA 2R0MA 2AO2A 3D9FA 4Q5BA 3HWCA 4DZYA 2BU6A 1EGCA 4J1VA 2IX6A 3TZ5A 4RM7A 3MKHA 2PNRA 4DOYA 1K8TA 2EBHX 2YYJA 2Q8HA 2BU5A 4L3ZA 1IS2A 1GKXA 3EONA 2VR0A 4MP2A 2RDZA 3C3LA 4X28C 2BU2A 1RX0A 4ZYJA 2RF7A 1W07A 4P13A 4HKSA 5M4PA 1R3BA 3D9EA 2JBTA 1T9GA 1GJVA 1SC5A 1Y8NA 3L1TA 2VF1A 3NF4A 4ZXVA 1SK6A 3OIBA 4IRNA 3SWOA 2OEVA 2ZKJA 3GNCA 2REHA 2DDHA 2R05A 3GM6A 2D29A 4Q4UA 4KSFA 2YYLA 4JIOA 4WJYA 1FS7A 3MDEA 2QR4A 3BNJA 3CRLA 3N0RA 5M4MA 1Y8PA 1K93A 4G5EA 1EGEA 4LQQB 2A1TA 2RFQA 4N5FA 2F6LA 3TORA 3CE2A 1U8VA 3Q22A 4U83A 4FF4A 1XFVA 3BNFA 5GJWE 3LGQA 5B6BA 4IV6A 3FCJA 5GJVE 4AI6A 2ZAFA 3GQTA 1GKZA 3Q24A 3AFFA 3II9A 2BU8A 2OEXA 1XFUA 2YYIA 3B96A 4L1FA 3CRKA 2E80A 3C46A 1XFXA 4P79A 4E00A 4F0XA 3MDDA 1XG2B 1XFYA 5J71A 2FP2A 2XQRB 2R0NA 4HKRA 1JQIA 2R03A 5BRMA 1LVCA 3Q23A 1SIRA 4L38A 3MXLA 4XVXA 1WS9A 2E0AA 2LFWA 2XS8A 4FF3A 3UBRA 2CX9A 4FZ4A 4KS9A 3S7WA 2EBAA 4MPNA 3D1IA 3DJLA 3D9GA 5K3GA 3KMLA 4L3YA 4MP7A 2FONA 1IVHA 2OR0A 1X8ZA 3SCEA 4AKGA 3U33A 3VADA 3P4TA 3X0YA 1JM6A 4H7QA 2DVLA 3TZ0A 2FP1A 3C2PA 1R2JA 2EBFX 4KCFA 2E81A 2XS1A 4KSAA 4Q1OA 1PK0A 1EGDA 2Q8GA 2Q8IA 3M9VA 4V25A 4AKHA 3VKHA 5K3HA 2AZEA 2J7AA 3SF6A 4MPEA 1FS9A 3D9DA 1RJ4A 3OWAA 2UXWA 3AFEA 4Q17A 3RKHA 3Q0AA 2VIGA 2JBSA 4O5MA 4OO2A 3LG1A 5B5VA 2OJQA 1Y0VA 1RP3A 2IX5A 2CJ7A 4FF2A 3D6BA 4W9UA 2PO4A 1UKWA 1SIQA 1XFWA 2YYMA 4V26A 1UDYA 3TZ4A 4Q5CA 3FO3A 3X0XA 4L3XA 2EC5A 2OT4A 3TTBA 5M4KA 3BNHA 2C0UA 2Q8FA 2PG0A 4JIZA 4H81A 2WBIA 5BRKA 2Z1QA 3X29A 4M9AA 1QDBA 1FS8A 3OWMA 3VKGA 4KTOA 5K3JA 1K90A 2CJ6A 1XFZA 4HR3A 1Y8OA 1RJ1A 4G97A 2JBRA 1BUCA 2YGWA 1GU6A 2R02A 1X90A 3UU9A 1S26A 4AKIA 2HJNA 2YYGA 4E01A 5EZ3A 1PI1A 5B5WA 4JEKA 2ZDYA 2BU7A 4E02A 3SXQA
chains in the Genus database with same CATH topology
3MPJA 2C12A 1OAHA 2ZO5A 3F29A 3MPIA 4Q0TA 4X28A 4NXLA 3R7KA 3MMOA 3BNGA 2JIFA 3PFDA 5K3IA 3EOMA 2YYKA 2R0MA 3D9FA 4Q5BA 3HWCA 1EGCA 2IX6A 4RM7A 3MKHA 4DOYA 2YYJA 4L3ZA 1IS2A 3EONA 2VR0A 2RDZA 4X28C 1RX0A 4ZYJA 2RF7A 1W07A 4P13A 3D9EA 2JBTA 1T9GA 3L1TA 3NF4A 4ZXVA 3OIBA 4IRNA 3SWOA 3GM6A 4Q4UA 3GNCA 2REHA 2DDHA 2D29A 2YYLA 4WJYA 1FS7A 3MDEA 3BNJA 4G5EA 1EGEA 2A1TA 2RFQA 4N5FA 3TORA 1U8VA 4U83A 3BNFA 3LGQA 4IV6A 3FCJA 2ZAFA 3GQTA 3AFFA 3II9A 2YYIA 3B96A 4L1FA 2E80A 3MDDA 2R0NA 1JQIA 1SIRA 4L38A 3MXLA 4XVXA 1WS9A 3UBRA 2CX9A 3S7WA 2EBAA 3D1IA 3D9GA 5K3GA 4L3YA 2FONA 1IVHA 2OR0A 3SCEA 3P4TA 3X0YA 2DVLA 1R2JA 4KCFA 2E81A 4Q1OA 1EGDA 3M9VA 5K3HA 2J7AA 3SF6A 4Q17A 1FS9A 3D9DA 3RKHA 3OWAA 2UXWA 3AFEA 2VIGA 2JBSA 4O5MA 4OO2A 3LG1A 2IX5A 3D6BA 4W9UA 1UKWA 1SIQA 2YYMA 1UDYA 4Q5CA 3FO3A 3X0XA 4L3XA 2OT4A 3TTBA 3BNHA 2C0UA 2PG0A 2WBIA 2Z1QA 4M9AA 1QDBA 1FS8A 3OWMA 4KTOA 5K3JA 4HR3A 2JBRA 1BUCA 1GU6A 3UU9A 2YYGA 4JEKA 3SXQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3MPJ A;  2C12 A;  1OAH A;  2ZO5 A;  3F29 A;  3MPI A;  4Q0T A;  4X28 A;  4NXL A;  3R7K A;  3MMO A;  3BNG A;  2JIF A;  3PFD A;  5K3I A;  3EOM A;  2YYK A;  2R0M A;  3D9F A;  4Q5B A;  3HWC A;  1EGC A;  2IX6 A;  4RM7 A;  3MKH A;  4DOY A;  2YYJ A;  4L3Z A;  1IS2 A;  3EON A;  2VR0 A;  2RDZ A;  4X28 C;  1RX0 A;  4ZYJ A;  2RF7 A;  1W07 A;  4P13 A;  3D9E A;  2JBT A;  1T9G A;  3L1T A;  3NF4 A;  4ZXV A;  3OIB A;  4IRN A;  3SWO A;  3GM6 A;  4Q4U A;  3GNC A;  2REH A;  2DDH A;  2D29 A;  2YYL A;  4WJY A;  1FS7 A;  3MDE A;  3BNJ A;  4G5E A;  1EGE A;  2A1T A;  2RFQ A;  4N5F A;  3TOR A;  1U8V A;  4U83 A;  3BNF A;  3LGQ A;  4IV6 A;  3FCJ A;  2ZAF A;  3GQT A;  3AFF A;  3II9 A;  2YYI A;  3B96 A;  4L1F A;  2E80 A;  3MDD A;  2R0N A;  1JQI A;  1SIR A;  4L38 A;  3MXL A;  4XVX A;  1WS9 A;  3UBR A;  2CX9 A;  3S7W A;  2EBA A;  3D1I A;  3D9G A;  5K3G A;  4L3Y A;  2FON A;  1IVH A;  2OR0 A;  3SCE A;  3P4T A;  3X0Y A;  2DVL A;  1R2J A;  4KCF A;  2E81 A;  4Q1O A;  1EGD A;  3M9V A;  5K3H A;  2J7A A;  3SF6 A;  4Q17 A;  1FS9 A;  3D9D A;  3RKH A;  3OWA A;  2UXW A;  3AFE A;  2VIG A;  2JBS A;  4O5M A;  4OO2 A;  3LG1 A;  2IX5 A;  3D6B A;  4W9U A;  1UKW A;  1SIQ A;  2YYM A;  1UDY A;  4Q5C A;  3FO3 A;  3X0X A;  4L3X A;  2OT4 A;  3TTB A;  3BNH A;  2C0U A;  2PG0 A;  2WBI A;  2Z1Q A;  4M9A A;  1QDB A;  1FS8 A;  3OWM A;  4KTO A;  5K3J A;  4HR3 A;  2JBR A;  1BUC A;  1GU6 A;  3UU9 A;  2YYG A;  4JEK A;  3SXQ A; 
#chains in the Genus database with same CATH topology
 4MPC A;  2GBB A;  3MPJ A;  2C12 A;  2BTZ A;  1OAH A;  2CJ4 A;  2ZO5 A;  3F29 A;  1X91 A;  3MPI A;  4Q0T A;  4X28 A;  4QIC A;  5J6A A;  4NXL A;  3R7K A;  3MMO A;  4H85 A;  3BNG A;  4LQS B;  5M4N A;  2ZDX A;  3TZ2 A;  2JIF A;  3PFD A;  4FF1 A;  5K3I A;  2CJ5 A;  3EOM A;  2CJ8 A;  2YYK A;  3D2R A;  2R0M A;  2AO2 A;  3D9F A;  4Q5B A;  3HWC A;  4DZY A;  2BU6 A;  1EGC A;  4J1V A;  2IX6 A;  3TZ5 A;  4RM7 A;  3MKH A;  2PNR A;  4DOY A;  1K8T A;  2EBH X;  2YYJ A;  2Q8H A;  2BU5 A;  4L3Z A;  1IS2 A;  1GKX A;  3EON A;  2VR0 A;  4MP2 A;  2RDZ A;  3C3L A;  4X28 C;  2BU2 A;  1RX0 A;  4ZYJ A;  2RF7 A;  1W07 A;  4P13 A;  4HKS A;  5M4P A;  1R3B A;  3D9E A;  2JBT A;  1T9G A;  1GJV A;  1SC5 A;  1Y8N A;  3L1T A;  2VF1 A;  3NF4 A;  4ZXV A;  1SK6 A;  3OIB A;  4IRN A;  3SWO A;  2OEV A;  2ZKJ A;  3GNC A;  2REH A;  2DDH A;  2R05 A;  3GM6 A;  2D29 A;  4Q4U A;  4KSF A;  2YYL A;  4JIO A;  4WJY A;  1FS7 A;  3MDE A;  2QR4 A;  3BNJ A;  3CRL A;  3N0R A;  5M4M A;  1Y8P A;  1K93 A;  4G5E A;  1EGE A;  4LQQ B;  2A1T A;  2RFQ A;  4N5F A;  2F6L A;  3TOR A;  3CE2 A;  1U8V A;  3Q22 A;  4U83 A;  4FF4 A;  1XFV A;  3BNF A;  5GJW E;  3LGQ A;  5B6B A;  4IV6 A;  3FCJ A;  5GJV E;  4AI6 A;  2ZAF A;  3GQT A;  1GKZ A;  3Q24 A;  3AFF A;  3II9 A;  2BU8 A;  2OEX A;  1XFU A;  2YYI A;  3B96 A;  4L1F A;  3CRK A;  2E80 A;  3C46 A;  1XFX A;  4P79 A;  4E00 A;  4F0X A;  3MDD A;  1XG2 B;  1XFY A;  5J71 A;  2FP2 A;  2XQR B;  2R0N A;  4HKR A;  1JQI A;  2R03 A;  5BRM A;  1LVC A;  3Q23 A;  1SIR A;  4L38 A;  3MXL A;  4XVX A;  1WS9 A;  2E0A A;  2LFW A;  2XS8 A;  4FF3 A;  3UBR A;  2CX9 A;  4FZ4 A;  4KS9 A;  3S7W A;  2EBA A;  4MPN A;  3D1I A;  3DJL A;  3D9G A;  5K3G A;  3KML A;  4L3Y A;  4MP7 A;  2FON A;  1IVH A;  2OR0 A;  1X8Z A;  3SCE A;  4AKG A;  3U33 A;  3VAD A;  3P4T A;  3X0Y A;  1JM6 A;  4H7Q A;  2DVL A;  3TZ0 A;  2FP1 A;  3C2P A;  1R2J A;  2EBF X;  4KCF A;  2E81 A;  2XS1 A;  4KSA A;  4Q1O A;  1PK0 A;  1EGD A;  2Q8G A;  2Q8I A;  3M9V A;  4V25 A;  4AKH A;  3VKH A;  5K3H A;  2AZE A;  2J7A A;  3SF6 A;  4MPE A;  1FS9 A;  3D9D A;  1RJ4 A;  3OWA A;  2UXW A;  3AFE A;  4Q17 A;  3RKH A;  3Q0A A;  2VIG A;  2JBS A;  4O5M A;  4OO2 A;  3LG1 A;  5B5V A;  2OJQ A;  1Y0V A;  1RP3 A;  2IX5 A;  2CJ7 A;  4FF2 A;  3D6B A;  4W9U A;  2PO4 A;  1UKW A;  1SIQ A;  1XFW A;  2YYM A;  4V26 A;  1UDY A;  3TZ4 A;  4Q5C A;  3FO3 A;  3X0X A;  4L3X A;  2EC5 A;  2OT4 A;  3TTB A;  5M4K A;  3BNH A;  2C0U A;  2Q8F A;  2PG0 A;  4JIZ A;  4H81 A;  2WBI A;  5BRK A;  2Z1Q A;  3X29 A;  4M9A A;  1QDB A;  1FS8 A;  3OWM A;  3VKG A;  4KTO A;  5K3J A;  1K90 A;  2CJ6 A;  1XFZ A;  4HR3 A;  1Y8O A;  1RJ1 A;  4G97 A;  2JBR A;  1BUC A;  2YGW A;  1GU6 A;  2R02 A;  1X90 A;  3UU9 A;  1S26 A;  4AKI A;  2HJN A;  2YYG A;  4E01 A;  5EZ3 A;  1PI1 A;  5B5W A;  4JEK A;  2ZDY A;  2BU7 A;  4E02 A;  3SXQ A; 
#chains in the Genus database with same CATH homology
 3MPJ A;  2C12 A;  1OAH A;  2ZO5 A;  3F29 A;  3MPI A;  4Q0T A;  4X28 A;  4NXL A;  3R7K A;  3MMO A;  3BNG A;  2JIF A;  3PFD A;  5K3I A;  3EOM A;  2YYK A;  2R0M A;  3D9F A;  4Q5B A;  3HWC A;  1EGC A;  2IX6 A;  4RM7 A;  3MKH A;  4DOY A;  2YYJ A;  4L3Z A;  1IS2 A;  3EON A;  2VR0 A;  2RDZ A;  4X28 C;  1RX0 A;  4ZYJ A;  2RF7 A;  1W07 A;  4P13 A;  3D9E A;  2JBT A;  1T9G A;  3L1T A;  3NF4 A;  4ZXV A;  3OIB A;  4IRN A;  3SWO A;  3GM6 A;  4Q4U A;  3GNC A;  2REH A;  2DDH A;  2D29 A;  2YYL A;  4WJY A;  1FS7 A;  3MDE A;  3BNJ A;  4G5E A;  1EGE A;  2A1T A;  2RFQ A;  4N5F A;  3TOR A;  1U8V A;  4U83 A;  3BNF A;  3LGQ A;  4IV6 A;  3FCJ A;  2ZAF A;  3GQT A;  3AFF A;  3II9 A;  2YYI A;  3B96 A;  4L1F A;  2E80 A;  3MDD A;  2R0N A;  1JQI A;  1SIR A;  4L38 A;  3MXL A;  4XVX A;  1WS9 A;  3UBR A;  2CX9 A;  3S7W A;  2EBA A;  3D1I A;  3D9G A;  5K3G A;  4L3Y A;  2FON A;  1IVH A;  2OR0 A;  3SCE A;  3P4T A;  3X0Y A;  2DVL A;  1R2J A;  4KCF A;  2E81 A;  4Q1O A;  1EGD A;  3M9V A;  5K3H A;  2J7A A;  3SF6 A;  4Q17 A;  1FS9 A;  3D9D A;  3RKH A;  3OWA A;  2UXW A;  3AFE A;  2VIG A;  2JBS A;  4O5M A;  4OO2 A;  3LG1 A;  2IX5 A;  3D6B A;  4W9U A;  1UKW A;  1SIQ A;  2YYM A;  1UDY A;  4Q5C A;  3FO3 A;  3X0X A;  4L3X A;  2OT4 A;  3TTB A;  3BNH A;  2C0U A;  2PG0 A;  2WBI A;  2Z1Q A;  4M9A A;  1QDB A;  1FS8 A;  3OWM A;  4KTO A;  5K3J A;  4HR3 A;  2JBR A;  1BUC A;  1GU6 A;  3UU9 A;  2YYG A;  4JEK A;  3SXQ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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