3II9A

Crystal structure of glutaryl-coa dehydrogenase from burkholderia pseudomallei at 1.73 angstrom
Total Genus 156
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
156
sequence length
393
structure length
387
Chain Sequence
AATFHWDDPLLLDQQLADDERMVRDAAHAYAQGKLAPRVTEAFRHETTDAAIFREMGEIGLLGPTIPEQYGGPGLDYVSYGLIAREVERVDSGYRSMMSVQSSLVMVPIFEFGSDAQKEKYLPKLATGEWIGCFGLTEPNSMVTRARKVPGGYSLSGSKMWITNSPIADVFVVWAKLDEDGRDEIRGFILEKGCKGLSAPAIHGKVGLRASITGEIVLDEAFVPEENILPHVKGLRGPFTCLNSARYGIAWGALGAAESCWHIARQYVLDRKQFGRPLAANQLIQKKLADMQTEITLGLQGVLRLGRMKDEGTAAVEITSIMKRNSCGKALDIARLARDMLGGNGISDEFGVARHLVNLEVVNTYEGTHDIHALILGRAQTGIQAFF
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Glutaryl-CoA dehydrogenase
publication title User-loaded SlipChip for equipment-free multiplexed nanoliter-scale experiments.
pubmed doi rcsb
source organism Burkholderia pseudomallei 1710b
molecule tags Oxidoreductase
total genus 156
structure length 387
sequence length 393
chains with identical sequence B, C, D
ec nomenclature ec 1.3.99.7: Transferred entry: 1.3.8.6.
pdb deposition date 2009-07-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00441 Acyl-CoA_dh_1 Acyl-CoA dehydrogenase, C-terminal domain
A PF02770 Acyl-CoA_dh_M Acyl-CoA dehydrogenase, middle domain
A PF02771 Acyl-CoA_dh_N Acyl-CoA dehydrogenase, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.540.10 Mainly Alpha Orthogonal Bundle Butyryl-Coa Dehydrogenase, subunit A; domain 1 Acyl-CoA dehydrogenase/oxidase, N-terminal domain 3ii9A01
1.20.140.10 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A; domain 3 Butyryl-CoA Dehydrogenase, subunit A, domain 3 3ii9A03
2.40.110.10 Mainly Beta Beta Barrel Butyryl-CoA Dehydrogenase, subunit A; domain 2 Butyryl-CoA Dehydrogenase, subunit A, domain 2 3ii9A02
5K3JA 2VR0A 3RKHA 3BNFA 3D9FA 1BUCA 2OT4A 3BNHA 2JBSA 2FONA 4O5MA 3GQTA 2EBAA 1IS2A 2ZAFA 3OWAA 4G5EA 3D9DA 3AFFA 4M9AA 2E81A 2PG0A 1UDYA 4Q1OA 4X28C 3UBRA 1UKWA 2R0NA 3X0YA 2D29A 2IX5A 4L38A 3MDDA 3AFEA 2Z1QA 3X0XA 3D9EA 1SIQA 1FS7A 2J7AA 2REHA 2C12A 1JQIA 1WS9A 4L3YA 4W9UA 4OO2A 5K3IA 3OWMA 4KTOA 2UXWA 1U8VA 1FS9A 4KCFA 2JBRA 4DOYA 3NF4A 2IX6A 3MMOA 2YYKA 3MPJA 3MXLA 2R0MA 4Q4UA 3MDEA 3M9VA 1FS8A 3TORA 4XVXA 3D9GA 3F29A 2DVLA 4Q5BA 3L1TA 2YYLA 3EONA 4P13A 2YYGA 4ZYJA 4X28A 1QDBA 3FO3A 3BNGA 3LG1A 3R7KA 3PFDA 5K3GA 4U83A 2OR0A 3EOMA 3MKHA 3HWCA 5K3HA 1EGEA 3SF6A 2YYJA 4L1FA 3II9A 2DDHA 3LGQA 3FCJA 2CX9A 3GM6A 2JIFA 2RFQA 2WBIA 1OAHA 4ZXVA 2ZO5A 3B96A 4L3XA 4NXLA 4Q0TA 4IV6A 2YYIA 4IRNA 4WJYA 4RM7A 3UU9A 2C0UA 3BNJA 3P4TA 1T9GA 3SCEA 1W07A 1R2JA 2A1TA 1SIRA 4HR3A 3SWOA 3D6BA 3S7WA 3SXQA 1GU6A 1RX0A 4N5FA 2VIGA 4Q17A 3GNCA 3OIBA 2YYMA 1IVHA 3MPIA 1EGCA 3TTBA 2JBTA 4JEKA 2RF7A 2E80A 2RDZA 4Q5CA 1EGDA 3D1IA 4L3ZA
chains in the Genus database with same CATH superfamily
5K3JA 1GKXA 2HJNA 5B6BA 1RP3A 2VR0A 3RKHA 4H85A 5GJVE 1XFYA 3BNFA 3D9FA 1BUCA 2CJ8A 2E0AA 4V26A 2F6LA 2OT4A 2FP2A 3BNHA 2JBSA 2Q8HA 3TZ4A 2FONA 4O5MA 2AZEA 3CRKA 3GQTA 2EBAA 2ZDXA 1IS2A 2ZAFA 1X90A 3OWAA 2LFWA 3D9DA 3AFFA 4M9AA 4G5EA 2E81A 2EC5A 2Q8GA 4E02A 2PG0A 1UDYA 4MP7A 4X28C 2BU8A 4Q1OA 3UBRA 1UKWA 2R0NA 3X0YA 2VF1A 5GJWE 4FF2A 2D29A 2IX5A 2GBBA 3D2RA 4L38A 3MDDA 4MP2A 3X29A 5M4MA 3DJLA 3AFEA 2CJ7A 2XQRB 2Z1QA 3X0XA 3D9EA 5B5VA 1SIQA 1JM6A 1FS7A 1Y8OA 2Q8FA 5J71A 3TZ5A 4FZ4A 1XFZA 1RJ1A 4G97A 4MPCA 2R05A 2J7AA 2REHA 3C46A 2C12A 1XFUA 1JQIA 1WS9A 1SC5A 4H7QA 4H81A 4W9UA 4L3YA 4LQSB 4OO2A 5K3IA 3OWMA 4KTOA 2UXWA 1U8VA 4FF4A 2CJ5A 2AO2A 1R3BA 1FS9A 4KCFA 4KS9A 2JBRA 4DOYA 3VKGA 3NF4A 5BRKA 2IX6A 2YGWA 3MMOA 2YYKA 2R02A 3U33A 4JIOA 2OEVA 4E00A 1Y0VA 3MPJA 4LQQB 3Q23A 3VKHA 3MXLA 2CJ6A 2R0MA 4Q4UA 4AI6A 4AKHA 3N0RA 5M4PA 3MDEA 2OJQA 4DZYA 3M9VA 1FS8A 2OEXA 2PO4A 4XVXA 3D9GA 3TORA 2BU2A 3F29A 3TZ2A 4KSFA 4MPEA 2DVLA 2XS1A 4Q5BA 3L1TA 2YYLA 3EONA 4P13A 3KMLA 2YYGA 4HKRA 4ZYJA 1Y8NA 4X28A 1QDBA 3FO3A 1XFWA 2EBFX 3BNGA 1SK6A 3R7KA 1XFXA 3LG1A 4JIZA 4KSAA 1PI1A 3PFDA 5K3GA 4FF1A 4U83A 2ZDYA 2OR0A 3EOMA 3MKHA 1S26A 3HWCA 5BRMA 5K3HA 1EGEA 3SF6A 2BTZA 2Q8IA 4J1VA 2YYJA 4MPNA 4L1FA 2BU5A 4V25A 3II9A 2DDHA 3LGQA 3FCJA 3C2PA 5J6AA 1X8ZA 2CX9A 1X91A 5EZ3A 3GM6A 2JIFA 2RFQA 3VADA 4F0XA 5M4NA 1GKZA 2WBIA 2CJ4A 3CRLA 1OAHA 1XFVA 1PK0A 3Q22A 4AKGA 4ZXVA 2ZO5A 2FP1A 3B96A 4L3XA 2EBHX 4NXLA 4Q0TA 4IV6A 1RJ4A 2QR4A 4IRNA 1GJVA 4RM7A 2XS8A 2YYIA 2R03A 2ZKJA 4HKSA 4WJYA 5M4KA 3TZ0A 2PNRA 1LVCA 1K90A 3UU9A 4FF3A 2C0UA 3BNJA 4E01A 3P4TA 4AKIA 5B5WA 1T9GA 3SCEA 1W07A 1R2JA 1K8TA 2A1TA 1SIRA 4HR3A 3SWOA 3D6BA 2BU6A 4P79A 1GU6A 1RX0A 4N5FA 3S7WA 3SXQA 3Q24A 3C3LA 2VIGA 4Q17A 3GNCA 3OIBA 3Q0AA 1K93A 2BU7A 2YYMA 1IVHA 3MPIA 1EGCA 3TTBA 1XG2B 2JBTA 4JEKA 2RF7A 2E80A 2RDZA 4Q5CA 4QICA 3CE2A 1EGDA 1Y8PA 3D1IA 4L3ZA
chains in the Genus database with same CATH topology
5K3JA 2VR0A 3RKHA 3BNFA 3D9FA 1BUCA 2OT4A 3BNHA 2JBSA 2FONA 4O5MA 3GQTA 2EBAA 1IS2A 2ZAFA 3OWAA 4G5EA 3D9DA 3AFFA 4M9AA 2E81A 2PG0A 1UDYA 4Q1OA 4X28C 3UBRA 1UKWA 2R0NA 3X0YA 2D29A 2IX5A 4L38A 3MDDA 3AFEA 2Z1QA 3X0XA 3D9EA 1SIQA 1FS7A 2J7AA 2REHA 2C12A 1JQIA 1WS9A 4L3YA 4W9UA 4OO2A 5K3IA 3OWMA 4KTOA 2UXWA 1U8VA 1FS9A 4KCFA 2JBRA 4DOYA 3NF4A 2IX6A 3MMOA 2YYKA 3MPJA 3MXLA 2R0MA 4Q4UA 3MDEA 3M9VA 1FS8A 3TORA 4XVXA 3D9GA 3F29A 2DVLA 4Q5BA 3L1TA 2YYLA 3EONA 4P13A 2YYGA 4ZYJA 4X28A 1QDBA 3FO3A 3BNGA 3LG1A 3R7KA 3PFDA 5K3GA 4U83A 2OR0A 3EOMA 3MKHA 3HWCA 5K3HA 1EGEA 3SF6A 2YYJA 4L1FA 3II9A 2DDHA 3LGQA 3FCJA 2CX9A 3GM6A 2JIFA 2RFQA 2WBIA 1OAHA 4ZXVA 2ZO5A 3B96A 4L3XA 4NXLA 4Q0TA 4IV6A 2YYIA 4IRNA 4WJYA 4RM7A 3UU9A 2C0UA 3BNJA 3P4TA 1T9GA 3SCEA 1W07A 1R2JA 2A1TA 1SIRA 4HR3A 3SWOA 3D6BA 3S7WA 3SXQA 1GU6A 1RX0A 4N5FA 2VIGA 4Q17A 3GNCA 3OIBA 2YYMA 1IVHA 3MPIA 1EGCA 3TTBA 2JBTA 4JEKA 2RF7A 2E80A 2RDZA 4Q5CA 1EGDA 3D1IA 4L3ZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5K3J A;  2VR0 A;  3RKH A;  3BNF A;  3D9F A;  1BUC A;  2OT4 A;  3BNH A;  2JBS A;  2FON A;  4O5M A;  3GQT A;  2EBA A;  1IS2 A;  2ZAF A;  3OWA A;  4G5E A;  3D9D A;  3AFF A;  4M9A A;  2E81 A;  2PG0 A;  1UDY A;  4Q1O A;  4X28 C;  3UBR A;  1UKW A;  2R0N A;  3X0Y A;  2D29 A;  2IX5 A;  4L38 A;  3MDD A;  3AFE A;  2Z1Q A;  3X0X A;  3D9E A;  1SIQ A;  1FS7 A;  2J7A A;  2REH A;  2C12 A;  1JQI A;  1WS9 A;  4L3Y A;  4W9U A;  4OO2 A;  5K3I A;  3OWM A;  4KTO A;  2UXW A;  1U8V A;  1FS9 A;  4KCF A;  2JBR A;  4DOY A;  3NF4 A;  2IX6 A;  3MMO A;  2YYK A;  3MPJ A;  3MXL A;  2R0M A;  4Q4U A;  3MDE A;  3M9V A;  1FS8 A;  3TOR A;  4XVX A;  3D9G A;  3F29 A;  2DVL A;  4Q5B A;  3L1T A;  2YYL A;  3EON A;  4P13 A;  2YYG A;  4ZYJ A;  4X28 A;  1QDB A;  3FO3 A;  3BNG A;  3LG1 A;  3R7K A;  3PFD A;  5K3G A;  4U83 A;  2OR0 A;  3EOM A;  3MKH A;  3HWC A;  5K3H A;  1EGE A;  3SF6 A;  2YYJ A;  4L1F A;  3II9 A;  2DDH A;  3LGQ A;  3FCJ A;  2CX9 A;  3GM6 A;  2JIF A;  2RFQ A;  2WBI A;  1OAH A;  4ZXV A;  2ZO5 A;  3B96 A;  4L3X A;  4NXL A;  4Q0T A;  4IV6 A;  2YYI A;  4IRN A;  4WJY A;  4RM7 A;  3UU9 A;  2C0U A;  3BNJ A;  3P4T A;  1T9G A;  3SCE A;  1W07 A;  1R2J A;  2A1T A;  1SIR A;  4HR3 A;  3SWO A;  3D6B A;  3S7W A;  3SXQ A;  1GU6 A;  1RX0 A;  4N5F A;  2VIG A;  4Q17 A;  3GNC A;  3OIB A;  2YYM A;  1IVH A;  3MPI A;  1EGC A;  3TTB A;  2JBT A;  4JEK A;  2RF7 A;  2E80 A;  2RDZ A;  4Q5C A;  1EGD A;  3D1I A;  4L3Z A; 
#chains in the Genus database with same CATH topology
 5K3J A;  1GKX A;  2HJN A;  5B6B A;  1RP3 A;  2VR0 A;  3RKH A;  4H85 A;  5GJV E;  1XFY A;  3BNF A;  3D9F A;  1BUC A;  2CJ8 A;  2E0A A;  4V26 A;  2F6L A;  2OT4 A;  2FP2 A;  3BNH A;  2JBS A;  2Q8H A;  3TZ4 A;  2FON A;  4O5M A;  2AZE A;  3CRK A;  3GQT A;  2EBA A;  2ZDX A;  1IS2 A;  2ZAF A;  1X90 A;  3OWA A;  2LFW A;  3D9D A;  3AFF A;  4M9A A;  4G5E A;  2E81 A;  2EC5 A;  2Q8G A;  4E02 A;  2PG0 A;  1UDY A;  4MP7 A;  4X28 C;  2BU8 A;  4Q1O A;  3UBR A;  1UKW A;  2R0N A;  3X0Y A;  2VF1 A;  5GJW E;  4FF2 A;  2D29 A;  2IX5 A;  2GBB A;  3D2R A;  4L38 A;  3MDD A;  4MP2 A;  3X29 A;  5M4M A;  3DJL A;  3AFE A;  2CJ7 A;  2XQR B;  2Z1Q A;  3X0X A;  3D9E A;  5B5V A;  1SIQ A;  1JM6 A;  1FS7 A;  1Y8O A;  2Q8F A;  5J71 A;  3TZ5 A;  4FZ4 A;  1XFZ A;  1RJ1 A;  4G97 A;  4MPC A;  2R05 A;  2J7A A;  2REH A;  3C46 A;  2C12 A;  1XFU A;  1JQI A;  1WS9 A;  1SC5 A;  4H7Q A;  4H81 A;  4W9U A;  4L3Y A;  4LQS B;  4OO2 A;  5K3I A;  3OWM A;  4KTO A;  2UXW A;  1U8V A;  4FF4 A;  2CJ5 A;  2AO2 A;  1R3B A;  1FS9 A;  4KCF A;  4KS9 A;  2JBR A;  4DOY A;  3VKG A;  3NF4 A;  5BRK A;  2IX6 A;  2YGW A;  3MMO A;  2YYK A;  2R02 A;  3U33 A;  4JIO A;  2OEV A;  4E00 A;  1Y0V A;  3MPJ A;  4LQQ B;  3Q23 A;  3VKH A;  3MXL A;  2CJ6 A;  2R0M A;  4Q4U A;  4AI6 A;  4AKH A;  3N0R A;  5M4P A;  3MDE A;  2OJQ A;  4DZY A;  3M9V A;  1FS8 A;  2OEX A;  2PO4 A;  4XVX A;  3D9G A;  3TOR A;  2BU2 A;  3F29 A;  3TZ2 A;  4KSF A;  4MPE A;  2DVL A;  2XS1 A;  4Q5B A;  3L1T A;  2YYL A;  3EON A;  4P13 A;  3KML A;  2YYG A;  4HKR A;  4ZYJ A;  1Y8N A;  4X28 A;  1QDB A;  3FO3 A;  1XFW A;  2EBF X;  3BNG A;  1SK6 A;  3R7K A;  1XFX A;  3LG1 A;  4JIZ A;  4KSA A;  1PI1 A;  3PFD A;  5K3G A;  4FF1 A;  4U83 A;  2ZDY A;  2OR0 A;  3EOM A;  3MKH A;  1S26 A;  3HWC A;  5BRM A;  5K3H A;  1EGE A;  3SF6 A;  2BTZ A;  2Q8I A;  4J1V A;  2YYJ A;  4MPN A;  4L1F A;  2BU5 A;  4V25 A;  3II9 A;  2DDH A;  3LGQ A;  3FCJ A;  3C2P A;  5J6A A;  1X8Z A;  2CX9 A;  1X91 A;  5EZ3 A;  3GM6 A;  2JIF A;  2RFQ A;  3VAD A;  4F0X A;  5M4N A;  1GKZ A;  2WBI A;  2CJ4 A;  3CRL A;  1OAH A;  1XFV A;  1PK0 A;  3Q22 A;  4AKG A;  4ZXV A;  2ZO5 A;  2FP1 A;  3B96 A;  4L3X A;  2EBH X;  4NXL A;  4Q0T A;  4IV6 A;  1RJ4 A;  2QR4 A;  4IRN A;  1GJV A;  4RM7 A;  2XS8 A;  2YYI A;  2R03 A;  2ZKJ A;  4HKS A;  4WJY A;  5M4K A;  3TZ0 A;  2PNR A;  1LVC A;  1K90 A;  3UU9 A;  4FF3 A;  2C0U A;  3BNJ A;  4E01 A;  3P4T A;  4AKI A;  5B5W A;  1T9G A;  3SCE A;  1W07 A;  1R2J A;  1K8T A;  2A1T A;  1SIR A;  4HR3 A;  3SWO A;  3D6B A;  2BU6 A;  4P79 A;  1GU6 A;  1RX0 A;  4N5F A;  3S7W A;  3SXQ A;  3Q24 A;  3C3L A;  2VIG A;  4Q17 A;  3GNC A;  3OIB A;  3Q0A A;  1K93 A;  2BU7 A;  2YYM A;  1IVH A;  3MPI A;  1EGC A;  3TTB A;  1XG2 B;  2JBT A;  4JEK A;  2RF7 A;  2E80 A;  2RDZ A;  4Q5C A;  4QIC A;  3CE2 A;  1EGD A;  1Y8P A;  3D1I A;  4L3Z A; 
#chains in the Genus database with same CATH homology
 5K3J A;  2VR0 A;  3RKH A;  3BNF A;  3D9F A;  1BUC A;  2OT4 A;  3BNH A;  2JBS A;  2FON A;  4O5M A;  3GQT A;  2EBA A;  1IS2 A;  2ZAF A;  3OWA A;  4G5E A;  3D9D A;  3AFF A;  4M9A A;  2E81 A;  2PG0 A;  1UDY A;  4Q1O A;  4X28 C;  3UBR A;  1UKW A;  2R0N A;  3X0Y A;  2D29 A;  2IX5 A;  4L38 A;  3MDD A;  3AFE A;  2Z1Q A;  3X0X A;  3D9E A;  1SIQ A;  1FS7 A;  2J7A A;  2REH A;  2C12 A;  1JQI A;  1WS9 A;  4L3Y A;  4W9U A;  4OO2 A;  5K3I A;  3OWM A;  4KTO A;  2UXW A;  1U8V A;  1FS9 A;  4KCF A;  2JBR A;  4DOY A;  3NF4 A;  2IX6 A;  3MMO A;  2YYK A;  3MPJ A;  3MXL A;  2R0M A;  4Q4U A;  3MDE A;  3M9V A;  1FS8 A;  3TOR A;  4XVX A;  3D9G A;  3F29 A;  2DVL A;  4Q5B A;  3L1T A;  2YYL A;  3EON A;  4P13 A;  2YYG A;  4ZYJ A;  4X28 A;  1QDB A;  3FO3 A;  3BNG A;  3LG1 A;  3R7K A;  3PFD A;  5K3G A;  4U83 A;  2OR0 A;  3EOM A;  3MKH A;  3HWC A;  5K3H A;  1EGE A;  3SF6 A;  2YYJ A;  4L1F A;  3II9 A;  2DDH A;  3LGQ A;  3FCJ A;  2CX9 A;  3GM6 A;  2JIF A;  2RFQ A;  2WBI A;  1OAH A;  4ZXV A;  2ZO5 A;  3B96 A;  4L3X A;  4NXL A;  4Q0T A;  4IV6 A;  2YYI A;  4IRN A;  4WJY A;  4RM7 A;  3UU9 A;  2C0U A;  3BNJ A;  3P4T A;  1T9G A;  3SCE A;  1W07 A;  1R2J A;  2A1T A;  1SIR A;  4HR3 A;  3SWO A;  3D6B A;  3S7W A;  3SXQ A;  1GU6 A;  1RX0 A;  4N5F A;  2VIG A;  4Q17 A;  3GNC A;  3OIB A;  2YYM A;  1IVH A;  3MPI A;  1EGC A;  3TTB A;  2JBT A;  4JEK A;  2RF7 A;  2E80 A;  2RDZ A;  4Q5C A;  1EGD A;  3D1I A;  4L3Z A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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