3II9A

Crystal structure of glutaryl-coa dehydrogenase from burkholderia pseudomallei at 1.73 angstrom
Total Genus 156
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
156
sequence length
393
structure length
387
Chain Sequence
AATFHWDDPLLLDQQLADDERMVRDAAHAYAQGKLAPRVTEAFRHETTDAAIFREMGEIGLLGPTIPEQYGGPGLDYVSYGLIAREVERVDSGYRSMMSVQSSLVMVPIFEFGSDAQKEKYLPKLATGEWIGCFGLTEPNSMVTRARKVPGGYSLSGSKMWITNSPIADVFVVWAKLDEDGRDEIRGFILEKGCKGLSAPAIHGKVGLRASITGEIVLDEAFVPEENILPHVKGLRGPFTCLNSARYGIAWGALGAAESCWHIARQYVLDRKQFGRPLAANQLIQKKLADMQTEITLGLQGVLRLGRMKDEGTAAVEITSIMKRNSCGKALDIARLARDMLGGNGISDEFGVARHLVNLEVVNTYEGTHDIHALILGRAQTGIQAFF
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords Glutaryl-CoA dehydrogenase
publication title User-loaded SlipChip for equipment-free multiplexed nanoliter-scale experiments.
pubmed doi rcsb
source organism Burkholderia pseudomallei 1710b
total genus 156
structure length 387
sequence length 393
chains with identical sequence B, C, D
ec nomenclature ec 1.3.99.7: Transferred entry: 1.3.8.6.
pdb deposition date 2009-07-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00441 Acyl-CoA_dh_1 Acyl-CoA dehydrogenase, C-terminal domain
A PF02770 Acyl-CoA_dh_M Acyl-CoA dehydrogenase, middle domain
A PF02771 Acyl-CoA_dh_N Acyl-CoA dehydrogenase, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.540.10 Mainly Alpha Orthogonal Bundle Butyryl-Coa Dehydrogenase, subunit A; domain 1 Acyl-CoA dehydrogenase/oxidase, N-terminal domain 3ii9A01
1.20.140.10 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A; domain 3 Butyryl-CoA Dehydrogenase, subunit A, domain 3 3ii9A03
2.40.110.10 Mainly Beta Beta Barrel Butyryl-CoA Dehydrogenase, subunit A; domain 2 Butyryl-CoA Dehydrogenase, subunit A, domain 2 3ii9A02
1R2JA 1QDBA 2UXWA 3R7KA 3TTBA 1UDYA 3D9DA 4Q0TA 5K3IA 3D9GA 2A1TA 2YYKA 4N5FA 4XVXA 3OIBA 5K3JA 1UKWA 4ZXVA 2DDHA 1FS8A 2JBSA 3SWOA 3MPIA 3EONA 3SXQA 1SIRA 2YYGA 5K3GA 4L3XA 4L3ZA 4Q5CA 3RKHA 2IX6A 4M9AA 2REHA 4Q1OA 3AFEA 1EGEA 2D29A 3UBRA 3GM6A 3TORA 4KCFA 2J7AA 1T9GA 1FS7A 4L38A 2VR0A 2FONA 2ZO5A 2VIGA 3GNCA 4U83A 3OWAA 2OR0A 4X28A 3SF6A 4Q5BA 3HWCA 3D1IA 3X0XA 4RM7A 4L3YA 2PG0A 2R0NA 4Q4UA 3MPJA 3D6BA 1IVHA 3L1TA 3SCEA 3UU9A 3FCJA 2WBIA 4X28C 2C12A 1EGDA 1SIQA 2JBTA 4O5MA 2YYIA 3II9A 1RX0A 3MXLA 4NXLA 1U8VA 2YYMA 3D9FA 2R0MA 2EBAA 4Q17A 3D9EA 3OWMA 2OT4A 3MDEA 1IS2A 3P4TA 2RFQA 4L1FA 2E81A 4P13A 2IX5A 3MMOA 1FS9A 3BNFA 4W9UA 3LG1A 4IRNA 4HR3A 2YYJA 1W07A 3X0YA 2JIFA 1OAHA 2E80A 2Z1QA 1GU6A 1EGCA 2CX9A 3LGQA 3EOMA 3F29A 3S7WA 4G5EA 4ZYJA 3GQTA 2DVLA 3BNJA 3NF4A 3PFDA 3BNGA 2RDZA 3MKHA 3B96A 4DOYA 1JQIA 2RF7A 2YYLA 4IV6A 3BNHA 3AFFA 1WS9A 1BUCA 2ZAFA 4WJYA 4KTOA 3FO3A 2JBRA 2C0UA 3MDDA 5K3HA 4OO2A 4JEKA 3M9VA
chains in the Genus database with same CATH superfamily
1R2JA 4H81A 2Q8FA 4J1VA 5J6AA 1QDBA 2UXWA 3R7KA 3TTBA 4MPEA 2CJ4A 1UDYA 1XFWA 1GKZA 3D9DA 4Q0TA 3VADA 5K3IA 3Q24A 3D9GA 4E00A 2A1TA 2EBFX 4N5FA 2YYKA 1Y8PA 4XVXA 3OIBA 5K3JA 1UKWA 5M4KA 4ZXVA 2DDHA 1FS8A 2JBSA 3SWOA 3MPIA 3EONA 1RP3A 2BU7A 3SXQA 4P79A 1SIRA 2YYGA 3TZ0A 5K3GA 2R05A 4L3XA 4L3ZA 1K90A 2XS1A 4Q5CA 2IX6A 4M9AA 2Q8HA 3RKHA 4DZYA 4KS9A 5BRKA 1JM6A 1Y8OA 2REHA 4Q1OA 3AFEA 1SK6A 1EGEA 2AZEA 3U33A 4FF4A 3TZ2A 4E01A 2D29A 3D2RA 3UBRA 3N0RA 3GM6A 4LQSB 4KCFA 1PK0A 1X8ZA 2J7AA 3TORA 4MP2A 1K8TA 4MPNA 5B5VA 1T9GA 1FS7A 1PI1A 2ZKJA 1GKXA 4L38A 2VR0A 2FONA 2LFWA 5BRMA 2ZO5A 1X91A 2F6LA 2VIGA 3GNCA 4U83A 3OWAA 2OR0A 1GJVA 4X28A 4MP7A 5B6BA 2ZDYA 3SF6A 2BU2A 2BTZA 3TZ5A 1RJ4A 4Q5BA 5GJVE 2R02A 3HWCA 4KSAA 3D1IA 3X0XA 4RM7A 4L3YA 3X29A 2CJ7A 4E02A 2PG0A 1XFZA 1XFUA 2XS8A 3VKHA 2BU6A 5M4MA 2R0NA 1X90A 4KSFA 4FF3A 1LVCA 4V25A 4Q4UA 3C46A 2FP1A 3MPJA 2CJ8A 4FZ4A 3D6BA 2PO4A 1IVHA 3L1TA 3SCEA 3UU9A 3FCJA 2WBIA 5M4PA 4X28C 3TZ4A 2C12A 1EGDA 1SIQA 2JBTA 1XG2B 4O5MA 2YYIA 3II9A 1RX0A 3MXLA 4NXLA 1U8VA 4HKRA 2YYMA 3D9FA 3CRLA 4FF2A 3CRKA 3Q23A 2R0MA 4AI6A 2EBAA 4Q17A 4AKHA 3D9EA 2Q8IA 1R3BA 5EZ3A 1XFYA 5GJWE 3OWMA 4QICA 2OT4A 1SC5A 2OEVA 3DJLA 3MDEA 5J71A 1IS2A 3P4TA 2OEXA 1S26A 2OJQA 4F0XA 4LQQB 2RFQA 4L1FA 2E81A 4P13A 2IX5A 2BU5A 3VKGA 3CE2A 4HKSA 3MMOA 4AKGA 1FS9A 1XFXA 3BNFA 2Q8GA 4W9UA 2GBBA 3LG1A 4JIZA 4IRNA 4HR3A 2VF1A 2YYJA 5M4NA 3C3LA 2ZDXA 1W07A 4FF1A 2EBHX 3X0YA 2JIFA 1OAHA 1Y0VA 2Z1QA 2E80A 4H7QA 1GU6A 1EGCA 2CX9A 2CJ6A 2FP2A 3EOMA 3LGQA 4MPCA 2AO2A 3F29A 3S7WA 4G5EA 4ZYJA 3Q0AA 3GQTA 2DVLA 2PNRA 3BNJA 3NF4A 2EC5A 3PFDA 3BNGA 4H85A 2RDZA 3Q22A 3MKHA 3B96A 1Y8NA 2HJNA 4DOYA 4AKIA 1JQIA 1RJ1A 2RF7A 2BU8A 2XQRB 2YYLA 4IV6A 2R03A 3AFFA 3BNHA 1WS9A 1BUCA 2YGWA 2ZAFA 4JIOA 4V26A 4WJYA 3KMLA 4KTOA 1XFVA 3FO3A 2CJ5A 4G97A 2JBRA 2QR4A 2C0UA 1K93A 3MDDA 2E0AA 5K3HA 5B5WA 3C2PA 4OO2A 4JEKA 3M9VA
chains in the Genus database with same CATH topology
1R2JA 1QDBA 2UXWA 3R7KA 3TTBA 1UDYA 3D9DA 4Q0TA 5K3IA 3D9GA 2A1TA 2YYKA 4N5FA 4XVXA 3OIBA 5K3JA 1UKWA 4ZXVA 2DDHA 1FS8A 2JBSA 3SWOA 3MPIA 3EONA 3SXQA 1SIRA 2YYGA 5K3GA 4L3XA 4L3ZA 4Q5CA 3RKHA 2IX6A 4M9AA 2REHA 4Q1OA 3AFEA 1EGEA 2D29A 3UBRA 3GM6A 3TORA 4KCFA 2J7AA 1T9GA 1FS7A 4L38A 2VR0A 2FONA 2ZO5A 2VIGA 3GNCA 4U83A 3OWAA 2OR0A 4X28A 3SF6A 4Q5BA 3HWCA 3D1IA 3X0XA 4RM7A 4L3YA 2PG0A 2R0NA 4Q4UA 3MPJA 3D6BA 1IVHA 3L1TA 3SCEA 3UU9A 3FCJA 2WBIA 4X28C 2C12A 1EGDA 1SIQA 2JBTA 4O5MA 2YYIA 3II9A 1RX0A 3MXLA 4NXLA 1U8VA 2YYMA 3D9FA 2R0MA 2EBAA 4Q17A 3D9EA 3OWMA 2OT4A 3MDEA 1IS2A 3P4TA 2RFQA 4L1FA 2E81A 4P13A 2IX5A 3MMOA 1FS9A 3BNFA 4W9UA 3LG1A 4IRNA 4HR3A 2YYJA 1W07A 3X0YA 2JIFA 1OAHA 2E80A 2Z1QA 1GU6A 1EGCA 2CX9A 3LGQA 3EOMA 3F29A 3S7WA 4G5EA 4ZYJA 3GQTA 2DVLA 3BNJA 3NF4A 3PFDA 3BNGA 2RDZA 3MKHA 3B96A 4DOYA 1JQIA 2RF7A 2YYLA 4IV6A 3BNHA 3AFFA 1WS9A 1BUCA 2ZAFA 4WJYA 4KTOA 3FO3A 2JBRA 2C0UA 3MDDA 5K3HA 4OO2A 4JEKA 3M9VA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1R2J A;  1QDB A;  2UXW A;  3R7K A;  3TTB A;  1UDY A;  3D9D A;  4Q0T A;  5K3I A;  3D9G A;  2A1T A;  2YYK A;  4N5F A;  4XVX A;  3OIB A;  5K3J A;  1UKW A;  4ZXV A;  2DDH A;  1FS8 A;  2JBS A;  3SWO A;  3MPI A;  3EON A;  3SXQ A;  1SIR A;  2YYG A;  5K3G A;  4L3X A;  4L3Z A;  4Q5C A;  3RKH A;  2IX6 A;  4M9A A;  2REH A;  4Q1O A;  3AFE A;  1EGE A;  2D29 A;  3UBR A;  3GM6 A;  3TOR A;  4KCF A;  2J7A A;  1T9G A;  1FS7 A;  4L38 A;  2VR0 A;  2FON A;  2ZO5 A;  2VIG A;  3GNC A;  4U83 A;  3OWA A;  2OR0 A;  4X28 A;  3SF6 A;  4Q5B A;  3HWC A;  3D1I A;  3X0X A;  4RM7 A;  4L3Y A;  2PG0 A;  2R0N A;  4Q4U A;  3MPJ A;  3D6B A;  1IVH A;  3L1T A;  3SCE A;  3UU9 A;  3FCJ A;  2WBI A;  4X28 C;  2C12 A;  1EGD A;  1SIQ A;  2JBT A;  4O5M A;  2YYI A;  3II9 A;  1RX0 A;  3MXL A;  4NXL A;  1U8V A;  2YYM A;  3D9F A;  2R0M A;  2EBA A;  4Q17 A;  3D9E A;  3OWM A;  2OT4 A;  3MDE A;  1IS2 A;  3P4T A;  2RFQ A;  4L1F A;  2E81 A;  4P13 A;  2IX5 A;  3MMO A;  1FS9 A;  3BNF A;  4W9U A;  3LG1 A;  4IRN A;  4HR3 A;  2YYJ A;  1W07 A;  3X0Y A;  2JIF A;  1OAH A;  2E80 A;  2Z1Q A;  1GU6 A;  1EGC A;  2CX9 A;  3LGQ A;  3EOM A;  3F29 A;  3S7W A;  4G5E A;  4ZYJ A;  3GQT A;  2DVL A;  3BNJ A;  3NF4 A;  3PFD A;  3BNG A;  2RDZ A;  3MKH A;  3B96 A;  4DOY A;  1JQI A;  2RF7 A;  2YYL A;  4IV6 A;  3BNH A;  3AFF A;  1WS9 A;  1BUC A;  2ZAF A;  4WJY A;  4KTO A;  3FO3 A;  2JBR A;  2C0U A;  3MDD A;  5K3H A;  4OO2 A;  4JEK A;  3M9V A; 
#chains in the Genus database with same CATH topology
 1R2J A;  4H81 A;  2Q8F A;  4J1V A;  5J6A A;  1QDB A;  2UXW A;  3R7K A;  3TTB A;  4MPE A;  2CJ4 A;  1UDY A;  1XFW A;  1GKZ A;  3D9D A;  4Q0T A;  3VAD A;  5K3I A;  3Q24 A;  3D9G A;  4E00 A;  2A1T A;  2EBF X;  4N5F A;  2YYK A;  1Y8P A;  4XVX A;  3OIB A;  5K3J A;  1UKW A;  5M4K A;  4ZXV A;  2DDH A;  1FS8 A;  2JBS A;  3SWO A;  3MPI A;  3EON A;  1RP3 A;  2BU7 A;  3SXQ A;  4P79 A;  1SIR A;  2YYG A;  3TZ0 A;  5K3G A;  2R05 A;  4L3X A;  4L3Z A;  1K90 A;  2XS1 A;  4Q5C A;  2IX6 A;  4M9A A;  2Q8H A;  3RKH A;  4DZY A;  4KS9 A;  5BRK A;  1JM6 A;  1Y8O A;  2REH A;  4Q1O A;  3AFE A;  1SK6 A;  1EGE A;  2AZE A;  3U33 A;  4FF4 A;  3TZ2 A;  4E01 A;  2D29 A;  3D2R A;  3UBR A;  3N0R A;  3GM6 A;  4LQS B;  4KCF A;  1PK0 A;  1X8Z A;  2J7A A;  3TOR A;  4MP2 A;  1K8T A;  4MPN A;  5B5V A;  1T9G A;  1FS7 A;  1PI1 A;  2ZKJ A;  1GKX A;  4L38 A;  2VR0 A;  2FON A;  2LFW A;  5BRM A;  2ZO5 A;  1X91 A;  2F6L A;  2VIG A;  3GNC A;  4U83 A;  3OWA A;  2OR0 A;  1GJV A;  4X28 A;  4MP7 A;  5B6B A;  2ZDY A;  3SF6 A;  2BU2 A;  2BTZ A;  3TZ5 A;  1RJ4 A;  4Q5B A;  5GJV E;  2R02 A;  3HWC A;  4KSA A;  3D1I A;  3X0X A;  4RM7 A;  4L3Y A;  3X29 A;  2CJ7 A;  4E02 A;  2PG0 A;  1XFZ A;  1XFU A;  2XS8 A;  3VKH A;  2BU6 A;  5M4M A;  2R0N A;  1X90 A;  4KSF A;  4FF3 A;  1LVC A;  4V25 A;  4Q4U A;  3C46 A;  2FP1 A;  3MPJ A;  2CJ8 A;  4FZ4 A;  3D6B A;  2PO4 A;  1IVH A;  3L1T A;  3SCE A;  3UU9 A;  3FCJ A;  2WBI A;  5M4P A;  4X28 C;  3TZ4 A;  2C12 A;  1EGD A;  1SIQ A;  2JBT A;  1XG2 B;  4O5M A;  2YYI A;  3II9 A;  1RX0 A;  3MXL A;  4NXL A;  1U8V A;  4HKR A;  2YYM A;  3D9F A;  3CRL A;  4FF2 A;  3CRK A;  3Q23 A;  2R0M A;  4AI6 A;  2EBA A;  4Q17 A;  4AKH A;  3D9E A;  2Q8I A;  1R3B A;  5EZ3 A;  1XFY A;  5GJW E;  3OWM A;  4QIC A;  2OT4 A;  1SC5 A;  2OEV A;  3DJL A;  3MDE A;  5J71 A;  1IS2 A;  3P4T A;  2OEX A;  1S26 A;  2OJQ A;  4F0X A;  4LQQ B;  2RFQ A;  4L1F A;  2E81 A;  4P13 A;  2IX5 A;  2BU5 A;  3VKG A;  3CE2 A;  4HKS A;  3MMO A;  4AKG A;  1FS9 A;  1XFX A;  3BNF A;  2Q8G A;  4W9U A;  2GBB A;  3LG1 A;  4JIZ A;  4IRN A;  4HR3 A;  2VF1 A;  2YYJ A;  5M4N A;  3C3L A;  2ZDX A;  1W07 A;  4FF1 A;  2EBH X;  3X0Y A;  2JIF A;  1OAH A;  1Y0V A;  2Z1Q A;  2E80 A;  4H7Q A;  1GU6 A;  1EGC A;  2CX9 A;  2CJ6 A;  2FP2 A;  3EOM A;  3LGQ A;  4MPC A;  2AO2 A;  3F29 A;  3S7W A;  4G5E A;  4ZYJ A;  3Q0A A;  3GQT A;  2DVL A;  2PNR A;  3BNJ A;  3NF4 A;  2EC5 A;  3PFD A;  3BNG A;  4H85 A;  2RDZ A;  3Q22 A;  3MKH A;  3B96 A;  1Y8N A;  2HJN A;  4DOY A;  4AKI A;  1JQI A;  1RJ1 A;  2RF7 A;  2BU8 A;  2XQR B;  2YYL A;  4IV6 A;  2R03 A;  3AFF A;  3BNH A;  1WS9 A;  1BUC A;  2YGW A;  2ZAF A;  4JIO A;  4V26 A;  4WJY A;  3KML A;  4KTO A;  1XFV A;  3FO3 A;  2CJ5 A;  4G97 A;  2JBR A;  2QR4 A;  2C0U A;  1K93 A;  3MDD A;  2E0A A;  5K3H A;  5B5W A;  3C2P A;  4OO2 A;  4JEK A;  3M9V A; 
#chains in the Genus database with same CATH homology
 1R2J A;  1QDB A;  2UXW A;  3R7K A;  3TTB A;  1UDY A;  3D9D A;  4Q0T A;  5K3I A;  3D9G A;  2A1T A;  2YYK A;  4N5F A;  4XVX A;  3OIB A;  5K3J A;  1UKW A;  4ZXV A;  2DDH A;  1FS8 A;  2JBS A;  3SWO A;  3MPI A;  3EON A;  3SXQ A;  1SIR A;  2YYG A;  5K3G A;  4L3X A;  4L3Z A;  4Q5C A;  3RKH A;  2IX6 A;  4M9A A;  2REH A;  4Q1O A;  3AFE A;  1EGE A;  2D29 A;  3UBR A;  3GM6 A;  3TOR A;  4KCF A;  2J7A A;  1T9G A;  1FS7 A;  4L38 A;  2VR0 A;  2FON A;  2ZO5 A;  2VIG A;  3GNC A;  4U83 A;  3OWA A;  2OR0 A;  4X28 A;  3SF6 A;  4Q5B A;  3HWC A;  3D1I A;  3X0X A;  4RM7 A;  4L3Y A;  2PG0 A;  2R0N A;  4Q4U A;  3MPJ A;  3D6B A;  1IVH A;  3L1T A;  3SCE A;  3UU9 A;  3FCJ A;  2WBI A;  4X28 C;  2C12 A;  1EGD A;  1SIQ A;  2JBT A;  4O5M A;  2YYI A;  3II9 A;  1RX0 A;  3MXL A;  4NXL A;  1U8V A;  2YYM A;  3D9F A;  2R0M A;  2EBA A;  4Q17 A;  3D9E A;  3OWM A;  2OT4 A;  3MDE A;  1IS2 A;  3P4T A;  2RFQ A;  4L1F A;  2E81 A;  4P13 A;  2IX5 A;  3MMO A;  1FS9 A;  3BNF A;  4W9U A;  3LG1 A;  4IRN A;  4HR3 A;  2YYJ A;  1W07 A;  3X0Y A;  2JIF A;  1OAH A;  2E80 A;  2Z1Q A;  1GU6 A;  1EGC A;  2CX9 A;  3LGQ A;  3EOM A;  3F29 A;  3S7W A;  4G5E A;  4ZYJ A;  3GQT A;  2DVL A;  3BNJ A;  3NF4 A;  3PFD A;  3BNG A;  2RDZ A;  3MKH A;  3B96 A;  4DOY A;  1JQI A;  2RF7 A;  2YYL A;  4IV6 A;  3BNH A;  3AFF A;  1WS9 A;  1BUC A;  2ZAF A;  4WJY A;  4KTO A;  3FO3 A;  2JBR A;  2C0U A;  3MDD A;  5K3H A;  4OO2 A;  4JEK A;  3M9V A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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