3M9VA

X-ray structure of a kijd3 in complex with dtdp
Total Genus 144
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
144
sequence length
394
structure length
390
Chain Sequence
STTGLYAPVTPAGRVLLDRLAAHLPRIRSTAAEHDRDGTFPTDTFDALRKDGLMGATVPAELGGLGVDRLYDVAVALLAVARADASTALALHMQLSRGLTLGYEWRHGDERARTLAERILRGMVAGDAVVCSGIKDHHTAVTTLRPDGAGGWLLSGRKTLVSMAPVGTHFVINARTDGGPPRLASPVVTRDTPGFTVLDNWDGLGMRASGTVDIVFDDCPIPADHVLMRDPARNDAVLAGQTVSSVSVLGVYVGVAQAAYDTAVAALERRPEPPQAAALTLVAEIDSRLYALRATAGSALTAADALSADLSGDMDERGRQMMRHFQCAKLAVNRLAPEIVSDCLSLVGGASYTAGHPLARLLRDVQAGRFMQPYAYVDAVDFLSAQALGI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords FAD-dependent oxidoreductase
publication title X-ray structure of kijd3, a key enzyme involved in the biosynthesis of D-kijanose.
pubmed doi rcsb
source organism Actinomadura kijaniata
total genus 144
structure length 390
sequence length 394
ec nomenclature
pdb deposition date 2010-03-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00441 Acyl-CoA_dh_1 Acyl-CoA dehydrogenase, C-terminal domain
A PF02770 Acyl-CoA_dh_M Acyl-CoA dehydrogenase, middle domain
A PF02771 Acyl-CoA_dh_N Acyl-CoA dehydrogenase, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.540.10 Mainly Alpha Orthogonal Bundle Butyryl-Coa Dehydrogenase, subunit A; domain 1 Acyl-CoA dehydrogenase/oxidase, N-terminal domain 3m9vA01
1.20.140.10 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A; domain 3 Butyryl-CoA Dehydrogenase, subunit A, domain 3 3m9vA03
2.40.110.10 Mainly Beta Beta Barrel Butyryl-CoA Dehydrogenase, subunit A; domain 2 Butyryl-CoA Dehydrogenase, subunit A, domain 2 3m9vA02
3MKHA 4IV6A 1JQIA 3BNJA 3X0XA 3GNCA 5K3IA 3MMOA 3TTBA 3MPIA 4DOYA 2EBAA 4OO2A 4ZXVA 4HR3A 2YYMA 3OWAA 3D9FA 4KCFA 3D9DA 1FS7A 3R7KA 3MDEA 2YYIA 3OWMA 4ZYJA 2YYKA 1UDYA 2VIGA 3EOMA 1SIQA 1BUCA 1IS2A 1WS9A 4W9UA 3HWCA 3BNFA 2E81A 2IX5A 1FS9A 3BNHA 2CX9A 3OIBA 2JBSA 3B96A 3LG1A 1RX0A 1GU6A 4Q4UA 4U83A 4L38A 2C12A 1R2JA 3NF4A 2RFQA 4NXLA 3SCEA 2IX6A 3PFDA 4M9AA 5K3HA 2J7AA 1IVHA 3F29A 3SF6A 1W07A 3P4TA 3GQTA 2YYGA 3II9A 3TORA 2YYJA 4WJYA 2JBTA 3MPJA 1EGEA 3RKHA 1QDBA 1T9GA 3X0YA 3FCJA 1FS8A 1OAHA 2Z1QA 5K3JA 4P13A 2REHA 3GM6A 4L3ZA 4X28C 4Q5CA 2VR0A 4Q17A 3EONA 4KTOA 4O5MA 2ZAFA 1EGDA 2DDHA 2D29A 2JBRA 3UU9A 2A1TA 4IRNA 3SWOA 4XVXA 2ZO5A 3FO3A 2E80A 3AFEA 4Q0TA 3MDDA 2R0NA 4L1FA 2UXWA 2C0UA 4Q1OA 3UBRA 3AFFA 1UKWA 4G5EA 2RF7A 4N5FA 4JEKA 3D9EA 3D9GA 3D1IA 4X28A 3S7WA 3L1TA 2DVLA 3MXLA 4RM7A 1EGCA 4L3YA 2OT4A 3BNGA 2PG0A 2R0MA 3D6BA 1U8VA 4Q5BA 1SIRA 3LGQA 4L3XA 3SXQA 2JIFA 2WBIA 2RDZA 5K3GA 2OR0A 2YYLA 2FONA 3M9VA
chains in the Genus database with same CATH superfamily
3MKHA 4IV6A 1JQIA 3TZ0A 3BNJA 5EZ3A 3X0XA 4MPEA 4P79A 3GNCA 5B5WA 2BTZA 1LVCA 5K3IA 2EBHX 3MMOA 3MPIA 3TTBA 3TZ5A 5M4PA 4DOYA 1Y8NA 2EBAA 3BNHA 4HKSA 4OO2A 4AKHA 4ZXVA 4HR3A 2CJ8A 2YYMA 2ZKJA 3C3LA 3OWAA 3D9FA 4KCFA 3D9DA 1FS7A 4FF2A 2Q8IA 3R7KA 3MDEA 2YYIA 4V26A 2F6LA 3OWMA 4ZYJA 2YYKA 2Q8FA 1UDYA 2VIGA 3EOMA 3DJLA 1GKZA 4J1VA 1SIQA 4JIZA 3Q0AA 4QICA 3Q23A 1XFZA 1BUCA 5M4KA 3VKGA 1IS2A 1WS9A 4W9UA 2OEXA 2QR4A 2R05A 1R3BA 3BNFA 2BU7A 3CRLA 3HWCA 3VADA 2E81A 2IX5A 1FS9A 1XFYA 2CX9A 3OIBA 2XS8A 2JBSA 3B96A 2PO4A 1S26A 2YGWA 1Y8OA 3LG1A 4H85A 4JIOA 2Q8HA 1XFVA 1RX0A 1GU6A 4FF1A 4Q4UA 4U83A 2BU5A 2ZDYA 5GJVE 4L38A 1SK6A 2C12A 1R2JA 2BU6A 3NF4A 2RFQA 4NXLA 3SCEA 4E01A 2AZEA 2IX6A 3PFDA 3Q24A 4M9AA 5K3HA 2J7AA 4E00A 1IVHA 3F29A 3SF6A 1W07A 1Y0VA 3P4TA 2ZDXA 3GQTA 2YYGA 3II9A 3TORA 4LQSB 2YYJA 4WJYA 2JBTA 3CRKA 3MPJA 1JM6A 1EGEA 2E0AA 3RKHA 1QDBA 1T9GA 3X0YA 1X90A 3FCJA 1FS8A 2EC5A 2XQRB 3D2RA 4HKRA 4V25A 4AKIA 1OAHA 2Z1QA 2AO2A 2FP2A 5K3JA 2R03A 4P13A 2GBBA 2R02A 2REHA 3GM6A 4L3ZA 4X28C 3TZ4A 1RJ1A 5B5VA 4Q5CA 2VR0A 4Q17A 3EONA 4KTOA 3CE2A 4O5MA 3N0RA 3X29A 2ZAFA 1EGDA 2DDHA 1PI1A 2D29A 2JBRA 5J71A 3UU9A 2A1TA 4IRNA 3SWOA 1XFXA 4XVXA 5GJWE 2ZO5A 3FO3A 3KMLA 2E80A 4FZ4A 4H7QA 3AFEA 4Q0TA 3MDDA 2XS1A 4H81A 4MPNA 1GJVA 2R0NA 4L1FA 2UXWA 5J6AA 2C0UA 4Q1OA 1XFWA 2VF1A 3UBRA 3AFFA 1UKWA 2Q8GA 3Q22A 4G5EA 1K90A 2RF7A 5M4MA 4N5FA 3U33A 1K93A 4JEKA 1K8TA 3D9EA 3D9GA 1GKXA 3TZ2A 3D1IA 4X28A 3S7WA 3C46A 3L1TA 2DVLA 4FF4A 4DZYA 3MXLA 4E02A 1Y8PA 4RM7A 4MPCA 5B6BA 1EGCA 4L3YA 1XG2B 1X8ZA 4AI6A 5BRMA 2CJ7A 4KSAA 2OEVA 1SC5A 4AKGA 4MP7A 2OT4A 3BNGA 4F0XA 2PG0A 2R0MA 3D6BA 2CJ4A 1U8VA 2FP1A 5BRKA 2OJQA 2BU8A 2CJ5A 2BU2A 4Q5BA 1RP3A 2CJ6A 1SIRA 1XFUA 3C2PA 2LFWA 4FF3A 3LGQA 4L3XA 1RJ4A 2HJNA 2JIFA 2WBIA 4KS9A 4G97A 2EBFX 2PNRA 2RDZA 4KSFA 5M4NA 5K3GA 2OR0A 3VKHA 1PK0A 1X91A 4LQQB 2YYLA 2FONA 4MP2A 3M9VA 3SXQA
chains in the Genus database with same CATH topology
3MKHA 4IV6A 1JQIA 3BNJA 3X0XA 3GNCA 5K3IA 3MMOA 3TTBA 3MPIA 4DOYA 2EBAA 4OO2A 4ZXVA 4HR3A 2YYMA 3OWAA 3D9FA 4KCFA 3D9DA 1FS7A 3R7KA 3MDEA 2YYIA 3OWMA 4ZYJA 2YYKA 1UDYA 2VIGA 3EOMA 1SIQA 1BUCA 1IS2A 1WS9A 4W9UA 3HWCA 3BNFA 2E81A 2IX5A 1FS9A 3BNHA 2CX9A 3OIBA 2JBSA 3B96A 3LG1A 1RX0A 1GU6A 4Q4UA 4U83A 4L38A 2C12A 1R2JA 3NF4A 2RFQA 4NXLA 3SCEA 2IX6A 3PFDA 4M9AA 5K3HA 2J7AA 1IVHA 3F29A 3SF6A 1W07A 3P4TA 3GQTA 2YYGA 3II9A 3TORA 2YYJA 4WJYA 2JBTA 3MPJA 1EGEA 3RKHA 1QDBA 1T9GA 3X0YA 3FCJA 1FS8A 1OAHA 2Z1QA 5K3JA 4P13A 2REHA 3GM6A 4L3ZA 4X28C 4Q5CA 2VR0A 4Q17A 3EONA 4KTOA 4O5MA 2ZAFA 1EGDA 2DDHA 2D29A 2JBRA 3UU9A 2A1TA 4IRNA 3SWOA 4XVXA 2ZO5A 3FO3A 2E80A 3AFEA 4Q0TA 3MDDA 2R0NA 4L1FA 2UXWA 2C0UA 4Q1OA 3UBRA 3AFFA 1UKWA 4G5EA 2RF7A 4N5FA 4JEKA 3D9EA 3D9GA 3D1IA 4X28A 3S7WA 3L1TA 2DVLA 3MXLA 4RM7A 1EGCA 4L3YA 2OT4A 3BNGA 2PG0A 2R0MA 3D6BA 1U8VA 4Q5BA 1SIRA 3LGQA 4L3XA 3SXQA 2JIFA 2WBIA 2RDZA 5K3GA 2OR0A 2YYLA 2FONA 3M9VA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3MKH A;  4IV6 A;  1JQI A;  3BNJ A;  3X0X A;  3GNC A;  5K3I A;  3MMO A;  3TTB A;  3MPI A;  4DOY A;  2EBA A;  4OO2 A;  4ZXV A;  4HR3 A;  2YYM A;  3OWA A;  3D9F A;  4KCF A;  3D9D A;  1FS7 A;  3R7K A;  3MDE A;  2YYI A;  3OWM A;  4ZYJ A;  2YYK A;  1UDY A;  2VIG A;  3EOM A;  1SIQ A;  1BUC A;  1IS2 A;  1WS9 A;  4W9U A;  3HWC A;  3BNF A;  2E81 A;  2IX5 A;  1FS9 A;  3BNH A;  2CX9 A;  3OIB A;  2JBS A;  3B96 A;  3LG1 A;  1RX0 A;  1GU6 A;  4Q4U A;  4U83 A;  4L38 A;  2C12 A;  1R2J A;  3NF4 A;  2RFQ A;  4NXL A;  3SCE A;  2IX6 A;  3PFD A;  4M9A A;  5K3H A;  2J7A A;  1IVH A;  3F29 A;  3SF6 A;  1W07 A;  3P4T A;  3GQT A;  2YYG A;  3II9 A;  3TOR A;  2YYJ A;  4WJY A;  2JBT A;  3MPJ A;  1EGE A;  3RKH A;  1QDB A;  1T9G A;  3X0Y A;  3FCJ A;  1FS8 A;  1OAH A;  2Z1Q A;  5K3J A;  4P13 A;  2REH A;  3GM6 A;  4L3Z A;  4X28 C;  4Q5C A;  2VR0 A;  4Q17 A;  3EON A;  4KTO A;  4O5M A;  2ZAF A;  1EGD A;  2DDH A;  2D29 A;  2JBR A;  3UU9 A;  2A1T A;  4IRN A;  3SWO A;  4XVX A;  2ZO5 A;  3FO3 A;  2E80 A;  3AFE A;  4Q0T A;  3MDD A;  2R0N A;  4L1F A;  2UXW A;  2C0U A;  4Q1O A;  3UBR A;  3AFF A;  1UKW A;  4G5E A;  2RF7 A;  4N5F A;  4JEK A;  3D9E A;  3D9G A;  3D1I A;  4X28 A;  3S7W A;  3L1T A;  2DVL A;  3MXL A;  4RM7 A;  1EGC A;  4L3Y A;  2OT4 A;  3BNG A;  2PG0 A;  2R0M A;  3D6B A;  1U8V A;  4Q5B A;  1SIR A;  3LGQ A;  4L3X A;  3SXQ A;  2JIF A;  2WBI A;  2RDZ A;  5K3G A;  2OR0 A;  2YYL A;  2FON A;  3M9V A; 
#chains in the Genus database with same CATH topology
 3MKH A;  4IV6 A;  1JQI A;  3TZ0 A;  3BNJ A;  5EZ3 A;  3X0X A;  4MPE A;  4P79 A;  3GNC A;  5B5W A;  2BTZ A;  1LVC A;  5K3I A;  2EBH X;  3MMO A;  3MPI A;  3TTB A;  3TZ5 A;  5M4P A;  4DOY A;  1Y8N A;  2EBA A;  3BNH A;  4HKS A;  4OO2 A;  4AKH A;  4ZXV A;  4HR3 A;  2CJ8 A;  2YYM A;  2ZKJ A;  3C3L A;  3OWA A;  3D9F A;  4KCF A;  3D9D A;  1FS7 A;  4FF2 A;  2Q8I A;  3R7K A;  3MDE A;  2YYI A;  4V26 A;  2F6L A;  3OWM A;  4ZYJ A;  2YYK A;  2Q8F A;  1UDY A;  2VIG A;  3EOM A;  3DJL A;  1GKZ A;  4J1V A;  1SIQ A;  4JIZ A;  3Q0A A;  4QIC A;  3Q23 A;  1XFZ A;  1BUC A;  5M4K A;  3VKG A;  1IS2 A;  1WS9 A;  4W9U A;  2OEX A;  2QR4 A;  2R05 A;  1R3B A;  3BNF A;  2BU7 A;  3CRL A;  3HWC A;  3VAD A;  2E81 A;  2IX5 A;  1FS9 A;  1XFY A;  2CX9 A;  3OIB A;  2XS8 A;  2JBS A;  3B96 A;  2PO4 A;  1S26 A;  2YGW A;  1Y8O A;  3LG1 A;  4H85 A;  4JIO A;  2Q8H A;  1XFV A;  1RX0 A;  1GU6 A;  4FF1 A;  4Q4U A;  4U83 A;  2BU5 A;  2ZDY A;  5GJV E;  4L38 A;  1SK6 A;  2C12 A;  1R2J A;  2BU6 A;  3NF4 A;  2RFQ A;  4NXL A;  3SCE A;  4E01 A;  2AZE A;  2IX6 A;  3PFD A;  3Q24 A;  4M9A A;  5K3H A;  2J7A A;  4E00 A;  1IVH A;  3F29 A;  3SF6 A;  1W07 A;  1Y0V A;  3P4T A;  2ZDX A;  3GQT A;  2YYG A;  3II9 A;  3TOR A;  4LQS B;  2YYJ A;  4WJY A;  2JBT A;  3CRK A;  3MPJ A;  1JM6 A;  1EGE A;  2E0A A;  3RKH A;  1QDB A;  1T9G A;  3X0Y A;  1X90 A;  3FCJ A;  1FS8 A;  2EC5 A;  2XQR B;  3D2R A;  4HKR A;  4V25 A;  4AKI A;  1OAH A;  2Z1Q A;  2AO2 A;  2FP2 A;  5K3J A;  2R03 A;  4P13 A;  2GBB A;  2R02 A;  2REH A;  3GM6 A;  4L3Z A;  4X28 C;  3TZ4 A;  1RJ1 A;  5B5V A;  4Q5C A;  2VR0 A;  4Q17 A;  3EON A;  4KTO A;  3CE2 A;  4O5M A;  3N0R A;  3X29 A;  2ZAF A;  1EGD A;  2DDH A;  1PI1 A;  2D29 A;  2JBR A;  5J71 A;  3UU9 A;  2A1T A;  4IRN A;  3SWO A;  1XFX A;  4XVX A;  5GJW E;  2ZO5 A;  3FO3 A;  3KML A;  2E80 A;  4FZ4 A;  4H7Q A;  3AFE A;  4Q0T A;  3MDD A;  2XS1 A;  4H81 A;  4MPN A;  1GJV A;  2R0N A;  4L1F A;  2UXW A;  5J6A A;  2C0U A;  4Q1O A;  1XFW A;  2VF1 A;  3UBR A;  3AFF A;  1UKW A;  2Q8G A;  3Q22 A;  4G5E A;  1K90 A;  2RF7 A;  5M4M A;  4N5F A;  3U33 A;  1K93 A;  4JEK A;  1K8T A;  3D9E A;  3D9G A;  1GKX A;  3TZ2 A;  3D1I A;  4X28 A;  3S7W A;  3C46 A;  3L1T A;  2DVL A;  4FF4 A;  4DZY A;  3MXL A;  4E02 A;  1Y8P A;  4RM7 A;  4MPC A;  5B6B A;  1EGC A;  4L3Y A;  1XG2 B;  1X8Z A;  4AI6 A;  5BRM A;  2CJ7 A;  4KSA A;  2OEV A;  1SC5 A;  4AKG A;  4MP7 A;  2OT4 A;  3BNG A;  4F0X A;  2PG0 A;  2R0M A;  3D6B A;  2CJ4 A;  1U8V A;  2FP1 A;  5BRK A;  2OJQ A;  2BU8 A;  2CJ5 A;  2BU2 A;  4Q5B A;  1RP3 A;  2CJ6 A;  1SIR A;  1XFU A;  3C2P A;  2LFW A;  4FF3 A;  3LGQ A;  4L3X A;  1RJ4 A;  2HJN A;  2JIF A;  2WBI A;  4KS9 A;  4G97 A;  2EBF X;  2PNR A;  2RDZ A;  4KSF A;  5M4N A;  5K3G A;  2OR0 A;  3VKH A;  1PK0 A;  1X91 A;  4LQQ B;  2YYL A;  2FON A;  4MP2 A;  3M9V A;  3SXQ A; 
#chains in the Genus database with same CATH homology
 3MKH A;  4IV6 A;  1JQI A;  3BNJ A;  3X0X A;  3GNC A;  5K3I A;  3MMO A;  3TTB A;  3MPI A;  4DOY A;  2EBA A;  4OO2 A;  4ZXV A;  4HR3 A;  2YYM A;  3OWA A;  3D9F A;  4KCF A;  3D9D A;  1FS7 A;  3R7K A;  3MDE A;  2YYI A;  3OWM A;  4ZYJ A;  2YYK A;  1UDY A;  2VIG A;  3EOM A;  1SIQ A;  1BUC A;  1IS2 A;  1WS9 A;  4W9U A;  3HWC A;  3BNF A;  2E81 A;  2IX5 A;  1FS9 A;  3BNH A;  2CX9 A;  3OIB A;  2JBS A;  3B96 A;  3LG1 A;  1RX0 A;  1GU6 A;  4Q4U A;  4U83 A;  4L38 A;  2C12 A;  1R2J A;  3NF4 A;  2RFQ A;  4NXL A;  3SCE A;  2IX6 A;  3PFD A;  4M9A A;  5K3H A;  2J7A A;  1IVH A;  3F29 A;  3SF6 A;  1W07 A;  3P4T A;  3GQT A;  2YYG A;  3II9 A;  3TOR A;  2YYJ A;  4WJY A;  2JBT A;  3MPJ A;  1EGE A;  3RKH A;  1QDB A;  1T9G A;  3X0Y A;  3FCJ A;  1FS8 A;  1OAH A;  2Z1Q A;  5K3J A;  4P13 A;  2REH A;  3GM6 A;  4L3Z A;  4X28 C;  4Q5C A;  2VR0 A;  4Q17 A;  3EON A;  4KTO A;  4O5M A;  2ZAF A;  1EGD A;  2DDH A;  2D29 A;  2JBR A;  3UU9 A;  2A1T A;  4IRN A;  3SWO A;  4XVX A;  2ZO5 A;  3FO3 A;  2E80 A;  3AFE A;  4Q0T A;  3MDD A;  2R0N A;  4L1F A;  2UXW A;  2C0U A;  4Q1O A;  3UBR A;  3AFF A;  1UKW A;  4G5E A;  2RF7 A;  4N5F A;  4JEK A;  3D9E A;  3D9G A;  3D1I A;  4X28 A;  3S7W A;  3L1T A;  2DVL A;  3MXL A;  4RM7 A;  1EGC A;  4L3Y A;  2OT4 A;  3BNG A;  2PG0 A;  2R0M A;  3D6B A;  1U8V A;  4Q5B A;  1SIR A;  3LGQ A;  4L3X A;  3SXQ A;  2JIF A;  2WBI A;  2RDZ A;  5K3G A;  2OR0 A;  2YYL A;  2FON A;  3M9V A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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