3M9VA

X-ray structure of a kijd3 in complex with dtdp
Total Genus 144
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
144
sequence length
394
structure length
390
Chain Sequence
b'STTGLYAPVTPAGRVLLDRLAAHLPRIRSTAAEHDRDGTFPTDTFDALRKDGLMGATVPAELGGLGVDRLYDVAVALLAVARADASTALALHMQLSRGLTLGYEWRHGDERARTLAERILRGMVAGDAVVCSGIKDHHTAVTTLRPDGAGGWLLSGRKTLVSMAPVGTHFVINARTDGGPPRLASPVVTRDTPGFTVLDNWDGLGMRASGTVDIVFDDCPIPADHVLMRDPARNDAVLAGQTVSSVSVLGVYVGVAQAAYDTAVAALERRPEPPQAAALTLVAEIDSRLYALRATAGSALTAADALSADLSGDMDERGRQMMRHFQCAKLAVNRLAPEIVSDCLSLVGGASYTAGHPLARLLRDVQAGRFMQPYAYVDAVDFLSAQALGI'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords FAD-dependent oxidoreductase
publication title X-ray structure of kijd3, a key enzyme involved in the biosynthesis of D-kijanose.
pubmed doi rcsb
source organism Actinomadura kijaniata
molecule tags Oxidoreductase
total genus 144
structure length 390
sequence length 394
ec nomenclature
pdb deposition date 2010-03-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00441 Acyl-CoA_dh_1 Acyl-CoA dehydrogenase, C-terminal domain
A PF02770 Acyl-CoA_dh_M Acyl-CoA dehydrogenase, middle domain
A PF02771 Acyl-CoA_dh_N Acyl-CoA dehydrogenase, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.540.10 Mainly Alpha Orthogonal Bundle Butyryl-Coa Dehydrogenase, subunit A; domain 1 Acyl-CoA dehydrogenase/oxidase, N-terminal domain 3m9vA01
1.20.140.10 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A; domain 3 Butyryl-CoA Dehydrogenase, subunit A, domain 3 3m9vA03
2.40.110.10 Mainly Beta Beta Barrel Butyryl-CoA Dehydrogenase, subunit A; domain 2 Butyryl-CoA Dehydrogenase, subunit A, domain 2 3m9vA02
4RM7A 3D1IA 1T9GA 3D9EA 4HR3A 4NXLA 2JIFA 3BNFA 1GU6A 2RF7A 2ZO5A 4JEKA 3M9VA 4WJYA 3B96A 3GM6A 2REHA 2DVLA 4Q5CA 3GQTA 3UU9A 4W9UA 2C12A 3MDDA 4KTOA 2D29A 2YYGA 1OAHA 3AFEA 3D9FA 3OIBA 3LG1A 4ZYJA 3SCEA 3PFDA 1W07A 2C0UA 1BUCA 4O5MA 4Q17A 3X0YA 3MXLA 2E80A 2CX9A 1UDYA 2UXWA 2YYLA 2EBAA 3P4TA 3D6BA 2A1TA 3BNJA 5K3GA 4OO2A 2IX6A 1UKWA 4L3YA 1EGDA 2J7AA 4L3ZA 3BNGA 4L3XA 2YYIA 3OWMA 4Q1OA 3D9GA 2YYKA 2IX5A 2YYJA 2JBRA 2JBSA 1SIRA 4ZXVA 2R0NA 3D9DA 5K3JA 1WS9A 2OR0A 4IRNA 4IV6A 1QDBA 1IVHA 2RFQA 5K3IA 4KCFA 3MPIA 4N5FA 2Z1QA 2JBTA 4M9AA 2VR0A 1JQIA 4XVXA 2DDHA 1EGEA 4G5EA 3MDEA 3MPJA 3EOMA 3HWCA 3NF4A 3TTBA 2R0MA 3GNCA 3F29A 2YYMA 4X28C 3R7KA 1R2JA 3X0XA 3OWAA 1FS8A 3RKHA 3LGQA 2VIGA 2OT4A 4L38A 3EONA 3FCJA 5K3HA 2RDZA 3MMOA 3BNHA 3UBRA 3MKHA 3SWOA 4U83A 1FS9A 1FS7A 1EGCA 4X28A 3SF6A 1U8VA 3AFFA 2FONA 4L1FA 3SXQA 2ZAFA 3TORA 2WBIA 1SIQA 4Q5BA 2PG0A 3L1TA 3FO3A 4Q4UA 2E81A 3S7WA 4DOYA 4Q0TA 4P13A 1IS2A 3II9A 1RX0A
chains in the Genus database with same CATH superfamily
4RM7A 3CE2A 3C2PA 1SC5A 4JIOA 1XFUA 2CJ6A 3Q23A 3D1IA 1T9GA 3D9EA 4HR3A 4NXLA 2JIFA 3BNFA 2QR4A 1GU6A 4G97A 2CJ5A 2Q8FA 2RF7A 2BU8A 2LFWA 2ZO5A 3N0RA 3C46A 5J6AA 4JEKA 3M9VA 4WJYA 3Q0AA 4KSFA 3B96A 2R05A 3GM6A 4HKRA 2REHA 2DVLA 4Q5CA 3GQTA 3UU9A 4FF4A 5B5VA 4W9UA 4JIZA 2C12A 4DZYA 3MDDA 4KTOA 2HJNA 1XFVA 2D29A 1GJVA 2ZKJA 2AO2A 1JM6A 1OAHA 3AFEA 2YYGA 3D9FA 3OIBA 2VF1A 4QICA 5M4MA 3LG1A 4ZYJA 2FP1A 3SCEA 1PI1A 3PFDA 2R02A 1W07A 2C0UA 1BUCA 4O5MA 4Q17A 3X0YA 3MXLA 4E00A 2E80A 4KSAA 2CX9A 1UDYA 4H81A 2BU6A 2CJ8A 2UXWA 2YYLA 4E02A 2EBAA 2PNRA 3P4TA 1SK6A 3CRKA 3D6BA 2A1TA 2ZDYA 3BNJA 2ZDXA 5K3GA 4OO2A 2IX6A 1UKWA 1K90A 4L3YA 1EGDA 2J7AA 5J71A 3Q24A 4MPEA 4FF1A 4L3ZA 3BNGA 2R03A 2Q8IA 1R3BA 1GKXA 3KMLA 4FF3A 1Y8OA 4L3XA 2YYIA 3OWMA 4Q1OA 3D9GA 2YYKA 2IX5A 2XS1A 2YYJA 2JBRA 2JBSA 1SIRA 4ZXVA 4AKIA 2R0NA 5M4PA 4AKGA 3D9DA 5K3JA 4V26A 1WS9A 2OR0A 4IRNA 4IV6A 1QDBA 1X8ZA 1IVHA 1Y0VA 2BTZA 2E0AA 5B6BA 4E01A 3C3LA 3U33A 2RFQA 1LVCA 2Q8HA 5K3IA 4KCFA 1PK0A 3VADA 3MPIA 1RJ4A 1Y8PA 4N5FA 2BU2A 2Z1QA 4MP2A 3VKHA 2JBTA 2FP2A 1S26A 1K8TA 3CRLA 1X90A 5GJVE 2XQRB 4M9AA 2VR0A 1JQIA 2OJQA 4XVXA 2DDHA 5GJWE 4KS9A 1EGEA 4G5EA 3MDEA 3MPJA 3EOMA 4HKSA 3HWCA 3NF4A 3TTBA 2R0MA 2GBBA 4V25A 2OEVA 4AKHA 3GNCA 3VKGA 1RP3A 2YYMA 3F29A 2CJ7A 4X28C 3R7KA 1R2JA 3TZ5A 2CJ4A 4J1VA 3X0XA 1XFYA 2F6LA 3OWAA 1FS8A 4LQSB 3RKHA 1RJ1A 3LGQA 2VIGA 2OT4A 4L38A 2BU7A 3EONA 4MPCA 3FCJA 5K3HA 2AZEA 2RDZA 2YGWA 4LQQB 3MMOA 3BNHA 3UBRA 4FF2A 3MKHA 3X29A 2PO4A 2OEXA 4MPNA 5BRMA 3SWOA 4U83A 1FS9A 5BRKA 3TZ0A 1FS7A 1EGCA 3TZ2A 5M4NA 4X28A 5M4KA 2Q8GA 2EBHX 3SF6A 1XG2B 1U8VA 3AFFA 3Q22A 2FONA 4AI6A 2EC5A 4L1FA 4H7QA 3SXQA 2ZAFA 3TORA 3DJLA 1XFWA 5EZ3A 1XFZA 2WBIA 4P79A 1GKZA 2BU5A 2EBFX 1SIQA 1K93A 1Y8NA 1X91A 4Q5BA 3D2RA 2PG0A 1XFXA 3L1TA 4H85A 3FO3A 4MP7A 4Q4UA 2E81A 3S7WA 4DOYA 4Q0TA 2XS8A 4P13A 1IS2A 3II9A 4FZ4A 1RX0A 4F0XA 5B5WA 3TZ4A
chains in the Genus database with same CATH topology
4RM7A 3D1IA 1T9GA 3D9EA 4HR3A 4NXLA 2JIFA 3BNFA 1GU6A 2RF7A 2ZO5A 4JEKA 3M9VA 4WJYA 3B96A 3GM6A 2REHA 2DVLA 4Q5CA 3GQTA 3UU9A 4W9UA 2C12A 3MDDA 4KTOA 2D29A 2YYGA 1OAHA 3AFEA 3D9FA 3OIBA 3LG1A 4ZYJA 3SCEA 3PFDA 1W07A 2C0UA 1BUCA 4O5MA 4Q17A 3X0YA 3MXLA 2E80A 2CX9A 1UDYA 2UXWA 2YYLA 2EBAA 3P4TA 3D6BA 2A1TA 3BNJA 5K3GA 4OO2A 2IX6A 1UKWA 4L3YA 1EGDA 2J7AA 4L3ZA 3BNGA 4L3XA 2YYIA 3OWMA 4Q1OA 3D9GA 2YYKA 2IX5A 2YYJA 2JBRA 2JBSA 1SIRA 4ZXVA 2R0NA 3D9DA 5K3JA 1WS9A 2OR0A 4IRNA 4IV6A 1QDBA 1IVHA 2RFQA 5K3IA 4KCFA 3MPIA 4N5FA 2Z1QA 2JBTA 4M9AA 2VR0A 1JQIA 4XVXA 2DDHA 1EGEA 4G5EA 3MDEA 3MPJA 3EOMA 3HWCA 3NF4A 3TTBA 2R0MA 3GNCA 3F29A 2YYMA 4X28C 3R7KA 1R2JA 3X0XA 3OWAA 1FS8A 3RKHA 3LGQA 2VIGA 2OT4A 4L38A 3EONA 3FCJA 5K3HA 2RDZA 3MMOA 3BNHA 3UBRA 3MKHA 3SWOA 4U83A 1FS9A 1FS7A 1EGCA 4X28A 3SF6A 1U8VA 3AFFA 2FONA 4L1FA 3SXQA 2ZAFA 3TORA 2WBIA 1SIQA 4Q5BA 2PG0A 3L1TA 3FO3A 4Q4UA 2E81A 3S7WA 4DOYA 4Q0TA 4P13A 1IS2A 3II9A 1RX0A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4RM7 A;  3D1I A;  1T9G A;  3D9E A;  4HR3 A;  4NXL A;  2JIF A;  3BNF A;  1GU6 A;  2RF7 A;  2ZO5 A;  4JEK A;  3M9V A;  4WJY A;  3B96 A;  3GM6 A;  2REH A;  2DVL A;  4Q5C A;  3GQT A;  3UU9 A;  4W9U A;  2C12 A;  3MDD A;  4KTO A;  2D29 A;  2YYG A;  1OAH A;  3AFE A;  3D9F A;  3OIB A;  3LG1 A;  4ZYJ A;  3SCE A;  3PFD A;  1W07 A;  2C0U A;  1BUC A;  4O5M A;  4Q17 A;  3X0Y A;  3MXL A;  2E80 A;  2CX9 A;  1UDY A;  2UXW A;  2YYL A;  2EBA A;  3P4T A;  3D6B A;  2A1T A;  3BNJ A;  5K3G A;  4OO2 A;  2IX6 A;  1UKW A;  4L3Y A;  1EGD A;  2J7A A;  4L3Z A;  3BNG A;  4L3X A;  2YYI A;  3OWM A;  4Q1O A;  3D9G A;  2YYK A;  2IX5 A;  2YYJ A;  2JBR A;  2JBS A;  1SIR A;  4ZXV A;  2R0N A;  3D9D A;  5K3J A;  1WS9 A;  2OR0 A;  4IRN A;  4IV6 A;  1QDB A;  1IVH A;  2RFQ A;  5K3I A;  4KCF A;  3MPI A;  4N5F A;  2Z1Q A;  2JBT A;  4M9A A;  2VR0 A;  1JQI A;  4XVX A;  2DDH A;  1EGE A;  4G5E A;  3MDE A;  3MPJ A;  3EOM A;  3HWC A;  3NF4 A;  3TTB A;  2R0M A;  3GNC A;  3F29 A;  2YYM A;  4X28 C;  3R7K A;  1R2J A;  3X0X A;  3OWA A;  1FS8 A;  3RKH A;  3LGQ A;  2VIG A;  2OT4 A;  4L38 A;  3EON A;  3FCJ A;  5K3H A;  2RDZ A;  3MMO A;  3BNH A;  3UBR A;  3MKH A;  3SWO A;  4U83 A;  1FS9 A;  1FS7 A;  1EGC A;  4X28 A;  3SF6 A;  1U8V A;  3AFF A;  2FON A;  4L1F A;  3SXQ A;  2ZAF A;  3TOR A;  2WBI A;  1SIQ A;  4Q5B A;  2PG0 A;  3L1T A;  3FO3 A;  4Q4U A;  2E81 A;  3S7W A;  4DOY A;  4Q0T A;  4P13 A;  1IS2 A;  3II9 A;  1RX0 A; 
#chains in the Genus database with same CATH topology
 4RM7 A;  3CE2 A;  3C2P A;  1SC5 A;  4JIO A;  1XFU A;  2CJ6 A;  3Q23 A;  3D1I A;  1T9G A;  3D9E A;  4HR3 A;  4NXL A;  2JIF A;  3BNF A;  2QR4 A;  1GU6 A;  4G97 A;  2CJ5 A;  2Q8F A;  2RF7 A;  2BU8 A;  2LFW A;  2ZO5 A;  3N0R A;  3C46 A;  5J6A A;  4JEK A;  3M9V A;  4WJY A;  3Q0A A;  4KSF A;  3B96 A;  2R05 A;  3GM6 A;  4HKR A;  2REH A;  2DVL A;  4Q5C A;  3GQT A;  3UU9 A;  4FF4 A;  5B5V A;  4W9U A;  4JIZ A;  2C12 A;  4DZY A;  3MDD A;  4KTO A;  2HJN A;  1XFV A;  2D29 A;  1GJV A;  2ZKJ A;  2AO2 A;  1JM6 A;  1OAH A;  3AFE A;  2YYG A;  3D9F A;  3OIB A;  2VF1 A;  4QIC A;  5M4M A;  3LG1 A;  4ZYJ A;  2FP1 A;  3SCE A;  1PI1 A;  3PFD A;  2R02 A;  1W07 A;  2C0U A;  1BUC A;  4O5M A;  4Q17 A;  3X0Y A;  3MXL A;  4E00 A;  2E80 A;  4KSA A;  2CX9 A;  1UDY A;  4H81 A;  2BU6 A;  2CJ8 A;  2UXW A;  2YYL A;  4E02 A;  2EBA A;  2PNR A;  3P4T A;  1SK6 A;  3CRK A;  3D6B A;  2A1T A;  2ZDY A;  3BNJ A;  2ZDX A;  5K3G A;  4OO2 A;  2IX6 A;  1UKW A;  1K90 A;  4L3Y A;  1EGD A;  2J7A A;  5J71 A;  3Q24 A;  4MPE A;  4FF1 A;  4L3Z A;  3BNG A;  2R03 A;  2Q8I A;  1R3B A;  1GKX A;  3KML A;  4FF3 A;  1Y8O A;  4L3X A;  2YYI A;  3OWM A;  4Q1O A;  3D9G A;  2YYK A;  2IX5 A;  2XS1 A;  2YYJ A;  2JBR A;  2JBS A;  1SIR A;  4ZXV A;  4AKI A;  2R0N A;  5M4P A;  4AKG A;  3D9D A;  5K3J A;  4V26 A;  1WS9 A;  2OR0 A;  4IRN A;  4IV6 A;  1QDB A;  1X8Z A;  1IVH A;  1Y0V A;  2BTZ A;  2E0A A;  5B6B A;  4E01 A;  3C3L A;  3U33 A;  2RFQ A;  1LVC A;  2Q8H A;  5K3I A;  4KCF A;  1PK0 A;  3VAD A;  3MPI A;  1RJ4 A;  1Y8P A;  4N5F A;  2BU2 A;  2Z1Q A;  4MP2 A;  3VKH A;  2JBT A;  2FP2 A;  1S26 A;  1K8T A;  3CRL A;  1X90 A;  5GJV E;  2XQR B;  4M9A A;  2VR0 A;  1JQI A;  2OJQ A;  4XVX A;  2DDH A;  5GJW E;  4KS9 A;  1EGE A;  4G5E A;  3MDE A;  3MPJ A;  3EOM A;  4HKS A;  3HWC A;  3NF4 A;  3TTB A;  2R0M A;  2GBB A;  4V25 A;  2OEV A;  4AKH A;  3GNC A;  3VKG A;  1RP3 A;  2YYM A;  3F29 A;  2CJ7 A;  4X28 C;  3R7K A;  1R2J A;  3TZ5 A;  2CJ4 A;  4J1V A;  3X0X A;  1XFY A;  2F6L A;  3OWA A;  1FS8 A;  4LQS B;  3RKH A;  1RJ1 A;  3LGQ A;  2VIG A;  2OT4 A;  4L38 A;  2BU7 A;  3EON A;  4MPC A;  3FCJ A;  5K3H A;  2AZE A;  2RDZ A;  2YGW A;  4LQQ B;  3MMO A;  3BNH A;  3UBR A;  4FF2 A;  3MKH A;  3X29 A;  2PO4 A;  2OEX A;  4MPN A;  5BRM A;  3SWO A;  4U83 A;  1FS9 A;  5BRK A;  3TZ0 A;  1FS7 A;  1EGC A;  3TZ2 A;  5M4N A;  4X28 A;  5M4K A;  2Q8G A;  2EBH X;  3SF6 A;  1XG2 B;  1U8V A;  3AFF A;  3Q22 A;  2FON A;  4AI6 A;  2EC5 A;  4L1F A;  4H7Q A;  3SXQ A;  2ZAF A;  3TOR A;  3DJL A;  1XFW A;  5EZ3 A;  1XFZ A;  2WBI A;  4P79 A;  1GKZ A;  2BU5 A;  2EBF X;  1SIQ A;  1K93 A;  1Y8N A;  1X91 A;  4Q5B A;  3D2R A;  2PG0 A;  1XFX A;  3L1T A;  4H85 A;  3FO3 A;  4MP7 A;  4Q4U A;  2E81 A;  3S7W A;  4DOY A;  4Q0T A;  2XS8 A;  4P13 A;  1IS2 A;  3II9 A;  4FZ4 A;  1RX0 A;  4F0X A;  5B5W A;  3TZ4 A; 
#chains in the Genus database with same CATH homology
 4RM7 A;  3D1I A;  1T9G A;  3D9E A;  4HR3 A;  4NXL A;  2JIF A;  3BNF A;  1GU6 A;  2RF7 A;  2ZO5 A;  4JEK A;  3M9V A;  4WJY A;  3B96 A;  3GM6 A;  2REH A;  2DVL A;  4Q5C A;  3GQT A;  3UU9 A;  4W9U A;  2C12 A;  3MDD A;  4KTO A;  2D29 A;  2YYG A;  1OAH A;  3AFE A;  3D9F A;  3OIB A;  3LG1 A;  4ZYJ A;  3SCE A;  3PFD A;  1W07 A;  2C0U A;  1BUC A;  4O5M A;  4Q17 A;  3X0Y A;  3MXL A;  2E80 A;  2CX9 A;  1UDY A;  2UXW A;  2YYL A;  2EBA A;  3P4T A;  3D6B A;  2A1T A;  3BNJ A;  5K3G A;  4OO2 A;  2IX6 A;  1UKW A;  4L3Y A;  1EGD A;  2J7A A;  4L3Z A;  3BNG A;  4L3X A;  2YYI A;  3OWM A;  4Q1O A;  3D9G A;  2YYK A;  2IX5 A;  2YYJ A;  2JBR A;  2JBS A;  1SIR A;  4ZXV A;  2R0N A;  3D9D A;  5K3J A;  1WS9 A;  2OR0 A;  4IRN A;  4IV6 A;  1QDB A;  1IVH A;  2RFQ A;  5K3I A;  4KCF A;  3MPI A;  4N5F A;  2Z1Q A;  2JBT A;  4M9A A;  2VR0 A;  1JQI A;  4XVX A;  2DDH A;  1EGE A;  4G5E A;  3MDE A;  3MPJ A;  3EOM A;  3HWC A;  3NF4 A;  3TTB A;  2R0M A;  3GNC A;  3F29 A;  2YYM A;  4X28 C;  3R7K A;  1R2J A;  3X0X A;  3OWA A;  1FS8 A;  3RKH A;  3LGQ A;  2VIG A;  2OT4 A;  4L38 A;  3EON A;  3FCJ A;  5K3H A;  2RDZ A;  3MMO A;  3BNH A;  3UBR A;  3MKH A;  3SWO A;  4U83 A;  1FS9 A;  1FS7 A;  1EGC A;  4X28 A;  3SF6 A;  1U8V A;  3AFF A;  2FON A;  4L1F A;  3SXQ A;  2ZAF A;  3TOR A;  2WBI A;  1SIQ A;  4Q5B A;  2PG0 A;  3L1T A;  3FO3 A;  4Q4U A;  2E81 A;  3S7W A;  4DOY A;  4Q0T A;  4P13 A;  1IS2 A;  3II9 A;  1RX0 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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