3M9VA

X-ray structure of a kijd3 in complex with dtdp
Total Genus 144
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
144
sequence length
394
structure length
390
Chain Sequence
STTGLYAPVTPAGRVLLDRLAAHLPRIRSTAAEHDRDGTFPTDTFDALRKDGLMGATVPAELGGLGVDRLYDVAVALLAVARADASTALALHMQLSRGLTLGYEWRHGDERARTLAERILRGMVAGDAVVCSGIKDHHTAVTTLRPDGAGGWLLSGRKTLVSMAPVGTHFVINARTDGGPPRLASPVVTRDTPGFTVLDNWDGLGMRASGTVDIVFDDCPIPADHVLMRDPARNDAVLAGQTVSSVSVLGVYVGVAQAAYDTAVAALERRPEPPQAAALTLVAEIDSRLYALRATAGSALTAADALSADLSGDMDERGRQMMRHFQCAKLAVNRLAPEIVSDCLSLVGGASYTAGHPLARLLRDVQAGRFMQPYAYVDAVDFLSAQALGI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords FAD-dependent oxidoreductase
publication title X-ray structure of kijd3, a key enzyme involved in the biosynthesis of D-kijanose.
pubmed doi rcsb
source organism Actinomadura kijaniata
molecule tags Oxidoreductase
total genus 144
structure length 390
sequence length 394
ec nomenclature
pdb deposition date 2010-03-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00441 Acyl-CoA_dh_1 Acyl-CoA dehydrogenase, C-terminal domain
A PF02770 Acyl-CoA_dh_M Acyl-CoA dehydrogenase, middle domain
A PF02771 Acyl-CoA_dh_N Acyl-CoA dehydrogenase, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.540.10 Mainly Alpha Orthogonal Bundle Butyryl-Coa Dehydrogenase, subunit A; domain 1 Acyl-CoA dehydrogenase/oxidase, N-terminal domain 3m9vA01
1.20.140.10 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A; domain 3 Butyryl-CoA Dehydrogenase, subunit A, domain 3 3m9vA03
2.40.110.10 Mainly Beta Beta Barrel Butyryl-CoA Dehydrogenase, subunit A; domain 2 Butyryl-CoA Dehydrogenase, subunit A, domain 2 3m9vA02
3MPJA 3TTBA 1GU6A 5K3HA 3GQTA 4L3XA 1FS7A 4ZXVA 3L1TA 1EGDA 1OAHA 4L38A 4Q0TA 3D9EA 3OWAA 2Z1QA 4O5MA 4P13A 3BNJA 4JEKA 1UKWA 2YYKA 3P4TA 2JBTA 3BNGA 1FS9A 2VIGA 3NF4A 3UU9A 4KTOA 4N5FA 2YYIA 3OIBA 3SF6A 1W07A 3II9A 2FONA 4DOYA 3LG1A 2OR0A 1EGCA 2IX5A 4HR3A 4KCFA 2YYJA 1T9GA 4WJYA 2C12A 3D9FA 3GNCA 2RDZA 2YYLA 3AFFA 3F29A 3BNHA 1QDBA 2R0MA 4M9AA 4U83A 3TORA 2J7AA 2JBRA 4ZYJA 4L3ZA 2VR0A 4X28C 3MDEA 3HWCA 2UXWA 4Q1OA 3SXQA 3D9GA 4Q4UA 4Q17A 2ZO5A 4XVXA 5K3IA 3SWOA 1SIRA 4W9UA 3S7WA 3SCEA 2RF7A 2JBSA 2YYGA 3FCJA 3X0XA 4G5EA 2E80A 1IS2A 2E81A 5K3JA 1WS9A 3MDDA 2RFQA 1EGEA 3MPIA 3X0YA 3R7KA 3D9DA 2R0NA 1SIQA 3EOMA 4X28A 4L3YA 4OO2A 2PG0A 3MKHA 4IRNA 3EONA 4L1FA 4Q5CA 2DVLA 3MXLA 2JIFA 5K3GA 3GM6A 3RKHA 2CX9A 4NXLA 1JQIA 2EBAA 2ZAFA 1U8VA 4Q5BA 3B96A 3FO3A 2D29A 1IVHA 2C0UA 3PFDA 1R2JA 3D6BA 1FS8A 1RX0A 3BNFA 3D1IA 3LGQA 2OT4A 2WBIA 3UBRA 4RM7A 2REHA 3M9VA 2YYMA 2DDHA 3MMOA 1BUCA 2A1TA 1UDYA 3OWMA 4IV6A 3AFEA 2IX6A
chains in the Genus database with same CATH superfamily
2PNRA 5J71A 3MPJA 3TTBA 1GU6A 5K3HA 2FP2A 1XFZA 4G97A 2Q8HA 4MPNA 2XS8A 1XG2B 5M4PA 5EZ3A 3GQTA 3VADA 1XFVA 1SC5A 4L3XA 1FS7A 4ZXVA 2HJNA 3L1TA 1EGDA 1OAHA 4L38A 4Q0TA 3D9EA 1XFYA 3OWAA 4J1VA 2Z1QA 4O5MA 4P13A 1X8ZA 2PO4A 3BNJA 4JEKA 2F6LA 1UKWA 2YYKA 1Y0VA 5B5VA 3P4TA 2JBTA 1LVCA 2R03A 4MPEA 3BNGA 2BTZA 5M4KA 1FS9A 4E02A 2VIGA 3Q23A 3NF4A 2CJ6A 4LQSB 3UU9A 5B5WA 1GKZA 4KTOA 2XQRB 2ZDYA 4N5FA 4MP7A 2YYIA 3OIBA 5M4NA 3SF6A 1W07A 3II9A 2FONA 4DOYA 4F0XA 3LG1A 1XFUA 2CJ8A 2EBFX 1PK0A 2OR0A 1EGCA 5BRMA 3Q0AA 2IX5A 4HKRA 4KSFA 4HR3A 4KCFA 2YYJA 4KS9A 1T9GA 4WJYA 5GJWE 1K93A 2C12A 3D9FA 3GNCA 2RDZA 2YYLA 4JIZA 4FF1A 3AFFA 2BU2A 2E0AA 3F29A 4P79A 3VKGA 3BNHA 3TZ2A 1QDBA 2R0MA 4M9AA 4U83A 1R3BA 3TORA 4AKGA 2J7AA 2JBRA 4ZYJA 4L3ZA 3C2PA 2VR0A 4X28C 3MDEA 2AZEA 2CJ7A 3HWCA 3Q24A 2UXWA 1K8TA 2BU7A 4Q1OA 2BU8A 3SXQA 5BRKA 3D9GA 5B6BA 2CJ5A 4FF2A 4MPCA 4Q4UA 3C46A 3DJLA 4Q17A 2ZO5A 4HKSA 4XVXA 5K3IA 3SWOA 1SIRA 4W9UA 2OEXA 3KMLA 3S7WA 1XFXA 2BU6A 2RF7A 2JBSA 2YYGA 3FCJA 1SK6A 3X0XA 3SCEA 4G5EA 2E80A 1IS2A 2E81A 2XS1A 5K3JA 1WS9A 3MDDA 4QICA 2RFQA 4FZ4A 1EGEA 3MPIA 2EC5A 2R05A 3X0YA 2ZKJA 4AI6A 3R7KA 3D9DA 2Q8IA 4E01A 2R0NA 2LFWA 4AKHA 1Y8NA 5GJVE 1SIQA 3EOMA 4X28A 4L3YA 4OO2A 3N0RA 4V25A 4V26A 4FF4A 2YGWA 2PG0A 3MKHA 4IRNA 3EONA 3CRLA 4DZYA 4L1FA 3VKHA 4Q5CA 1RJ1A 2DVLA 3MXLA 2BU5A 2JIFA 5K3GA 3GM6A 3RKHA 4FF3A 1RP3A 3X29A 2CX9A 1Y8PA 2OJQA 4AKIA 1RJ4A 1Y8OA 4LQQB 4NXLA 2QR4A 1JQIA 2ZDXA 2EBAA 2ZAFA 1U8VA 4Q5BA 4H85A 3B96A 2GBBA 3U33A 1GJVA 2AO2A 3FO3A 2D29A 1S26A 3TZ4A 2OEVA 1IVHA 2C0UA 3PFDA 3TZ5A 1R2JA 3D6BA 1FS8A 1RX0A 3BNFA 1PI1A 4JIOA 4MP2A 1JM6A 3C3LA 4H81A 3D1IA 1K90A 4KSAA 3LGQA 2OT4A 2Q8FA 2WBIA 1GKXA 3CE2A 3UBRA 3Q22A 2CJ4A 4RM7A 2REHA 3M9VA 1XFWA 3TZ0A 1X90A 2YYMA 2EBHX 2DDHA 3CRKA 2R02A 4E00A 1X91A 5J6AA 2Q8GA 3D2RA 1BUCA 3MMOA 2A1TA 2FP1A 5M4MA 2VF1A 1UDYA 3OWMA 4H7QA 4IV6A 3AFEA 2IX6A
chains in the Genus database with same CATH topology
3MPJA 3TTBA 1GU6A 5K3HA 3GQTA 4L3XA 1FS7A 4ZXVA 3L1TA 1EGDA 1OAHA 4L38A 4Q0TA 3D9EA 3OWAA 2Z1QA 4O5MA 4P13A 3BNJA 4JEKA 1UKWA 2YYKA 3P4TA 2JBTA 3BNGA 1FS9A 2VIGA 3NF4A 3UU9A 4KTOA 4N5FA 2YYIA 3OIBA 3SF6A 1W07A 3II9A 2FONA 4DOYA 3LG1A 2OR0A 1EGCA 2IX5A 4HR3A 4KCFA 2YYJA 1T9GA 4WJYA 2C12A 3D9FA 3GNCA 2RDZA 2YYLA 3AFFA 3F29A 3BNHA 1QDBA 2R0MA 4M9AA 4U83A 3TORA 2J7AA 2JBRA 4ZYJA 4L3ZA 2VR0A 4X28C 3MDEA 3HWCA 2UXWA 4Q1OA 3SXQA 3D9GA 4Q4UA 4Q17A 2ZO5A 4XVXA 5K3IA 3SWOA 1SIRA 4W9UA 3S7WA 3SCEA 2RF7A 2JBSA 2YYGA 3FCJA 3X0XA 4G5EA 2E80A 1IS2A 2E81A 5K3JA 1WS9A 3MDDA 2RFQA 1EGEA 3MPIA 3X0YA 3R7KA 3D9DA 2R0NA 1SIQA 3EOMA 4X28A 4L3YA 4OO2A 2PG0A 3MKHA 4IRNA 3EONA 4L1FA 4Q5CA 2DVLA 3MXLA 2JIFA 5K3GA 3GM6A 3RKHA 2CX9A 4NXLA 1JQIA 2EBAA 2ZAFA 1U8VA 4Q5BA 3B96A 3FO3A 2D29A 1IVHA 2C0UA 3PFDA 1R2JA 3D6BA 1FS8A 1RX0A 3BNFA 3D1IA 3LGQA 2OT4A 2WBIA 3UBRA 4RM7A 2REHA 3M9VA 2YYMA 2DDHA 3MMOA 1BUCA 2A1TA 1UDYA 3OWMA 4IV6A 3AFEA 2IX6A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3MPJ A;  3TTB A;  1GU6 A;  5K3H A;  3GQT A;  4L3X A;  1FS7 A;  4ZXV A;  3L1T A;  1EGD A;  1OAH A;  4L38 A;  4Q0T A;  3D9E A;  3OWA A;  2Z1Q A;  4O5M A;  4P13 A;  3BNJ A;  4JEK A;  1UKW A;  2YYK A;  3P4T A;  2JBT A;  3BNG A;  1FS9 A;  2VIG A;  3NF4 A;  3UU9 A;  4KTO A;  4N5F A;  2YYI A;  3OIB A;  3SF6 A;  1W07 A;  3II9 A;  2FON A;  4DOY A;  3LG1 A;  2OR0 A;  1EGC A;  2IX5 A;  4HR3 A;  4KCF A;  2YYJ A;  1T9G A;  4WJY A;  2C12 A;  3D9F A;  3GNC A;  2RDZ A;  2YYL A;  3AFF A;  3F29 A;  3BNH A;  1QDB A;  2R0M A;  4M9A A;  4U83 A;  3TOR A;  2J7A A;  2JBR A;  4ZYJ A;  4L3Z A;  2VR0 A;  4X28 C;  3MDE A;  3HWC A;  2UXW A;  4Q1O A;  3SXQ A;  3D9G A;  4Q4U A;  4Q17 A;  2ZO5 A;  4XVX A;  5K3I A;  3SWO A;  1SIR A;  4W9U A;  3S7W A;  3SCE A;  2RF7 A;  2JBS A;  2YYG A;  3FCJ A;  3X0X A;  4G5E A;  2E80 A;  1IS2 A;  2E81 A;  5K3J A;  1WS9 A;  3MDD A;  2RFQ A;  1EGE A;  3MPI A;  3X0Y A;  3R7K A;  3D9D A;  2R0N A;  1SIQ A;  3EOM A;  4X28 A;  4L3Y A;  4OO2 A;  2PG0 A;  3MKH A;  4IRN A;  3EON A;  4L1F A;  4Q5C A;  2DVL A;  3MXL A;  2JIF A;  5K3G A;  3GM6 A;  3RKH A;  2CX9 A;  4NXL A;  1JQI A;  2EBA A;  2ZAF A;  1U8V A;  4Q5B A;  3B96 A;  3FO3 A;  2D29 A;  1IVH A;  2C0U A;  3PFD A;  1R2J A;  3D6B A;  1FS8 A;  1RX0 A;  3BNF A;  3D1I A;  3LGQ A;  2OT4 A;  2WBI A;  3UBR A;  4RM7 A;  2REH A;  3M9V A;  2YYM A;  2DDH A;  3MMO A;  1BUC A;  2A1T A;  1UDY A;  3OWM A;  4IV6 A;  3AFE A;  2IX6 A; 
#chains in the Genus database with same CATH topology
 2PNR A;  5J71 A;  3MPJ A;  3TTB A;  1GU6 A;  5K3H A;  2FP2 A;  1XFZ A;  4G97 A;  2Q8H A;  4MPN A;  2XS8 A;  1XG2 B;  5M4P A;  5EZ3 A;  3GQT A;  3VAD A;  1XFV A;  1SC5 A;  4L3X A;  1FS7 A;  4ZXV A;  2HJN A;  3L1T A;  1EGD A;  1OAH A;  4L38 A;  4Q0T A;  3D9E A;  1XFY A;  3OWA A;  4J1V A;  2Z1Q A;  4O5M A;  4P13 A;  1X8Z A;  2PO4 A;  3BNJ A;  4JEK A;  2F6L A;  1UKW A;  2YYK A;  1Y0V A;  5B5V A;  3P4T A;  2JBT A;  1LVC A;  2R03 A;  4MPE A;  3BNG A;  2BTZ A;  5M4K A;  1FS9 A;  4E02 A;  2VIG A;  3Q23 A;  3NF4 A;  2CJ6 A;  4LQS B;  3UU9 A;  5B5W A;  1GKZ A;  4KTO A;  2XQR B;  2ZDY A;  4N5F A;  4MP7 A;  2YYI A;  3OIB A;  5M4N A;  3SF6 A;  1W07 A;  3II9 A;  2FON A;  4DOY A;  4F0X A;  3LG1 A;  1XFU A;  2CJ8 A;  2EBF X;  1PK0 A;  2OR0 A;  1EGC A;  5BRM A;  3Q0A A;  2IX5 A;  4HKR A;  4KSF A;  4HR3 A;  4KCF A;  2YYJ A;  4KS9 A;  1T9G A;  4WJY A;  5GJW E;  1K93 A;  2C12 A;  3D9F A;  3GNC A;  2RDZ A;  2YYL A;  4JIZ A;  4FF1 A;  3AFF A;  2BU2 A;  2E0A A;  3F29 A;  4P79 A;  3VKG A;  3BNH A;  3TZ2 A;  1QDB A;  2R0M A;  4M9A A;  4U83 A;  1R3B A;  3TOR A;  4AKG A;  2J7A A;  2JBR A;  4ZYJ A;  4L3Z A;  3C2P A;  2VR0 A;  4X28 C;  3MDE A;  2AZE A;  2CJ7 A;  3HWC A;  3Q24 A;  2UXW A;  1K8T A;  2BU7 A;  4Q1O A;  2BU8 A;  3SXQ A;  5BRK A;  3D9G A;  5B6B A;  2CJ5 A;  4FF2 A;  4MPC A;  4Q4U A;  3C46 A;  3DJL A;  4Q17 A;  2ZO5 A;  4HKS A;  4XVX A;  5K3I A;  3SWO A;  1SIR A;  4W9U A;  2OEX A;  3KML A;  3S7W A;  1XFX A;  2BU6 A;  2RF7 A;  2JBS A;  2YYG A;  3FCJ A;  1SK6 A;  3X0X A;  3SCE A;  4G5E A;  2E80 A;  1IS2 A;  2E81 A;  2XS1 A;  5K3J A;  1WS9 A;  3MDD A;  4QIC A;  2RFQ A;  4FZ4 A;  1EGE A;  3MPI A;  2EC5 A;  2R05 A;  3X0Y A;  2ZKJ A;  4AI6 A;  3R7K A;  3D9D A;  2Q8I A;  4E01 A;  2R0N A;  2LFW A;  4AKH A;  1Y8N A;  5GJV E;  1SIQ A;  3EOM A;  4X28 A;  4L3Y A;  4OO2 A;  3N0R A;  4V25 A;  4V26 A;  4FF4 A;  2YGW A;  2PG0 A;  3MKH A;  4IRN A;  3EON A;  3CRL A;  4DZY A;  4L1F A;  3VKH A;  4Q5C A;  1RJ1 A;  2DVL A;  3MXL A;  2BU5 A;  2JIF A;  5K3G A;  3GM6 A;  3RKH A;  4FF3 A;  1RP3 A;  3X29 A;  2CX9 A;  1Y8P A;  2OJQ A;  4AKI A;  1RJ4 A;  1Y8O A;  4LQQ B;  4NXL A;  2QR4 A;  1JQI A;  2ZDX A;  2EBA A;  2ZAF A;  1U8V A;  4Q5B A;  4H85 A;  3B96 A;  2GBB A;  3U33 A;  1GJV A;  2AO2 A;  3FO3 A;  2D29 A;  1S26 A;  3TZ4 A;  2OEV A;  1IVH A;  2C0U A;  3PFD A;  3TZ5 A;  1R2J A;  3D6B A;  1FS8 A;  1RX0 A;  3BNF A;  1PI1 A;  4JIO A;  4MP2 A;  1JM6 A;  3C3L A;  4H81 A;  3D1I A;  1K90 A;  4KSA A;  3LGQ A;  2OT4 A;  2Q8F A;  2WBI A;  1GKX A;  3CE2 A;  3UBR A;  3Q22 A;  2CJ4 A;  4RM7 A;  2REH A;  3M9V A;  1XFW A;  3TZ0 A;  1X90 A;  2YYM A;  2EBH X;  2DDH A;  3CRK A;  2R02 A;  4E00 A;  1X91 A;  5J6A A;  2Q8G A;  3D2R A;  1BUC A;  3MMO A;  2A1T A;  2FP1 A;  5M4M A;  2VF1 A;  1UDY A;  3OWM A;  4H7Q A;  4IV6 A;  3AFE A;  2IX6 A; 
#chains in the Genus database with same CATH homology
 3MPJ A;  3TTB A;  1GU6 A;  5K3H A;  3GQT A;  4L3X A;  1FS7 A;  4ZXV A;  3L1T A;  1EGD A;  1OAH A;  4L38 A;  4Q0T A;  3D9E A;  3OWA A;  2Z1Q A;  4O5M A;  4P13 A;  3BNJ A;  4JEK A;  1UKW A;  2YYK A;  3P4T A;  2JBT A;  3BNG A;  1FS9 A;  2VIG A;  3NF4 A;  3UU9 A;  4KTO A;  4N5F A;  2YYI A;  3OIB A;  3SF6 A;  1W07 A;  3II9 A;  2FON A;  4DOY A;  3LG1 A;  2OR0 A;  1EGC A;  2IX5 A;  4HR3 A;  4KCF A;  2YYJ A;  1T9G A;  4WJY A;  2C12 A;  3D9F A;  3GNC A;  2RDZ A;  2YYL A;  3AFF A;  3F29 A;  3BNH A;  1QDB A;  2R0M A;  4M9A A;  4U83 A;  3TOR A;  2J7A A;  2JBR A;  4ZYJ A;  4L3Z A;  2VR0 A;  4X28 C;  3MDE A;  3HWC A;  2UXW A;  4Q1O A;  3SXQ A;  3D9G A;  4Q4U A;  4Q17 A;  2ZO5 A;  4XVX A;  5K3I A;  3SWO A;  1SIR A;  4W9U A;  3S7W A;  3SCE A;  2RF7 A;  2JBS A;  2YYG A;  3FCJ A;  3X0X A;  4G5E A;  2E80 A;  1IS2 A;  2E81 A;  5K3J A;  1WS9 A;  3MDD A;  2RFQ A;  1EGE A;  3MPI A;  3X0Y A;  3R7K A;  3D9D A;  2R0N A;  1SIQ A;  3EOM A;  4X28 A;  4L3Y A;  4OO2 A;  2PG0 A;  3MKH A;  4IRN A;  3EON A;  4L1F A;  4Q5C A;  2DVL A;  3MXL A;  2JIF A;  5K3G A;  3GM6 A;  3RKH A;  2CX9 A;  4NXL A;  1JQI A;  2EBA A;  2ZAF A;  1U8V A;  4Q5B A;  3B96 A;  3FO3 A;  2D29 A;  1IVH A;  2C0U A;  3PFD A;  1R2J A;  3D6B A;  1FS8 A;  1RX0 A;  3BNF A;  3D1I A;  3LGQ A;  2OT4 A;  2WBI A;  3UBR A;  4RM7 A;  2REH A;  3M9V A;  2YYM A;  2DDH A;  3MMO A;  1BUC A;  2A1T A;  1UDY A;  3OWM A;  4IV6 A;  3AFE A;  2IX6 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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