3M9VA

X-ray structure of a kijd3 in complex with dtdp
Total Genus 144
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
144
sequence length
394
structure length
390
Chain Sequence
STTGLYAPVTPAGRVLLDRLAAHLPRIRSTAAEHDRDGTFPTDTFDALRKDGLMGATVPAELGGLGVDRLYDVAVALLAVARADASTALALHMQLSRGLTLGYEWRHGDERARTLAERILRGMVAGDAVVCSGIKDHHTAVTTLRPDGAGGWLLSGRKTLVSMAPVGTHFVINARTDGGPPRLASPVVTRDTPGFTVLDNWDGLGMRASGTVDIVFDDCPIPADHVLMRDPARNDAVLAGQTVSSVSVLGVYVGVAQAAYDTAVAALERRPEPPQAAALTLVAEIDSRLYALRATAGSALTAADALSADLSGDMDERGRQMMRHFQCAKLAVNRLAPEIVSDCLSLVGGASYTAGHPLARLLRDVQAGRFMQPYAYVDAVDFLSAQALGI
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title X-ray structure of kijd3, a key enzyme involved in the biosynthesis of D-kijanose.
pubmed doi rcsb
molecule tags Oxidoreductase
source organism Actinomadura kijaniata
molecule keywords FAD-dependent oxidoreductase
total genus 144
structure length 390
sequence length 394
ec nomenclature
pdb deposition date 2010-03-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00441 Acyl-CoA_dh_1 Acyl-CoA dehydrogenase, C-terminal domain
A PF02770 Acyl-CoA_dh_M Acyl-CoA dehydrogenase, middle domain
A PF02771 Acyl-CoA_dh_N Acyl-CoA dehydrogenase, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.540.10 Mainly Alpha Orthogonal Bundle Butyryl-Coa Dehydrogenase, subunit A; domain 1 Acyl-CoA dehydrogenase/oxidase, N-terminal domain 3m9vA01
1.20.140.10 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A; domain 3 Butyryl-CoA Dehydrogenase, subunit A, domain 3 3m9vA03
2.40.110.10 Mainly Beta Beta Barrel Butyryl-CoA Dehydrogenase, subunit A; domain 2 Butyryl-CoA Dehydrogenase, subunit A, domain 2 3m9vA02
1IS2A 3SWOA 2Z1QA 3GM6A 3SF6A 4Q1OA 3D9EA 3D6BA 3BNGA 2IX6A 3P4TA 4ZYJA 2C12A 2E80A 3S7WA 4JEKA 2D29A 3GQTA 2YYGA 3X0XA 1OAHA 4WJYA 3RKHA 4XVXA 3MXLA 4Q5BA 4KTOA 4M9AA 2YYKA 2YYIA 4L38A 2PG0A 3F29A 3MPIA 1WS9A 2EBAA 3GNCA 3D1IA 3HWCA 1EGCA 4G5EA 2IX5A 4X28A 1FS7A 2YYLA 3TTBA 3FCJA 4IRNA 1QDBA 3LGQA 4Q4UA 1SIRA 2UXWA 1UDYA 2WBIA 4HR3A 1T9GA 2JBSA 2JIFA 2VR0A 3BNJA 1IVHA 4U83A 2JBTA 1R2JA 2VIGA 5K3JA 2JBRA 1U8VA 3OIBA 4ZXVA 2DVLA 3UBRA 3D9DA 4N5FA 3AFFA 2YYMA 1RX0A 4X28C 4W9UA 4L3YA 3UU9A 5K3HA 3MKHA 3SCEA 1EGEA 4OO2A 3MMOA 1BUCA 2DDHA 2J7AA 4IV6A 3L1TA 2ZO5A 2OT4A 3OWMA 3M9VA 4RM7A 3BNHA 2R0NA 4KCFA 3D9GA 2ZAFA 1FS9A 3OWAA 1SIQA 3EOMA 4L3ZA 2E81A 2RF7A 3AFEA 4O5MA 3EONA 2REHA 4NXLA 2RDZA 3NF4A 3D9FA 3X0YA 2FONA 1W07A 4Q0TA 4Q5CA 4L1FA 4L3XA 2RFQA 2OR0A 3R7KA 5K3GA 2A1TA 3MPJA 3TORA 1EGDA 3SXQA 1FS8A 1JQIA 3FO3A 3LG1A 3MDEA 5K3IA 4P13A 4Q17A 4DOYA 2R0MA 3MDDA 2CX9A 1GU6A 2C0UA 3BNFA 3B96A 2YYJA 3II9A 1UKWA 3PFDA
chains in the Genus database with same CATH superfamily
1IS2A 3Q22A 1SC5A 4HKSA 3SWOA 1XFYA 2Z1QA 2QR4A 3SF6A 3GM6A 3D9EA 2R03A 3D6BA 4Q1OA 3BNGA 2IX6A 5M4PA 4FF1A 4MPCA 1R3BA 3P4TA 4ZYJA 2C12A 1PI1A 5M4NA 5M4KA 3VADA 2E80A 1PK0A 2FP2A 2PO4A 4KSFA 5B5VA 3S7WA 4JEKA 5B5WA 5EZ3A 2D29A 3GQTA 2YYGA 3X0XA 1OAHA 1SK6A 4MP7A 4WJYA 4E02A 3RKHA 5B6BA 2Q8IA 3KMLA 4XVXA 2BU7A 3MXLA 1X8ZA 3Q0AA 1XFXA 4Q5BA 1GJVA 4HKRA 2AO2A 4KTOA 4M9AA 5BRKA 2YYKA 1XFVA 2YYIA 4L38A 2PG0A 5BRMA 3F29A 4G97A 1Y8PA 2EBFX 1XFZA 3MPIA 2BU6A 1WS9A 2EBAA 3GNCA 4JIZA 1X90A 3D1IA 3HWCA 2Q8HA 3C46A 1RP3A 3TZ5A 1EGCA 2EC5A 2IX5A 4X28A 1FS7A 2YYLA 4G5EA 3TTBA 3FCJA 4IRNA 1QDBA 3LGQA 4Q4UA 5J6AA 2CJ7A 1SIRA 2UXWA 1UDYA 1X91A 2BU2A 5GJVE 4V25A 2WBIA 4HR3A 1T9GA 2JBSA 2JIFA 2VR0A 3BNJA 4FZ4A 4MP2A 3VKGA 4FF2A 1IVHA 4U83A 4P79A 2JBTA 1R2JA 2VIGA 5K3JA 2JBRA 1Y0VA 1U8VA 3OIBA 4H81A 4ZXVA 2DVLA 1Y8OA 1K93A 1LVCA 3UBRA 4FF4A 2ZDYA 1S26A 3D9DA 4N5FA 3AFFA 2OEVA 2YYMA 4AKHA 1RX0A 4X28C 4W9UA 3D2RA 4L3YA 3N0RA 2OEXA 2Q8GA 3UU9A 2YGWA 1XFWA 5J71A 5K3HA 4KSAA 3MKHA 2E0AA 4E01A 3SCEA 1EGEA 2FP1A 2XQRB 3TZ2A 4H85A 4OO2A 3MMOA 1BUCA 1K8TA 4H7QA 4LQSB 2DDHA 2J7AA 4IV6A 3L1TA 2ZO5A 3CRLA 3OWMA 3M9VA 4RM7A 1RJ4A 3BNHA 2OT4A 2R0NA 2AZEA 4JIOA 3C2PA 4KCFA 3D9GA 2ZAFA 2CJ8A 1FS9A 3OWAA 1SIQA 3EOMA 4L3ZA 2E81A 2RF7A 3TZ0A 3AFEA 4O5MA 3EONA 2CJ6A 2ZKJA 2REHA 4NXLA 5M4MA 1XFUA 4J1VA 2Q8FA 1GKZA 3X29A 2RDZA 3NF4A 2CJ5A 2VF1A 3D9FA 4E00A 2GBBA 3X0YA 2R02A 2FONA 2BU8A 1W07A 4Q0TA 4Q5CA 4L1FA 2BTZA 4L3XA 2RFQA 2OR0A 2OJQA 4LQQB 1XG2B 5GJWE 2CJ4A 4MPNA 3U33A 3C3LA 2F6LA 3R7KA 5K3GA 2A1TA 3MPJA 3TORA 4AKIA 1JM6A 1EGDA 4QICA 3SXQA 4AKGA 4MPEA 2R05A 1FS8A 1JQIA 3FO3A 3LG1A 3MDEA 3CE2A 5K3IA 4P13A 2LFWA 4V26A 2XS1A 1K90A 4DZYA 2ZDXA 3TZ4A 4F0XA 4Q17A 3Q24A 1RJ1A 4DOYA 2R0MA 3MDDA 2BU5A 2CX9A 2XS8A 1GU6A 2C0UA 1Y8NA 3Q23A 3BNFA 3B96A 2YYJA 2EBHX 4KS9A 4AI6A 3DJLA 2PNRA 1GKXA 3VKHA 2HJNA 3II9A 4FF3A 1UKWA 3CRKA 3PFDA
chains in the Genus database with same CATH topology
1IS2A 3SWOA 2Z1QA 3GM6A 3SF6A 4Q1OA 3D9EA 3D6BA 3BNGA 2IX6A 3P4TA 4ZYJA 2C12A 2E80A 3S7WA 4JEKA 2D29A 3GQTA 2YYGA 3X0XA 1OAHA 4WJYA 3RKHA 4XVXA 3MXLA 4Q5BA 4KTOA 4M9AA 2YYKA 2YYIA 4L38A 2PG0A 3F29A 3MPIA 1WS9A 2EBAA 3GNCA 3D1IA 3HWCA 1EGCA 4G5EA 2IX5A 4X28A 1FS7A 2YYLA 3TTBA 3FCJA 4IRNA 1QDBA 3LGQA 4Q4UA 1SIRA 2UXWA 1UDYA 2WBIA 4HR3A 1T9GA 2JBSA 2JIFA 2VR0A 3BNJA 1IVHA 4U83A 2JBTA 1R2JA 2VIGA 5K3JA 2JBRA 1U8VA 3OIBA 4ZXVA 2DVLA 3UBRA 3D9DA 4N5FA 3AFFA 2YYMA 1RX0A 4X28C 4W9UA 4L3YA 3UU9A 5K3HA 3MKHA 3SCEA 1EGEA 4OO2A 3MMOA 1BUCA 2DDHA 2J7AA 4IV6A 3L1TA 2ZO5A 2OT4A 3OWMA 3M9VA 4RM7A 3BNHA 2R0NA 4KCFA 3D9GA 2ZAFA 1FS9A 3OWAA 1SIQA 3EOMA 4L3ZA 2E81A 2RF7A 3AFEA 4O5MA 3EONA 2REHA 4NXLA 2RDZA 3NF4A 3D9FA 3X0YA 2FONA 1W07A 4Q0TA 4Q5CA 4L1FA 4L3XA 2RFQA 2OR0A 3R7KA 5K3GA 2A1TA 3MPJA 3TORA 1EGDA 3SXQA 1FS8A 1JQIA 3FO3A 3LG1A 3MDEA 5K3IA 4P13A 4Q17A 4DOYA 2R0MA 3MDDA 2CX9A 1GU6A 2C0UA 3BNFA 3B96A 2YYJA 3II9A 1UKWA 3PFDA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1IS2 A;  3SWO A;  2Z1Q A;  3GM6 A;  3SF6 A;  4Q1O A;  3D9E A;  3D6B A;  3BNG A;  2IX6 A;  3P4T A;  4ZYJ A;  2C12 A;  2E80 A;  3S7W A;  4JEK A;  2D29 A;  3GQT A;  2YYG A;  3X0X A;  1OAH A;  4WJY A;  3RKH A;  4XVX A;  3MXL A;  4Q5B A;  4KTO A;  4M9A A;  2YYK A;  2YYI A;  4L38 A;  2PG0 A;  3F29 A;  3MPI A;  1WS9 A;  2EBA A;  3GNC A;  3D1I A;  3HWC A;  1EGC A;  4G5E A;  2IX5 A;  4X28 A;  1FS7 A;  2YYL A;  3TTB A;  3FCJ A;  4IRN A;  1QDB A;  3LGQ A;  4Q4U A;  1SIR A;  2UXW A;  1UDY A;  2WBI A;  4HR3 A;  1T9G A;  2JBS A;  2JIF A;  2VR0 A;  3BNJ A;  1IVH A;  4U83 A;  2JBT A;  1R2J A;  2VIG A;  5K3J A;  2JBR A;  1U8V A;  3OIB A;  4ZXV A;  2DVL A;  3UBR A;  3D9D A;  4N5F A;  3AFF A;  2YYM A;  1RX0 A;  4X28 C;  4W9U A;  4L3Y A;  3UU9 A;  5K3H A;  3MKH A;  3SCE A;  1EGE A;  4OO2 A;  3MMO A;  1BUC A;  2DDH A;  2J7A A;  4IV6 A;  3L1T A;  2ZO5 A;  2OT4 A;  3OWM A;  3M9V A;  4RM7 A;  3BNH A;  2R0N A;  4KCF A;  3D9G A;  2ZAF A;  1FS9 A;  3OWA A;  1SIQ A;  3EOM A;  4L3Z A;  2E81 A;  2RF7 A;  3AFE A;  4O5M A;  3EON A;  2REH A;  4NXL A;  2RDZ A;  3NF4 A;  3D9F A;  3X0Y A;  2FON A;  1W07 A;  4Q0T A;  4Q5C A;  4L1F A;  4L3X A;  2RFQ A;  2OR0 A;  3R7K A;  5K3G A;  2A1T A;  3MPJ A;  3TOR A;  1EGD A;  3SXQ A;  1FS8 A;  1JQI A;  3FO3 A;  3LG1 A;  3MDE A;  5K3I A;  4P13 A;  4Q17 A;  4DOY A;  2R0M A;  3MDD A;  2CX9 A;  1GU6 A;  2C0U A;  3BNF A;  3B96 A;  2YYJ A;  3II9 A;  1UKW A;  3PFD A; 
#chains in the Genus database with same CATH topology
 1IS2 A;  3Q22 A;  1SC5 A;  4HKS A;  3SWO A;  1XFY A;  2Z1Q A;  2QR4 A;  3SF6 A;  3GM6 A;  3D9E A;  2R03 A;  3D6B A;  4Q1O A;  3BNG A;  2IX6 A;  5M4P A;  4FF1 A;  4MPC A;  1R3B A;  3P4T A;  4ZYJ A;  2C12 A;  1PI1 A;  5M4N A;  5M4K A;  3VAD A;  2E80 A;  1PK0 A;  2FP2 A;  2PO4 A;  4KSF A;  5B5V A;  3S7W A;  4JEK A;  5B5W A;  5EZ3 A;  2D29 A;  3GQT A;  2YYG A;  3X0X A;  1OAH A;  1SK6 A;  4MP7 A;  4WJY A;  4E02 A;  3RKH A;  5B6B A;  2Q8I A;  3KML A;  4XVX A;  2BU7 A;  3MXL A;  1X8Z A;  3Q0A A;  1XFX A;  4Q5B A;  1GJV A;  4HKR A;  2AO2 A;  4KTO A;  4M9A A;  5BRK A;  2YYK A;  1XFV A;  2YYI A;  4L38 A;  2PG0 A;  5BRM A;  3F29 A;  4G97 A;  1Y8P A;  2EBF X;  1XFZ A;  3MPI A;  2BU6 A;  1WS9 A;  2EBA A;  3GNC A;  4JIZ A;  1X90 A;  3D1I A;  3HWC A;  2Q8H A;  3C46 A;  1RP3 A;  3TZ5 A;  1EGC A;  2EC5 A;  2IX5 A;  4X28 A;  1FS7 A;  2YYL A;  4G5E A;  3TTB A;  3FCJ A;  4IRN A;  1QDB A;  3LGQ A;  4Q4U A;  5J6A A;  2CJ7 A;  1SIR A;  2UXW A;  1UDY A;  1X91 A;  2BU2 A;  5GJV E;  4V25 A;  2WBI A;  4HR3 A;  1T9G A;  2JBS A;  2JIF A;  2VR0 A;  3BNJ A;  4FZ4 A;  4MP2 A;  3VKG A;  4FF2 A;  1IVH A;  4U83 A;  4P79 A;  2JBT A;  1R2J A;  2VIG A;  5K3J A;  2JBR A;  1Y0V A;  1U8V A;  3OIB A;  4H81 A;  4ZXV A;  2DVL A;  1Y8O A;  1K93 A;  1LVC A;  3UBR A;  4FF4 A;  2ZDY A;  1S26 A;  3D9D A;  4N5F A;  3AFF A;  2OEV A;  2YYM A;  4AKH A;  1RX0 A;  4X28 C;  4W9U A;  3D2R A;  4L3Y A;  3N0R A;  2OEX A;  2Q8G A;  3UU9 A;  2YGW A;  1XFW A;  5J71 A;  5K3H A;  4KSA A;  3MKH A;  2E0A A;  4E01 A;  3SCE A;  1EGE A;  2FP1 A;  2XQR B;  3TZ2 A;  4H85 A;  4OO2 A;  3MMO A;  1BUC A;  1K8T A;  4H7Q A;  4LQS B;  2DDH A;  2J7A A;  4IV6 A;  3L1T A;  2ZO5 A;  3CRL A;  3OWM A;  3M9V A;  4RM7 A;  1RJ4 A;  3BNH A;  2OT4 A;  2R0N A;  2AZE A;  4JIO A;  3C2P A;  4KCF A;  3D9G A;  2ZAF A;  2CJ8 A;  1FS9 A;  3OWA A;  1SIQ A;  3EOM A;  4L3Z A;  2E81 A;  2RF7 A;  3TZ0 A;  3AFE A;  4O5M A;  3EON A;  2CJ6 A;  2ZKJ A;  2REH A;  4NXL A;  5M4M A;  1XFU A;  4J1V A;  2Q8F A;  1GKZ A;  3X29 A;  2RDZ A;  3NF4 A;  2CJ5 A;  2VF1 A;  3D9F A;  4E00 A;  2GBB A;  3X0Y A;  2R02 A;  2FON A;  2BU8 A;  1W07 A;  4Q0T A;  4Q5C A;  4L1F A;  2BTZ A;  4L3X A;  2RFQ A;  2OR0 A;  2OJQ A;  4LQQ B;  1XG2 B;  5GJW E;  2CJ4 A;  4MPN A;  3U33 A;  3C3L A;  2F6L A;  3R7K A;  5K3G A;  2A1T A;  3MPJ A;  3TOR A;  4AKI A;  1JM6 A;  1EGD A;  4QIC A;  3SXQ A;  4AKG A;  4MPE A;  2R05 A;  1FS8 A;  1JQI A;  3FO3 A;  3LG1 A;  3MDE A;  3CE2 A;  5K3I A;  4P13 A;  2LFW A;  4V26 A;  2XS1 A;  1K90 A;  4DZY A;  2ZDX A;  3TZ4 A;  4F0X A;  4Q17 A;  3Q24 A;  1RJ1 A;  4DOY A;  2R0M A;  3MDD A;  2BU5 A;  2CX9 A;  2XS8 A;  1GU6 A;  2C0U A;  1Y8N A;  3Q23 A;  3BNF A;  3B96 A;  2YYJ A;  2EBH X;  4KS9 A;  4AI6 A;  3DJL A;  2PNR A;  1GKX A;  3VKH A;  2HJN A;  3II9 A;  4FF3 A;  1UKW A;  3CRK A;  3PFD A; 
#chains in the Genus database with same CATH homology
 1IS2 A;  3SWO A;  2Z1Q A;  3GM6 A;  3SF6 A;  4Q1O A;  3D9E A;  3D6B A;  3BNG A;  2IX6 A;  3P4T A;  4ZYJ A;  2C12 A;  2E80 A;  3S7W A;  4JEK A;  2D29 A;  3GQT A;  2YYG A;  3X0X A;  1OAH A;  4WJY A;  3RKH A;  4XVX A;  3MXL A;  4Q5B A;  4KTO A;  4M9A A;  2YYK A;  2YYI A;  4L38 A;  2PG0 A;  3F29 A;  3MPI A;  1WS9 A;  2EBA A;  3GNC A;  3D1I A;  3HWC A;  1EGC A;  4G5E A;  2IX5 A;  4X28 A;  1FS7 A;  2YYL A;  3TTB A;  3FCJ A;  4IRN A;  1QDB A;  3LGQ A;  4Q4U A;  1SIR A;  2UXW A;  1UDY A;  2WBI A;  4HR3 A;  1T9G A;  2JBS A;  2JIF A;  2VR0 A;  3BNJ A;  1IVH A;  4U83 A;  2JBT A;  1R2J A;  2VIG A;  5K3J A;  2JBR A;  1U8V A;  3OIB A;  4ZXV A;  2DVL A;  3UBR A;  3D9D A;  4N5F A;  3AFF A;  2YYM A;  1RX0 A;  4X28 C;  4W9U A;  4L3Y A;  3UU9 A;  5K3H A;  3MKH A;  3SCE A;  1EGE A;  4OO2 A;  3MMO A;  1BUC A;  2DDH A;  2J7A A;  4IV6 A;  3L1T A;  2ZO5 A;  2OT4 A;  3OWM A;  3M9V A;  4RM7 A;  3BNH A;  2R0N A;  4KCF A;  3D9G A;  2ZAF A;  1FS9 A;  3OWA A;  1SIQ A;  3EOM A;  4L3Z A;  2E81 A;  2RF7 A;  3AFE A;  4O5M A;  3EON A;  2REH A;  4NXL A;  2RDZ A;  3NF4 A;  3D9F A;  3X0Y A;  2FON A;  1W07 A;  4Q0T A;  4Q5C A;  4L1F A;  4L3X A;  2RFQ A;  2OR0 A;  3R7K A;  5K3G A;  2A1T A;  3MPJ A;  3TOR A;  1EGD A;  3SXQ A;  1FS8 A;  1JQI A;  3FO3 A;  3LG1 A;  3MDE A;  5K3I A;  4P13 A;  4Q17 A;  4DOY A;  2R0M A;  3MDD A;  2CX9 A;  1GU6 A;  2C0U A;  3BNF A;  3B96 A;  2YYJ A;  3II9 A;  1UKW A;  3PFD A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...