4RM7A

The crystal structure of acyl-coa dehydrogenase from slackia heliotrinireducens dsm 20476
Total Genus 123
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
123
sequence length
386
structure length
375
Chain Sequence
NAMYDGLSRDEQRLLNHVREYGEKYFTPASISKWRKDQGLPDEVVKAFVDLDFNGFGVIHRRNHRTYDLFAQVLVIEELSRISGACLPFQNDLLQLQILEAFASSAQTSPFRTEYQDTGRLSYALAISEPEMRTHVTREGDTLVMNGTKMFVNNGEYAPALLVSAYDKTGDDPEFSFWMVPRSAAGIYAYPEQKIGQSMLPFATVRFDNVEVKESWRLKGSSKGFSQLYSLLEYGRVFTCAAALGEAQAAMEDAVAWARGREAQRIADLQQVQMKLTEMEVKLTNMRNLVYGAAREYDRGEHKRLSVALMKYYVPKAATEVASDAMQILGGRGYIQENRVSSIWQDCRGYQFADGTDEVMVVIAAPLILEQYKAS
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Acyl-CoA dehydrogenase
publication title The crystal structure of acyl-COA dehydrogenase from Slackia heliotrinireducens DSM 20476
rcsb
source organism Slackia heliotrinireducens
molecule tags Oxidoreductase
total genus 123
structure length 375
sequence length 386
ec nomenclature ec 1.3.8.1: Short-chain acyl-CoA dehydrogenase.
pdb deposition date 2014-10-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00441 Acyl-CoA_dh_1 Acyl-CoA dehydrogenase, C-terminal domain
A PF02770 Acyl-CoA_dh_M Acyl-CoA dehydrogenase, middle domain
A PF02771 Acyl-CoA_dh_N Acyl-CoA dehydrogenase, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.540.10 Mainly Alpha Orthogonal Bundle Butyryl-Coa Dehydrogenase, subunit A; domain 1 Acyl-CoA dehydrogenase/oxidase, N-terminal domain 4rm7A01
1.20.140.10 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A; domain 3 Butyryl-CoA Dehydrogenase, subunit A, domain 3 4rm7A03
2.40.110.10 Mainly Beta Beta Barrel Butyryl-CoA Dehydrogenase, subunit A; domain 2 Butyryl-CoA Dehydrogenase, subunit A, domain 2 4rm7A02
1EGEA 2IX5A 3II9A 3SWOA 1FS8A 2EBAA 2UXWA 4Q1OA 3NF4A 2YYJA 2DDHA 4RM7A 3AFFA 1SIRA 2JBRA 2REHA 2WBIA 4JEKA 3MDDA 4L3XA 4Q0TA 4Q4UA 2VIGA 1EGDA 2YYKA 2IX6A 2E81A 2D29A 3TORA 4NXLA 1EGCA 4ZYJA 3LGQA 4DOYA 2JIFA 2OR0A 3P4TA 3OWMA 1R2JA 2OT4A 2RDZA 2CX9A 4M9AA 2A1TA 1U8VA 4HR3A 2JBSA 3EOMA 3MDEA 3D6BA 3D9DA 3OWAA 3X0YA 3HWCA 4X28A 2YYGA 2PG0A 2VR0A 1WS9A 4KCFA 5K3IA 4L1FA 1OAHA 3LG1A 3UBRA 3GNCA 5K3HA 4WJYA 4KTOA 4X28C 3MPIA 3MMOA 2DVLA 3BNHA 4Q5CA 3D9EA 4Q5BA 3OIBA 2E80A 3TTBA 2RFQA 3MKHA 4OO2A 1FS9A 4L3YA 4P13A 2YYLA 2C0UA 4O5MA 2ZO5A 3F29A 4ZXVA 3FCJA 4L38A 3SCEA 2RF7A 4IRNA 1UKWA 2ZAFA 1FS7A 3S7WA 1RX0A 3D9FA 3BNFA 2YYIA 4N5FA 2C12A 1BUCA 2R0NA 4Q17A 4L3ZA 3SF6A 3D1IA 3GQTA 1IVHA 3BNGA 2JBTA 1W07A 3D9GA 2FONA 3PFDA 1T9GA 4G5EA 1QDBA 4W9UA 3RKHA 2R0MA 5K3JA 3AFEA 3EONA 4IV6A 1UDYA 3B96A 2J7AA 3GM6A 1GU6A 3SXQA 3M9VA 1JQIA 3MPJA 1SIQA 4U83A 2YYMA 3L1TA 3UU9A 3R7KA 3MXLA 2Z1QA 1IS2A 3X0XA 3FO3A 5K3GA 3BNJA 4XVXA
chains in the Genus database with same CATH superfamily
1EGEA 2IX5A 2CJ6A 2EC5A 2BU5A 2R05A 3II9A 1Y0VA 2PO4A 4E01A 3SWOA 1FS8A 2EBAA 2R02A 2UXWA 4Q1OA 5M4KA 2EBFX 3NF4A 2XQRB 2YYJA 2DDHA 4RM7A 3AFFA 1SIRA 2JBRA 2REHA 2WBIA 2HJNA 2EBHX 5B6BA 4JEKA 3MDDA 1K8TA 4L3XA 4Q4UA 4Q0TA 2VIGA 1EGDA 5J71A 4JIOA 3U33A 2YYKA 2IX6A 2E81A 2D29A 3TORA 4NXLA 4H85A 5BRKA 1EGCA 4ZYJA 2R03A 3LGQA 4HKRA 4DOYA 3VKHA 2JIFA 2OR0A 1R3BA 3P4TA 1XFVA 5EZ3A 3OWMA 1R2JA 2OT4A 1X8ZA 1X90A 2BU2A 2RDZA 2CX9A 4M9AA 2A1TA 1K90A 1U8VA 4FF3A 4HR3A 2JBSA 1PI1A 5GJVE 1XFWA 3EOMA 3MDEA 3D6BA 3D9DA 4E02A 4G97A 3OWAA 2BU7A 3X0YA 2Q8FA 3HWCA 4X28A 2PNRA 2YYGA 2PG0A 1S26A 2VR0A 3Q22A 3C2PA 1WS9A 3TZ0A 4KCFA 5K3IA 4L1FA 1OAHA 3LG1A 3Q23A 3UBRA 3GNCA 5K3HA 4WJYA 4KSAA 3C3LA 4KTOA 4X28C 3MPIA 1XFYA 1XFXA 3MMOA 2DVLA 3BNHA 4H7QA 4MP2A 4MPEA 4Q5CA 3DJLA 4LQSB 4FF1A 3D9EA 4MPNA 2LFWA 1GKZA 4Q5BA 3Q0AA 1RJ4A 2CJ8A 4FZ4A 2FP2A 2ZKJA 3OIBA 2XS8A 4MP7A 2OEVA 4E00A 2E80A 1XG2B 2RFQA 1RJ1A 3TTBA 3MKHA 4OO2A 3KMLA 1FS9A 2OEXA 4L3YA 3Q24A 4P13A 2YYLA 2ZDXA 2CJ5A 2C0UA 4O5MA 2QR4A 2BTZA 2ZDYA 2ZO5A 2Q8GA 3F29A 4J1VA 4FF4A 4ZXVA 1K93A 4LQQB 3FCJA 5M4MA 3TZ4A 4L38A 3SCEA 5J6AA 2VF1A 2RF7A 4IRNA 4QICA 2XS1A 1UKWA 4AI6A 1PK0A 2ZAFA 2CJ7A 2CJ4A 1FS7A 5B5VA 2E0AA 3S7WA 1RX0A 2AZEA 3D9FA 4HKSA 3VKGA 5BRMA 3BNFA 3N0RA 2YYIA 3CRKA 4N5FA 2C12A 1LVCA 1BUCA 2R0NA 4Q17A 1Y8NA 4JIZA 4L3ZA 2BU8A 3SF6A 3D1IA 4KS9A 4KSFA 1GJVA 4H81A 4P79A 4F0XA 4MPCA 3GQTA 5M4NA 4V26A 3VADA 1IVHA 3TZ2A 3BNGA 2F6LA 3CRLA 5B5WA 3C46A 2JBTA 1W07A 3D9GA 2FONA 3PFDA 1T9GA 4G5EA 1QDBA 4W9UA 3X29A 2GBBA 3RKHA 1Y8PA 3TZ5A 2AO2A 2R0MA 5K3JA 3AFEA 3CE2A 3EONA 4IV6A 1GKXA 2BU6A 1UDYA 3B96A 1XFZA 2J7AA 4AKGA 2Q8IA 1RP3A 1JM6A 3GM6A 1GU6A 3SXQA 3M9VA 1JQIA 3MPJA 1SIQA 4U83A 2FP1A 2YYMA 3L1TA 3UU9A 3R7KA 3MXLA 3D2RA 1X91A 2Z1QA 1IS2A 2YGWA 3X0XA 3FO3A 4V25A 5M4PA 2Q8HA 5K3GA 1SK6A 3BNJA 1XFUA 5GJWE 4AKIA 4AKHA 1Y8OA 4DZYA 2OJQA 1SC5A 4XVXA 4FF2A
chains in the Genus database with same CATH topology
1EGEA 2IX5A 3II9A 3SWOA 1FS8A 2EBAA 2UXWA 4Q1OA 3NF4A 2YYJA 2DDHA 4RM7A 3AFFA 1SIRA 2JBRA 2REHA 2WBIA 4JEKA 3MDDA 4L3XA 4Q0TA 4Q4UA 2VIGA 1EGDA 2YYKA 2IX6A 2E81A 2D29A 3TORA 4NXLA 1EGCA 4ZYJA 3LGQA 4DOYA 2JIFA 2OR0A 3P4TA 3OWMA 1R2JA 2OT4A 2RDZA 2CX9A 4M9AA 2A1TA 1U8VA 4HR3A 2JBSA 3EOMA 3MDEA 3D6BA 3D9DA 3OWAA 3X0YA 3HWCA 4X28A 2YYGA 2PG0A 2VR0A 1WS9A 4KCFA 5K3IA 4L1FA 1OAHA 3LG1A 3UBRA 3GNCA 5K3HA 4WJYA 4KTOA 4X28C 3MPIA 3MMOA 2DVLA 3BNHA 4Q5CA 3D9EA 4Q5BA 3OIBA 2E80A 3TTBA 2RFQA 3MKHA 4OO2A 1FS9A 4L3YA 4P13A 2YYLA 2C0UA 4O5MA 2ZO5A 3F29A 4ZXVA 3FCJA 4L38A 3SCEA 2RF7A 4IRNA 1UKWA 2ZAFA 1FS7A 3S7WA 1RX0A 3D9FA 3BNFA 2YYIA 4N5FA 2C12A 1BUCA 2R0NA 4Q17A 4L3ZA 3SF6A 3D1IA 3GQTA 1IVHA 3BNGA 2JBTA 1W07A 3D9GA 2FONA 3PFDA 1T9GA 4G5EA 1QDBA 4W9UA 3RKHA 2R0MA 5K3JA 3AFEA 3EONA 4IV6A 1UDYA 3B96A 2J7AA 3GM6A 1GU6A 3SXQA 3M9VA 1JQIA 3MPJA 1SIQA 4U83A 2YYMA 3L1TA 3UU9A 3R7KA 3MXLA 2Z1QA 1IS2A 3X0XA 3FO3A 5K3GA 3BNJA 4XVXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1EGE A;  2IX5 A;  3II9 A;  3SWO A;  1FS8 A;  2EBA A;  2UXW A;  4Q1O A;  3NF4 A;  2YYJ A;  2DDH A;  4RM7 A;  3AFF A;  1SIR A;  2JBR A;  2REH A;  2WBI A;  4JEK A;  3MDD A;  4L3X A;  4Q0T A;  4Q4U A;  2VIG A;  1EGD A;  2YYK A;  2IX6 A;  2E81 A;  2D29 A;  3TOR A;  4NXL A;  1EGC A;  4ZYJ A;  3LGQ A;  4DOY A;  2JIF A;  2OR0 A;  3P4T A;  3OWM A;  1R2J A;  2OT4 A;  2RDZ A;  2CX9 A;  4M9A A;  2A1T A;  1U8V A;  4HR3 A;  2JBS A;  3EOM A;  3MDE A;  3D6B A;  3D9D A;  3OWA A;  3X0Y A;  3HWC A;  4X28 A;  2YYG A;  2PG0 A;  2VR0 A;  1WS9 A;  4KCF A;  5K3I A;  4L1F A;  1OAH A;  3LG1 A;  3UBR A;  3GNC A;  5K3H A;  4WJY A;  4KTO A;  4X28 C;  3MPI A;  3MMO A;  2DVL A;  3BNH A;  4Q5C A;  3D9E A;  4Q5B A;  3OIB A;  2E80 A;  3TTB A;  2RFQ A;  3MKH A;  4OO2 A;  1FS9 A;  4L3Y A;  4P13 A;  2YYL A;  2C0U A;  4O5M A;  2ZO5 A;  3F29 A;  4ZXV A;  3FCJ A;  4L38 A;  3SCE A;  2RF7 A;  4IRN A;  1UKW A;  2ZAF A;  1FS7 A;  3S7W A;  1RX0 A;  3D9F A;  3BNF A;  2YYI A;  4N5F A;  2C12 A;  1BUC A;  2R0N A;  4Q17 A;  4L3Z A;  3SF6 A;  3D1I A;  3GQT A;  1IVH A;  3BNG A;  2JBT A;  1W07 A;  3D9G A;  2FON A;  3PFD A;  1T9G A;  4G5E A;  1QDB A;  4W9U A;  3RKH A;  2R0M A;  5K3J A;  3AFE A;  3EON A;  4IV6 A;  1UDY A;  3B96 A;  2J7A A;  3GM6 A;  1GU6 A;  3SXQ A;  3M9V A;  1JQI A;  3MPJ A;  1SIQ A;  4U83 A;  2YYM A;  3L1T A;  3UU9 A;  3R7K A;  3MXL A;  2Z1Q A;  1IS2 A;  3X0X A;  3FO3 A;  5K3G A;  3BNJ A;  4XVX A; 
#chains in the Genus database with same CATH topology
 1EGE A;  2IX5 A;  2CJ6 A;  2EC5 A;  2BU5 A;  2R05 A;  3II9 A;  1Y0V A;  2PO4 A;  4E01 A;  3SWO A;  1FS8 A;  2EBA A;  2R02 A;  2UXW A;  4Q1O A;  5M4K A;  2EBF X;  3NF4 A;  2XQR B;  2YYJ A;  2DDH A;  4RM7 A;  3AFF A;  1SIR A;  2JBR A;  2REH A;  2WBI A;  2HJN A;  2EBH X;  5B6B A;  4JEK A;  3MDD A;  1K8T A;  4L3X A;  4Q4U A;  4Q0T A;  2VIG A;  1EGD A;  5J71 A;  4JIO A;  3U33 A;  2YYK A;  2IX6 A;  2E81 A;  2D29 A;  3TOR A;  4NXL A;  4H85 A;  5BRK A;  1EGC A;  4ZYJ A;  2R03 A;  3LGQ A;  4HKR A;  4DOY A;  3VKH A;  2JIF A;  2OR0 A;  1R3B A;  3P4T A;  1XFV A;  5EZ3 A;  3OWM A;  1R2J A;  2OT4 A;  1X8Z A;  1X90 A;  2BU2 A;  2RDZ A;  2CX9 A;  4M9A A;  2A1T A;  1K90 A;  1U8V A;  4FF3 A;  4HR3 A;  2JBS A;  1PI1 A;  5GJV E;  1XFW A;  3EOM A;  3MDE A;  3D6B A;  3D9D A;  4E02 A;  4G97 A;  3OWA A;  2BU7 A;  3X0Y A;  2Q8F A;  3HWC A;  4X28 A;  2PNR A;  2YYG A;  2PG0 A;  1S26 A;  2VR0 A;  3Q22 A;  3C2P A;  1WS9 A;  3TZ0 A;  4KCF A;  5K3I A;  4L1F A;  1OAH A;  3LG1 A;  3Q23 A;  3UBR A;  3GNC A;  5K3H A;  4WJY A;  4KSA A;  3C3L A;  4KTO A;  4X28 C;  3MPI A;  1XFY A;  1XFX A;  3MMO A;  2DVL A;  3BNH A;  4H7Q A;  4MP2 A;  4MPE A;  4Q5C A;  3DJL A;  4LQS B;  4FF1 A;  3D9E A;  4MPN A;  2LFW A;  1GKZ A;  4Q5B A;  3Q0A A;  1RJ4 A;  2CJ8 A;  4FZ4 A;  2FP2 A;  2ZKJ A;  3OIB A;  2XS8 A;  4MP7 A;  2OEV A;  4E00 A;  2E80 A;  1XG2 B;  2RFQ A;  1RJ1 A;  3TTB A;  3MKH A;  4OO2 A;  3KML A;  1FS9 A;  2OEX A;  4L3Y A;  3Q24 A;  4P13 A;  2YYL A;  2ZDX A;  2CJ5 A;  2C0U A;  4O5M A;  2QR4 A;  2BTZ A;  2ZDY A;  2ZO5 A;  2Q8G A;  3F29 A;  4J1V A;  4FF4 A;  4ZXV A;  1K93 A;  4LQQ B;  3FCJ A;  5M4M A;  3TZ4 A;  4L38 A;  3SCE A;  5J6A A;  2VF1 A;  2RF7 A;  4IRN A;  4QIC A;  2XS1 A;  1UKW A;  4AI6 A;  1PK0 A;  2ZAF A;  2CJ7 A;  2CJ4 A;  1FS7 A;  5B5V A;  2E0A A;  3S7W A;  1RX0 A;  2AZE A;  3D9F A;  4HKS A;  3VKG A;  5BRM A;  3BNF A;  3N0R A;  2YYI A;  3CRK A;  4N5F A;  2C12 A;  1LVC A;  1BUC A;  2R0N A;  4Q17 A;  1Y8N A;  4JIZ A;  4L3Z A;  2BU8 A;  3SF6 A;  3D1I A;  4KS9 A;  4KSF A;  1GJV A;  4H81 A;  4P79 A;  4F0X A;  4MPC A;  3GQT A;  5M4N A;  4V26 A;  3VAD A;  1IVH A;  3TZ2 A;  3BNG A;  2F6L A;  3CRL A;  5B5W A;  3C46 A;  2JBT A;  1W07 A;  3D9G A;  2FON A;  3PFD A;  1T9G A;  4G5E A;  1QDB A;  4W9U A;  3X29 A;  2GBB A;  3RKH A;  1Y8P A;  3TZ5 A;  2AO2 A;  2R0M A;  5K3J A;  3AFE A;  3CE2 A;  3EON A;  4IV6 A;  1GKX A;  2BU6 A;  1UDY A;  3B96 A;  1XFZ A;  2J7A A;  4AKG A;  2Q8I A;  1RP3 A;  1JM6 A;  3GM6 A;  1GU6 A;  3SXQ A;  3M9V A;  1JQI A;  3MPJ A;  1SIQ A;  4U83 A;  2FP1 A;  2YYM A;  3L1T A;  3UU9 A;  3R7K A;  3MXL A;  3D2R A;  1X91 A;  2Z1Q A;  1IS2 A;  2YGW A;  3X0X A;  3FO3 A;  4V25 A;  5M4P A;  2Q8H A;  5K3G A;  1SK6 A;  3BNJ A;  1XFU A;  5GJW E;  4AKI A;  4AKH A;  1Y8O A;  4DZY A;  2OJQ A;  1SC5 A;  4XVX A;  4FF2 A; 
#chains in the Genus database with same CATH homology
 1EGE A;  2IX5 A;  3II9 A;  3SWO A;  1FS8 A;  2EBA A;  2UXW A;  4Q1O A;  3NF4 A;  2YYJ A;  2DDH A;  4RM7 A;  3AFF A;  1SIR A;  2JBR A;  2REH A;  2WBI A;  4JEK A;  3MDD A;  4L3X A;  4Q0T A;  4Q4U A;  2VIG A;  1EGD A;  2YYK A;  2IX6 A;  2E81 A;  2D29 A;  3TOR A;  4NXL A;  1EGC A;  4ZYJ A;  3LGQ A;  4DOY A;  2JIF A;  2OR0 A;  3P4T A;  3OWM A;  1R2J A;  2OT4 A;  2RDZ A;  2CX9 A;  4M9A A;  2A1T A;  1U8V A;  4HR3 A;  2JBS A;  3EOM A;  3MDE A;  3D6B A;  3D9D A;  3OWA A;  3X0Y A;  3HWC A;  4X28 A;  2YYG A;  2PG0 A;  2VR0 A;  1WS9 A;  4KCF A;  5K3I A;  4L1F A;  1OAH A;  3LG1 A;  3UBR A;  3GNC A;  5K3H A;  4WJY A;  4KTO A;  4X28 C;  3MPI A;  3MMO A;  2DVL A;  3BNH A;  4Q5C A;  3D9E A;  4Q5B A;  3OIB A;  2E80 A;  3TTB A;  2RFQ A;  3MKH A;  4OO2 A;  1FS9 A;  4L3Y A;  4P13 A;  2YYL A;  2C0U A;  4O5M A;  2ZO5 A;  3F29 A;  4ZXV A;  3FCJ A;  4L38 A;  3SCE A;  2RF7 A;  4IRN A;  1UKW A;  2ZAF A;  1FS7 A;  3S7W A;  1RX0 A;  3D9F A;  3BNF A;  2YYI A;  4N5F A;  2C12 A;  1BUC A;  2R0N A;  4Q17 A;  4L3Z A;  3SF6 A;  3D1I A;  3GQT A;  1IVH A;  3BNG A;  2JBT A;  1W07 A;  3D9G A;  2FON A;  3PFD A;  1T9G A;  4G5E A;  1QDB A;  4W9U A;  3RKH A;  2R0M A;  5K3J A;  3AFE A;  3EON A;  4IV6 A;  1UDY A;  3B96 A;  2J7A A;  3GM6 A;  1GU6 A;  3SXQ A;  3M9V A;  1JQI A;  3MPJ A;  1SIQ A;  4U83 A;  2YYM A;  3L1T A;  3UU9 A;  3R7K A;  3MXL A;  2Z1Q A;  1IS2 A;  3X0X A;  3FO3 A;  5K3G A;  3BNJ A;  4XVX A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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