4RM7A

The crystal structure of acyl-coa dehydrogenase from slackia heliotrinireducens dsm 20476
Total Genus 123
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
123
sequence length
386
structure length
375
Chain Sequence
NAMYDGLSRDEQRLLNHVREYGEKYFTPASISKWRKDQGLPDEVVKAFVDLDFNGFGVIHRRNHRTYDLFAQVLVIEELSRISGACLPFQNDLLQLQILEAFASSAQTSPFRTEYQDTGRLSYALAISEPEMRTHVTREGDTLVMNGTKMFVNNGEYAPALLVSAYDKTGDDPEFSFWMVPRSAAGIYAYPEQKIGQSMLPFATVRFDNVEVKESWRLKGSSKGFSQLYSLLEYGRVFTCAAALGEAQAAMEDAVAWARGREAQRIADLQQVQMKLTEMEVKLTNMRNLVYGAAREYDRGEHKRLSVALMKYYVPKAATEVASDAMQILGGRGYIQENRVSSIWQDCRGYQFADGTDEVMVVIAAPLILEQYKAS
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title The crystal structure of acyl-COA dehydrogenase from Slackia heliotrinireducens DSM 20476
rcsb
molecule tags Oxidoreductase
source organism Slackia heliotrinireducens
molecule keywords Acyl-CoA dehydrogenase
total genus 123
structure length 375
sequence length 386
ec nomenclature ec 1.3.8.1: Short-chain acyl-CoA dehydrogenase.
pdb deposition date 2014-10-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00441 Acyl-CoA_dh_1 Acyl-CoA dehydrogenase, C-terminal domain
A PF02770 Acyl-CoA_dh_M Acyl-CoA dehydrogenase, middle domain
A PF02771 Acyl-CoA_dh_N Acyl-CoA dehydrogenase, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.540.10 Mainly Alpha Orthogonal Bundle Butyryl-Coa Dehydrogenase, subunit A; domain 1 Acyl-CoA dehydrogenase/oxidase, N-terminal domain 4rm7A01
1.20.140.10 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A; domain 3 Butyryl-CoA Dehydrogenase, subunit A, domain 3 4rm7A03
2.40.110.10 Mainly Beta Beta Barrel Butyryl-CoA Dehydrogenase, subunit A; domain 2 Butyryl-CoA Dehydrogenase, subunit A, domain 2 4rm7A02
2D29A 3FO3A 3D6BA 2JBRA 3SF6A 3SXQA 3AFFA 3EONA 4M9AA 2R0MA 4WJYA 4X28A 5K3HA 4W9UA 2OR0A 2DVLA 2Z1QA 4O5MA 3R7KA 2OT4A 4ZXVA 2R0NA 4Q5BA 2YYIA 2A1TA 2RDZA 2ZO5A 1R2JA 3BNGA 3D9FA 3RKHA 4RM7A 4IV6A 2YYKA 3UU9A 2WBIA 4KCFA 4Q17A 3X0YA 3P4TA 1EGCA 2YYLA 4L3XA 3MKHA 3D1IA 2J7AA 4L3YA 3FCJA 3OWMA 4L1FA 1SIRA 3UBRA 3MPJA 4HR3A 5K3JA 1IS2A 1JQIA 3MDEA 2EBAA 1GU6A 3D9GA 3II9A 1FS7A 4L38A 4JEKA 2PG0A 2ZAFA 4IRNA 3F29A 3OIBA 2YYMA 3BNJA 1RX0A 2C12A 4OO2A 3TTBA 4Q5CA 3M9VA 4X28C 4ZYJA 2VR0A 3B96A 1FS9A 3X0XA 3D9EA 4Q1OA 3AFEA 3EOMA 3OWAA 3MMOA 2E80A 1EGEA 5K3IA 3LGQA 4U83A 2C0UA 3S7WA 3PFDA 1U8VA 1T9GA 2VIGA 1IVHA 3D9DA 2IX6A 2IX5A 3L1TA 2JIFA 3SCEA 2YYJA 3LG1A 2RF7A 1QDBA 4L3ZA 1EGDA 1BUCA 3GM6A 3TORA 3MXLA 3MDDA 2UXWA 2JBSA 4G5EA 2FONA 2YYGA 1WS9A 1OAHA 1UKWA 3BNFA 4Q4UA 4KTOA 4P13A 3NF4A 1FS8A 4Q0TA 2REHA 3MPIA 3GNCA 3HWCA 4NXLA 4DOYA 1UDYA 4N5FA 3SWOA 2E81A 2CX9A 3GQTA 4XVXA 2DDHA 2RFQA 2JBTA 1SIQA 5K3GA 1W07A 3BNHA
chains in the Genus database with same CATH superfamily
2D29A 1SK6A 2YGWA 4DZYA 1PK0A 1Y0VA 4LQSB 3FO3A 2R03A 3D6BA 2JBRA 5EZ3A 3SF6A 1XFVA 4J1VA 2QR4A 3SXQA 4QICA 3TZ2A 2EBHX 3VKHA 2R05A 3AFFA 3EONA 4M9AA 2ZKJA 2R0MA 4WJYA 5B5VA 4X28A 1PI1A 3C2PA 5K3HA 2Q8FA 4W9UA 2OR0A 4AI6A 2DVLA 2Z1QA 3CE2A 4O5MA 3R7KA 4FF1A 1Y8NA 1SC5A 1R3BA 4ZXVA 2OT4A 3TZ4A 2F6LA 2R0NA 2R02A 3U33A 4Q5BA 4E00A 2EBFX 2ZDYA 2YYIA 4MPEA 1X90A 2A1TA 1K90A 2PNRA 2RDZA 3Q23A 2ZO5A 5J71A 4P79A 5B5WA 1R2JA 2OEVA 2Q8GA 3Q22A 1XFYA 2OJQA 3BNGA 3D9FA 3RKHA 4RM7A 4IV6A 2FP2A 2FP1A 2XS1A 2YYKA 2WBIA 4KCFA 1XG2B 2BU5A 4Q17A 5GJVE 3UU9A 4E02A 5M4MA 3X0YA 3CRLA 3C46A 4AKHA 3P4TA 5M4KA 3VADA 1EGCA 2YYLA 5J6AA 2BU2A 4L3XA 3MKHA 3D1IA 4JIZA 4H81A 2J7AA 4L3YA 3FCJA 3KMLA 3OWMA 4L1FA 3D2RA 1XFZA 2GBBA 4FF2A 1SIRA 2XS8A 3MPJA 2XQRB 3UBRA 4HR3A 4MPNA 3Q24A 5K3JA 1RJ4A 1IS2A 1JQIA 3MDEA 1XFXA 1S26A 2EBAA 1GU6A 4MP7A 2CJ5A 3D9GA 4V25A 3II9A 1FS7A 2VF1A 4L38A 1XFWA 4JEKA 2AO2A 2PG0A 2ZAFA 4IRNA 3F29A 4H85A 4HKSA 3OIBA 1X91A 2YYMA 3BNJA 5GJWE 1RX0A 2C12A 5M4PA 3DJLA 2Q8IA 4OO2A 3TTBA 4Q5CA 3M9VA 4X28C 4ZYJA 2VR0A 1GJVA 1JM6A 2CJ4A 2OEXA 2BU8A 3B96A 1FS9A 2BU7A 3X0XA 3D9EA 3CRKA 4JIOA 4Q1OA 3AFEA 3EOMA 3OWAA 3MMOA 2E80A 3X29A 5M4NA 4G97A 1EGEA 5K3IA 2CJ7A 3LGQA 4FZ4A 4U83A 4F0XA 2C0UA 3S7WA 3PFDA 1U8VA 1T9GA 2VIGA 2PO4A 4E01A 1IVHA 2EC5A 3VKGA 1X8ZA 2BTZA 3D9DA 3C3LA 4HKRA 4LQQB 3TZ5A 1K93A 2IX6A 2IX5A 3L1TA 4FF3A 2JIFA 3SCEA 2HJNA 5BRKA 4MP2A 1RJ1A 1K8TA 2YYJA 3LG1A 4H7QA 5BRMA 3TZ0A 2RF7A 4KSAA 1QDBA 1Y8OA 1EGDA 2AZEA 2E0AA 4L3ZA 2CJ8A 1BUCA 3GM6A 3TORA 3MXLA 4FF4A 3MDDA 2UXWA 1Y8PA 4MPCA 5B6BA 2JBSA 4G5EA 2FONA 4AKGA 1RP3A 2YYGA 1WS9A 1GKZA 1UKWA 1OAHA 2ZDXA 3BNFA 4Q4UA 4KTOA 4V26A 4P13A 3NF4A 2BU6A 1FS8A 1LVCA 4Q0TA 2REHA 3MPIA 1XFUA 1GKXA 3N0RA 4KSFA 3GNCA 3HWCA 4NXLA 4DOYA 1UDYA 4N5FA 3SWOA 2E81A 2CX9A 4KS9A 3GQTA 4XVXA 2DDHA 2RFQA 2CJ6A 2LFWA 4AKIA 2JBTA 2Q8HA 1SIQA 5K3GA 1W07A 3BNHA 3Q0AA
chains in the Genus database with same CATH topology
2D29A 3FO3A 3D6BA 2JBRA 3SF6A 3SXQA 3AFFA 3EONA 4M9AA 2R0MA 4WJYA 4X28A 5K3HA 4W9UA 2OR0A 2DVLA 2Z1QA 4O5MA 3R7KA 2OT4A 4ZXVA 2R0NA 4Q5BA 2YYIA 2A1TA 2RDZA 2ZO5A 1R2JA 3BNGA 3D9FA 3RKHA 4RM7A 4IV6A 2YYKA 3UU9A 2WBIA 4KCFA 4Q17A 3X0YA 3P4TA 1EGCA 2YYLA 4L3XA 3MKHA 3D1IA 2J7AA 4L3YA 3FCJA 3OWMA 4L1FA 1SIRA 3UBRA 3MPJA 4HR3A 5K3JA 1IS2A 1JQIA 3MDEA 2EBAA 1GU6A 3D9GA 3II9A 1FS7A 4L38A 4JEKA 2PG0A 2ZAFA 4IRNA 3F29A 3OIBA 2YYMA 3BNJA 1RX0A 2C12A 4OO2A 3TTBA 4Q5CA 3M9VA 4X28C 4ZYJA 2VR0A 3B96A 1FS9A 3X0XA 3D9EA 4Q1OA 3AFEA 3EOMA 3OWAA 3MMOA 2E80A 1EGEA 5K3IA 3LGQA 4U83A 2C0UA 3S7WA 3PFDA 1U8VA 1T9GA 2VIGA 1IVHA 3D9DA 2IX6A 2IX5A 3L1TA 2JIFA 3SCEA 2YYJA 3LG1A 2RF7A 1QDBA 4L3ZA 1EGDA 1BUCA 3GM6A 3TORA 3MXLA 3MDDA 2UXWA 2JBSA 4G5EA 2FONA 2YYGA 1WS9A 1OAHA 1UKWA 3BNFA 4Q4UA 4KTOA 4P13A 3NF4A 1FS8A 4Q0TA 2REHA 3MPIA 3GNCA 3HWCA 4NXLA 4DOYA 1UDYA 4N5FA 3SWOA 2E81A 2CX9A 3GQTA 4XVXA 2DDHA 2RFQA 2JBTA 1SIQA 5K3GA 1W07A 3BNHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2D29 A;  3FO3 A;  3D6B A;  2JBR A;  3SF6 A;  3SXQ A;  3AFF A;  3EON A;  4M9A A;  2R0M A;  4WJY A;  4X28 A;  5K3H A;  4W9U A;  2OR0 A;  2DVL A;  2Z1Q A;  4O5M A;  3R7K A;  2OT4 A;  4ZXV A;  2R0N A;  4Q5B A;  2YYI A;  2A1T A;  2RDZ A;  2ZO5 A;  1R2J A;  3BNG A;  3D9F A;  3RKH A;  4RM7 A;  4IV6 A;  2YYK A;  3UU9 A;  2WBI A;  4KCF A;  4Q17 A;  3X0Y A;  3P4T A;  1EGC A;  2YYL A;  4L3X A;  3MKH A;  3D1I A;  2J7A A;  4L3Y A;  3FCJ A;  3OWM A;  4L1F A;  1SIR A;  3UBR A;  3MPJ A;  4HR3 A;  5K3J A;  1IS2 A;  1JQI A;  3MDE A;  2EBA A;  1GU6 A;  3D9G A;  3II9 A;  1FS7 A;  4L38 A;  4JEK A;  2PG0 A;  2ZAF A;  4IRN A;  3F29 A;  3OIB A;  2YYM A;  3BNJ A;  1RX0 A;  2C12 A;  4OO2 A;  3TTB A;  4Q5C A;  3M9V A;  4X28 C;  4ZYJ A;  2VR0 A;  3B96 A;  1FS9 A;  3X0X A;  3D9E A;  4Q1O A;  3AFE A;  3EOM A;  3OWA A;  3MMO A;  2E80 A;  1EGE A;  5K3I A;  3LGQ A;  4U83 A;  2C0U A;  3S7W A;  3PFD A;  1U8V A;  1T9G A;  2VIG A;  1IVH A;  3D9D A;  2IX6 A;  2IX5 A;  3L1T A;  2JIF A;  3SCE A;  2YYJ A;  3LG1 A;  2RF7 A;  1QDB A;  4L3Z A;  1EGD A;  1BUC A;  3GM6 A;  3TOR A;  3MXL A;  3MDD A;  2UXW A;  2JBS A;  4G5E A;  2FON A;  2YYG A;  1WS9 A;  1OAH A;  1UKW A;  3BNF A;  4Q4U A;  4KTO A;  4P13 A;  3NF4 A;  1FS8 A;  4Q0T A;  2REH A;  3MPI A;  3GNC A;  3HWC A;  4NXL A;  4DOY A;  1UDY A;  4N5F A;  3SWO A;  2E81 A;  2CX9 A;  3GQT A;  4XVX A;  2DDH A;  2RFQ A;  2JBT A;  1SIQ A;  5K3G A;  1W07 A;  3BNH A; 
#chains in the Genus database with same CATH topology
 2D29 A;  1SK6 A;  2YGW A;  4DZY A;  1PK0 A;  1Y0V A;  4LQS B;  3FO3 A;  2R03 A;  3D6B A;  2JBR A;  5EZ3 A;  3SF6 A;  1XFV A;  4J1V A;  2QR4 A;  3SXQ A;  4QIC A;  3TZ2 A;  2EBH X;  3VKH A;  2R05 A;  3AFF A;  3EON A;  4M9A A;  2ZKJ A;  2R0M A;  4WJY A;  5B5V A;  4X28 A;  1PI1 A;  3C2P A;  5K3H A;  2Q8F A;  4W9U A;  2OR0 A;  4AI6 A;  2DVL A;  2Z1Q A;  3CE2 A;  4O5M A;  3R7K A;  4FF1 A;  1Y8N A;  1SC5 A;  1R3B A;  4ZXV A;  2OT4 A;  3TZ4 A;  2F6L A;  2R0N A;  2R02 A;  3U33 A;  4Q5B A;  4E00 A;  2EBF X;  2ZDY A;  2YYI A;  4MPE A;  1X90 A;  2A1T A;  1K90 A;  2PNR A;  2RDZ A;  3Q23 A;  2ZO5 A;  5J71 A;  4P79 A;  5B5W A;  1R2J A;  2OEV A;  2Q8G A;  3Q22 A;  1XFY A;  2OJQ A;  3BNG A;  3D9F A;  3RKH A;  4RM7 A;  4IV6 A;  2FP2 A;  2FP1 A;  2XS1 A;  2YYK A;  2WBI A;  4KCF A;  1XG2 B;  2BU5 A;  4Q17 A;  5GJV E;  3UU9 A;  4E02 A;  5M4M A;  3X0Y A;  3CRL A;  3C46 A;  4AKH A;  3P4T A;  5M4K A;  3VAD A;  1EGC A;  2YYL A;  5J6A A;  2BU2 A;  4L3X A;  3MKH A;  3D1I A;  4JIZ A;  4H81 A;  2J7A A;  4L3Y A;  3FCJ A;  3KML A;  3OWM A;  4L1F A;  3D2R A;  1XFZ A;  2GBB A;  4FF2 A;  1SIR A;  2XS8 A;  3MPJ A;  2XQR B;  3UBR A;  4HR3 A;  4MPN A;  3Q24 A;  5K3J A;  1RJ4 A;  1IS2 A;  1JQI A;  3MDE A;  1XFX A;  1S26 A;  2EBA A;  1GU6 A;  4MP7 A;  2CJ5 A;  3D9G A;  4V25 A;  3II9 A;  1FS7 A;  2VF1 A;  4L38 A;  1XFW A;  4JEK A;  2AO2 A;  2PG0 A;  2ZAF A;  4IRN A;  3F29 A;  4H85 A;  4HKS A;  3OIB A;  1X91 A;  2YYM A;  3BNJ A;  5GJW E;  1RX0 A;  2C12 A;  5M4P A;  3DJL A;  2Q8I A;  4OO2 A;  3TTB A;  4Q5C A;  3M9V A;  4X28 C;  4ZYJ A;  2VR0 A;  1GJV A;  1JM6 A;  2CJ4 A;  2OEX A;  2BU8 A;  3B96 A;  1FS9 A;  2BU7 A;  3X0X A;  3D9E A;  3CRK A;  4JIO A;  4Q1O A;  3AFE A;  3EOM A;  3OWA A;  3MMO A;  2E80 A;  3X29 A;  5M4N A;  4G97 A;  1EGE A;  5K3I A;  2CJ7 A;  3LGQ A;  4FZ4 A;  4U83 A;  4F0X A;  2C0U A;  3S7W A;  3PFD A;  1U8V A;  1T9G A;  2VIG A;  2PO4 A;  4E01 A;  1IVH A;  2EC5 A;  3VKG A;  1X8Z A;  2BTZ A;  3D9D A;  3C3L A;  4HKR A;  4LQQ B;  3TZ5 A;  1K93 A;  2IX6 A;  2IX5 A;  3L1T A;  4FF3 A;  2JIF A;  3SCE A;  2HJN A;  5BRK A;  4MP2 A;  1RJ1 A;  1K8T A;  2YYJ A;  3LG1 A;  4H7Q A;  5BRM A;  3TZ0 A;  2RF7 A;  4KSA A;  1QDB A;  1Y8O A;  1EGD A;  2AZE A;  2E0A A;  4L3Z A;  2CJ8 A;  1BUC A;  3GM6 A;  3TOR A;  3MXL A;  4FF4 A;  3MDD A;  2UXW A;  1Y8P A;  4MPC A;  5B6B A;  2JBS A;  4G5E A;  2FON A;  4AKG A;  1RP3 A;  2YYG A;  1WS9 A;  1GKZ A;  1UKW A;  1OAH A;  2ZDX A;  3BNF A;  4Q4U A;  4KTO A;  4V26 A;  4P13 A;  3NF4 A;  2BU6 A;  1FS8 A;  1LVC A;  4Q0T A;  2REH A;  3MPI A;  1XFU A;  1GKX A;  3N0R A;  4KSF A;  3GNC A;  3HWC A;  4NXL A;  4DOY A;  1UDY A;  4N5F A;  3SWO A;  2E81 A;  2CX9 A;  4KS9 A;  3GQT A;  4XVX A;  2DDH A;  2RFQ A;  2CJ6 A;  2LFW A;  4AKI A;  2JBT A;  2Q8H A;  1SIQ A;  5K3G A;  1W07 A;  3BNH A;  3Q0A A; 
#chains in the Genus database with same CATH homology
 2D29 A;  3FO3 A;  3D6B A;  2JBR A;  3SF6 A;  3SXQ A;  3AFF A;  3EON A;  4M9A A;  2R0M A;  4WJY A;  4X28 A;  5K3H A;  4W9U A;  2OR0 A;  2DVL A;  2Z1Q A;  4O5M A;  3R7K A;  2OT4 A;  4ZXV A;  2R0N A;  4Q5B A;  2YYI A;  2A1T A;  2RDZ A;  2ZO5 A;  1R2J A;  3BNG A;  3D9F A;  3RKH A;  4RM7 A;  4IV6 A;  2YYK A;  3UU9 A;  2WBI A;  4KCF A;  4Q17 A;  3X0Y A;  3P4T A;  1EGC A;  2YYL A;  4L3X A;  3MKH A;  3D1I A;  2J7A A;  4L3Y A;  3FCJ A;  3OWM A;  4L1F A;  1SIR A;  3UBR A;  3MPJ A;  4HR3 A;  5K3J A;  1IS2 A;  1JQI A;  3MDE A;  2EBA A;  1GU6 A;  3D9G A;  3II9 A;  1FS7 A;  4L38 A;  4JEK A;  2PG0 A;  2ZAF A;  4IRN A;  3F29 A;  3OIB A;  2YYM A;  3BNJ A;  1RX0 A;  2C12 A;  4OO2 A;  3TTB A;  4Q5C A;  3M9V A;  4X28 C;  4ZYJ A;  2VR0 A;  3B96 A;  1FS9 A;  3X0X A;  3D9E A;  4Q1O A;  3AFE A;  3EOM A;  3OWA A;  3MMO A;  2E80 A;  1EGE A;  5K3I A;  3LGQ A;  4U83 A;  2C0U A;  3S7W A;  3PFD A;  1U8V A;  1T9G A;  2VIG A;  1IVH A;  3D9D A;  2IX6 A;  2IX5 A;  3L1T A;  2JIF A;  3SCE A;  2YYJ A;  3LG1 A;  2RF7 A;  1QDB A;  4L3Z A;  1EGD A;  1BUC A;  3GM6 A;  3TOR A;  3MXL A;  3MDD A;  2UXW A;  2JBS A;  4G5E A;  2FON A;  2YYG A;  1WS9 A;  1OAH A;  1UKW A;  3BNF A;  4Q4U A;  4KTO A;  4P13 A;  3NF4 A;  1FS8 A;  4Q0T A;  2REH A;  3MPI A;  3GNC A;  3HWC A;  4NXL A;  4DOY A;  1UDY A;  4N5F A;  3SWO A;  2E81 A;  2CX9 A;  3GQT A;  4XVX A;  2DDH A;  2RFQ A;  2JBT A;  1SIQ A;  5K3G A;  1W07 A;  3BNH A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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