1JQIA

Crystal structure of rat short chain acyl-coa dehydrogenase complexed with acetoacetyl-coa
Total Genus 141
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
141
sequence length
384
structure length
384
Chain Sequence
VYQSVELPETHQMLRQTCRDFAEKELVPIAAQLDKEHLFPTSQVKKMGELGLLAMDVPEELSGAGLDYLAYSIALEEISRGCASTGVIMSVNNSLYLGPILKFGSSQQKQQWITPFTNGDKIGCFALSEPGNGSDAGAASTTAREEGDSWVLNGTKAWITNSWEASATVVFASTDRSRQNKGISAFLVPMPTPGLTLGKKEDKLGIRASSTANLIFEDCRIPKENLLGEPGMGFKIAMQTLDMGRIGIASQALGIAQASLDCAVKYAENRHAFGAPLTKLQNIQFKLADMALALESARLLTWRAAMLKDNKKPFTKESAMAKLAASEAATAISHQAIQILGGMGYVTEMPAERYYRDARITEIYEGTSEIQRLVIAGHLLRSYR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords short chain acyl-CoA dehydrogenase
publication title Crystal structure of rat short chain acyl-CoA dehydrogenase complexed with acetoacetyl-CoA: comparison with other acyl-CoA dehydrogenases.
pubmed doi rcsb
source organism Rattus norvegicus
total genus 141
structure length 384
sequence length 384
chains with identical sequence B
ec nomenclature ec 1.3.8.1: Short-chain acyl-CoA dehydrogenase.
pdb deposition date 2001-08-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00441 Acyl-CoA_dh_1 Acyl-CoA dehydrogenase, C-terminal domain
A PF02770 Acyl-CoA_dh_M Acyl-CoA dehydrogenase, middle domain
A PF02771 Acyl-CoA_dh_N Acyl-CoA dehydrogenase, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.540.10 Mainly Alpha Orthogonal Bundle Butyryl-Coa Dehydrogenase, subunit A; domain 1 Acyl-CoA dehydrogenase/oxidase, N-terminal domain 1jqiA01
1.20.140.10 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A; domain 3 Butyryl-CoA Dehydrogenase, subunit A, domain 3 1jqiA03
2.40.110.10 Mainly Beta Beta Barrel Butyryl-CoA Dehydrogenase, subunit A; domain 2 Butyryl-CoA Dehydrogenase, subunit A, domain 2 1jqiA02
2VIGA 4Q5CA 4L3YA 3L1TA 1U8VA 3OWMA 3GM6A 4G5EA 3MPJA 1FS8A 1W07A 2PG0A 3EONA 1EGEA 4DOYA 2YYKA 3AFEA 3X0XA 3HWCA 2DVLA 4KTOA 4N5FA 2ZAFA 1FS9A 2YYGA 1EGCA 4Q4UA 2JIFA 2VR0A 4OO2A 1QDBA 2UXWA 1IVHA 3S7WA 4M9AA 2RFQA 4JEKA 2IX6A 3MKHA 4W9UA 4X28C 2C12A 2CX9A 3FCJA 3D9EA 3P4TA 2REHA 4L3XA 3BNHA 4L1FA 3MDEA 4IV6A 2FONA 1FS7A 1OAHA 2R0MA 5K3JA 2DDHA 2ZO5A 2Z1QA 2YYIA 5K3GA 2R0NA 2YYJA 4Q0TA 2YYLA 2RF7A 1WS9A 2E81A 1SIRA 4X28A 3AFFA 3BNJA 3FO3A 3II9A 2J7AA 1EGDA 4Q1OA 3F29A 2D29A 2JBRA 2E80A 2EBAA 1UDYA 4KCFA 3MXLA 4XVXA 3MDDA 4L3ZA 2OR0A 3PFDA 3MPIA 3OIBA 3D1IA 1RX0A 3NF4A 3TTBA 2OT4A 3BNGA 4P13A 5K3IA 3OWAA 2RDZA 4Q5BA 3R7KA 4IRNA 3SF6A 2A1TA 1BUCA 1SIQA 3X0YA 1GU6A 4Q17A 3D9GA 3GQTA 1T9GA 4U83A 3SCEA 1UKWA 3B96A 3D9DA 3EOMA 5K3HA 4WJYA 3BNFA 4ZYJA 3D6BA 2WBIA 1IS2A 1JQIA 2IX5A 2C0UA 4NXLA 3LGQA 4ZXVA 1R2JA 3LG1A 3UU9A 3MMOA 2JBTA 2JBSA 4RM7A 3TORA 4O5MA 3SXQA 3M9VA 3RKHA 3D9FA 2YYMA 3SWOA 4L38A 4HR3A 3GNCA 3UBRA
chains in the Genus database with same CATH superfamily
2VIGA 4Q5CA 4L3YA 1XFUA 3L1TA 4MPEA 1U8VA 3OWMA 3GM6A 4G5EA 3MPJA 4G97A 4V25A 1FS8A 1W07A 2AZEA 2PG0A 3EONA 3N0RA 1EGEA 4DOYA 2YYKA 3TZ4A 3AFEA 3TZ5A 3Q22A 3X0XA 2EBHX 1K93A 1GKZA 3HWCA 2DVLA 4KTOA 1SC5A 4N5FA 2ZAFA 2FP1A 4JIOA 2R02A 1FS9A 2YYGA 3CRKA 1EGCA 4LQSB 4Q4UA 2JIFA 2VR0A 4JIZA 1QDBA 4OO2A 3CRLA 2UXWA 2HJNA 1IVHA 2Q8FA 3S7WA 4M9AA 5J71A 2RFQA 4JEKA 2IX6A 3MKHA 4W9UA 4X28C 2BU7A 2PNRA 2C12A 4HKSA 2CX9A 3FCJA 3D9EA 4FZ4A 3P4TA 2CJ6A 4HKRA 3U33A 1R3BA 4P79A 2REHA 2GBBA 4E01A 4F0XA 3C46A 2VF1A 4L3XA 3BNHA 1RJ1A 4L1FA 2ZDXA 4LQQB 3MDEA 2LFWA 4IV6A 2FONA 1FS7A 1OAHA 2R0MA 5GJWE 5K3JA 2DDHA 2EBFX 2ZO5A 2Z1QA 2YYIA 5K3GA 5B6BA 4KS9A 2R0NA 2YYJA 2BTZA 4Q0TA 2YYLA 4J1VA 3X29A 2RF7A 5B5VA 1WS9A 2QR4A 2E81A 4E02A 5M4PA 2BU5A 2F6LA 1SIRA 5M4NA 4AKIA 2BU8A 5J6AA 4H85A 5M4KA 5EZ3A 3VADA 4FF2A 4X28A 1XFVA 3AFFA 2BU2A 3BNJA 3FO3A 3II9A 3DJLA 2J7AA 1EGDA 3D2RA 2XS1A 2BU6A 2D29A 3F29A 4KSFA 4Q1OA 2JBRA 5BRMA 2Q8IA 3Q0AA 3VKGA 2FP2A 1RJ4A 2ZDYA 1GKXA 4E00A 1X91A 4H7QA 2XS8A 2E80A 2EBAA 1K90A 1UDYA 4MP7A 4V26A 4KCFA 1Y0VA 3MXLA 4XVXA 2AO2A 4DZYA 2R03A 2ZKJA 3MDDA 3TZ2A 3CE2A 4L3ZA 2OR0A 3PFDA 3MPIA 3OIBA 2OEXA 4AKHA 3D1IA 1RX0A 3NF4A 1GJVA 2OT4A 2Q8GA 3TTBA 3BNGA 4P13A 5K3IA 5BRKA 3OWAA 1XFXA 2RDZA 4Q5BA 3R7KA 4IRNA 3SF6A 3VKHA 1JM6A 2A1TA 1BUCA 2E0AA 2R05A 1SIQA 3X0YA 1GU6A 2XQRB 4Q17A 1XFWA 2CJ8A 1XG2B 4MPNA 3KMLA 3TZ0A 5M4MA 3Q24A 1X8ZA 3D9GA 4AI6A 4FF1A 3GQTA 1T9GA 1Y8OA 1X90A 4U83A 2YGWA 2Q8HA 3SCEA 1UKWA 3B96A 3D9DA 2PO4A 1XFYA 3C3LA 3EOMA 5K3HA 4MP2A 3BNFA 4MPCA 4WJYA 1Y8NA 4ZYJA 2OJQA 4KSAA 2CJ7A 4QICA 3D6BA 2WBIA 1IS2A 1JQIA 2IX5A 2C0UA 4NXLA 3LGQA 4ZXVA 1R2JA 1SK6A 2CJ4A 2OEVA 3LG1A 5B5WA 3C2PA 4FF4A 1XFZA 3UU9A 5GJVE 3MMOA 2JBTA 1LVCA 3Q23A 1PK0A 1K8TA 2JBSA 1S26A 4RM7A 3TORA 1RP3A 2EC5A 1Y8PA 4O5MA 3SXQA 4H81A 3M9VA 3RKHA 4FF3A 4AKGA 3D9FA 2YYMA 1PI1A 2CJ5A 3SWOA 4L38A 4HR3A 3GNCA 3UBRA
chains in the Genus database with same CATH topology
2VIGA 4Q5CA 4L3YA 3L1TA 1U8VA 3OWMA 3GM6A 4G5EA 3MPJA 1FS8A 1W07A 2PG0A 3EONA 1EGEA 4DOYA 2YYKA 3AFEA 3X0XA 3HWCA 2DVLA 4KTOA 4N5FA 2ZAFA 1FS9A 2YYGA 1EGCA 4Q4UA 2JIFA 2VR0A 4OO2A 1QDBA 2UXWA 1IVHA 3S7WA 4M9AA 2RFQA 4JEKA 2IX6A 3MKHA 4W9UA 4X28C 2C12A 2CX9A 3FCJA 3D9EA 3P4TA 2REHA 4L3XA 3BNHA 4L1FA 3MDEA 4IV6A 2FONA 1FS7A 1OAHA 2R0MA 5K3JA 2DDHA 2ZO5A 2Z1QA 2YYIA 5K3GA 2R0NA 2YYJA 4Q0TA 2YYLA 2RF7A 1WS9A 2E81A 1SIRA 4X28A 3AFFA 3BNJA 3FO3A 3II9A 2J7AA 1EGDA 4Q1OA 3F29A 2D29A 2JBRA 2E80A 2EBAA 1UDYA 4KCFA 3MXLA 4XVXA 3MDDA 4L3ZA 2OR0A 3PFDA 3MPIA 3OIBA 3D1IA 1RX0A 3NF4A 3TTBA 2OT4A 3BNGA 4P13A 5K3IA 3OWAA 2RDZA 4Q5BA 3R7KA 4IRNA 3SF6A 2A1TA 1BUCA 1SIQA 3X0YA 1GU6A 4Q17A 3D9GA 3GQTA 1T9GA 4U83A 3SCEA 1UKWA 3B96A 3D9DA 3EOMA 5K3HA 4WJYA 3BNFA 4ZYJA 3D6BA 2WBIA 1IS2A 1JQIA 2IX5A 2C0UA 4NXLA 3LGQA 4ZXVA 1R2JA 3LG1A 3UU9A 3MMOA 2JBTA 2JBSA 4RM7A 3TORA 4O5MA 3SXQA 3M9VA 3RKHA 3D9FA 2YYMA 3SWOA 4L38A 4HR3A 3GNCA 3UBRA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2VIG A;  4Q5C A;  4L3Y A;  3L1T A;  1U8V A;  3OWM A;  3GM6 A;  4G5E A;  3MPJ A;  1FS8 A;  1W07 A;  2PG0 A;  3EON A;  1EGE A;  4DOY A;  2YYK A;  3AFE A;  3X0X A;  3HWC A;  2DVL A;  4KTO A;  4N5F A;  2ZAF A;  1FS9 A;  2YYG A;  1EGC A;  4Q4U A;  2JIF A;  2VR0 A;  4OO2 A;  1QDB A;  2UXW A;  1IVH A;  3S7W A;  4M9A A;  2RFQ A;  4JEK A;  2IX6 A;  3MKH A;  4W9U A;  4X28 C;  2C12 A;  2CX9 A;  3FCJ A;  3D9E A;  3P4T A;  2REH A;  4L3X A;  3BNH A;  4L1F A;  3MDE A;  4IV6 A;  2FON A;  1FS7 A;  1OAH A;  2R0M A;  5K3J A;  2DDH A;  2ZO5 A;  2Z1Q A;  2YYI A;  5K3G A;  2R0N A;  2YYJ A;  4Q0T A;  2YYL A;  2RF7 A;  1WS9 A;  2E81 A;  1SIR A;  4X28 A;  3AFF A;  3BNJ A;  3FO3 A;  3II9 A;  2J7A A;  1EGD A;  4Q1O A;  3F29 A;  2D29 A;  2JBR A;  2E80 A;  2EBA A;  1UDY A;  4KCF A;  3MXL A;  4XVX A;  3MDD A;  4L3Z A;  2OR0 A;  3PFD A;  3MPI A;  3OIB A;  3D1I A;  1RX0 A;  3NF4 A;  3TTB A;  2OT4 A;  3BNG A;  4P13 A;  5K3I A;  3OWA A;  2RDZ A;  4Q5B A;  3R7K A;  4IRN A;  3SF6 A;  2A1T A;  1BUC A;  1SIQ A;  3X0Y A;  1GU6 A;  4Q17 A;  3D9G A;  3GQT A;  1T9G A;  4U83 A;  3SCE A;  1UKW A;  3B96 A;  3D9D A;  3EOM A;  5K3H A;  4WJY A;  3BNF A;  4ZYJ A;  3D6B A;  2WBI A;  1IS2 A;  1JQI A;  2IX5 A;  2C0U A;  4NXL A;  3LGQ A;  4ZXV A;  1R2J A;  3LG1 A;  3UU9 A;  3MMO A;  2JBT A;  2JBS A;  4RM7 A;  3TOR A;  4O5M A;  3SXQ A;  3M9V A;  3RKH A;  3D9F A;  2YYM A;  3SWO A;  4L38 A;  4HR3 A;  3GNC A;  3UBR A; 
#chains in the Genus database with same CATH topology
 2VIG A;  4Q5C A;  4L3Y A;  1XFU A;  3L1T A;  4MPE A;  1U8V A;  3OWM A;  3GM6 A;  4G5E A;  3MPJ A;  4G97 A;  4V25 A;  1FS8 A;  1W07 A;  2AZE A;  2PG0 A;  3EON A;  3N0R A;  1EGE A;  4DOY A;  2YYK A;  3TZ4 A;  3AFE A;  3TZ5 A;  3Q22 A;  3X0X A;  2EBH X;  1K93 A;  1GKZ A;  3HWC A;  2DVL A;  4KTO A;  1SC5 A;  4N5F A;  2ZAF A;  2FP1 A;  4JIO A;  2R02 A;  1FS9 A;  2YYG A;  3CRK A;  1EGC A;  4LQS B;  4Q4U A;  2JIF A;  2VR0 A;  4JIZ A;  1QDB A;  4OO2 A;  3CRL A;  2UXW A;  2HJN A;  1IVH A;  2Q8F A;  3S7W A;  4M9A A;  5J71 A;  2RFQ A;  4JEK A;  2IX6 A;  3MKH A;  4W9U A;  4X28 C;  2BU7 A;  2PNR A;  2C12 A;  4HKS A;  2CX9 A;  3FCJ A;  3D9E A;  4FZ4 A;  3P4T A;  2CJ6 A;  4HKR A;  3U33 A;  1R3B A;  4P79 A;  2REH A;  2GBB A;  4E01 A;  4F0X A;  3C46 A;  2VF1 A;  4L3X A;  3BNH A;  1RJ1 A;  4L1F A;  2ZDX A;  4LQQ B;  3MDE A;  2LFW A;  4IV6 A;  2FON A;  1FS7 A;  1OAH A;  2R0M A;  5GJW E;  5K3J A;  2DDH A;  2EBF X;  2ZO5 A;  2Z1Q A;  2YYI A;  5K3G A;  5B6B A;  4KS9 A;  2R0N A;  2YYJ A;  2BTZ A;  4Q0T A;  2YYL A;  4J1V A;  3X29 A;  2RF7 A;  5B5V A;  1WS9 A;  2QR4 A;  2E81 A;  4E02 A;  5M4P A;  2BU5 A;  2F6L A;  1SIR A;  5M4N A;  4AKI A;  2BU8 A;  5J6A A;  4H85 A;  5M4K A;  5EZ3 A;  3VAD A;  4FF2 A;  4X28 A;  1XFV A;  3AFF A;  2BU2 A;  3BNJ A;  3FO3 A;  3II9 A;  3DJL A;  2J7A A;  1EGD A;  3D2R A;  2XS1 A;  2BU6 A;  2D29 A;  3F29 A;  4KSF A;  4Q1O A;  2JBR A;  5BRM A;  2Q8I A;  3Q0A A;  3VKG A;  2FP2 A;  1RJ4 A;  2ZDY A;  1GKX A;  4E00 A;  1X91 A;  4H7Q A;  2XS8 A;  2E80 A;  2EBA A;  1K90 A;  1UDY A;  4MP7 A;  4V26 A;  4KCF A;  1Y0V A;  3MXL A;  4XVX A;  2AO2 A;  4DZY A;  2R03 A;  2ZKJ A;  3MDD A;  3TZ2 A;  3CE2 A;  4L3Z A;  2OR0 A;  3PFD A;  3MPI A;  3OIB A;  2OEX A;  4AKH A;  3D1I A;  1RX0 A;  3NF4 A;  1GJV A;  2OT4 A;  2Q8G A;  3TTB A;  3BNG A;  4P13 A;  5K3I A;  5BRK A;  3OWA A;  1XFX A;  2RDZ A;  4Q5B A;  3R7K A;  4IRN A;  3SF6 A;  3VKH A;  1JM6 A;  2A1T A;  1BUC A;  2E0A A;  2R05 A;  1SIQ A;  3X0Y A;  1GU6 A;  2XQR B;  4Q17 A;  1XFW A;  2CJ8 A;  1XG2 B;  4MPN A;  3KML A;  3TZ0 A;  5M4M A;  3Q24 A;  1X8Z A;  3D9G A;  4AI6 A;  4FF1 A;  3GQT A;  1T9G A;  1Y8O A;  1X90 A;  4U83 A;  2YGW A;  2Q8H A;  3SCE A;  1UKW A;  3B96 A;  3D9D A;  2PO4 A;  1XFY A;  3C3L A;  3EOM A;  5K3H A;  4MP2 A;  3BNF A;  4MPC A;  4WJY A;  1Y8N A;  4ZYJ A;  2OJQ A;  4KSA A;  2CJ7 A;  4QIC A;  3D6B A;  2WBI A;  1IS2 A;  1JQI A;  2IX5 A;  2C0U A;  4NXL A;  3LGQ A;  4ZXV A;  1R2J A;  1SK6 A;  2CJ4 A;  2OEV A;  3LG1 A;  5B5W A;  3C2P A;  4FF4 A;  1XFZ A;  3UU9 A;  5GJV E;  3MMO A;  2JBT A;  1LVC A;  3Q23 A;  1PK0 A;  1K8T A;  2JBS A;  1S26 A;  4RM7 A;  3TOR A;  1RP3 A;  2EC5 A;  1Y8P A;  4O5M A;  3SXQ A;  4H81 A;  3M9V A;  3RKH A;  4FF3 A;  4AKG A;  3D9F A;  2YYM A;  1PI1 A;  2CJ5 A;  3SWO A;  4L38 A;  4HR3 A;  3GNC A;  3UBR A; 
#chains in the Genus database with same CATH homology
 2VIG A;  4Q5C A;  4L3Y A;  3L1T A;  1U8V A;  3OWM A;  3GM6 A;  4G5E A;  3MPJ A;  1FS8 A;  1W07 A;  2PG0 A;  3EON A;  1EGE A;  4DOY A;  2YYK A;  3AFE A;  3X0X A;  3HWC A;  2DVL A;  4KTO A;  4N5F A;  2ZAF A;  1FS9 A;  2YYG A;  1EGC A;  4Q4U A;  2JIF A;  2VR0 A;  4OO2 A;  1QDB A;  2UXW A;  1IVH A;  3S7W A;  4M9A A;  2RFQ A;  4JEK A;  2IX6 A;  3MKH A;  4W9U A;  4X28 C;  2C12 A;  2CX9 A;  3FCJ A;  3D9E A;  3P4T A;  2REH A;  4L3X A;  3BNH A;  4L1F A;  3MDE A;  4IV6 A;  2FON A;  1FS7 A;  1OAH A;  2R0M A;  5K3J A;  2DDH A;  2ZO5 A;  2Z1Q A;  2YYI A;  5K3G A;  2R0N A;  2YYJ A;  4Q0T A;  2YYL A;  2RF7 A;  1WS9 A;  2E81 A;  1SIR A;  4X28 A;  3AFF A;  3BNJ A;  3FO3 A;  3II9 A;  2J7A A;  1EGD A;  4Q1O A;  3F29 A;  2D29 A;  2JBR A;  2E80 A;  2EBA A;  1UDY A;  4KCF A;  3MXL A;  4XVX A;  3MDD A;  4L3Z A;  2OR0 A;  3PFD A;  3MPI A;  3OIB A;  3D1I A;  1RX0 A;  3NF4 A;  3TTB A;  2OT4 A;  3BNG A;  4P13 A;  5K3I A;  3OWA A;  2RDZ A;  4Q5B A;  3R7K A;  4IRN A;  3SF6 A;  2A1T A;  1BUC A;  1SIQ A;  3X0Y A;  1GU6 A;  4Q17 A;  3D9G A;  3GQT A;  1T9G A;  4U83 A;  3SCE A;  1UKW A;  3B96 A;  3D9D A;  3EOM A;  5K3H A;  4WJY A;  3BNF A;  4ZYJ A;  3D6B A;  2WBI A;  1IS2 A;  1JQI A;  2IX5 A;  2C0U A;  4NXL A;  3LGQ A;  4ZXV A;  1R2J A;  3LG1 A;  3UU9 A;  3MMO A;  2JBT A;  2JBS A;  4RM7 A;  3TOR A;  4O5M A;  3SXQ A;  3M9V A;  3RKH A;  3D9F A;  2YYM A;  3SWO A;  4L38 A;  4HR3 A;  3GNC A;  3UBR A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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