1BUCA

Three-dimensional structure of butyryl-coa dehydrogenase from megasphaera elsdenii
Total Genus 154
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
154
sequence length
383
structure length
383
Chain Sequence
MDFNLTDIQQDFLKLAHDFGEKKLAPTVTERDHKGIYDKELIDELLSLGITGAYFEEKYGGSGDDGGDVLSYILAVEELAKYDAGVAITLSATVSLCANPIWQFGTEAQKEKFLVPLVEGTKLGAFGLTEPNAGTDASGQQTIATKNDDGTYTLNGSKIFITNGGAADIYIVFAMTDKSKGNHGITAFILEDGTPGFTYGKKEDKMGIHTSQTMELVFQDVKVPAENMLGEEGKGFKIAMMTLDGGRIGVAAQALGIAEAALADAVEYSKQRVQFGKPLCKFQSISFKLADMKMQIEAARNLVYKAACKKQEGKPFTVDAAIAKRVASDVAMRVTTEAVQIFGGYGYSEEYPVARHMRDAKITQIYEGTNEVQLMVTGGALLR
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords BUTYRYL-COA DEHYDROGENASE
publication title Three-dimensional structure of butyryl-CoA dehydrogenase from Megasphaera elsdenii.
pubmed doi rcsb
source organism Megasphaera elsdenii
total genus 154
structure length 383
sequence length 383
chains with identical sequence B
ec nomenclature ec 1.3.8.1: Short-chain acyl-CoA dehydrogenase.
pdb deposition date 1994-09-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00441 Acyl-CoA_dh_1 Acyl-CoA dehydrogenase, C-terminal domain
A PF02770 Acyl-CoA_dh_M Acyl-CoA dehydrogenase, middle domain
A PF02771 Acyl-CoA_dh_N Acyl-CoA dehydrogenase, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.540.10 Mainly Alpha Orthogonal Bundle Butyryl-Coa Dehydrogenase, subunit A; domain 1 Acyl-CoA dehydrogenase/oxidase, N-terminal domain 1bucA01
1.20.140.10 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A; domain 3 Butyryl-CoA Dehydrogenase, subunit A, domain 3 1bucA03
2.40.110.10 Mainly Beta Beta Barrel Butyryl-CoA Dehydrogenase, subunit A; domain 2 Butyryl-CoA Dehydrogenase, subunit A, domain 2 1bucA02
2C0UA 3MKHA 2D29A 3OWAA 4L38A 3S7WA 3D9GA 2RDZA 4M9AA 3GM6A 4L1FA 3MDEA 3BNFA 3D9FA 1GU6A 3X0XA 1T9GA 3LG1A 4Q0TA 3M9VA 2UXWA 3UU9A 3D9DA 1EGCA 3BNHA 1U8VA 4N5FA 2YYKA 3D1IA 3B96A 3SWOA 2VR0A 3LGQA 4KCFA 4WJYA 2REHA 1IS2A 3MPJA 3P4TA 5K3IA 1RX0A 2JBSA 1SIRA 3BNGA 3OWMA 4G5EA 3MPIA 3AFEA 1OAHA 4DOYA 2E81A 2WBIA 3TTBA 1FS8A 3TORA 3AFFA 1R2JA 4HR3A 4XVXA 4OO2A 4Q1OA 1FS9A 1IVHA 2DDHA 4L3ZA 2PG0A 4X28C 2RF7A 2VIGA 3MDDA 2E80A 2YYLA 3HWCA 3MMOA 1JQIA 3F29A 4L3XA 2IX6A 4JEKA 4Q17A 2DVLA 3RKHA 4Q5BA 3PFDA 3BNJA 2R0NA 1QDBA 2Z1QA 4P13A 2OT4A 5K3GA 3GQTA 3GNCA 3D9EA 4ZXVA 2IX5A 2C12A 4X28A 4IV6A 4KTOA 3SCEA 2EBAA 4Q5CA 2YYJA 2ZO5A 1EGDA 3MXLA 4W9UA 2FONA 4IRNA 2JIFA 4NXLA 3R7KA 1WS9A 3FO3A 3UBRA 3SXQA 3II9A 4O5MA 4ZYJA 2YYGA 2R0MA 4RM7A 3X0YA 1W07A 2ZAFA 2J7AA 2YYIA 2A1TA 4U83A 3NF4A 5K3HA 2JBTA 2CX9A 3SF6A 1FS7A 5K3JA 3FCJA 4L3YA 1UKWA 1SIQA 1UDYA 2JBRA 3EONA 1EGEA 3D6BA 3EOMA 3OIBA 3L1TA 2OR0A 2RFQA 1BUCA 4Q4UA 2YYMA
chains in the Genus database with same CATH superfamily
2C0UA 3MKHA 2D29A 3KMLA 3OWAA 1XFZA 4L38A 3S7WA 4MPEA 4LQSB 2BU5A 3U33A 4HKRA 2CJ8A 3D9GA 1XG2B 2RDZA 4M9AA 2EC5A 5B5VA 3GM6A 4L1FA 2HJNA 3MDEA 2GBBA 1Y8PA 2PO4A 3BNFA 1XFUA 1RP3A 2BU7A 1GKZA 2R02A 4MPNA 2XS8A 3D9FA 1GU6A 3X0XA 4HKSA 1T9GA 3LG1A 4Q0TA 3M9VA 2UXWA 3UU9A 3D9DA 5J6AA 5M4KA 4FF2A 1EGCA 3BNHA 1U8VA 2CJ5A 4N5FA 2YYKA 3D1IA 2AO2A 3B96A 4H85A 2AZEA 3SWOA 2VR0A 3LGQA 4KCFA 4KSFA 4WJYA 2REHA 1IS2A 3MPJA 3P4TA 1Y8OA 3TZ5A 5K3IA 4F0XA 1JM6A 3Q22A 1XFYA 1RX0A 2JBSA 1SIRA 4G97A 4P79A 2ZKJA 3D2RA 3BNGA 3CRLA 3Q0AA 3OWMA 4G5EA 3MPIA 5GJWE 3AFEA 1OAHA 4DOYA 2BU8A 2WBIA 2CJ4A 2E81A 3TTBA 3TZ4A 1FS8A 2FP1A 4H7QA 4DZYA 2F6LA 2Q8GA 3TORA 3AFFA 2VF1A 4KS9A 1R2JA 4HR3A 4XVXA 4OO2A 4Q1OA 4LQQB 1FS9A 1SK6A 1IVHA 2DDHA 2E0AA 2Q8IA 4E00A 2ZDYA 1X8ZA 4L3ZA 5M4MA 2PG0A 4X28C 1SC5A 2RF7A 5B6BA 2VIGA 4QICA 3MDDA 1S26A 2E80A 2OJQA 2YYLA 2Q8FA 4J1VA 3HWCA 3VKHA 3MMOA 1JQIA 3N0RA 2OEXA 3C3LA 3F29A 4L3XA 2XS1A 2IX6A 3CRKA 4AKGA 4JEKA 4Q17A 2DVLA 2Q8HA 3RKHA 3Q23A 4AKIA 4Q5BA 2CJ7A 1LVCA 2YGWA 3TZ0A 5M4PA 3C46A 3PFDA 3X29A 4E01A 3BNJA 2R0NA 1QDBA 1RJ1A 2OEVA 4JIZA 2Z1QA 4P13A 2PNRA 2OT4A 2EBHX 5K3GA 3GQTA 3GNCA 3VKGA 2XQRB 2BU6A 1Y8NA 2CJ6A 2R03A 4FZ4A 4MP7A 3D9EA 4ZXVA 3CE2A 2IX5A 2C12A 4X28A 4IV6A 4KTOA 5BRMA 3SCEA 5M4NA 3Q24A 2BTZA 2EBAA 4Q5CA 2YYJA 2ZO5A 1EGDA 3MXLA 4W9UA 2FONA 1GKXA 4E02A 4IRNA 5B5WA 2LFWA 3TZ2A 2JIFA 4NXLA 1XFXA 3R7KA 5BRKA 1WS9A 3FO3A 3UBRA 4FF1A 3SXQA 4V26A 4AKHA 3II9A 4O5MA 4ZYJA 2YYGA 4V25A 3C2PA 2R0MA 4RM7A 1XFVA 4MPCA 1PI1A 3X0YA 4H81A 4MP2A 1W07A 2ZAFA 4AI6A 5EZ3A 2J7AA 2YYIA 2ZDXA 1K90A 1X90A 4FF3A 3DJLA 2A1TA 1R3BA 2FP2A 4U83A 3NF4A 5K3HA 2JBTA 2CX9A 3SF6A 1FS7A 2R05A 2QR4A 2BU2A 1K8TA 5K3JA 1XFWA 3FCJA 4L3YA 1UKWA 1K93A 1SIQA 1GJVA 4JIOA 1RJ4A 3VADA 4KSAA 1UDYA 5J71A 1PK0A 2JBRA 1X91A 3EONA 4FF4A 1EGEA 3D6BA 3EOMA 3OIBA 3L1TA 2OR0A 2RFQA 1BUCA 1Y0VA 4Q4UA 2YYMA 2EBFX 5GJVE
chains in the Genus database with same CATH topology
2C0UA 3MKHA 2D29A 3OWAA 4L38A 3S7WA 3D9GA 2RDZA 4M9AA 3GM6A 4L1FA 3MDEA 3BNFA 3D9FA 1GU6A 3X0XA 1T9GA 3LG1A 4Q0TA 3M9VA 2UXWA 3UU9A 3D9DA 1EGCA 3BNHA 1U8VA 4N5FA 2YYKA 3D1IA 3B96A 3SWOA 2VR0A 3LGQA 4KCFA 4WJYA 2REHA 1IS2A 3MPJA 3P4TA 5K3IA 1RX0A 2JBSA 1SIRA 3BNGA 3OWMA 4G5EA 3MPIA 3AFEA 1OAHA 4DOYA 2E81A 2WBIA 3TTBA 1FS8A 3TORA 3AFFA 1R2JA 4HR3A 4XVXA 4OO2A 4Q1OA 1FS9A 1IVHA 2DDHA 4L3ZA 2PG0A 4X28C 2RF7A 2VIGA 3MDDA 2E80A 2YYLA 3HWCA 3MMOA 1JQIA 3F29A 4L3XA 2IX6A 4JEKA 4Q17A 2DVLA 3RKHA 4Q5BA 3PFDA 3BNJA 2R0NA 1QDBA 2Z1QA 4P13A 2OT4A 5K3GA 3GQTA 3GNCA 3D9EA 4ZXVA 2IX5A 2C12A 4X28A 4IV6A 4KTOA 3SCEA 2EBAA 4Q5CA 2YYJA 2ZO5A 1EGDA 3MXLA 4W9UA 2FONA 4IRNA 2JIFA 4NXLA 3R7KA 1WS9A 3FO3A 3UBRA 3SXQA 3II9A 4O5MA 4ZYJA 2YYGA 2R0MA 4RM7A 3X0YA 1W07A 2ZAFA 2J7AA 2YYIA 2A1TA 4U83A 3NF4A 5K3HA 2JBTA 2CX9A 3SF6A 1FS7A 5K3JA 3FCJA 4L3YA 1UKWA 1SIQA 1UDYA 2JBRA 3EONA 1EGEA 3D6BA 3EOMA 3OIBA 3L1TA 2OR0A 2RFQA 1BUCA 4Q4UA 2YYMA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2C0U A;  3MKH A;  2D29 A;  3OWA A;  4L38 A;  3S7W A;  3D9G A;  2RDZ A;  4M9A A;  3GM6 A;  4L1F A;  3MDE A;  3BNF A;  3D9F A;  1GU6 A;  3X0X A;  1T9G A;  3LG1 A;  4Q0T A;  3M9V A;  2UXW A;  3UU9 A;  3D9D A;  1EGC A;  3BNH A;  1U8V A;  4N5F A;  2YYK A;  3D1I A;  3B96 A;  3SWO A;  2VR0 A;  3LGQ A;  4KCF A;  4WJY A;  2REH A;  1IS2 A;  3MPJ A;  3P4T A;  5K3I A;  1RX0 A;  2JBS A;  1SIR A;  3BNG A;  3OWM A;  4G5E A;  3MPI A;  3AFE A;  1OAH A;  4DOY A;  2E81 A;  2WBI A;  3TTB A;  1FS8 A;  3TOR A;  3AFF A;  1R2J A;  4HR3 A;  4XVX A;  4OO2 A;  4Q1O A;  1FS9 A;  1IVH A;  2DDH A;  4L3Z A;  2PG0 A;  4X28 C;  2RF7 A;  2VIG A;  3MDD A;  2E80 A;  2YYL A;  3HWC A;  3MMO A;  1JQI A;  3F29 A;  4L3X A;  2IX6 A;  4JEK A;  4Q17 A;  2DVL A;  3RKH A;  4Q5B A;  3PFD A;  3BNJ A;  2R0N A;  1QDB A;  2Z1Q A;  4P13 A;  2OT4 A;  5K3G A;  3GQT A;  3GNC A;  3D9E A;  4ZXV A;  2IX5 A;  2C12 A;  4X28 A;  4IV6 A;  4KTO A;  3SCE A;  2EBA A;  4Q5C A;  2YYJ A;  2ZO5 A;  1EGD A;  3MXL A;  4W9U A;  2FON A;  4IRN A;  2JIF A;  4NXL A;  3R7K A;  1WS9 A;  3FO3 A;  3UBR A;  3SXQ A;  3II9 A;  4O5M A;  4ZYJ A;  2YYG A;  2R0M A;  4RM7 A;  3X0Y A;  1W07 A;  2ZAF A;  2J7A A;  2YYI A;  2A1T A;  4U83 A;  3NF4 A;  5K3H A;  2JBT A;  2CX9 A;  3SF6 A;  1FS7 A;  5K3J A;  3FCJ A;  4L3Y A;  1UKW A;  1SIQ A;  1UDY A;  2JBR A;  3EON A;  1EGE A;  3D6B A;  3EOM A;  3OIB A;  3L1T A;  2OR0 A;  2RFQ A;  1BUC A;  4Q4U A;  2YYM A; 
#chains in the Genus database with same CATH topology
 2C0U A;  3MKH A;  2D29 A;  3KML A;  3OWA A;  1XFZ A;  4L38 A;  3S7W A;  4MPE A;  4LQS B;  2BU5 A;  3U33 A;  4HKR A;  2CJ8 A;  3D9G A;  1XG2 B;  2RDZ A;  4M9A A;  2EC5 A;  5B5V A;  3GM6 A;  4L1F A;  2HJN A;  3MDE A;  2GBB A;  1Y8P A;  2PO4 A;  3BNF A;  1XFU A;  1RP3 A;  2BU7 A;  1GKZ A;  2R02 A;  4MPN A;  2XS8 A;  3D9F A;  1GU6 A;  3X0X A;  4HKS A;  1T9G A;  3LG1 A;  4Q0T A;  3M9V A;  2UXW A;  3UU9 A;  3D9D A;  5J6A A;  5M4K A;  4FF2 A;  1EGC A;  3BNH A;  1U8V A;  2CJ5 A;  4N5F A;  2YYK A;  3D1I A;  2AO2 A;  3B96 A;  4H85 A;  2AZE A;  3SWO A;  2VR0 A;  3LGQ A;  4KCF A;  4KSF A;  4WJY A;  2REH A;  1IS2 A;  3MPJ A;  3P4T A;  1Y8O A;  3TZ5 A;  5K3I A;  4F0X A;  1JM6 A;  3Q22 A;  1XFY A;  1RX0 A;  2JBS A;  1SIR A;  4G97 A;  4P79 A;  2ZKJ A;  3D2R A;  3BNG A;  3CRL A;  3Q0A A;  3OWM A;  4G5E A;  3MPI A;  5GJW E;  3AFE A;  1OAH A;  4DOY A;  2BU8 A;  2WBI A;  2CJ4 A;  2E81 A;  3TTB A;  3TZ4 A;  1FS8 A;  2FP1 A;  4H7Q A;  4DZY A;  2F6L A;  2Q8G A;  3TOR A;  3AFF A;  2VF1 A;  4KS9 A;  1R2J A;  4HR3 A;  4XVX A;  4OO2 A;  4Q1O A;  4LQQ B;  1FS9 A;  1SK6 A;  1IVH A;  2DDH A;  2E0A A;  2Q8I A;  4E00 A;  2ZDY A;  1X8Z A;  4L3Z A;  5M4M A;  2PG0 A;  4X28 C;  1SC5 A;  2RF7 A;  5B6B A;  2VIG A;  4QIC A;  3MDD A;  1S26 A;  2E80 A;  2OJQ A;  2YYL A;  2Q8F A;  4J1V A;  3HWC A;  3VKH A;  3MMO A;  1JQI A;  3N0R A;  2OEX A;  3C3L A;  3F29 A;  4L3X A;  2XS1 A;  2IX6 A;  3CRK A;  4AKG A;  4JEK A;  4Q17 A;  2DVL A;  2Q8H A;  3RKH A;  3Q23 A;  4AKI A;  4Q5B A;  2CJ7 A;  1LVC A;  2YGW A;  3TZ0 A;  5M4P A;  3C46 A;  3PFD A;  3X29 A;  4E01 A;  3BNJ A;  2R0N A;  1QDB A;  1RJ1 A;  2OEV A;  4JIZ A;  2Z1Q A;  4P13 A;  2PNR A;  2OT4 A;  2EBH X;  5K3G A;  3GQT A;  3GNC A;  3VKG A;  2XQR B;  2BU6 A;  1Y8N A;  2CJ6 A;  2R03 A;  4FZ4 A;  4MP7 A;  3D9E A;  4ZXV A;  3CE2 A;  2IX5 A;  2C12 A;  4X28 A;  4IV6 A;  4KTO A;  5BRM A;  3SCE A;  5M4N A;  3Q24 A;  2BTZ A;  2EBA A;  4Q5C A;  2YYJ A;  2ZO5 A;  1EGD A;  3MXL A;  4W9U A;  2FON A;  1GKX A;  4E02 A;  4IRN A;  5B5W A;  2LFW A;  3TZ2 A;  2JIF A;  4NXL A;  1XFX A;  3R7K A;  5BRK A;  1WS9 A;  3FO3 A;  3UBR A;  4FF1 A;  3SXQ A;  4V26 A;  4AKH A;  3II9 A;  4O5M A;  4ZYJ A;  2YYG A;  4V25 A;  3C2P A;  2R0M A;  4RM7 A;  1XFV A;  4MPC A;  1PI1 A;  3X0Y A;  4H81 A;  4MP2 A;  1W07 A;  2ZAF A;  4AI6 A;  5EZ3 A;  2J7A A;  2YYI A;  2ZDX A;  1K90 A;  1X90 A;  4FF3 A;  3DJL A;  2A1T A;  1R3B A;  2FP2 A;  4U83 A;  3NF4 A;  5K3H A;  2JBT A;  2CX9 A;  3SF6 A;  1FS7 A;  2R05 A;  2QR4 A;  2BU2 A;  1K8T A;  5K3J A;  1XFW A;  3FCJ A;  4L3Y A;  1UKW A;  1K93 A;  1SIQ A;  1GJV A;  4JIO A;  1RJ4 A;  3VAD A;  4KSA A;  1UDY A;  5J71 A;  1PK0 A;  2JBR A;  1X91 A;  3EON A;  4FF4 A;  1EGE A;  3D6B A;  3EOM A;  3OIB A;  3L1T A;  2OR0 A;  2RFQ A;  1BUC A;  1Y0V A;  4Q4U A;  2YYM A;  2EBF X;  5GJV E; 
#chains in the Genus database with same CATH homology
 2C0U A;  3MKH A;  2D29 A;  3OWA A;  4L38 A;  3S7W A;  3D9G A;  2RDZ A;  4M9A A;  3GM6 A;  4L1F A;  3MDE A;  3BNF A;  3D9F A;  1GU6 A;  3X0X A;  1T9G A;  3LG1 A;  4Q0T A;  3M9V A;  2UXW A;  3UU9 A;  3D9D A;  1EGC A;  3BNH A;  1U8V A;  4N5F A;  2YYK A;  3D1I A;  3B96 A;  3SWO A;  2VR0 A;  3LGQ A;  4KCF A;  4WJY A;  2REH A;  1IS2 A;  3MPJ A;  3P4T A;  5K3I A;  1RX0 A;  2JBS A;  1SIR A;  3BNG A;  3OWM A;  4G5E A;  3MPI A;  3AFE A;  1OAH A;  4DOY A;  2E81 A;  2WBI A;  3TTB A;  1FS8 A;  3TOR A;  3AFF A;  1R2J A;  4HR3 A;  4XVX A;  4OO2 A;  4Q1O A;  1FS9 A;  1IVH A;  2DDH A;  4L3Z A;  2PG0 A;  4X28 C;  2RF7 A;  2VIG A;  3MDD A;  2E80 A;  2YYL A;  3HWC A;  3MMO A;  1JQI A;  3F29 A;  4L3X A;  2IX6 A;  4JEK A;  4Q17 A;  2DVL A;  3RKH A;  4Q5B A;  3PFD A;  3BNJ A;  2R0N A;  1QDB A;  2Z1Q A;  4P13 A;  2OT4 A;  5K3G A;  3GQT A;  3GNC A;  3D9E A;  4ZXV A;  2IX5 A;  2C12 A;  4X28 A;  4IV6 A;  4KTO A;  3SCE A;  2EBA A;  4Q5C A;  2YYJ A;  2ZO5 A;  1EGD A;  3MXL A;  4W9U A;  2FON A;  4IRN A;  2JIF A;  4NXL A;  3R7K A;  1WS9 A;  3FO3 A;  3UBR A;  3SXQ A;  3II9 A;  4O5M A;  4ZYJ A;  2YYG A;  2R0M A;  4RM7 A;  3X0Y A;  1W07 A;  2ZAF A;  2J7A A;  2YYI A;  2A1T A;  4U83 A;  3NF4 A;  5K3H A;  2JBT A;  2CX9 A;  3SF6 A;  1FS7 A;  5K3J A;  3FCJ A;  4L3Y A;  1UKW A;  1SIQ A;  1UDY A;  2JBR A;  3EON A;  1EGE A;  3D6B A;  3EOM A;  3OIB A;  3L1T A;  2OR0 A;  2RFQ A;  1BUC A;  4Q4U A;  2YYM A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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