1BUCA

Three-dimensional structure of butyryl-coa dehydrogenase from megasphaera elsdenii
Total Genus 154
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
154
sequence length
383
structure length
383
Chain Sequence
MDFNLTDIQQDFLKLAHDFGEKKLAPTVTERDHKGIYDKELIDELLSLGITGAYFEEKYGGSGDDGGDVLSYILAVEELAKYDAGVAITLSATVSLCANPIWQFGTEAQKEKFLVPLVEGTKLGAFGLTEPNAGTDASGQQTIATKNDDGTYTLNGSKIFITNGGAADIYIVFAMTDKSKGNHGITAFILEDGTPGFTYGKKEDKMGIHTSQTMELVFQDVKVPAENMLGEEGKGFKIAMMTLDGGRIGVAAQALGIAEAALADAVEYSKQRVQFGKPLCKFQSISFKLADMKMQIEAARNLVYKAACKKQEGKPFTVDAAIAKRVASDVAMRVTTEAVQIFGGYGYSEEYPVARHMRDAKITQIYEGTNEVQLMVTGGALLR
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords BUTYRYL-COA DEHYDROGENASE
publication title Three-dimensional structure of butyryl-CoA dehydrogenase from Megasphaera elsdenii.
pubmed doi rcsb
source organism Megasphaera elsdenii
molecule tags Oxidoreductase
total genus 154
structure length 383
sequence length 383
chains with identical sequence B
ec nomenclature ec 1.3.8.1: Short-chain acyl-CoA dehydrogenase.
pdb deposition date 1994-09-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00441 Acyl-CoA_dh_1 Acyl-CoA dehydrogenase, C-terminal domain
A PF02770 Acyl-CoA_dh_M Acyl-CoA dehydrogenase, middle domain
A PF02771 Acyl-CoA_dh_N Acyl-CoA dehydrogenase, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.540.10 Mainly Alpha Orthogonal Bundle Butyryl-Coa Dehydrogenase, subunit A; domain 1 Acyl-CoA dehydrogenase/oxidase, N-terminal domain 1bucA01
1.20.140.10 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A; domain 3 Butyryl-CoA Dehydrogenase, subunit A, domain 3 1bucA03
2.40.110.10 Mainly Beta Beta Barrel Butyryl-CoA Dehydrogenase, subunit A; domain 2 Butyryl-CoA Dehydrogenase, subunit A, domain 2 1bucA02
4Q4UA 4P13A 4X28A 3SCEA 3OWMA 2IX6A 1U8VA 1JQIA 2FONA 4OO2A 3SXQA 1WS9A 3D9GA 3UU9A 4N5FA 2IX5A 5K3IA 2E80A 3MPIA 2J7AA 3LG1A 2PG0A 2RF7A 3TORA 1GU6A 2YYKA 2ZAFA 2YYLA 3R7KA 3D1IA 3L1TA 4Q0TA 3X0YA 4W9UA 2DDHA 1SIQA 1SIRA 2YYMA 3RKHA 1EGCA 1W07A 3D6BA 4G5EA 4ZYJA 3BNFA 3OIBA 3OWAA 2WBIA 1R2JA 4NXLA 3LGQA 1IS2A 4HR3A 3P4TA 3MPJA 1IVHA 3PFDA 4Q5BA 3BNJA 5K3GA 5K3JA 3FCJA 4XVXA 3AFFA 4DOYA 2JBTA 3GNCA 1RX0A 2YYGA 1EGDA 2JBRA 4O5MA 4KCFA 2CX9A 3NF4A 3BNHA 2R0NA 3SF6A 4Q1OA 3FO3A 2A1TA 1FS8A 4IRNA 4X28C 1EGEA 2YYIA 2EBAA 3EONA 2C12A 1UDYA 3D9DA 1FS7A 3B96A 4Q5CA 1T9GA 3BNGA 4IV6A 1FS9A 2YYJA 4L3XA 4U83A 1BUCA 5K3HA 2JIFA 3S7WA 1UKWA 3II9A 4L38A 3D9EA 2R0MA 3UBRA 2REHA 3EOMA 1QDBA 2UXWA 3SWOA 4M9AA 2C0UA 2DVLA 3MMOA 4L3ZA 3HWCA 2JBSA 4RM7A 2RFQA 4JEKA 2VR0A 3MDEA 2OR0A 3X0XA 4WJYA 2VIGA 2RDZA 1OAHA 3GM6A 4Q17A 3AFEA 3D9FA 2ZO5A 3MKHA 3F29A 4L3YA 2E81A 4KTOA 3GQTA 3MXLA 3TTBA 2Z1QA 4L1FA 4ZXVA 3MDDA 3M9VA 2OT4A 2D29A
chains in the Genus database with same CATH superfamily
4Q4UA 3Q23A 4KSAA 2YGWA 4P13A 4MPEA 4J1VA 3C46A 4MP2A 2BU8A 4FF4A 1K93A 4X28A 2BU7A 3SCEA 1S26A 2OEVA 4H81A 3VKHA 3OWMA 4AKHA 3N0RA 3CRKA 1X91A 2IX6A 1U8VA 1JQIA 2FONA 4OO2A 3SXQA 3TZ0A 1WS9A 3D9GA 1LVCA 1RJ4A 1Y8NA 2HJNA 1SK6A 2ZDXA 1X90A 5GJWE 4N5FA 1RP3A 2IX5A 2R03A 5K3IA 2E80A 3MPIA 2J7AA 3LG1A 5M4KA 4QICA 2PG0A 2RF7A 3TORA 1GU6A 2YYKA 3KMLA 2ZAFA 2YYLA 2LFWA 4E02A 3R7KA 3D1IA 3L1TA 4Q0TA 4E01A 5M4MA 3X0YA 4W9UA 2OJQA 2DDHA 3CRLA 1SIQA 4HKSA 1SIRA 2YYMA 3RKHA 1EGCA 1W07A 3D6BA 1X8ZA 4G5EA 4ZYJA 4JIOA 3BNFA 4V25A 1Y8PA 3OIBA 3OWAA 3UU9A 2WBIA 1R2JA 4NXLA 3LGQA 4P79A 1IS2A 4G97A 4MP7A 4HR3A 3P4TA 3MPJA 2Q8GA 1IVHA 3PFDA 2BU6A 3BNJA 5K3GA 4Q5BA 1PI1A 5K3JA 2XQRB 3FCJA 4XVXA 3AFFA 4DOYA 2JBTA 1XG2B 2Q8IA 3GNCA 1RX0A 2YYGA 1SC5A 3C2PA 1EGDA 2JBRA 4O5MA 4KCFA 2R02A 2CX9A 3NF4A 5EZ3A 3BNHA 2CJ7A 4H85A 2R0NA 3SF6A 4Q1OA 3FO3A 5BRMA 4E00A 1RJ1A 2A1TA 1FS8A 4IRNA 4X28C 3Q22A 1EGEA 2YYIA 4F0XA 2EBAA 3EONA 1JM6A 2ZKJA 2C12A 1UDYA 1GJVA 2PO4A 3D9DA 2Q8HA 1FS7A 2Q8FA 3B96A 1XFUA 3U33A 4FF1A 1XFXA 4DZYA 4Q5CA 3TZ4A 1T9GA 4LQSB 4V26A 3BNGA 4IV6A 2XS1A 1FS9A 2YYJA 4L3XA 5M4NA 4U83A 1BUCA 5K3HA 2JIFA 4KS9A 3S7WA 1UKWA 2VF1A 3II9A 3C3LA 2ZDYA 2AZEA 3X29A 4AKIA 4L38A 3Q0AA 3D9EA 2R0MA 4HKRA 3TZ2A 1Y0VA 2REHA 3EOMA 2E0AA 3UBRA 1QDBA 2UXWA 3SWOA 2EBFX 1GKZA 4FF3A 4M9AA 2C0UA 2DVLA 1GKXA 2GBBA 2AO2A 3MMOA 4H7QA 3HWCA 2JBSA 4RM7A 1XFZA 2RFQA 2EBHX 2PNRA 4L3ZA 5GJVE 4JEKA 5M4PA 2VR0A 3VADA 3MDEA 2OR0A 3D2RA 5B5VA 3X0XA 4AI6A 4WJYA 2VIGA 2RDZA 4FF2A 3VKGA 1K90A 1OAHA 3GM6A 4FZ4A 4MPNA 2OEXA 1XFYA 4Q17A 2CJ5A 3AFEA 2BTZA 5BRKA 2FP2A 5J6AA 3D9FA 1Y8OA 2ZO5A 3MKHA 2F6LA 3F29A 3CE2A 4L3YA 3Q24A 2EC5A 1XFVA 2E81A 4KTOA 3GQTA 1XFWA 2CJ8A 3MXLA 5B6BA 1K8TA 3TTBA 5B5WA 2CJ6A 2Z1QA 2BU5A 3DJLA 2XS8A 2BU2A 1R3BA 1PK0A 4JIZA 4L1FA 3TZ5A 5J71A 4ZXVA 3MDDA 3M9VA 4MPCA 2FP1A 2OT4A 2D29A 2CJ4A 4KSFA 2R05A 4AKGA 2QR4A 4LQQB
chains in the Genus database with same CATH topology
4Q4UA 4P13A 4X28A 3SCEA 3OWMA 2IX6A 1U8VA 1JQIA 2FONA 4OO2A 3SXQA 1WS9A 3D9GA 3UU9A 4N5FA 2IX5A 5K3IA 2E80A 3MPIA 2J7AA 3LG1A 2PG0A 2RF7A 3TORA 1GU6A 2YYKA 2ZAFA 2YYLA 3R7KA 3D1IA 3L1TA 4Q0TA 3X0YA 4W9UA 2DDHA 1SIQA 1SIRA 2YYMA 3RKHA 1EGCA 1W07A 3D6BA 4G5EA 4ZYJA 3BNFA 3OIBA 3OWAA 2WBIA 1R2JA 4NXLA 3LGQA 1IS2A 4HR3A 3P4TA 3MPJA 1IVHA 3PFDA 4Q5BA 3BNJA 5K3GA 5K3JA 3FCJA 4XVXA 3AFFA 4DOYA 2JBTA 3GNCA 1RX0A 2YYGA 1EGDA 2JBRA 4O5MA 4KCFA 2CX9A 3NF4A 3BNHA 2R0NA 3SF6A 4Q1OA 3FO3A 2A1TA 1FS8A 4IRNA 4X28C 1EGEA 2YYIA 2EBAA 3EONA 2C12A 1UDYA 3D9DA 1FS7A 3B96A 4Q5CA 1T9GA 3BNGA 4IV6A 1FS9A 2YYJA 4L3XA 4U83A 1BUCA 5K3HA 2JIFA 3S7WA 1UKWA 3II9A 4L38A 3D9EA 2R0MA 3UBRA 2REHA 3EOMA 1QDBA 2UXWA 3SWOA 4M9AA 2C0UA 2DVLA 3MMOA 4L3ZA 3HWCA 2JBSA 4RM7A 2RFQA 4JEKA 2VR0A 3MDEA 2OR0A 3X0XA 4WJYA 2VIGA 2RDZA 1OAHA 3GM6A 4Q17A 3AFEA 3D9FA 2ZO5A 3MKHA 3F29A 4L3YA 2E81A 4KTOA 3GQTA 3MXLA 3TTBA 2Z1QA 4L1FA 4ZXVA 3MDDA 3M9VA 2OT4A 2D29A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4Q4U A;  4P13 A;  4X28 A;  3SCE A;  3OWM A;  2IX6 A;  1U8V A;  1JQI A;  2FON A;  4OO2 A;  3SXQ A;  1WS9 A;  3D9G A;  3UU9 A;  4N5F A;  2IX5 A;  5K3I A;  2E80 A;  3MPI A;  2J7A A;  3LG1 A;  2PG0 A;  2RF7 A;  3TOR A;  1GU6 A;  2YYK A;  2ZAF A;  2YYL A;  3R7K A;  3D1I A;  3L1T A;  4Q0T A;  3X0Y A;  4W9U A;  2DDH A;  1SIQ A;  1SIR A;  2YYM A;  3RKH A;  1EGC A;  1W07 A;  3D6B A;  4G5E A;  4ZYJ A;  3BNF A;  3OIB A;  3OWA A;  2WBI A;  1R2J A;  4NXL A;  3LGQ A;  1IS2 A;  4HR3 A;  3P4T A;  3MPJ A;  1IVH A;  3PFD A;  4Q5B A;  3BNJ A;  5K3G A;  5K3J A;  3FCJ A;  4XVX A;  3AFF A;  4DOY A;  2JBT A;  3GNC A;  1RX0 A;  2YYG A;  1EGD A;  2JBR A;  4O5M A;  4KCF A;  2CX9 A;  3NF4 A;  3BNH A;  2R0N A;  3SF6 A;  4Q1O A;  3FO3 A;  2A1T A;  1FS8 A;  4IRN A;  4X28 C;  1EGE A;  2YYI A;  2EBA A;  3EON A;  2C12 A;  1UDY A;  3D9D A;  1FS7 A;  3B96 A;  4Q5C A;  1T9G A;  3BNG A;  4IV6 A;  1FS9 A;  2YYJ A;  4L3X A;  4U83 A;  1BUC A;  5K3H A;  2JIF A;  3S7W A;  1UKW A;  3II9 A;  4L38 A;  3D9E A;  2R0M A;  3UBR A;  2REH A;  3EOM A;  1QDB A;  2UXW A;  3SWO A;  4M9A A;  2C0U A;  2DVL A;  3MMO A;  4L3Z A;  3HWC A;  2JBS A;  4RM7 A;  2RFQ A;  4JEK A;  2VR0 A;  3MDE A;  2OR0 A;  3X0X A;  4WJY A;  2VIG A;  2RDZ A;  1OAH A;  3GM6 A;  4Q17 A;  3AFE A;  3D9F A;  2ZO5 A;  3MKH A;  3F29 A;  4L3Y A;  2E81 A;  4KTO A;  3GQT A;  3MXL A;  3TTB A;  2Z1Q A;  4L1F A;  4ZXV A;  3MDD A;  3M9V A;  2OT4 A;  2D29 A; 
#chains in the Genus database with same CATH topology
 4Q4U A;  3Q23 A;  4KSA A;  2YGW A;  4P13 A;  4MPE A;  4J1V A;  3C46 A;  4MP2 A;  2BU8 A;  4FF4 A;  1K93 A;  4X28 A;  2BU7 A;  3SCE A;  1S26 A;  2OEV A;  4H81 A;  3VKH A;  3OWM A;  4AKH A;  3N0R A;  3CRK A;  1X91 A;  2IX6 A;  1U8V A;  1JQI A;  2FON A;  4OO2 A;  3SXQ A;  3TZ0 A;  1WS9 A;  3D9G A;  1LVC A;  1RJ4 A;  1Y8N A;  2HJN A;  1SK6 A;  2ZDX A;  1X90 A;  5GJW E;  4N5F A;  1RP3 A;  2IX5 A;  2R03 A;  5K3I A;  2E80 A;  3MPI A;  2J7A A;  3LG1 A;  5M4K A;  4QIC A;  2PG0 A;  2RF7 A;  3TOR A;  1GU6 A;  2YYK A;  3KML A;  2ZAF A;  2YYL A;  2LFW A;  4E02 A;  3R7K A;  3D1I A;  3L1T A;  4Q0T A;  4E01 A;  5M4M A;  3X0Y A;  4W9U A;  2OJQ A;  2DDH A;  3CRL A;  1SIQ A;  4HKS A;  1SIR A;  2YYM A;  3RKH A;  1EGC A;  1W07 A;  3D6B A;  1X8Z A;  4G5E A;  4ZYJ A;  4JIO A;  3BNF A;  4V25 A;  1Y8P A;  3OIB A;  3OWA A;  3UU9 A;  2WBI A;  1R2J A;  4NXL A;  3LGQ A;  4P79 A;  1IS2 A;  4G97 A;  4MP7 A;  4HR3 A;  3P4T A;  3MPJ A;  2Q8G A;  1IVH A;  3PFD A;  2BU6 A;  3BNJ A;  5K3G A;  4Q5B A;  1PI1 A;  5K3J A;  2XQR B;  3FCJ A;  4XVX A;  3AFF A;  4DOY A;  2JBT A;  1XG2 B;  2Q8I A;  3GNC A;  1RX0 A;  2YYG A;  1SC5 A;  3C2P A;  1EGD A;  2JBR A;  4O5M A;  4KCF A;  2R02 A;  2CX9 A;  3NF4 A;  5EZ3 A;  3BNH A;  2CJ7 A;  4H85 A;  2R0N A;  3SF6 A;  4Q1O A;  3FO3 A;  5BRM A;  4E00 A;  1RJ1 A;  2A1T A;  1FS8 A;  4IRN A;  4X28 C;  3Q22 A;  1EGE A;  2YYI A;  4F0X A;  2EBA A;  3EON A;  1JM6 A;  2ZKJ A;  2C12 A;  1UDY A;  1GJV A;  2PO4 A;  3D9D A;  2Q8H A;  1FS7 A;  2Q8F A;  3B96 A;  1XFU A;  3U33 A;  4FF1 A;  1XFX A;  4DZY A;  4Q5C A;  3TZ4 A;  1T9G A;  4LQS B;  4V26 A;  3BNG A;  4IV6 A;  2XS1 A;  1FS9 A;  2YYJ A;  4L3X A;  5M4N A;  4U83 A;  1BUC A;  5K3H A;  2JIF A;  4KS9 A;  3S7W A;  1UKW A;  2VF1 A;  3II9 A;  3C3L A;  2ZDY A;  2AZE A;  3X29 A;  4AKI A;  4L38 A;  3Q0A A;  3D9E A;  2R0M A;  4HKR A;  3TZ2 A;  1Y0V A;  2REH A;  3EOM A;  2E0A A;  3UBR A;  1QDB A;  2UXW A;  3SWO A;  2EBF X;  1GKZ A;  4FF3 A;  4M9A A;  2C0U A;  2DVL A;  1GKX A;  2GBB A;  2AO2 A;  3MMO A;  4H7Q A;  3HWC A;  2JBS A;  4RM7 A;  1XFZ A;  2RFQ A;  2EBH X;  2PNR A;  4L3Z A;  5GJV E;  4JEK A;  5M4P A;  2VR0 A;  3VAD A;  3MDE A;  2OR0 A;  3D2R A;  5B5V A;  3X0X A;  4AI6 A;  4WJY A;  2VIG A;  2RDZ A;  4FF2 A;  3VKG A;  1K90 A;  1OAH A;  3GM6 A;  4FZ4 A;  4MPN A;  2OEX A;  1XFY A;  4Q17 A;  2CJ5 A;  3AFE A;  2BTZ A;  5BRK A;  2FP2 A;  5J6A A;  3D9F A;  1Y8O A;  2ZO5 A;  3MKH A;  2F6L A;  3F29 A;  3CE2 A;  4L3Y A;  3Q24 A;  2EC5 A;  1XFV A;  2E81 A;  4KTO A;  3GQT A;  1XFW A;  2CJ8 A;  3MXL A;  5B6B A;  1K8T A;  3TTB A;  5B5W A;  2CJ6 A;  2Z1Q A;  2BU5 A;  3DJL A;  2XS8 A;  2BU2 A;  1R3B A;  1PK0 A;  4JIZ A;  4L1F A;  3TZ5 A;  5J71 A;  4ZXV A;  3MDD A;  3M9V A;  4MPC A;  2FP1 A;  2OT4 A;  2D29 A;  2CJ4 A;  4KSF A;  2R05 A;  4AKG A;  2QR4 A;  4LQQ B; 
#chains in the Genus database with same CATH homology
 4Q4U A;  4P13 A;  4X28 A;  3SCE A;  3OWM A;  2IX6 A;  1U8V A;  1JQI A;  2FON A;  4OO2 A;  3SXQ A;  1WS9 A;  3D9G A;  3UU9 A;  4N5F A;  2IX5 A;  5K3I A;  2E80 A;  3MPI A;  2J7A A;  3LG1 A;  2PG0 A;  2RF7 A;  3TOR A;  1GU6 A;  2YYK A;  2ZAF A;  2YYL A;  3R7K A;  3D1I A;  3L1T A;  4Q0T A;  3X0Y A;  4W9U A;  2DDH A;  1SIQ A;  1SIR A;  2YYM A;  3RKH A;  1EGC A;  1W07 A;  3D6B A;  4G5E A;  4ZYJ A;  3BNF A;  3OIB A;  3OWA A;  2WBI A;  1R2J A;  4NXL A;  3LGQ A;  1IS2 A;  4HR3 A;  3P4T A;  3MPJ A;  1IVH A;  3PFD A;  4Q5B A;  3BNJ A;  5K3G A;  5K3J A;  3FCJ A;  4XVX A;  3AFF A;  4DOY A;  2JBT A;  3GNC A;  1RX0 A;  2YYG A;  1EGD A;  2JBR A;  4O5M A;  4KCF A;  2CX9 A;  3NF4 A;  3BNH A;  2R0N A;  3SF6 A;  4Q1O A;  3FO3 A;  2A1T A;  1FS8 A;  4IRN A;  4X28 C;  1EGE A;  2YYI A;  2EBA A;  3EON A;  2C12 A;  1UDY A;  3D9D A;  1FS7 A;  3B96 A;  4Q5C A;  1T9G A;  3BNG A;  4IV6 A;  1FS9 A;  2YYJ A;  4L3X A;  4U83 A;  1BUC A;  5K3H A;  2JIF A;  3S7W A;  1UKW A;  3II9 A;  4L38 A;  3D9E A;  2R0M A;  3UBR A;  2REH A;  3EOM A;  1QDB A;  2UXW A;  3SWO A;  4M9A A;  2C0U A;  2DVL A;  3MMO A;  4L3Z A;  3HWC A;  2JBS A;  4RM7 A;  2RFQ A;  4JEK A;  2VR0 A;  3MDE A;  2OR0 A;  3X0X A;  4WJY A;  2VIG A;  2RDZ A;  1OAH A;  3GM6 A;  4Q17 A;  3AFE A;  3D9F A;  2ZO5 A;  3MKH A;  3F29 A;  4L3Y A;  2E81 A;  4KTO A;  3GQT A;  3MXL A;  3TTB A;  2Z1Q A;  4L1F A;  4ZXV A;  3MDD A;  3M9V A;  2OT4 A;  2D29 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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