1BUCA

Three-dimensional structure of butyryl-coa dehydrogenase from megasphaera elsdenii
Total Genus 154
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
154
sequence length
383
structure length
383
Chain Sequence
b'MDFNLTDIQQDFLKLAHDFGEKKLAPTVTERDHKGIYDKELIDELLSLGITGAYFEEKYGGSGDDGGDVLSYILAVEELAKYDAGVAITLSATVSLCANPIWQFGTEAQKEKFLVPLVEGTKLGAFGLTEPNAGTDASGQQTIATKNDDGTYTLNGSKIFITNGGAADIYIVFAMTDKSKGNHGITAFILEDGTPGFTYGKKEDKMGIHTSQTMELVFQDVKVPAENMLGEEGKGFKIAMMTLDGGRIGVAAQALGIAEAALADAVEYSKQRVQFGKPLCKFQSISFKLADMKMQIEAARNLVYKAACKKQEGKPFTVDAAIAKRVASDVAMRVTTEAVQIFGGYGYSEEYPVARHMRDAKITQIYEGTNEVQLMVTGGALLR'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule keywords BUTYRYL-COA DEHYDROGENASE
publication title Three-dimensional structure of butyryl-CoA dehydrogenase from Megasphaera elsdenii.
pubmed doi rcsb
source organism Megasphaera elsdenii
molecule tags Oxidoreductase
total genus 154
structure length 383
sequence length 383
chains with identical sequence B
ec nomenclature ec 1.3.8.1: Short-chain acyl-CoA dehydrogenase.
pdb deposition date 1994-09-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00441 Acyl-CoA_dh_1 Acyl-CoA dehydrogenase, C-terminal domain
A PF02770 Acyl-CoA_dh_M Acyl-CoA dehydrogenase, middle domain
A PF02771 Acyl-CoA_dh_N Acyl-CoA dehydrogenase, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.540.10 Mainly Alpha Orthogonal Bundle Butyryl-Coa Dehydrogenase, subunit A; domain 1 Acyl-CoA dehydrogenase/oxidase, N-terminal domain 1bucA01
1.20.140.10 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A; domain 3 Butyryl-CoA Dehydrogenase, subunit A, domain 3 1bucA03
2.40.110.10 Mainly Beta Beta Barrel Butyryl-CoA Dehydrogenase, subunit A; domain 2 Butyryl-CoA Dehydrogenase, subunit A, domain 2 1bucA02
3MDEA 4NXLA 3EONA 3AFEA 3BNFA 2R0MA 3UBRA 4L3YA 3MDDA 1FS8A 3D1IA 4DOYA 3D9GA 3SF6A 2EBAA 4Q1OA 3TTBA 5K3HA 4G5EA 4JEKA 4Q17A 2R0NA 5K3GA 3X0YA 3X0XA 4WJYA 1EGCA 3MXLA 4HR3A 2YYGA 1BUCA 2RFQA 3OWAA 4X28C 4Q0TA 4U83A 2D29A 1T9GA 3R7KA 3B96A 4P13A 4ZYJA 1R2JA 4W9UA 2DDHA 3GQTA 3NF4A 1JQIA 3GNCA 3D9FA 2JBTA 2YYMA 2DVLA 2C0UA 4KTOA 4XVXA 4L38A 2FONA 3D9EA 3MPJA 3BNHA 3D6BA 3OWMA 3MMOA 2OT4A 3UU9A 2IX6A 1UKWA 1UDYA 2E81A 2RF7A 3EOMA 4IRNA 4Q4UA 3GM6A 3BNGA 4RM7A 3SWOA 3HWCA 3D9DA 4Q5CA 1EGEA 1U8VA 3AFFA 2E80A 2WBIA 3MKHA 3PFDA 2ZO5A 2YYKA 2JBRA 3LGQA 2IX5A 2YYIA 3TORA 2REHA 1QDBA 3LG1A 3SCEA 2C12A 1WS9A 4L3XA 4N5FA 2ZAFA 4IV6A 1W07A 2Z1QA 2YYJA 1OAHA 4KCFA 4X28A 4ZXVA 2VIGA 1EGDA 2A1TA 1SIRA 2RDZA 3FO3A 4M9AA 4Q5BA 1GU6A 2UXWA 3MPIA 3OIBA 2PG0A 3F29A 2JBSA 5K3JA 1RX0A 2J7AA 3SXQA 4L1FA 3L1TA 3M9VA 4O5MA 3II9A 1FS9A 1FS7A 1IS2A 1IVHA 2OR0A 2YYLA 4OO2A 2JIFA 3BNJA 3S7WA 2VR0A 1SIQA 2CX9A 5K3IA 4L3ZA 3RKHA 3P4TA 3FCJA
chains in the Genus database with same CATH superfamily
3MDEA 4E01A 3Q22A 4NXLA 2Q8IA 3EONA 4KSFA 2BTZA 2EBFX 3AFEA 3BNFA 5BRMA 3CRLA 2R0MA 2CJ8A 4LQSB 2YGWA 3UBRA 4L3YA 2F6LA 3MDDA 1Y8PA 2OJQA 4FF4A 1S26A 1FS8A 2R05A 2R02A 3D1IA 2QR4A 4DOYA 4H81A 3D9GA 3SF6A 2EBAA 3Q24A 4Q1OA 3TTBA 3VADA 5K3HA 4G5EA 2FP2A 4JEKA 4JIOA 4G97A 2EC5A 2R0NA 4Q17A 5K3GA 1R3BA 3VKHA 1RP3A 3X0YA 3X0XA 1SC5A 2E0AA 4WJYA 4AKHA 1EGCA 3MXLA 5J71A 4HR3A 1XG2B 2BU5A 2XQRB 2YYGA 1Y0VA 1BUCA 2RFQA 3OWAA 1RJ1A 1K93A 4X28C 2XS1A 2ZDYA 5B5WA 5M4MA 4MP2A 2CJ7A 4Q0TA 4MPCA 4U83A 5J6AA 2D29A 3Q23A 4FF1A 1T9GA 3R7KA 4DZYA 3B96A 4P13A 3X29A 2EBHX 4ZYJA 4HKRA 1R2JA 4W9UA 2DDHA 3GQTA 3NF4A 2R03A 4H7QA 5BRKA 4MPEA 2CJ5A 1JQIA 1XFVA 3GNCA 3D9FA 4H85A 2JBTA 2YYMA 2DVLA 2C0UA 4KTOA 4XVXA 4L38A 2FONA 3D9EA 3MPJA 5B6BA 3BNHA 3D6BA 3OWMA 3MMOA 4V25A 2LFWA 2OEVA 2ZKJA 2OT4A 3UU9A 2IX6A 1UKWA 1UDYA 1X91A 2BU7A 2E81A 1JM6A 2RF7A 3D2RA 1Y8OA 4KSAA 3EOMA 4V26A 4LQQB 1LVCA 3C2PA 4FF2A 4IRNA 4MPNA 4AI6A 4Q4UA 3GM6A 1K8TA 4RM7A 3BNGA 3SWOA 3HWCA 3D9DA 4Q5CA 1EGEA 1U8VA 3AFFA 3KMLA 2Q8GA 5M4PA 2BU2A 2E80A 2Q8HA 4QICA 2WBIA 3TZ0A 3MKHA 4AKGA 3PFDA 2ZO5A 5GJWE 2BU6A 2YYKA 2JBRA 3LGQA 2IX5A 2YYIA 3CRKA 3TORA 3TZ2A 2REHA 1QDBA 3CE2A 2GBBA 4KS9A 3VKGA 2VF1A 3DJLA 4J1VA 3LG1A 2CJ4A 4P79A 5M4NA 3SCEA 3C3LA 2C12A 1WS9A 4L3XA 4N5FA 4AKIA 5EZ3A 2ZAFA 2AO2A 4IV6A 2HJNA 1W07A 2Z1QA 2YYJA 1OAHA 4KCFA 3TZ5A 2ZDXA 1GJVA 4X28A 4E02A 4ZXVA 2VIGA 1EGDA 2A1TA 1SIRA 1XFWA 1XFXA 2RDZA 3FO3A 4HKSA 4M9AA 4Q5BA 1GU6A 1XFYA 2CJ6A 2UXWA 3MPIA 4JIZA 3OIBA 3Q0AA 1GKXA 2PG0A 5M4KA 1K90A 2AZEA 3F29A 2JBSA 5K3JA 1RX0A 2OEXA 2PNRA 5GJVE 2J7AA 3SXQA 4L1FA 3L1TA 4F0XA 3U33A 3M9VA 4O5MA 2FP1A 3II9A 1GKZA 1XFUA 1FS9A 5B5VA 1FS7A 1IS2A 1IVHA 2OR0A 2XS8A 1X90A 3TZ4A 2YYLA 1RJ4A 1PK0A 4OO2A 1X8ZA 2Q8FA 4E00A 2JIFA 1XFZA 1Y8NA 2PO4A 3BNJA 3S7WA 4FZ4A 2VR0A 1SIQA 1SK6A 2CX9A 5K3IA 4L3ZA 4MP7A 2BU8A 3RKHA 3P4TA 3C46A 3N0RA 4FF3A 3FCJA 1PI1A
chains in the Genus database with same CATH topology
3MDEA 4NXLA 3EONA 3AFEA 3BNFA 2R0MA 3UBRA 4L3YA 3MDDA 1FS8A 3D1IA 4DOYA 3D9GA 3SF6A 2EBAA 4Q1OA 3TTBA 5K3HA 4G5EA 4JEKA 4Q17A 2R0NA 5K3GA 3X0YA 3X0XA 4WJYA 1EGCA 3MXLA 4HR3A 2YYGA 1BUCA 2RFQA 3OWAA 4X28C 4Q0TA 4U83A 2D29A 1T9GA 3R7KA 3B96A 4P13A 4ZYJA 1R2JA 4W9UA 2DDHA 3GQTA 3NF4A 1JQIA 3GNCA 3D9FA 2JBTA 2YYMA 2DVLA 2C0UA 4KTOA 4XVXA 4L38A 2FONA 3D9EA 3MPJA 3BNHA 3D6BA 3OWMA 3MMOA 2OT4A 3UU9A 2IX6A 1UKWA 1UDYA 2E81A 2RF7A 3EOMA 4IRNA 4Q4UA 3GM6A 3BNGA 4RM7A 3SWOA 3HWCA 3D9DA 4Q5CA 1EGEA 1U8VA 3AFFA 2E80A 2WBIA 3MKHA 3PFDA 2ZO5A 2YYKA 2JBRA 3LGQA 2IX5A 2YYIA 3TORA 2REHA 1QDBA 3LG1A 3SCEA 2C12A 1WS9A 4L3XA 4N5FA 2ZAFA 4IV6A 1W07A 2Z1QA 2YYJA 1OAHA 4KCFA 4X28A 4ZXVA 2VIGA 1EGDA 2A1TA 1SIRA 2RDZA 3FO3A 4M9AA 4Q5BA 1GU6A 2UXWA 3MPIA 3OIBA 2PG0A 3F29A 2JBSA 5K3JA 1RX0A 2J7AA 3SXQA 4L1FA 3L1TA 3M9VA 4O5MA 3II9A 1FS9A 1FS7A 1IS2A 1IVHA 2OR0A 2YYLA 4OO2A 2JIFA 3BNJA 3S7WA 2VR0A 1SIQA 2CX9A 5K3IA 4L3ZA 3RKHA 3P4TA 3FCJA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3MDE A;  4NXL A;  3EON A;  3AFE A;  3BNF A;  2R0M A;  3UBR A;  4L3Y A;  3MDD A;  1FS8 A;  3D1I A;  4DOY A;  3D9G A;  3SF6 A;  2EBA A;  4Q1O A;  3TTB A;  5K3H A;  4G5E A;  4JEK A;  4Q17 A;  2R0N A;  5K3G A;  3X0Y A;  3X0X A;  4WJY A;  1EGC A;  3MXL A;  4HR3 A;  2YYG A;  1BUC A;  2RFQ A;  3OWA A;  4X28 C;  4Q0T A;  4U83 A;  2D29 A;  1T9G A;  3R7K A;  3B96 A;  4P13 A;  4ZYJ A;  1R2J A;  4W9U A;  2DDH A;  3GQT A;  3NF4 A;  1JQI A;  3GNC A;  3D9F A;  2JBT A;  2YYM A;  2DVL A;  2C0U A;  4KTO A;  4XVX A;  4L38 A;  2FON A;  3D9E A;  3MPJ A;  3BNH A;  3D6B A;  3OWM A;  3MMO A;  2OT4 A;  3UU9 A;  2IX6 A;  1UKW A;  1UDY A;  2E81 A;  2RF7 A;  3EOM A;  4IRN A;  4Q4U A;  3GM6 A;  3BNG A;  4RM7 A;  3SWO A;  3HWC A;  3D9D A;  4Q5C A;  1EGE A;  1U8V A;  3AFF A;  2E80 A;  2WBI A;  3MKH A;  3PFD A;  2ZO5 A;  2YYK A;  2JBR A;  3LGQ A;  2IX5 A;  2YYI A;  3TOR A;  2REH A;  1QDB A;  3LG1 A;  3SCE A;  2C12 A;  1WS9 A;  4L3X A;  4N5F A;  2ZAF A;  4IV6 A;  1W07 A;  2Z1Q A;  2YYJ A;  1OAH A;  4KCF A;  4X28 A;  4ZXV A;  2VIG A;  1EGD A;  2A1T A;  1SIR A;  2RDZ A;  3FO3 A;  4M9A A;  4Q5B A;  1GU6 A;  2UXW A;  3MPI A;  3OIB A;  2PG0 A;  3F29 A;  2JBS A;  5K3J A;  1RX0 A;  2J7A A;  3SXQ A;  4L1F A;  3L1T A;  3M9V A;  4O5M A;  3II9 A;  1FS9 A;  1FS7 A;  1IS2 A;  1IVH A;  2OR0 A;  2YYL A;  4OO2 A;  2JIF A;  3BNJ A;  3S7W A;  2VR0 A;  1SIQ A;  2CX9 A;  5K3I A;  4L3Z A;  3RKH A;  3P4T A;  3FCJ A; 
#chains in the Genus database with same CATH topology
 3MDE A;  4E01 A;  3Q22 A;  4NXL A;  2Q8I A;  3EON A;  4KSF A;  2BTZ A;  2EBF X;  3AFE A;  3BNF A;  5BRM A;  3CRL A;  2R0M A;  2CJ8 A;  4LQS B;  2YGW A;  3UBR A;  4L3Y A;  2F6L A;  3MDD A;  1Y8P A;  2OJQ A;  4FF4 A;  1S26 A;  1FS8 A;  2R05 A;  2R02 A;  3D1I A;  2QR4 A;  4DOY A;  4H81 A;  3D9G A;  3SF6 A;  2EBA A;  3Q24 A;  4Q1O A;  3TTB A;  3VAD A;  5K3H A;  4G5E A;  2FP2 A;  4JEK A;  4JIO A;  4G97 A;  2EC5 A;  2R0N A;  4Q17 A;  5K3G A;  1R3B A;  3VKH A;  1RP3 A;  3X0Y A;  3X0X A;  1SC5 A;  2E0A A;  4WJY A;  4AKH A;  1EGC A;  3MXL A;  5J71 A;  4HR3 A;  1XG2 B;  2BU5 A;  2XQR B;  2YYG A;  1Y0V A;  1BUC A;  2RFQ A;  3OWA A;  1RJ1 A;  1K93 A;  4X28 C;  2XS1 A;  2ZDY A;  5B5W A;  5M4M A;  4MP2 A;  2CJ7 A;  4Q0T A;  4MPC A;  4U83 A;  5J6A A;  2D29 A;  3Q23 A;  4FF1 A;  1T9G A;  3R7K A;  4DZY A;  3B96 A;  4P13 A;  3X29 A;  2EBH X;  4ZYJ A;  4HKR A;  1R2J A;  4W9U A;  2DDH A;  3GQT A;  3NF4 A;  2R03 A;  4H7Q A;  5BRK A;  4MPE A;  2CJ5 A;  1JQI A;  1XFV A;  3GNC A;  3D9F A;  4H85 A;  2JBT A;  2YYM A;  2DVL A;  2C0U A;  4KTO A;  4XVX A;  4L38 A;  2FON A;  3D9E A;  3MPJ A;  5B6B A;  3BNH A;  3D6B A;  3OWM A;  3MMO A;  4V25 A;  2LFW A;  2OEV A;  2ZKJ A;  2OT4 A;  3UU9 A;  2IX6 A;  1UKW A;  1UDY A;  1X91 A;  2BU7 A;  2E81 A;  1JM6 A;  2RF7 A;  3D2R A;  1Y8O A;  4KSA A;  3EOM A;  4V26 A;  4LQQ B;  1LVC A;  3C2P A;  4FF2 A;  4IRN A;  4MPN A;  4AI6 A;  4Q4U A;  3GM6 A;  1K8T A;  4RM7 A;  3BNG A;  3SWO A;  3HWC A;  3D9D A;  4Q5C A;  1EGE A;  1U8V A;  3AFF A;  3KML A;  2Q8G A;  5M4P A;  2BU2 A;  2E80 A;  2Q8H A;  4QIC A;  2WBI A;  3TZ0 A;  3MKH A;  4AKG A;  3PFD A;  2ZO5 A;  5GJW E;  2BU6 A;  2YYK A;  2JBR A;  3LGQ A;  2IX5 A;  2YYI A;  3CRK A;  3TOR A;  3TZ2 A;  2REH A;  1QDB A;  3CE2 A;  2GBB A;  4KS9 A;  3VKG A;  2VF1 A;  3DJL A;  4J1V A;  3LG1 A;  2CJ4 A;  4P79 A;  5M4N A;  3SCE A;  3C3L A;  2C12 A;  1WS9 A;  4L3X A;  4N5F A;  4AKI A;  5EZ3 A;  2ZAF A;  2AO2 A;  4IV6 A;  2HJN A;  1W07 A;  2Z1Q A;  2YYJ A;  1OAH A;  4KCF A;  3TZ5 A;  2ZDX A;  1GJV A;  4X28 A;  4E02 A;  4ZXV A;  2VIG A;  1EGD A;  2A1T A;  1SIR A;  1XFW A;  1XFX A;  2RDZ A;  3FO3 A;  4HKS A;  4M9A A;  4Q5B A;  1GU6 A;  1XFY A;  2CJ6 A;  2UXW A;  3MPI A;  4JIZ A;  3OIB A;  3Q0A A;  1GKX A;  2PG0 A;  5M4K A;  1K90 A;  2AZE A;  3F29 A;  2JBS A;  5K3J A;  1RX0 A;  2OEX A;  2PNR A;  5GJV E;  2J7A A;  3SXQ A;  4L1F A;  3L1T A;  4F0X A;  3U33 A;  3M9V A;  4O5M A;  2FP1 A;  3II9 A;  1GKZ A;  1XFU A;  1FS9 A;  5B5V A;  1FS7 A;  1IS2 A;  1IVH A;  2OR0 A;  2XS8 A;  1X90 A;  3TZ4 A;  2YYL A;  1RJ4 A;  1PK0 A;  4OO2 A;  1X8Z A;  2Q8F A;  4E00 A;  2JIF A;  1XFZ A;  1Y8N A;  2PO4 A;  3BNJ A;  3S7W A;  4FZ4 A;  2VR0 A;  1SIQ A;  1SK6 A;  2CX9 A;  5K3I A;  4L3Z A;  4MP7 A;  2BU8 A;  3RKH A;  3P4T A;  3C46 A;  3N0R A;  4FF3 A;  3FCJ A;  1PI1 A; 
#chains in the Genus database with same CATH homology
 3MDE A;  4NXL A;  3EON A;  3AFE A;  3BNF A;  2R0M A;  3UBR A;  4L3Y A;  3MDD A;  1FS8 A;  3D1I A;  4DOY A;  3D9G A;  3SF6 A;  2EBA A;  4Q1O A;  3TTB A;  5K3H A;  4G5E A;  4JEK A;  4Q17 A;  2R0N A;  5K3G A;  3X0Y A;  3X0X A;  4WJY A;  1EGC A;  3MXL A;  4HR3 A;  2YYG A;  1BUC A;  2RFQ A;  3OWA A;  4X28 C;  4Q0T A;  4U83 A;  2D29 A;  1T9G A;  3R7K A;  3B96 A;  4P13 A;  4ZYJ A;  1R2J A;  4W9U A;  2DDH A;  3GQT A;  3NF4 A;  1JQI A;  3GNC A;  3D9F A;  2JBT A;  2YYM A;  2DVL A;  2C0U A;  4KTO A;  4XVX A;  4L38 A;  2FON A;  3D9E A;  3MPJ A;  3BNH A;  3D6B A;  3OWM A;  3MMO A;  2OT4 A;  3UU9 A;  2IX6 A;  1UKW A;  1UDY A;  2E81 A;  2RF7 A;  3EOM A;  4IRN A;  4Q4U A;  3GM6 A;  3BNG A;  4RM7 A;  3SWO A;  3HWC A;  3D9D A;  4Q5C A;  1EGE A;  1U8V A;  3AFF A;  2E80 A;  2WBI A;  3MKH A;  3PFD A;  2ZO5 A;  2YYK A;  2JBR A;  3LGQ A;  2IX5 A;  2YYI A;  3TOR A;  2REH A;  1QDB A;  3LG1 A;  3SCE A;  2C12 A;  1WS9 A;  4L3X A;  4N5F A;  2ZAF A;  4IV6 A;  1W07 A;  2Z1Q A;  2YYJ A;  1OAH A;  4KCF A;  4X28 A;  4ZXV A;  2VIG A;  1EGD A;  2A1T A;  1SIR A;  2RDZ A;  3FO3 A;  4M9A A;  4Q5B A;  1GU6 A;  2UXW A;  3MPI A;  3OIB A;  2PG0 A;  3F29 A;  2JBS A;  5K3J A;  1RX0 A;  2J7A A;  3SXQ A;  4L1F A;  3L1T A;  3M9V A;  4O5M A;  3II9 A;  1FS9 A;  1FS7 A;  1IS2 A;  1IVH A;  2OR0 A;  2YYL A;  4OO2 A;  2JIF A;  3BNJ A;  3S7W A;  2VR0 A;  1SIQ A;  2CX9 A;  5K3I A;  4L3Z A;  3RKH A;  3P4T A;  3FCJ A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...