1BUCA

Three-dimensional structure of butyryl-coa dehydrogenase from megasphaera elsdenii
Total Genus 154
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
154
sequence length
383
structure length
383
Chain Sequence
MDFNLTDIQQDFLKLAHDFGEKKLAPTVTERDHKGIYDKELIDELLSLGITGAYFEEKYGGSGDDGGDVLSYILAVEELAKYDAGVAITLSATVSLCANPIWQFGTEAQKEKFLVPLVEGTKLGAFGLTEPNAGTDASGQQTIATKNDDGTYTLNGSKIFITNGGAADIYIVFAMTDKSKGNHGITAFILEDGTPGFTYGKKEDKMGIHTSQTMELVFQDVKVPAENMLGEEGKGFKIAMMTLDGGRIGVAAQALGIAEAALADAVEYSKQRVQFGKPLCKFQSISFKLADMKMQIEAARNLVYKAACKKQEGKPFTVDAAIAKRVASDVAMRVTTEAVQIFGGYGYSEEYPVARHMRDAKITQIYEGTNEVQLMVTGGALLR
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords BUTYRYL-COA DEHYDROGENASE
publication title Three-dimensional structure of butyryl-CoA dehydrogenase from Megasphaera elsdenii.
pubmed doi rcsb
source organism Megasphaera elsdenii
molecule tags Oxidoreductase
total genus 154
structure length 383
sequence length 383
chains with identical sequence B
ec nomenclature ec 1.3.8.1: Short-chain acyl-CoA dehydrogenase.
pdb deposition date 1994-09-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00441 Acyl-CoA_dh_1 Acyl-CoA dehydrogenase, C-terminal domain
A PF02770 Acyl-CoA_dh_M Acyl-CoA dehydrogenase, middle domain
A PF02771 Acyl-CoA_dh_N Acyl-CoA dehydrogenase, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.540.10 Mainly Alpha Orthogonal Bundle Butyryl-Coa Dehydrogenase, subunit A; domain 1 Acyl-CoA dehydrogenase/oxidase, N-terminal domain 1bucA01
1.20.140.10 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A; domain 3 Butyryl-CoA Dehydrogenase, subunit A, domain 3 1bucA03
2.40.110.10 Mainly Beta Beta Barrel Butyryl-CoA Dehydrogenase, subunit A; domain 2 Butyryl-CoA Dehydrogenase, subunit A, domain 2 1bucA02
1U8VA 2DVLA 3D9FA 2ZAFA 4DOYA 4IRNA 3BNFA 4L3YA 1IS2A 2C0UA 1UDYA 2JBRA 2Z1QA 4KTOA 3D1IA 1T9GA 1W07A 4Q0TA 2OR0A 1IVHA 3BNHA 3FCJA 3LG1A 5K3IA 3R7KA 2WBIA 4ZYJA 2D29A 3MKHA 4M9AA 4X28A 1JQIA 2JBSA 3D9DA 3P4TA 4P13A 4N5FA 4Q17A 4KCFA 2PG0A 2ZO5A 2CX9A 3PFDA 3MDDA 1EGEA 1SIQA 2R0NA 1OAHA 1EGCA 3LGQA 4JEKA 2E80A 2OT4A 1WS9A 3SF6A 4Q5CA 1BUCA 4Q5BA 4X28C 2E81A 3EONA 4RM7A 3B96A 1EGDA 3II9A 4O5MA 3MMOA 3OWAA 5K3HA 2C12A 2FONA 3OWMA 3MDEA 4L38A 3HWCA 2RF7A 4IV6A 3AFEA 2R0MA 3GM6A 1GU6A 3AFFA 4HR3A 2JBTA 3OIBA 3RKHA 3SXQA 3L1TA 4Q1OA 3BNJA 5K3GA 4L3XA 3X0YA 3TTBA 3D9GA 3MPJA 3BNGA 2YYKA 1UKWA 2VR0A 3UU9A 2IX6A 1QDBA 2IX5A 3MPIA 1SIRA 2DDHA 3TORA 3SWOA 2YYMA 3M9VA 3D6BA 3EOMA 4U83A 4NXLA 4Q4UA 2YYGA 3UBRA 2RFQA 3MXLA 3NF4A 1FS8A 4L3ZA 2A1TA 1FS9A 4G5EA 2YYLA 3SCEA 4ZXVA 5K3JA 2UXWA 2YYJA 3X0XA 3D9EA 3GNCA 3S7WA 4XVXA 2J7AA 2REHA 3F29A 4OO2A 2RDZA 2JIFA 4W9UA 1R2JA 1FS7A 3FO3A 1RX0A 2VIGA 2YYIA 3GQTA 4WJYA 2EBAA 4L1FA
chains in the Genus database with same CATH superfamily
2CJ7A 4MP2A 5BRMA 1U8VA 2DVLA 3D9FA 2R02A 1XFWA 3KMLA 4KSAA 4P79A 2ZAFA 4DOYA 4IRNA 3BNFA 1PK0A 4L3YA 1IS2A 5EZ3A 2C0UA 2FP2A 1SC5A 1UDYA 2JBRA 1RP3A 4AKIA 2Z1QA 4KTOA 3D1IA 1T9GA 1W07A 4Q0TA 2OR0A 1IVHA 1GKZA 3FCJA 3BNHA 5K3IA 3LG1A 3R7KA 3TZ2A 5M4PA 2WBIA 4ZYJA 1X8ZA 1X91A 1JM6A 5GJWE 3C46A 2D29A 3MKHA 4M9AA 4X28A 1JQIA 2JBSA 3D9DA 2OEXA 1K8TA 3P4TA 4P13A 4N5FA 2FP1A 4Q17A 2CJ5A 4KCFA 2PG0A 1LVCA 2ZO5A 4FF4A 2CX9A 1RJ4A 3PFDA 3MDDA 1EGEA 2BU7A 1Y8NA 1SIQA 2R0NA 1Y0VA 3CRLA 1OAHA 1EGCA 2OEVA 4JEKA 2XS8A 2E80A 3LGQA 2OJQA 4FF1A 2CJ6A 2EBHX 4V26A 2OT4A 1WS9A 3SF6A 2ZDYA 4MP7A 1SK6A 1BUCA 4Q5BA 4X28C 2XQRB 2CJ8A 4LQSB 2E81A 4Q5CA 4E00A 4AI6A 3EONA 3X29A 4RM7A 3B96A 4DZYA 1EGDA 2VF1A 3II9A 4O5MA 2ZDXA 2BU8A 2E0AA 3MMOA 3OWAA 2YGWA 4G97A 5K3HA 2BU2A 2C12A 2FONA 3OWMA 4KSFA 3MDEA 2R05A 2XS1A 4L38A 2Q8GA 3TZ5A 3VKGA 3HWCA 4H85A 2EBFX 2RF7A 2PO4A 4JIOA 4IV6A 5B6BA 2LFWA 4FZ4A 4HKRA 5J6AA 3AFEA 2R0MA 3GM6A 2BTZA 4AKGA 1GU6A 3C2PA 3AFFA 1XFYA 4E01A 4HR3A 1XFVA 3C3LA 4FF2A 2JBTA 3OIBA 5GJVE 3RKHA 3SXQA 1K93A 3L1TA 2ZKJA 4HKSA 4JIZA 4Q1OA 3BNJA 5K3GA 4L3XA 2Q8HA 4AKHA 3X0YA 3TTBA 2F6LA 3D9GA 3MPJA 3VKHA 3BNGA 2EC5A 4FF3A 2YYKA 1UKWA 2VR0A 5J71A 1XG2B 4E02A 4QICA 3UU9A 2IX6A 2R03A 1QDBA 1Y8OA 2IX5A 3U33A 3MPIA 3CE2A 1SIRA 3Q22A 2DDHA 3TORA 3SWOA 2AO2A 3Q0AA 2YYMA 1GJVA 3M9VA 3D6BA 3EOMA 1RJ1A 5M4NA 4U83A 2Q8IA 4NXLA 4LQQB 4Q4UA 2YYGA 3UBRA 5M4KA 2RFQA 3MXLA 3NF4A 1FS8A 5M4MA 4H81A 3DJLA 3D2RA 4L3ZA 4MPEA 2A1TA 5B5VA 1FS9A 1R3BA 2YYLA 1X90A 2CJ4A 4G5EA 3CRKA 4H7QA 4J1VA 3SCEA 4ZXVA 5K3JA 1XFZA 2PNRA 2QR4A 2UXWA 2YYJA 3X0XA 3D9EA 3GNCA 1K90A 2GBBA 3S7WA 4XVXA 4MPCA 2J7AA 3TZ4A 2HJNA 2REHA 2Q8FA 4F0XA 1XFXA 5BRKA 5B5WA 4V25A 3F29A 2BU6A 1XFUA 3Q24A 4OO2A 2RDZA 4MPNA 3TZ0A 2BU5A 3Q23A 1S26A 3N0RA 2JIFA 4W9UA 1R2JA 1FS7A 1Y8PA 2AZEA 1PI1A 1GKXA 3FO3A 1RX0A 4KS9A 2VIGA 2YYIA 3GQTA 4WJYA 2EBAA 4L1FA 3VADA
chains in the Genus database with same CATH topology
1U8VA 2DVLA 3D9FA 2ZAFA 4DOYA 4IRNA 3BNFA 4L3YA 1IS2A 2C0UA 1UDYA 2JBRA 2Z1QA 4KTOA 3D1IA 1T9GA 1W07A 4Q0TA 2OR0A 1IVHA 3BNHA 3FCJA 3LG1A 5K3IA 3R7KA 2WBIA 4ZYJA 2D29A 3MKHA 4M9AA 4X28A 1JQIA 2JBSA 3D9DA 3P4TA 4P13A 4N5FA 4Q17A 4KCFA 2PG0A 2ZO5A 2CX9A 3PFDA 3MDDA 1EGEA 1SIQA 2R0NA 1OAHA 1EGCA 3LGQA 4JEKA 2E80A 2OT4A 1WS9A 3SF6A 4Q5CA 1BUCA 4Q5BA 4X28C 2E81A 3EONA 4RM7A 3B96A 1EGDA 3II9A 4O5MA 3MMOA 3OWAA 5K3HA 2C12A 2FONA 3OWMA 3MDEA 4L38A 3HWCA 2RF7A 4IV6A 3AFEA 2R0MA 3GM6A 1GU6A 3AFFA 4HR3A 2JBTA 3OIBA 3RKHA 3SXQA 3L1TA 4Q1OA 3BNJA 5K3GA 4L3XA 3X0YA 3TTBA 3D9GA 3MPJA 3BNGA 2YYKA 1UKWA 2VR0A 3UU9A 2IX6A 1QDBA 2IX5A 3MPIA 1SIRA 2DDHA 3TORA 3SWOA 2YYMA 3M9VA 3D6BA 3EOMA 4U83A 4NXLA 4Q4UA 2YYGA 3UBRA 2RFQA 3MXLA 3NF4A 1FS8A 4L3ZA 2A1TA 1FS9A 4G5EA 2YYLA 3SCEA 4ZXVA 5K3JA 2UXWA 2YYJA 3X0XA 3D9EA 3GNCA 3S7WA 4XVXA 2J7AA 2REHA 3F29A 4OO2A 2RDZA 2JIFA 4W9UA 1R2JA 1FS7A 3FO3A 1RX0A 2VIGA 2YYIA 3GQTA 4WJYA 2EBAA 4L1FA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1U8V A;  2DVL A;  3D9F A;  2ZAF A;  4DOY A;  4IRN A;  3BNF A;  4L3Y A;  1IS2 A;  2C0U A;  1UDY A;  2JBR A;  2Z1Q A;  4KTO A;  3D1I A;  1T9G A;  1W07 A;  4Q0T A;  2OR0 A;  1IVH A;  3BNH A;  3FCJ A;  3LG1 A;  5K3I A;  3R7K A;  2WBI A;  4ZYJ A;  2D29 A;  3MKH A;  4M9A A;  4X28 A;  1JQI A;  2JBS A;  3D9D A;  3P4T A;  4P13 A;  4N5F A;  4Q17 A;  4KCF A;  2PG0 A;  2ZO5 A;  2CX9 A;  3PFD A;  3MDD A;  1EGE A;  1SIQ A;  2R0N A;  1OAH A;  1EGC A;  3LGQ A;  4JEK A;  2E80 A;  2OT4 A;  1WS9 A;  3SF6 A;  4Q5C A;  1BUC A;  4Q5B A;  4X28 C;  2E81 A;  3EON A;  4RM7 A;  3B96 A;  1EGD A;  3II9 A;  4O5M A;  3MMO A;  3OWA A;  5K3H A;  2C12 A;  2FON A;  3OWM A;  3MDE A;  4L38 A;  3HWC A;  2RF7 A;  4IV6 A;  3AFE A;  2R0M A;  3GM6 A;  1GU6 A;  3AFF A;  4HR3 A;  2JBT A;  3OIB A;  3RKH A;  3SXQ A;  3L1T A;  4Q1O A;  3BNJ A;  5K3G A;  4L3X A;  3X0Y A;  3TTB A;  3D9G A;  3MPJ A;  3BNG A;  2YYK A;  1UKW A;  2VR0 A;  3UU9 A;  2IX6 A;  1QDB A;  2IX5 A;  3MPI A;  1SIR A;  2DDH A;  3TOR A;  3SWO A;  2YYM A;  3M9V A;  3D6B A;  3EOM A;  4U83 A;  4NXL A;  4Q4U A;  2YYG A;  3UBR A;  2RFQ A;  3MXL A;  3NF4 A;  1FS8 A;  4L3Z A;  2A1T A;  1FS9 A;  4G5E A;  2YYL A;  3SCE A;  4ZXV A;  5K3J A;  2UXW A;  2YYJ A;  3X0X A;  3D9E A;  3GNC A;  3S7W A;  4XVX A;  2J7A A;  2REH A;  3F29 A;  4OO2 A;  2RDZ A;  2JIF A;  4W9U A;  1R2J A;  1FS7 A;  3FO3 A;  1RX0 A;  2VIG A;  2YYI A;  3GQT A;  4WJY A;  2EBA A;  4L1F A; 
#chains in the Genus database with same CATH topology
 2CJ7 A;  4MP2 A;  5BRM A;  1U8V A;  2DVL A;  3D9F A;  2R02 A;  1XFW A;  3KML A;  4KSA A;  4P79 A;  2ZAF A;  4DOY A;  4IRN A;  3BNF A;  1PK0 A;  4L3Y A;  1IS2 A;  5EZ3 A;  2C0U A;  2FP2 A;  1SC5 A;  1UDY A;  2JBR A;  1RP3 A;  4AKI A;  2Z1Q A;  4KTO A;  3D1I A;  1T9G A;  1W07 A;  4Q0T A;  2OR0 A;  1IVH A;  1GKZ A;  3FCJ A;  3BNH A;  5K3I A;  3LG1 A;  3R7K A;  3TZ2 A;  5M4P A;  2WBI A;  4ZYJ A;  1X8Z A;  1X91 A;  1JM6 A;  5GJW E;  3C46 A;  2D29 A;  3MKH A;  4M9A A;  4X28 A;  1JQI A;  2JBS A;  3D9D A;  2OEX A;  1K8T A;  3P4T A;  4P13 A;  4N5F A;  2FP1 A;  4Q17 A;  2CJ5 A;  4KCF A;  2PG0 A;  1LVC A;  2ZO5 A;  4FF4 A;  2CX9 A;  1RJ4 A;  3PFD A;  3MDD A;  1EGE A;  2BU7 A;  1Y8N A;  1SIQ A;  2R0N A;  1Y0V A;  3CRL A;  1OAH A;  1EGC A;  2OEV A;  4JEK A;  2XS8 A;  2E80 A;  3LGQ A;  2OJQ A;  4FF1 A;  2CJ6 A;  2EBH X;  4V26 A;  2OT4 A;  1WS9 A;  3SF6 A;  2ZDY A;  4MP7 A;  1SK6 A;  1BUC A;  4Q5B A;  4X28 C;  2XQR B;  2CJ8 A;  4LQS B;  2E81 A;  4Q5C A;  4E00 A;  4AI6 A;  3EON A;  3X29 A;  4RM7 A;  3B96 A;  4DZY A;  1EGD A;  2VF1 A;  3II9 A;  4O5M A;  2ZDX A;  2BU8 A;  2E0A A;  3MMO A;  3OWA A;  2YGW A;  4G97 A;  5K3H A;  2BU2 A;  2C12 A;  2FON A;  3OWM A;  4KSF A;  3MDE A;  2R05 A;  2XS1 A;  4L38 A;  2Q8G A;  3TZ5 A;  3VKG A;  3HWC A;  4H85 A;  2EBF X;  2RF7 A;  2PO4 A;  4JIO A;  4IV6 A;  5B6B A;  2LFW A;  4FZ4 A;  4HKR A;  5J6A A;  3AFE A;  2R0M A;  3GM6 A;  2BTZ A;  4AKG A;  1GU6 A;  3C2P A;  3AFF A;  1XFY A;  4E01 A;  4HR3 A;  1XFV A;  3C3L A;  4FF2 A;  2JBT A;  3OIB A;  5GJV E;  3RKH A;  3SXQ A;  1K93 A;  3L1T A;  2ZKJ A;  4HKS A;  4JIZ A;  4Q1O A;  3BNJ A;  5K3G A;  4L3X A;  2Q8H A;  4AKH A;  3X0Y A;  3TTB A;  2F6L A;  3D9G A;  3MPJ A;  3VKH A;  3BNG A;  2EC5 A;  4FF3 A;  2YYK A;  1UKW A;  2VR0 A;  5J71 A;  1XG2 B;  4E02 A;  4QIC A;  3UU9 A;  2IX6 A;  2R03 A;  1QDB A;  1Y8O A;  2IX5 A;  3U33 A;  3MPI A;  3CE2 A;  1SIR A;  3Q22 A;  2DDH A;  3TOR A;  3SWO A;  2AO2 A;  3Q0A A;  2YYM A;  1GJV A;  3M9V A;  3D6B A;  3EOM A;  1RJ1 A;  5M4N A;  4U83 A;  2Q8I A;  4NXL A;  4LQQ B;  4Q4U A;  2YYG A;  3UBR A;  5M4K A;  2RFQ A;  3MXL A;  3NF4 A;  1FS8 A;  5M4M A;  4H81 A;  3DJL A;  3D2R A;  4L3Z A;  4MPE A;  2A1T A;  5B5V A;  1FS9 A;  1R3B A;  2YYL A;  1X90 A;  2CJ4 A;  4G5E A;  3CRK A;  4H7Q A;  4J1V A;  3SCE A;  4ZXV A;  5K3J A;  1XFZ A;  2PNR A;  2QR4 A;  2UXW A;  2YYJ A;  3X0X A;  3D9E A;  3GNC A;  1K90 A;  2GBB A;  3S7W A;  4XVX A;  4MPC A;  2J7A A;  3TZ4 A;  2HJN A;  2REH A;  2Q8F A;  4F0X A;  1XFX A;  5BRK A;  5B5W A;  4V25 A;  3F29 A;  2BU6 A;  1XFU A;  3Q24 A;  4OO2 A;  2RDZ A;  4MPN A;  3TZ0 A;  2BU5 A;  3Q23 A;  1S26 A;  3N0R A;  2JIF A;  4W9U A;  1R2J A;  1FS7 A;  1Y8P A;  2AZE A;  1PI1 A;  1GKX A;  3FO3 A;  1RX0 A;  4KS9 A;  2VIG A;  2YYI A;  3GQT A;  4WJY A;  2EBA A;  4L1F A;  3VAD A; 
#chains in the Genus database with same CATH homology
 1U8V A;  2DVL A;  3D9F A;  2ZAF A;  4DOY A;  4IRN A;  3BNF A;  4L3Y A;  1IS2 A;  2C0U A;  1UDY A;  2JBR A;  2Z1Q A;  4KTO A;  3D1I A;  1T9G A;  1W07 A;  4Q0T A;  2OR0 A;  1IVH A;  3BNH A;  3FCJ A;  3LG1 A;  5K3I A;  3R7K A;  2WBI A;  4ZYJ A;  2D29 A;  3MKH A;  4M9A A;  4X28 A;  1JQI A;  2JBS A;  3D9D A;  3P4T A;  4P13 A;  4N5F A;  4Q17 A;  4KCF A;  2PG0 A;  2ZO5 A;  2CX9 A;  3PFD A;  3MDD A;  1EGE A;  1SIQ A;  2R0N A;  1OAH A;  1EGC A;  3LGQ A;  4JEK A;  2E80 A;  2OT4 A;  1WS9 A;  3SF6 A;  4Q5C A;  1BUC A;  4Q5B A;  4X28 C;  2E81 A;  3EON A;  4RM7 A;  3B96 A;  1EGD A;  3II9 A;  4O5M A;  3MMO A;  3OWA A;  5K3H A;  2C12 A;  2FON A;  3OWM A;  3MDE A;  4L38 A;  3HWC A;  2RF7 A;  4IV6 A;  3AFE A;  2R0M A;  3GM6 A;  1GU6 A;  3AFF A;  4HR3 A;  2JBT A;  3OIB A;  3RKH A;  3SXQ A;  3L1T A;  4Q1O A;  3BNJ A;  5K3G A;  4L3X A;  3X0Y A;  3TTB A;  3D9G A;  3MPJ A;  3BNG A;  2YYK A;  1UKW A;  2VR0 A;  3UU9 A;  2IX6 A;  1QDB A;  2IX5 A;  3MPI A;  1SIR A;  2DDH A;  3TOR A;  3SWO A;  2YYM A;  3M9V A;  3D6B A;  3EOM A;  4U83 A;  4NXL A;  4Q4U A;  2YYG A;  3UBR A;  2RFQ A;  3MXL A;  3NF4 A;  1FS8 A;  4L3Z A;  2A1T A;  1FS9 A;  4G5E A;  2YYL A;  3SCE A;  4ZXV A;  5K3J A;  2UXW A;  2YYJ A;  3X0X A;  3D9E A;  3GNC A;  3S7W A;  4XVX A;  2J7A A;  2REH A;  3F29 A;  4OO2 A;  2RDZ A;  2JIF A;  4W9U A;  1R2J A;  1FS7 A;  3FO3 A;  1RX0 A;  2VIG A;  2YYI A;  3GQT A;  4WJY A;  2EBA A;  4L1F A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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