1BUCA

Three-dimensional structure of butyryl-coa dehydrogenase from megasphaera elsdenii
Total Genus 154
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
154
sequence length
383
structure length
383
Chain Sequence
MDFNLTDIQQDFLKLAHDFGEKKLAPTVTERDHKGIYDKELIDELLSLGITGAYFEEKYGGSGDDGGDVLSYILAVEELAKYDAGVAITLSATVSLCANPIWQFGTEAQKEKFLVPLVEGTKLGAFGLTEPNAGTDASGQQTIATKNDDGTYTLNGSKIFITNGGAADIYIVFAMTDKSKGNHGITAFILEDGTPGFTYGKKEDKMGIHTSQTMELVFQDVKVPAENMLGEEGKGFKIAMMTLDGGRIGVAAQALGIAEAALADAVEYSKQRVQFGKPLCKFQSISFKLADMKMQIEAARNLVYKAACKKQEGKPFTVDAAIAKRVASDVAMRVTTEAVQIFGGYGYSEEYPVARHMRDAKITQIYEGTNEVQLMVTGGALLR
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
source organism Megasphaera elsdenii
publication title Three-dimensional structure of butyryl-CoA dehydrogenase from Megasphaera elsdenii.
pubmed doi rcsb
molecule keywords BUTYRYL-COA DEHYDROGENASE
total genus 154
structure length 383
sequence length 383
chains with identical sequence B
ec nomenclature ec 1.3.8.1: Short-chain acyl-CoA dehydrogenase.
pdb deposition date 1994-09-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00441 Acyl-CoA_dh_1 Acyl-CoA dehydrogenase, C-terminal domain
A PF02770 Acyl-CoA_dh_M Acyl-CoA dehydrogenase, middle domain
A PF02771 Acyl-CoA_dh_N Acyl-CoA dehydrogenase, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.540.10 Mainly Alpha Orthogonal Bundle Butyryl-Coa Dehydrogenase, subunit A; domain 1 Acyl-CoA dehydrogenase/oxidase, N-terminal domain 1bucA01
1.20.140.10 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A; domain 3 Butyryl-CoA Dehydrogenase, subunit A, domain 3 1bucA03
2.40.110.10 Mainly Beta Beta Barrel Butyryl-CoA Dehydrogenase, subunit A; domain 2 Butyryl-CoA Dehydrogenase, subunit A, domain 2 1bucA02
3D9EA 4NXLA 3BNJA 4W9UA 3UBRA 3BNFA 1EGCA 1FS7A 4HR3A 3P4TA 4L38A 3M9VA 4Q4UA 4ZYJA 1FS8A 2IX6A 1IS2A 3NF4A 1UKWA 3LGQA 3BNGA 4IV6A 3B96A 3OIBA 2RFQA 4ZXVA 1SIQA 3FO3A 2YYKA 3L1TA 2E80A 3RKHA 2VIGA 4DOYA 1U8VA 3AFEA 4RM7A 3PFDA 2JIFA 1UDYA 2YYMA 2YYGA 2PG0A 3S7WA 4L3XA 4P13A 3MMOA 5K3IA 4G5EA 3MPIA 2R0MA 1RX0A 4Q5CA 4XVXA 2UXWA 4M9AA 2IX5A 2J7AA 3F29A 4OO2A 1JQIA 3UU9A 3D9FA 3GQTA 3MDDA 2FONA 4U83A 1FS9A 2D29A 2DDHA 4JEKA 3X0YA 3SXQA 1EGEA 3D1IA 4L3ZA 2RF7A 4X28C 2YYLA 1T9GA 4L1FA 2Z1QA 2EBAA 4X28A 3GNCA 3MPJA 1EGDA 2YYIA 2E81A 2A1TA 2JBTA 5K3HA 3MXLA 2C0UA 4KCFA 4N5FA 2ZAFA 2OT4A 3BNHA 2RDZA 5K3GA 1R2JA 5K3JA 1QDBA 4Q1OA 3EOMA 3OWAA 3R7KA 3TTBA 3MKHA 2OR0A 4WJYA 2JBRA 3OWMA 3D9GA 2R0NA 4KTOA 2YYJA 4Q0TA 3SCEA 3X0XA 3AFFA 3EONA 2VR0A 4L3YA 2C12A 1BUCA 4IRNA 4Q17A 3MDEA 3LG1A 3TORA 1WS9A 2DVLA 2JBSA 1IVHA 1W07A 2WBIA 2REHA 3FCJA 3SWOA 1GU6A 3GM6A 3II9A 4O5MA 4Q5BA 3D9DA 2CX9A 3SF6A 1OAHA 1SIRA 3D6BA 2ZO5A 3HWCA
chains in the Genus database with same CATH superfamily
5BRMA 4FF4A 4H81A 2CJ5A 1PI1A 4F0XA 3Q24A 2LFWA 3D9EA 4NXLA 1K8TA 2AO2A 4MPNA 3BNJA 3Q23A 4W9UA 2QR4A 3UBRA 3BNFA 4KSAA 3VADA 1EGCA 2CJ4A 1FS7A 5M4MA 2BU6A 4HR3A 4V26A 3P4TA 2EBFX 1XFVA 3M9VA 1GKZA 4KS9A 4L38A 2BU2A 4ZYJA 1FS8A 4Q4UA 4KSFA 2IX6A 2Q8HA 1IS2A 2OEXA 5B5VA 3NF4A 1UKWA 3LGQA 3BNGA 3TZ0A 4IV6A 4JIOA 5BRKA 1X8ZA 3B96A 3OIBA 2RFQA 2R03A 4ZXVA 3TZ5A 1K90A 1S26A 2E0AA 1SIQA 1XFZA 3FO3A 1Y0VA 2GBBA 2YYKA 2Q8GA 3L1TA 2HJNA 2E80A 3RKHA 2Q8FA 2VIGA 4DOYA 1U8VA 1Y8PA 3Q0AA 3AFEA 4RM7A 3KMLA 3PFDA 2VF1A 2JIFA 4LQQB 1UDYA 2YYMA 2XQRB 2PG0A 2YYGA 3S7WA 4L3XA 5M4KA 4P13A 3MMOA 5K3IA 3Q22A 1X90A 4G5EA 2R02A 3MPIA 2R0MA 2Q8IA 5B5WA 3CRKA 1RX0A 4Q5CA 4XVXA 2UXWA 4M9AA 2IX5A 1XFUA 4E01A 1SK6A 2J7AA 4FF2A 4AKGA 2PNRA 3F29A 4OO2A 1JQIA 4FF1A 3UU9A 3D9FA 4MPCA 1GKXA 3GQTA 3MDDA 2CJ8A 3DJLA 5J6AA 2FONA 4U83A 3VKHA 1FS9A 2D29A 2DDHA 1SC5A 3CRLA 4HKRA 4JEKA 3X0YA 4MP2A 3SXQA 1EGEA 3D1IA 4JIZA 2ZDXA 4AI6A 5EZ3A 4L3ZA 3VKGA 2RF7A 1XFWA 1X91A 4X28C 1XFXA 2BU8A 2YYLA 1T9GA 4L1FA 2CJ7A 2Z1QA 1R3BA 5B6BA 1XG2B 4HKSA 2EBAA 1GJVA 4X28A 3D2RA 4V25A 4FF3A 3GNCA 3MPJA 1EGDA 1XFYA 2YYIA 2BU5A 2A1TA 2E81A 2XS8A 3TZ4A 2JBTA 5K3HA 4FZ4A 5M4PA 4E00A 3MXLA 2C0UA 4KCFA 4N5FA 2ZAFA 2OJQA 3BNHA 2OEVA 2RDZA 4J1VA 5K3GA 4MPEA 2AZEA 1R2JA 5K3JA 5M4NA 1QDBA 4Q1OA 3EOMA 3OWAA 3R7KA 3TTBA 3MKHA 2OR0A 4WJYA 2EC5A 2JBRA 3OWMA 5J71A 2CJ6A 4H85A 4LQSB 4G97A 3TZ2A 3D9GA 3CE2A 2R0NA 4KTOA 4E02A 2YYJA 2PO4A 3C2PA 4Q0TA 3SCEA 3X0XA 2EBHX 1LVCA 3AFFA 3EONA 2VR0A 4L3YA 4P79A 2C12A 1BUCA 3N0RA 4AKIA 4IRNA 4Q17A 2BU7A 3MDEA 3LG1A 2R05A 1JM6A 3TORA 4AKHA 1RJ1A 4MP7A 1WS9A 2DVLA 2JBSA 4DZYA 1IVHA 1PK0A 1RJ4A 1W07A 2WBIA 2REHA 3FCJA 2FP2A 5GJWE 3C46A 3SWOA 5GJVE 2OT4A 3U33A 2ZDYA 1RP3A 2YGWA 1GU6A 3GM6A 4H7QA 4QICA 1Y8NA 2XS1A 3C3LA 2BTZA 3II9A 4O5MA 4Q5BA 3D9DA 2CX9A 3SF6A 1OAHA 1Y8OA 2F6LA 2ZKJA 3X29A 1SIRA 3D6BA 2FP1A 2ZO5A 1K93A 3HWCA
chains in the Genus database with same CATH topology
3D9EA 4NXLA 3BNJA 4W9UA 3UBRA 3BNFA 1EGCA 1FS7A 4HR3A 3P4TA 4L38A 3M9VA 4Q4UA 4ZYJA 1FS8A 2IX6A 1IS2A 3NF4A 1UKWA 3LGQA 3BNGA 4IV6A 3B96A 3OIBA 2RFQA 4ZXVA 1SIQA 3FO3A 2YYKA 3L1TA 2E80A 3RKHA 2VIGA 4DOYA 1U8VA 3AFEA 4RM7A 3PFDA 2JIFA 1UDYA 2YYMA 2YYGA 2PG0A 3S7WA 4L3XA 4P13A 3MMOA 5K3IA 4G5EA 3MPIA 2R0MA 1RX0A 4Q5CA 4XVXA 2UXWA 4M9AA 2IX5A 2J7AA 3F29A 4OO2A 1JQIA 3UU9A 3D9FA 3GQTA 3MDDA 2FONA 4U83A 1FS9A 2D29A 2DDHA 4JEKA 3X0YA 3SXQA 1EGEA 3D1IA 4L3ZA 2RF7A 4X28C 2YYLA 1T9GA 4L1FA 2Z1QA 2EBAA 4X28A 3GNCA 3MPJA 1EGDA 2YYIA 2E81A 2A1TA 2JBTA 5K3HA 3MXLA 2C0UA 4KCFA 4N5FA 2ZAFA 2OT4A 3BNHA 2RDZA 5K3GA 1R2JA 5K3JA 1QDBA 4Q1OA 3EOMA 3OWAA 3R7KA 3TTBA 3MKHA 2OR0A 4WJYA 2JBRA 3OWMA 3D9GA 2R0NA 4KTOA 2YYJA 4Q0TA 3SCEA 3X0XA 3AFFA 3EONA 2VR0A 4L3YA 2C12A 1BUCA 4IRNA 4Q17A 3MDEA 3LG1A 3TORA 1WS9A 2DVLA 2JBSA 1IVHA 1W07A 2WBIA 2REHA 3FCJA 3SWOA 1GU6A 3GM6A 3II9A 4O5MA 4Q5BA 3D9DA 2CX9A 3SF6A 1OAHA 1SIRA 3D6BA 2ZO5A 3HWCA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3D9E A;  4NXL A;  3BNJ A;  4W9U A;  3UBR A;  3BNF A;  1EGC A;  1FS7 A;  4HR3 A;  3P4T A;  4L38 A;  3M9V A;  4Q4U A;  4ZYJ A;  1FS8 A;  2IX6 A;  1IS2 A;  3NF4 A;  1UKW A;  3LGQ A;  3BNG A;  4IV6 A;  3B96 A;  3OIB A;  2RFQ A;  4ZXV A;  1SIQ A;  3FO3 A;  2YYK A;  3L1T A;  2E80 A;  3RKH A;  2VIG A;  4DOY A;  1U8V A;  3AFE A;  4RM7 A;  3PFD A;  2JIF A;  1UDY A;  2YYM A;  2YYG A;  2PG0 A;  3S7W A;  4L3X A;  4P13 A;  3MMO A;  5K3I A;  4G5E A;  3MPI A;  2R0M A;  1RX0 A;  4Q5C A;  4XVX A;  2UXW A;  4M9A A;  2IX5 A;  2J7A A;  3F29 A;  4OO2 A;  1JQI A;  3UU9 A;  3D9F A;  3GQT A;  3MDD A;  2FON A;  4U83 A;  1FS9 A;  2D29 A;  2DDH A;  4JEK A;  3X0Y A;  3SXQ A;  1EGE A;  3D1I A;  4L3Z A;  2RF7 A;  4X28 C;  2YYL A;  1T9G A;  4L1F A;  2Z1Q A;  2EBA A;  4X28 A;  3GNC A;  3MPJ A;  1EGD A;  2YYI A;  2E81 A;  2A1T A;  2JBT A;  5K3H A;  3MXL A;  2C0U A;  4KCF A;  4N5F A;  2ZAF A;  2OT4 A;  3BNH A;  2RDZ A;  5K3G A;  1R2J A;  5K3J A;  1QDB A;  4Q1O A;  3EOM A;  3OWA A;  3R7K A;  3TTB A;  3MKH A;  2OR0 A;  4WJY A;  2JBR A;  3OWM A;  3D9G A;  2R0N A;  4KTO A;  2YYJ A;  4Q0T A;  3SCE A;  3X0X A;  3AFF A;  3EON A;  2VR0 A;  4L3Y A;  2C12 A;  1BUC A;  4IRN A;  4Q17 A;  3MDE A;  3LG1 A;  3TOR A;  1WS9 A;  2DVL A;  2JBS A;  1IVH A;  1W07 A;  2WBI A;  2REH A;  3FCJ A;  3SWO A;  1GU6 A;  3GM6 A;  3II9 A;  4O5M A;  4Q5B A;  3D9D A;  2CX9 A;  3SF6 A;  1OAH A;  1SIR A;  3D6B A;  2ZO5 A;  3HWC A; 
#chains in the Genus database with same CATH topology
 5BRM A;  4FF4 A;  4H81 A;  2CJ5 A;  1PI1 A;  4F0X A;  3Q24 A;  2LFW A;  3D9E A;  4NXL A;  1K8T A;  2AO2 A;  4MPN A;  3BNJ A;  3Q23 A;  4W9U A;  2QR4 A;  3UBR A;  3BNF A;  4KSA A;  3VAD A;  1EGC A;  2CJ4 A;  1FS7 A;  5M4M A;  2BU6 A;  4HR3 A;  4V26 A;  3P4T A;  2EBF X;  1XFV A;  3M9V A;  1GKZ A;  4KS9 A;  4L38 A;  2BU2 A;  4ZYJ A;  1FS8 A;  4Q4U A;  4KSF A;  2IX6 A;  2Q8H A;  1IS2 A;  2OEX A;  5B5V A;  3NF4 A;  1UKW A;  3LGQ A;  3BNG A;  3TZ0 A;  4IV6 A;  4JIO A;  5BRK A;  1X8Z A;  3B96 A;  3OIB A;  2RFQ A;  2R03 A;  4ZXV A;  3TZ5 A;  1K90 A;  1S26 A;  2E0A A;  1SIQ A;  1XFZ A;  3FO3 A;  1Y0V A;  2GBB A;  2YYK A;  2Q8G A;  3L1T A;  2HJN A;  2E80 A;  3RKH A;  2Q8F A;  2VIG A;  4DOY A;  1U8V A;  1Y8P A;  3Q0A A;  3AFE A;  4RM7 A;  3KML A;  3PFD A;  2VF1 A;  2JIF A;  4LQQ B;  1UDY A;  2YYM A;  2XQR B;  2PG0 A;  2YYG A;  3S7W A;  4L3X A;  5M4K A;  4P13 A;  3MMO A;  5K3I A;  3Q22 A;  1X90 A;  4G5E A;  2R02 A;  3MPI A;  2R0M A;  2Q8I A;  5B5W A;  3CRK A;  1RX0 A;  4Q5C A;  4XVX A;  2UXW A;  4M9A A;  2IX5 A;  1XFU A;  4E01 A;  1SK6 A;  2J7A A;  4FF2 A;  4AKG A;  2PNR A;  3F29 A;  4OO2 A;  1JQI A;  4FF1 A;  3UU9 A;  3D9F A;  4MPC A;  1GKX A;  3GQT A;  3MDD A;  2CJ8 A;  3DJL A;  5J6A A;  2FON A;  4U83 A;  3VKH A;  1FS9 A;  2D29 A;  2DDH A;  1SC5 A;  3CRL A;  4HKR A;  4JEK A;  3X0Y A;  4MP2 A;  3SXQ A;  1EGE A;  3D1I A;  4JIZ A;  2ZDX A;  4AI6 A;  5EZ3 A;  4L3Z A;  3VKG A;  2RF7 A;  1XFW A;  1X91 A;  4X28 C;  1XFX A;  2BU8 A;  2YYL A;  1T9G A;  4L1F A;  2CJ7 A;  2Z1Q A;  1R3B A;  5B6B A;  1XG2 B;  4HKS A;  2EBA A;  1GJV A;  4X28 A;  3D2R A;  4V25 A;  4FF3 A;  3GNC A;  3MPJ A;  1EGD A;  1XFY A;  2YYI A;  2BU5 A;  2A1T A;  2E81 A;  2XS8 A;  3TZ4 A;  2JBT A;  5K3H A;  4FZ4 A;  5M4P A;  4E00 A;  3MXL A;  2C0U A;  4KCF A;  4N5F A;  2ZAF A;  2OJQ A;  3BNH A;  2OEV A;  2RDZ A;  4J1V A;  5K3G A;  4MPE A;  2AZE A;  1R2J A;  5K3J A;  5M4N A;  1QDB A;  4Q1O A;  3EOM A;  3OWA A;  3R7K A;  3TTB A;  3MKH A;  2OR0 A;  4WJY A;  2EC5 A;  2JBR A;  3OWM A;  5J71 A;  2CJ6 A;  4H85 A;  4LQS B;  4G97 A;  3TZ2 A;  3D9G A;  3CE2 A;  2R0N A;  4KTO A;  4E02 A;  2YYJ A;  2PO4 A;  3C2P A;  4Q0T A;  3SCE A;  3X0X A;  2EBH X;  1LVC A;  3AFF A;  3EON A;  2VR0 A;  4L3Y A;  4P79 A;  2C12 A;  1BUC A;  3N0R A;  4AKI A;  4IRN A;  4Q17 A;  2BU7 A;  3MDE A;  3LG1 A;  2R05 A;  1JM6 A;  3TOR A;  4AKH A;  1RJ1 A;  4MP7 A;  1WS9 A;  2DVL A;  2JBS A;  4DZY A;  1IVH A;  1PK0 A;  1RJ4 A;  1W07 A;  2WBI A;  2REH A;  3FCJ A;  2FP2 A;  5GJW E;  3C46 A;  3SWO A;  5GJV E;  2OT4 A;  3U33 A;  2ZDY A;  1RP3 A;  2YGW A;  1GU6 A;  3GM6 A;  4H7Q A;  4QIC A;  1Y8N A;  2XS1 A;  3C3L A;  2BTZ A;  3II9 A;  4O5M A;  4Q5B A;  3D9D A;  2CX9 A;  3SF6 A;  1OAH A;  1Y8O A;  2F6L A;  2ZKJ A;  3X29 A;  1SIR A;  3D6B A;  2FP1 A;  2ZO5 A;  1K93 A;  3HWC A; 
#chains in the Genus database with same CATH homology
 3D9E A;  4NXL A;  3BNJ A;  4W9U A;  3UBR A;  3BNF A;  1EGC A;  1FS7 A;  4HR3 A;  3P4T A;  4L38 A;  3M9V A;  4Q4U A;  4ZYJ A;  1FS8 A;  2IX6 A;  1IS2 A;  3NF4 A;  1UKW A;  3LGQ A;  3BNG A;  4IV6 A;  3B96 A;  3OIB A;  2RFQ A;  4ZXV A;  1SIQ A;  3FO3 A;  2YYK A;  3L1T A;  2E80 A;  3RKH A;  2VIG A;  4DOY A;  1U8V A;  3AFE A;  4RM7 A;  3PFD A;  2JIF A;  1UDY A;  2YYM A;  2YYG A;  2PG0 A;  3S7W A;  4L3X A;  4P13 A;  3MMO A;  5K3I A;  4G5E A;  3MPI A;  2R0M A;  1RX0 A;  4Q5C A;  4XVX A;  2UXW A;  4M9A A;  2IX5 A;  2J7A A;  3F29 A;  4OO2 A;  1JQI A;  3UU9 A;  3D9F A;  3GQT A;  3MDD A;  2FON A;  4U83 A;  1FS9 A;  2D29 A;  2DDH A;  4JEK A;  3X0Y A;  3SXQ A;  1EGE A;  3D1I A;  4L3Z A;  2RF7 A;  4X28 C;  2YYL A;  1T9G A;  4L1F A;  2Z1Q A;  2EBA A;  4X28 A;  3GNC A;  3MPJ A;  1EGD A;  2YYI A;  2E81 A;  2A1T A;  2JBT A;  5K3H A;  3MXL A;  2C0U A;  4KCF A;  4N5F A;  2ZAF A;  2OT4 A;  3BNH A;  2RDZ A;  5K3G A;  1R2J A;  5K3J A;  1QDB A;  4Q1O A;  3EOM A;  3OWA A;  3R7K A;  3TTB A;  3MKH A;  2OR0 A;  4WJY A;  2JBR A;  3OWM A;  3D9G A;  2R0N A;  4KTO A;  2YYJ A;  4Q0T A;  3SCE A;  3X0X A;  3AFF A;  3EON A;  2VR0 A;  4L3Y A;  2C12 A;  1BUC A;  4IRN A;  4Q17 A;  3MDE A;  3LG1 A;  3TOR A;  1WS9 A;  2DVL A;  2JBS A;  1IVH A;  1W07 A;  2WBI A;  2REH A;  3FCJ A;  3SWO A;  1GU6 A;  3GM6 A;  3II9 A;  4O5M A;  4Q5B A;  3D9D A;  2CX9 A;  3SF6 A;  1OAH A;  1SIR A;  3D6B A;  2ZO5 A;  3HWC A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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