1BUCA

Three-dimensional structure of butyryl-coa dehydrogenase from megasphaera elsdenii
Total Genus 154
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
154
sequence length
383
structure length
383
Chain Sequence
MDFNLTDIQQDFLKLAHDFGEKKLAPTVTERDHKGIYDKELIDELLSLGITGAYFEEKYGGSGDDGGDVLSYILAVEELAKYDAGVAITLSATVSLCANPIWQFGTEAQKEKFLVPLVEGTKLGAFGLTEPNAGTDASGQQTIATKNDDGTYTLNGSKIFITNGGAADIYIVFAMTDKSKGNHGITAFILEDGTPGFTYGKKEDKMGIHTSQTMELVFQDVKVPAENMLGEEGKGFKIAMMTLDGGRIGVAAQALGIAEAALADAVEYSKQRVQFGKPLCKFQSISFKLADMKMQIEAARNLVYKAACKKQEGKPFTVDAAIAKRVASDVAMRVTTEAVQIFGGYGYSEEYPVARHMRDAKITQIYEGTNEVQLMVTGGALLR
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords BUTYRYL-COA DEHYDROGENASE
publication title Three-dimensional structure of butyryl-CoA dehydrogenase from Megasphaera elsdenii.
pubmed doi rcsb
source organism Megasphaera elsdenii
total genus 154
structure length 383
sequence length 383
chains with identical sequence B
ec nomenclature ec 1.3.8.1: Short-chain acyl-CoA dehydrogenase.
pdb deposition date 1994-09-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00441 Acyl-CoA_dh_1 Acyl-CoA dehydrogenase, C-terminal domain
A PF02770 Acyl-CoA_dh_M Acyl-CoA dehydrogenase, middle domain
A PF02771 Acyl-CoA_dh_N Acyl-CoA dehydrogenase, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.540.10 Mainly Alpha Orthogonal Bundle Butyryl-Coa Dehydrogenase, subunit A; domain 1 Acyl-CoA dehydrogenase/oxidase, N-terminal domain 1bucA01
1.20.140.10 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A; domain 3 Butyryl-CoA Dehydrogenase, subunit A, domain 3 1bucA03
2.40.110.10 Mainly Beta Beta Barrel Butyryl-CoA Dehydrogenase, subunit A; domain 2 Butyryl-CoA Dehydrogenase, subunit A, domain 2 1bucA02
4ZXVA 3AFFA 4IV6A 1RX0A 2PG0A 3UU9A 3D1IA 2C0UA 4Q5CA 2R0MA 3GM6A 3FCJA 2OR0A 1WS9A 2YYGA 3II9A 4M9AA 4X28C 4HR3A 3BNJA 4Q0TA 1UKWA 4OO2A 4G5EA 2JIFA 2D29A 1EGDA 1SIRA 2J7AA 3MKHA 3MPIA 3F29A 3SXQA 3FO3A 3B96A 1BUCA 2RFQA 1EGEA 2YYKA 2ZAFA 2YYLA 4RM7A 3SF6A 4WJYA 2E80A 2WBIA 3HWCA 3LG1A 3D9FA 4JEKA 1GU6A 1EGCA 3X0XA 1U8VA 2UXWA 1SIQA 4KTOA 4L38A 3L1TA 4Q5BA 4KCFA 1R2JA 4DOYA 2VR0A 2CX9A 2RDZA 2VIGA 2A1TA 1QDBA 2REHA 2C12A 2EBAA 3PFDA 3X0YA 3MPJA 3MDDA 5K3IA 4L3ZA 2E81A 1UDYA 2YYMA 3RKHA 4XVXA 3EONA 2ZO5A 4Q17A 2YYJA 2FONA 3D6BA 2RF7A 3AFEA 3P4TA 3TORA 1IVHA 4W9UA 3SCEA 3MDEA 4NXLA 1FS9A 2JBSA 3D9GA 1FS8A 1W07A 2YYIA 2IX5A 4Q1OA 5K3GA 4O5MA 3D9DA 3BNGA 3BNHA 2DVLA 1FS7A 3EOMA 4X28A 3M9VA 4L3YA 4Q4UA 3MXLA 3R7KA 3BNFA 3D9EA 3MMOA 3LGQA 4U83A 2JBTA 2DDHA 4P13A 1T9GA 4ZYJA 1IS2A 3UBRA 3GNCA 3NF4A 3OIBA 3SWOA 3GQTA 2R0NA 3TTBA 1JQIA 1OAHA 3OWAA 4IRNA 2IX6A 2OT4A 2Z1QA 4N5FA 5K3JA 3OWMA 5K3HA 3S7WA 4L3XA 2JBRA 4L1FA
chains in the Genus database with same CATH superfamily
4ZXVA 4FZ4A 4KSAA 4AKGA 3AFFA 3D2RA 2PO4A 4IV6A 4FF3A 3N0RA 5B5WA 3CE2A 1RX0A 2PG0A 4P79A 4KS9A 4DZYA 4FF1A 3TZ4A 3UU9A 3D1IA 4H81A 4MPCA 4QICA 2C0UA 2BU7A 4Q5CA 4J1VA 3Q22A 3DJLA 2R0MA 3GM6A 3FCJA 2OR0A 4MP7A 3VKGA 1WS9A 1XFXA 2YYGA 3VADA 3II9A 4M9AA 4X28C 4AI6A 1X8ZA 3TTBA 4HR3A 3BNJA 4L3XA 4Q0TA 1UKWA 1RJ4A 2QR4A 1GJVA 1LVCA 2PNRA 4OO2A 4G5EA 2ZKJA 1RP3A 4JIOA 2JIFA 2D29A 1R3BA 1EGDA 3CRLA 4E02A 1XFWA 4AKIA 3TZ0A 1SIRA 4FF4A 2J7AA 2AO2A 3MKHA 3MPIA 2OEXA 3F29A 3SXQA 4E00A 2R02A 3Q0AA 3FO3A 3B96A 1BUCA 2RFQA 4MPEA 1EGEA 2HJNA 2ZAFA 2GBBA 2EBHX 2OEVA 2YYKA 2YYLA 4RM7A 3SF6A 2ZDXA 5EZ3A 3Q23A 3TZ2A 4WJYA 1K93A 2E80A 4HKSA 2BU6A 2FP1A 2WBIA 1Y8NA 3HWCA 5M4PA 3LG1A 4V25A 3D9FA 4JEKA 1GU6A 1EGCA 3X0XA 1U8VA 1XFVA 2UXWA 1SIQA 4KTOA 3KMLA 4L38A 3L1TA 4Q5BA 5GJVE 5B5VA 1XG2B 5BRMA 4KCFA 3TZ5A 1R2JA 5BRKA 4FF2A 2XS8A 4LQSB 4DOYA 4E01A 2VR0A 2CX9A 2RDZA 2VIGA 2A1TA 2CJ8A 1XFYA 1QDBA 2REHA 2C12A 2EBAA 3X29A 2F6LA 2Q8FA 3PFDA 3X0YA 3MPJA 3MDDA 5K3IA 2BU8A 2CJ5A 2E81A 4L3ZA 1UDYA 2YYMA 1X91A 3RKHA 2EC5A 4XVXA 4V26A 3EONA 3C3LA 2ZO5A 4Q17A 1SC5A 2YYJA 2R03A 3S7WA 2FONA 3D6BA 2CJ6A 5J71A 2AZEA 3Q24A 2RF7A 3AFEA 3P4TA 2EBFX 1IVHA 2XQRB 3TORA 3VKHA 4HKRA 1PI1A 5M4KA 4W9UA 1RJ1A 3SCEA 3MDEA 4NXLA 1SK6A 1FS9A 3CRKA 2JBSA 4F0XA 3D9GA 1FS8A 1W07A 2YYIA 2IX5A 2ZDYA 4Q1OA 2VF1A 5K3GA 2OJQA 4O5MA 3D9DA 3BNGA 3U33A 3BNHA 2DVLA 1PK0A 2BU5A 1FS7A 3EOMA 1K90A 3C46A 2XS1A 4X28A 3M9VA 1Y8OA 4L3YA 4Q4UA 1GKZA 4H85A 2CJ4A 3MXLA 3R7KA 3BNFA 3D9EA 1K8TA 3MMOA 4MPNA 2YGWA 1GKXA 1JM6A 2CJ7A 3LGQA 4U83A 2JBTA 2DDHA 1XFZA 4P13A 1X90A 5GJWE 5M4NA 1T9GA 4ZYJA 1IS2A 4KSFA 3UBRA 2BTZA 2LFWA 3GNCA 3NF4A 4AKHA 4G97A 5M4MA 3OIBA 3SWOA 2Q8HA 3C2PA 3GQTA 2BU2A 5J6AA 2R0NA 1S26A 1JQIA 1OAHA 3OWAA 4IRNA 2IX6A 2R05A 2Z1QA 2OT4A 4H7QA 2Q8GA 5B6BA 1Y0VA 4N5FA 2E0AA 5K3JA 2FP2A 3OWMA 4MP2A 5K3HA 4LQQB 2Q8IA 4JIZA 1Y8PA 1XFUA 2JBRA 4L1FA
chains in the Genus database with same CATH topology
4ZXVA 3AFFA 4IV6A 1RX0A 2PG0A 3UU9A 3D1IA 2C0UA 4Q5CA 2R0MA 3GM6A 3FCJA 2OR0A 1WS9A 2YYGA 3II9A 4M9AA 4X28C 4HR3A 3BNJA 4Q0TA 1UKWA 4OO2A 4G5EA 2JIFA 2D29A 1EGDA 1SIRA 2J7AA 3MKHA 3MPIA 3F29A 3SXQA 3FO3A 3B96A 1BUCA 2RFQA 1EGEA 2YYKA 2ZAFA 2YYLA 4RM7A 3SF6A 4WJYA 2E80A 2WBIA 3HWCA 3LG1A 3D9FA 4JEKA 1GU6A 1EGCA 3X0XA 1U8VA 2UXWA 1SIQA 4KTOA 4L38A 3L1TA 4Q5BA 4KCFA 1R2JA 4DOYA 2VR0A 2CX9A 2RDZA 2VIGA 2A1TA 1QDBA 2REHA 2C12A 2EBAA 3PFDA 3X0YA 3MPJA 3MDDA 5K3IA 4L3ZA 2E81A 1UDYA 2YYMA 3RKHA 4XVXA 3EONA 2ZO5A 4Q17A 2YYJA 2FONA 3D6BA 2RF7A 3AFEA 3P4TA 3TORA 1IVHA 4W9UA 3SCEA 3MDEA 4NXLA 1FS9A 2JBSA 3D9GA 1FS8A 1W07A 2YYIA 2IX5A 4Q1OA 5K3GA 4O5MA 3D9DA 3BNGA 3BNHA 2DVLA 1FS7A 3EOMA 4X28A 3M9VA 4L3YA 4Q4UA 3MXLA 3R7KA 3BNFA 3D9EA 3MMOA 3LGQA 4U83A 2JBTA 2DDHA 4P13A 1T9GA 4ZYJA 1IS2A 3UBRA 3GNCA 3NF4A 3OIBA 3SWOA 3GQTA 2R0NA 3TTBA 1JQIA 1OAHA 3OWAA 4IRNA 2IX6A 2OT4A 2Z1QA 4N5FA 5K3JA 3OWMA 5K3HA 3S7WA 4L3XA 2JBRA 4L1FA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4ZXV A;  3AFF A;  4IV6 A;  1RX0 A;  2PG0 A;  3UU9 A;  3D1I A;  2C0U A;  4Q5C A;  2R0M A;  3GM6 A;  3FCJ A;  2OR0 A;  1WS9 A;  2YYG A;  3II9 A;  4M9A A;  4X28 C;  4HR3 A;  3BNJ A;  4Q0T A;  1UKW A;  4OO2 A;  4G5E A;  2JIF A;  2D29 A;  1EGD A;  1SIR A;  2J7A A;  3MKH A;  3MPI A;  3F29 A;  3SXQ A;  3FO3 A;  3B96 A;  1BUC A;  2RFQ A;  1EGE A;  2YYK A;  2ZAF A;  2YYL A;  4RM7 A;  3SF6 A;  4WJY A;  2E80 A;  2WBI A;  3HWC A;  3LG1 A;  3D9F A;  4JEK A;  1GU6 A;  1EGC A;  3X0X A;  1U8V A;  2UXW A;  1SIQ A;  4KTO A;  4L38 A;  3L1T A;  4Q5B A;  4KCF A;  1R2J A;  4DOY A;  2VR0 A;  2CX9 A;  2RDZ A;  2VIG A;  2A1T A;  1QDB A;  2REH A;  2C12 A;  2EBA A;  3PFD A;  3X0Y A;  3MPJ A;  3MDD A;  5K3I A;  4L3Z A;  2E81 A;  1UDY A;  2YYM A;  3RKH A;  4XVX A;  3EON A;  2ZO5 A;  4Q17 A;  2YYJ A;  2FON A;  3D6B A;  2RF7 A;  3AFE A;  3P4T A;  3TOR A;  1IVH A;  4W9U A;  3SCE A;  3MDE A;  4NXL A;  1FS9 A;  2JBS A;  3D9G A;  1FS8 A;  1W07 A;  2YYI A;  2IX5 A;  4Q1O A;  5K3G A;  4O5M A;  3D9D A;  3BNG A;  3BNH A;  2DVL A;  1FS7 A;  3EOM A;  4X28 A;  3M9V A;  4L3Y A;  4Q4U A;  3MXL A;  3R7K A;  3BNF A;  3D9E A;  3MMO A;  3LGQ A;  4U83 A;  2JBT A;  2DDH A;  4P13 A;  1T9G A;  4ZYJ A;  1IS2 A;  3UBR A;  3GNC A;  3NF4 A;  3OIB A;  3SWO A;  3GQT A;  2R0N A;  3TTB A;  1JQI A;  1OAH A;  3OWA A;  4IRN A;  2IX6 A;  2OT4 A;  2Z1Q A;  4N5F A;  5K3J A;  3OWM A;  5K3H A;  3S7W A;  4L3X A;  2JBR A;  4L1F A; 
#chains in the Genus database with same CATH topology
 4ZXV A;  4FZ4 A;  4KSA A;  4AKG A;  3AFF A;  3D2R A;  2PO4 A;  4IV6 A;  4FF3 A;  3N0R A;  5B5W A;  3CE2 A;  1RX0 A;  2PG0 A;  4P79 A;  4KS9 A;  4DZY A;  4FF1 A;  3TZ4 A;  3UU9 A;  3D1I A;  4H81 A;  4MPC A;  4QIC A;  2C0U A;  2BU7 A;  4Q5C A;  4J1V A;  3Q22 A;  3DJL A;  2R0M A;  3GM6 A;  3FCJ A;  2OR0 A;  4MP7 A;  3VKG A;  1WS9 A;  1XFX A;  2YYG A;  3VAD A;  3II9 A;  4M9A A;  4X28 C;  4AI6 A;  1X8Z A;  3TTB A;  4HR3 A;  3BNJ A;  4L3X A;  4Q0T A;  1UKW A;  1RJ4 A;  2QR4 A;  1GJV A;  1LVC A;  2PNR A;  4OO2 A;  4G5E A;  2ZKJ A;  1RP3 A;  4JIO A;  2JIF A;  2D29 A;  1R3B A;  1EGD A;  3CRL A;  4E02 A;  1XFW A;  4AKI A;  3TZ0 A;  1SIR A;  4FF4 A;  2J7A A;  2AO2 A;  3MKH A;  3MPI A;  2OEX A;  3F29 A;  3SXQ A;  4E00 A;  2R02 A;  3Q0A A;  3FO3 A;  3B96 A;  1BUC A;  2RFQ A;  4MPE A;  1EGE A;  2HJN A;  2ZAF A;  2GBB A;  2EBH X;  2OEV A;  2YYK A;  2YYL A;  4RM7 A;  3SF6 A;  2ZDX A;  5EZ3 A;  3Q23 A;  3TZ2 A;  4WJY A;  1K93 A;  2E80 A;  4HKS A;  2BU6 A;  2FP1 A;  2WBI A;  1Y8N A;  3HWC A;  5M4P A;  3LG1 A;  4V25 A;  3D9F A;  4JEK A;  1GU6 A;  1EGC A;  3X0X A;  1U8V A;  1XFV A;  2UXW A;  1SIQ A;  4KTO A;  3KML A;  4L38 A;  3L1T A;  4Q5B A;  5GJV E;  5B5V A;  1XG2 B;  5BRM A;  4KCF A;  3TZ5 A;  1R2J A;  5BRK A;  4FF2 A;  2XS8 A;  4LQS B;  4DOY A;  4E01 A;  2VR0 A;  2CX9 A;  2RDZ A;  2VIG A;  2A1T A;  2CJ8 A;  1XFY A;  1QDB A;  2REH A;  2C12 A;  2EBA A;  3X29 A;  2F6L A;  2Q8F A;  3PFD A;  3X0Y A;  3MPJ A;  3MDD A;  5K3I A;  2BU8 A;  2CJ5 A;  2E81 A;  4L3Z A;  1UDY A;  2YYM A;  1X91 A;  3RKH A;  2EC5 A;  4XVX A;  4V26 A;  3EON A;  3C3L A;  2ZO5 A;  4Q17 A;  1SC5 A;  2YYJ A;  2R03 A;  3S7W A;  2FON A;  3D6B A;  2CJ6 A;  5J71 A;  2AZE A;  3Q24 A;  2RF7 A;  3AFE A;  3P4T A;  2EBF X;  1IVH A;  2XQR B;  3TOR A;  3VKH A;  4HKR A;  1PI1 A;  5M4K A;  4W9U A;  1RJ1 A;  3SCE A;  3MDE A;  4NXL A;  1SK6 A;  1FS9 A;  3CRK A;  2JBS A;  4F0X A;  3D9G A;  1FS8 A;  1W07 A;  2YYI A;  2IX5 A;  2ZDY A;  4Q1O A;  2VF1 A;  5K3G A;  2OJQ A;  4O5M A;  3D9D A;  3BNG A;  3U33 A;  3BNH A;  2DVL A;  1PK0 A;  2BU5 A;  1FS7 A;  3EOM A;  1K90 A;  3C46 A;  2XS1 A;  4X28 A;  3M9V A;  1Y8O A;  4L3Y A;  4Q4U A;  1GKZ A;  4H85 A;  2CJ4 A;  3MXL A;  3R7K A;  3BNF A;  3D9E A;  1K8T A;  3MMO A;  4MPN A;  2YGW A;  1GKX A;  1JM6 A;  2CJ7 A;  3LGQ A;  4U83 A;  2JBT A;  2DDH A;  1XFZ A;  4P13 A;  1X90 A;  5GJW E;  5M4N A;  1T9G A;  4ZYJ A;  1IS2 A;  4KSF A;  3UBR A;  2BTZ A;  2LFW A;  3GNC A;  3NF4 A;  4AKH A;  4G97 A;  5M4M A;  3OIB A;  3SWO A;  2Q8H A;  3C2P A;  3GQT A;  2BU2 A;  5J6A A;  2R0N A;  1S26 A;  1JQI A;  1OAH A;  3OWA A;  4IRN A;  2IX6 A;  2R05 A;  2Z1Q A;  2OT4 A;  4H7Q A;  2Q8G A;  5B6B A;  1Y0V A;  4N5F A;  2E0A A;  5K3J A;  2FP2 A;  3OWM A;  4MP2 A;  5K3H A;  4LQQ B;  2Q8I A;  4JIZ A;  1Y8P A;  1XFU A;  2JBR A;  4L1F A; 
#chains in the Genus database with same CATH homology
 4ZXV A;  3AFF A;  4IV6 A;  1RX0 A;  2PG0 A;  3UU9 A;  3D1I A;  2C0U A;  4Q5C A;  2R0M A;  3GM6 A;  3FCJ A;  2OR0 A;  1WS9 A;  2YYG A;  3II9 A;  4M9A A;  4X28 C;  4HR3 A;  3BNJ A;  4Q0T A;  1UKW A;  4OO2 A;  4G5E A;  2JIF A;  2D29 A;  1EGD A;  1SIR A;  2J7A A;  3MKH A;  3MPI A;  3F29 A;  3SXQ A;  3FO3 A;  3B96 A;  1BUC A;  2RFQ A;  1EGE A;  2YYK A;  2ZAF A;  2YYL A;  4RM7 A;  3SF6 A;  4WJY A;  2E80 A;  2WBI A;  3HWC A;  3LG1 A;  3D9F A;  4JEK A;  1GU6 A;  1EGC A;  3X0X A;  1U8V A;  2UXW A;  1SIQ A;  4KTO A;  4L38 A;  3L1T A;  4Q5B A;  4KCF A;  1R2J A;  4DOY A;  2VR0 A;  2CX9 A;  2RDZ A;  2VIG A;  2A1T A;  1QDB A;  2REH A;  2C12 A;  2EBA A;  3PFD A;  3X0Y A;  3MPJ A;  3MDD A;  5K3I A;  4L3Z A;  2E81 A;  1UDY A;  2YYM A;  3RKH A;  4XVX A;  3EON A;  2ZO5 A;  4Q17 A;  2YYJ A;  2FON A;  3D6B A;  2RF7 A;  3AFE A;  3P4T A;  3TOR A;  1IVH A;  4W9U A;  3SCE A;  3MDE A;  4NXL A;  1FS9 A;  2JBS A;  3D9G A;  1FS8 A;  1W07 A;  2YYI A;  2IX5 A;  4Q1O A;  5K3G A;  4O5M A;  3D9D A;  3BNG A;  3BNH A;  2DVL A;  1FS7 A;  3EOM A;  4X28 A;  3M9V A;  4L3Y A;  4Q4U A;  3MXL A;  3R7K A;  3BNF A;  3D9E A;  3MMO A;  3LGQ A;  4U83 A;  2JBT A;  2DDH A;  4P13 A;  1T9G A;  4ZYJ A;  1IS2 A;  3UBR A;  3GNC A;  3NF4 A;  3OIB A;  3SWO A;  3GQT A;  2R0N A;  3TTB A;  1JQI A;  1OAH A;  3OWA A;  4IRN A;  2IX6 A;  2OT4 A;  2Z1Q A;  4N5F A;  5K3J A;  3OWM A;  5K3H A;  3S7W A;  4L3X A;  2JBR A;  4L1F A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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