5K3GA

Crystals structure of acyl-coa oxidase-1 in caenorhabditis elegans, apo form-i
Total Genus 266
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
266
sequence length
668
structure length
629
Chain Sequence
VHLNKTIQEGDNPDLTAERLTATFDTHAMAAQIYGGEMRARRRREITAKLAEIPELHDSMPLPYMTREEKIMESARKLTVLTQRMSEIIDPTDAGELYHLNNEVLGIEGNPMALHGVMFIPALNAQASDEQQAKWLIRALRREIIGTYAQTEMGHGTNLQNLETTATYDIGTQEFVLHTPKITALKWWPGNLGKSSNYAVVVAHMYIKGKNFGPHTFMVPLRDEKTHKPLPGITIGDIGPKMAYNIVDNGFLGFNNYRIPRTNLLMRHTKVEADGTYIYMLTGQAIMLSYALNIATRYSAVRRQGQIDKNEPEVKVLEYQTQQHRLFPFIARAYAFQFAGAETVKLYERDLHALTSGLKSVVTHQTGEGIEQARMACGGHGYSMASYISEIYGVAIGGVMLLQLARYLVKSAALVKSGKASQLGPLVAYLGARSEPTSLIDRVPNGGITEYIKTFQHIAKRQTLKAANKFFGLMENGEKREIAWNKSSVELNRASRLHTRLFIVEAFARRVNEIGDITIKEALSDLLHLHVNYELLDVATYALEDGFMSSTQLDYVRDQLYFYLQKIRPNAVSLLDSWEFSDRELRSVLGRRDGHVYENLFKWAKESPLNKTDVLPSVDTYLKPMMEKA
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Acyl-coenzyme A oxidase
publication title Structural characterization of acyl-CoA oxidases reveals a direct link between pheromone biosynthesis and metabolic state in Caenorhabditis elegans.
pubmed doi rcsb
source organism Caenorhabditis elegans
molecule tags Oxidoreductase
total genus 266
structure length 629
sequence length 668
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2016-05-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01756 ACOX Acyl-CoA oxidase
A PF02770 Acyl-CoA_dh_M Acyl-CoA dehydrogenase, middle domain
A PF14749 Acyl-CoA_ox_N Acyl-coenzyme A oxidase N-terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.540.10 Mainly Alpha Orthogonal Bundle Butyryl-Coa Dehydrogenase, subunit A; domain 1 Acyl-CoA dehydrogenase/oxidase, N-terminal domain 5k3gA01
1.20.140.10 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A; domain 3 Butyryl-CoA Dehydrogenase, subunit A, domain 3 5k3gA03
1.20.140.10 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A; domain 3 Butyryl-CoA Dehydrogenase, subunit A, domain 3 5k3gA04
2.40.110.10 Mainly Beta Beta Barrel Butyryl-CoA Dehydrogenase, subunit A; domain 2 Butyryl-CoA Dehydrogenase, subunit A, domain 2 5k3gA02
2CX9A 3LGQA 4Q0TA 4ZXVA 3BNHA 2DDHA 3UU9A 3PFDA 3HWCA 4RM7A 3II9A 4M9AA 3D1IA 3SF6A 3D9GA 3M9VA 5K3GA 2YYMA 2ZO5A 3BNGA 3UBRA 2OT4A 2A1TA 4L3YA 3X0XA 3AFFA 2ZAFA 5K3HA 2OR0A 3S7WA 3RKHA 3MMOA 4Q5BA 4L3ZA 3GNCA 2REHA 2JBTA 4Q4UA 2IX5A 3R7KA 3X0YA 1OAHA 2E80A 2YYGA 3SWOA 3EOMA 4Q1OA 4U83A 2YYIA 2YYKA 3SCEA 4Q5CA 1FS7A 1SIQA 3P4TA 3TORA 1EGEA 4G5EA 3SXQA 2RDZA 2YYLA 4HR3A 3OWMA 3D9DA 4X28C 3MKHA 3EONA 2JBSA 4OO2A 2C0UA 2JIFA 3NF4A 2E81A 1UKWA 3BNJA 2Z1QA 4O5MA 3FCJA 2R0NA 3D6BA 3LG1A 1T9GA 4JEKA 3MXLA 2YYJA 2RFQA 4WJYA 3L1TA 4KCFA 3FO3A 2UXWA 2FONA 2C12A 3D9FA 3AFEA 4NXLA 2VIGA 1SIRA 1WS9A 1FS8A 5K3JA 4P13A 5K3IA 1BUCA 1R2JA 3GQTA 2D29A 3B96A 2WBIA 3OWAA 4X28A 4IRNA 4XVXA 3D9EA 2VR0A 1QDBA 3MDDA 1IVHA 3MPIA 2IX6A 4KTOA 3F29A 2JBRA 4L3XA 4ZYJA 2R0MA 1EGDA 3GM6A 3TTBA 1RX0A 1FS9A 3MPJA 4L38A 4Q17A 1UDYA 1EGCA 4IV6A 4W9UA 4N5FA 3OIBA 2J7AA 1JQIA 1U8VA 3MDEA 1GU6A 2EBAA 3BNFA 4L1FA 2DVLA 4DOYA 2PG0A 1W07A 2RF7A 1IS2A
chains in the Genus database with same CATH superfamily
2CX9A 3N0RA 3LGQA 1RP3A 4Q0TA 4ZXVA 3BNHA 2QR4A 2DDHA 3UU9A 3PFDA 3HWCA 4RM7A 3II9A 1XFWA 4M9AA 2XS8A 3D1IA 2XS1A 2HJNA 5M4NA 3SF6A 3D9GA 3M9VA 3VKGA 4V25A 4F0XA 5K3GA 1X91A 2R05A 5B5VA 2YYMA 4H7QA 2CJ5A 1X90A 3C46A 4LQQB 2ZO5A 3BNGA 5GJWE 5BRMA 2OT4A 3UBRA 3VKHA 2A1TA 4L3YA 4H81A 2PO4A 4AI6A 3X0XA 3AFFA 2ZAFA 5K3HA 2ZDXA 3X29A 2OR0A 3S7WA 2BU8A 1K93A 3RKHA 3MMOA 4Q5BA 4L3ZA 2CJ4A 5J71A 3GNCA 2REHA 2JBTA 4Q4UA 4JIZA 4J1VA 4E01A 2IX5A 3R7KA 3X0YA 1OAHA 2E80A 4MPNA 1R3BA 2YYGA 1SK6A 3SWOA 1LVCA 3EOMA 3TZ0A 1XFYA 4KSFA 4Q1OA 4KS9A 4U83A 2YYIA 2YYKA 3SCEA 4Q5CA 1FS7A 3KMLA 4E00A 3D2RA 1SIQA 3P4TA 5EZ3A 3TORA 1EGEA 2E0AA 4G5EA 2PNRA 3SXQA 2CJ7A 2ZDYA 2Q8IA 2RDZA 2YYLA 4HR3A 3OWMA 3D9DA 4X28C 3CRLA 3MKHA 1GKXA 3EONA 2JBSA 2F6LA 4OO2A 1XG2B 2C0UA 2JIFA 3NF4A 1XFZA 2BU2A 2Q8HA 4LQSB 2R03A 2E81A 1UKWA 4DZYA 4AKGA 2EBHX 3BNJA 2Z1QA 1PI1A 4O5MA 2Q8FA 4G97A 1S26A 2R02A 1JM6A 1Y8PA 4FZ4A 3FCJA 1RJ1A 1Y8NA 2R0NA 3CE2A 4MPEA 4FF4A 2ZKJA 3D6BA 1XFXA 2OJQA 2VF1A 3VADA 3LG1A 1T9GA 4JEKA 5B5WA 3MXLA 2YYJA 2RFQA 4WJYA 3L1TA 4KCFA 3FO3A 4KSAA 2UXWA 3C3LA 2FONA 2C12A 3D9FA 3DJLA 3AFEA 1XFVA 4NXLA 4MP2A 3TZ4A 5M4KA 2AO2A 3Q0AA 3CRKA 3U33A 2VIGA 4MP7A 3Q22A 1SIRA 1K8TA 2XQRB 1WS9A 1FS8A 4QICA 4MPCA 5K3JA 2BU6A 4P13A 1X8ZA 5K3IA 1BUCA 1R2JA 3GQTA 2OEVA 4V26A 1RJ4A 2D29A 3Q23A 3B96A 2WBIA 3OWAA 4X28A 4IRNA 4XVXA 1Y8OA 5M4PA 4FF1A 3D9EA 2VR0A 1QDBA 2Q8GA 3MDDA 5B6BA 1IVHA 3MPIA 2CJ8A 2IX6A 4KTOA 2CJ6A 3F29A 4HKSA 2EBFX 4E02A 2AZEA 3Q24A 2JBRA 5BRKA 2GBBA 4L3XA 2BU5A 4ZYJA 3TZ5A 4FF3A 1K90A 4H85A 5GJVE 2R0MA 1EGDA 1PK0A 3GM6A 3TTBA 1RX0A 2FP2A 1FS9A 4AKHA 4HKRA 2OEXA 4P79A 3MPJA 2EC5A 2YGWA 4L38A 4Q17A 1UDYA 1GKZA 1XFUA 1EGCA 4IV6A 3C2PA 2LFWA 1GJVA 4W9UA 2FP1A 4JIOA 4N5FA 3OIBA 2BTZA 2J7AA 1JQIA 2BU7A 5J6AA 1U8VA 3MDEA 3TZ2A 5M4MA 1GU6A 4AKIA 2EBAA 3BNFA 4L1FA 2DVLA 4DOYA 2PG0A 1W07A 1Y0VA 2RF7A 4FF2A 1SC5A 1IS2A
chains in the Genus database with same CATH topology
2CX9A 3LGQA 4Q0TA 4ZXVA 3BNHA 2DDHA 3UU9A 3PFDA 3HWCA 4RM7A 3II9A 4M9AA 3D1IA 3SF6A 3D9GA 3M9VA 5K3GA 2YYMA 2ZO5A 3BNGA 3UBRA 2OT4A 2A1TA 4L3YA 3X0XA 3AFFA 2ZAFA 5K3HA 2OR0A 3S7WA 3RKHA 3MMOA 4Q5BA 4L3ZA 3GNCA 2REHA 2JBTA 4Q4UA 2IX5A 3R7KA 3X0YA 1OAHA 2E80A 2YYGA 3SWOA 3EOMA 4Q1OA 4U83A 2YYIA 2YYKA 3SCEA 4Q5CA 1FS7A 1SIQA 3P4TA 3TORA 1EGEA 4G5EA 3SXQA 2RDZA 2YYLA 4HR3A 3OWMA 3D9DA 4X28C 3MKHA 3EONA 2JBSA 4OO2A 2C0UA 2JIFA 3NF4A 2E81A 1UKWA 3BNJA 2Z1QA 4O5MA 3FCJA 2R0NA 3D6BA 3LG1A 1T9GA 4JEKA 3MXLA 2YYJA 2RFQA 4WJYA 3L1TA 4KCFA 3FO3A 2UXWA 2FONA 2C12A 3D9FA 3AFEA 4NXLA 2VIGA 1SIRA 1WS9A 1FS8A 5K3JA 4P13A 5K3IA 1BUCA 1R2JA 3GQTA 2D29A 3B96A 2WBIA 3OWAA 4X28A 4IRNA 4XVXA 3D9EA 2VR0A 1QDBA 3MDDA 1IVHA 3MPIA 2IX6A 4KTOA 3F29A 2JBRA 4L3XA 4ZYJA 2R0MA 1EGDA 3GM6A 3TTBA 1RX0A 1FS9A 3MPJA 4L38A 4Q17A 1UDYA 1EGCA 4IV6A 4W9UA 4N5FA 3OIBA 2J7AA 1JQIA 1U8VA 3MDEA 1GU6A 2EBAA 3BNFA 4L1FA 2DVLA 4DOYA 2PG0A 1W07A 2RF7A 1IS2A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2CX9 A;  3LGQ A;  4Q0T A;  4ZXV A;  3BNH A;  2DDH A;  3UU9 A;  3PFD A;  3HWC A;  4RM7 A;  3II9 A;  4M9A A;  3D1I A;  3SF6 A;  3D9G A;  3M9V A;  5K3G A;  2YYM A;  2ZO5 A;  3BNG A;  3UBR A;  2OT4 A;  2A1T A;  4L3Y A;  3X0X A;  3AFF A;  2ZAF A;  5K3H A;  2OR0 A;  3S7W A;  3RKH A;  3MMO A;  4Q5B A;  4L3Z A;  3GNC A;  2REH A;  2JBT A;  4Q4U A;  2IX5 A;  3R7K A;  3X0Y A;  1OAH A;  2E80 A;  2YYG A;  3SWO A;  3EOM A;  4Q1O A;  4U83 A;  2YYI A;  2YYK A;  3SCE A;  4Q5C A;  1FS7 A;  1SIQ A;  3P4T A;  3TOR A;  1EGE A;  4G5E A;  3SXQ A;  2RDZ A;  2YYL A;  4HR3 A;  3OWM A;  3D9D A;  4X28 C;  3MKH A;  3EON A;  2JBS A;  4OO2 A;  2C0U A;  2JIF A;  3NF4 A;  2E81 A;  1UKW A;  3BNJ A;  2Z1Q A;  4O5M A;  3FCJ A;  2R0N A;  3D6B A;  3LG1 A;  1T9G A;  4JEK A;  3MXL A;  2YYJ A;  2RFQ A;  4WJY A;  3L1T A;  4KCF A;  3FO3 A;  2UXW A;  2FON A;  2C12 A;  3D9F A;  3AFE A;  4NXL A;  2VIG A;  1SIR A;  1WS9 A;  1FS8 A;  5K3J A;  4P13 A;  5K3I A;  1BUC A;  1R2J A;  3GQT A;  2D29 A;  3B96 A;  2WBI A;  3OWA A;  4X28 A;  4IRN A;  4XVX A;  3D9E A;  2VR0 A;  1QDB A;  3MDD A;  1IVH A;  3MPI A;  2IX6 A;  4KTO A;  3F29 A;  2JBR A;  4L3X A;  4ZYJ A;  2R0M A;  1EGD A;  3GM6 A;  3TTB A;  1RX0 A;  1FS9 A;  3MPJ A;  4L38 A;  4Q17 A;  1UDY A;  1EGC A;  4IV6 A;  4W9U A;  4N5F A;  3OIB A;  2J7A A;  1JQI A;  1U8V A;  3MDE A;  1GU6 A;  2EBA A;  3BNF A;  4L1F A;  2DVL A;  4DOY A;  2PG0 A;  1W07 A;  2RF7 A;  1IS2 A; 
#chains in the Genus database with same CATH topology
 2CX9 A;  3N0R A;  3LGQ A;  1RP3 A;  4Q0T A;  4ZXV A;  3BNH A;  2QR4 A;  2DDH A;  3UU9 A;  3PFD A;  3HWC A;  4RM7 A;  3II9 A;  1XFW A;  4M9A A;  2XS8 A;  3D1I A;  2XS1 A;  2HJN A;  5M4N A;  3SF6 A;  3D9G A;  3M9V A;  3VKG A;  4V25 A;  4F0X A;  5K3G A;  1X91 A;  2R05 A;  5B5V A;  2YYM A;  4H7Q A;  2CJ5 A;  1X90 A;  3C46 A;  4LQQ B;  2ZO5 A;  3BNG A;  5GJW E;  5BRM A;  2OT4 A;  3UBR A;  3VKH A;  2A1T A;  4L3Y A;  4H81 A;  2PO4 A;  4AI6 A;  3X0X A;  3AFF A;  2ZAF A;  5K3H A;  2ZDX A;  3X29 A;  2OR0 A;  3S7W A;  2BU8 A;  1K93 A;  3RKH A;  3MMO A;  4Q5B A;  4L3Z A;  2CJ4 A;  5J71 A;  3GNC A;  2REH A;  2JBT A;  4Q4U A;  4JIZ A;  4J1V A;  4E01 A;  2IX5 A;  3R7K A;  3X0Y A;  1OAH A;  2E80 A;  4MPN A;  1R3B A;  2YYG A;  1SK6 A;  3SWO A;  1LVC A;  3EOM A;  3TZ0 A;  1XFY A;  4KSF A;  4Q1O A;  4KS9 A;  4U83 A;  2YYI A;  2YYK A;  3SCE A;  4Q5C A;  1FS7 A;  3KML A;  4E00 A;  3D2R A;  1SIQ A;  3P4T A;  5EZ3 A;  3TOR A;  1EGE A;  2E0A A;  4G5E A;  2PNR A;  3SXQ A;  2CJ7 A;  2ZDY A;  2Q8I A;  2RDZ A;  2YYL A;  4HR3 A;  3OWM A;  3D9D A;  4X28 C;  3CRL A;  3MKH A;  1GKX A;  3EON A;  2JBS A;  2F6L A;  4OO2 A;  1XG2 B;  2C0U A;  2JIF A;  3NF4 A;  1XFZ A;  2BU2 A;  2Q8H A;  4LQS B;  2R03 A;  2E81 A;  1UKW A;  4DZY A;  4AKG A;  2EBH X;  3BNJ A;  2Z1Q A;  1PI1 A;  4O5M A;  2Q8F A;  4G97 A;  1S26 A;  2R02 A;  1JM6 A;  1Y8P A;  4FZ4 A;  3FCJ A;  1RJ1 A;  1Y8N A;  2R0N A;  3CE2 A;  4MPE A;  4FF4 A;  2ZKJ A;  3D6B A;  1XFX A;  2OJQ A;  2VF1 A;  3VAD A;  3LG1 A;  1T9G A;  4JEK A;  5B5W A;  3MXL A;  2YYJ A;  2RFQ A;  4WJY A;  3L1T A;  4KCF A;  3FO3 A;  4KSA A;  2UXW A;  3C3L A;  2FON A;  2C12 A;  3D9F A;  3DJL A;  3AFE A;  1XFV A;  4NXL A;  4MP2 A;  3TZ4 A;  5M4K A;  2AO2 A;  3Q0A A;  3CRK A;  3U33 A;  2VIG A;  4MP7 A;  3Q22 A;  1SIR A;  1K8T A;  2XQR B;  1WS9 A;  1FS8 A;  4QIC A;  4MPC A;  5K3J A;  2BU6 A;  4P13 A;  1X8Z A;  5K3I A;  1BUC A;  1R2J A;  3GQT A;  2OEV A;  4V26 A;  1RJ4 A;  2D29 A;  3Q23 A;  3B96 A;  2WBI A;  3OWA A;  4X28 A;  4IRN A;  4XVX A;  1Y8O A;  5M4P A;  4FF1 A;  3D9E A;  2VR0 A;  1QDB A;  2Q8G A;  3MDD A;  5B6B A;  1IVH A;  3MPI A;  2CJ8 A;  2IX6 A;  4KTO A;  2CJ6 A;  3F29 A;  4HKS A;  2EBF X;  4E02 A;  2AZE A;  3Q24 A;  2JBR A;  5BRK A;  2GBB A;  4L3X A;  2BU5 A;  4ZYJ A;  3TZ5 A;  4FF3 A;  1K90 A;  4H85 A;  5GJV E;  2R0M A;  1EGD A;  1PK0 A;  3GM6 A;  3TTB A;  1RX0 A;  2FP2 A;  1FS9 A;  4AKH A;  4HKR A;  2OEX A;  4P79 A;  3MPJ A;  2EC5 A;  2YGW A;  4L38 A;  4Q17 A;  1UDY A;  1GKZ A;  1XFU A;  1EGC A;  4IV6 A;  3C2P A;  2LFW A;  1GJV A;  4W9U A;  2FP1 A;  4JIO A;  4N5F A;  3OIB A;  2BTZ A;  2J7A A;  1JQI A;  2BU7 A;  5J6A A;  1U8V A;  3MDE A;  3TZ2 A;  5M4M A;  1GU6 A;  4AKI A;  2EBA A;  3BNF A;  4L1F A;  2DVL A;  4DOY A;  2PG0 A;  1W07 A;  1Y0V A;  2RF7 A;  4FF2 A;  1SC5 A;  1IS2 A; 
#chains in the Genus database with same CATH homology
 2CX9 A;  3LGQ A;  4Q0T A;  4ZXV A;  3BNH A;  2DDH A;  3UU9 A;  3PFD A;  3HWC A;  4RM7 A;  3II9 A;  4M9A A;  3D1I A;  3SF6 A;  3D9G A;  3M9V A;  5K3G A;  2YYM A;  2ZO5 A;  3BNG A;  3UBR A;  2OT4 A;  2A1T A;  4L3Y A;  3X0X A;  3AFF A;  2ZAF A;  5K3H A;  2OR0 A;  3S7W A;  3RKH A;  3MMO A;  4Q5B A;  4L3Z A;  3GNC A;  2REH A;  2JBT A;  4Q4U A;  2IX5 A;  3R7K A;  3X0Y A;  1OAH A;  2E80 A;  2YYG A;  3SWO A;  3EOM A;  4Q1O A;  4U83 A;  2YYI A;  2YYK A;  3SCE A;  4Q5C A;  1FS7 A;  1SIQ A;  3P4T A;  3TOR A;  1EGE A;  4G5E A;  3SXQ A;  2RDZ A;  2YYL A;  4HR3 A;  3OWM A;  3D9D A;  4X28 C;  3MKH A;  3EON A;  2JBS A;  4OO2 A;  2C0U A;  2JIF A;  3NF4 A;  2E81 A;  1UKW A;  3BNJ A;  2Z1Q A;  4O5M A;  3FCJ A;  2R0N A;  3D6B A;  3LG1 A;  1T9G A;  4JEK A;  3MXL A;  2YYJ A;  2RFQ A;  4WJY A;  3L1T A;  4KCF A;  3FO3 A;  2UXW A;  2FON A;  2C12 A;  3D9F A;  3AFE A;  4NXL A;  2VIG A;  1SIR A;  1WS9 A;  1FS8 A;  5K3J A;  4P13 A;  5K3I A;  1BUC A;  1R2J A;  3GQT A;  2D29 A;  3B96 A;  2WBI A;  3OWA A;  4X28 A;  4IRN A;  4XVX A;  3D9E A;  2VR0 A;  1QDB A;  3MDD A;  1IVH A;  3MPI A;  2IX6 A;  4KTO A;  3F29 A;  2JBR A;  4L3X A;  4ZYJ A;  2R0M A;  1EGD A;  3GM6 A;  3TTB A;  1RX0 A;  1FS9 A;  3MPJ A;  4L38 A;  4Q17 A;  1UDY A;  1EGC A;  4IV6 A;  4W9U A;  4N5F A;  3OIB A;  2J7A A;  1JQI A;  1U8V A;  3MDE A;  1GU6 A;  2EBA A;  3BNF A;  4L1F A;  2DVL A;  4DOY A;  2PG0 A;  1W07 A;  2RF7 A;  1IS2 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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