5K3GA

Crystals structure of acyl-coa oxidase-1 in caenorhabditis elegans, apo form-i
Total Genus 266
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
266
sequence length
668
structure length
629
Chain Sequence
VHLNKTIQEGDNPDLTAERLTATFDTHAMAAQIYGGEMRARRRREITAKLAEIPELHDSMPLPYMTREEKIMESARKLTVLTQRMSEIIDPTDAGELYHLNNEVLGIEGNPMALHGVMFIPALNAQASDEQQAKWLIRALRREIIGTYAQTEMGHGTNLQNLETTATYDIGTQEFVLHTPKITALKWWPGNLGKSSNYAVVVAHMYIKGKNFGPHTFMVPLRDEKTHKPLPGITIGDIGPKMAYNIVDNGFLGFNNYRIPRTNLLMRHTKVEADGTYIYMLTGQAIMLSYALNIATRYSAVRRQGQIDKNEPEVKVLEYQTQQHRLFPFIARAYAFQFAGAETVKLYERDLHALTSGLKSVVTHQTGEGIEQARMACGGHGYSMASYISEIYGVAIGGVMLLQLARYLVKSAALVKSGKASQLGPLVAYLGARSEPTSLIDRVPNGGITEYIKTFQHIAKRQTLKAANKFFGLMENGEKREIAWNKSSVELNRASRLHTRLFIVEAFARRVNEIGDITIKEALSDLLHLHVNYELLDVATYALEDGFMSSTQLDYVRDQLYFYLQKIRPNAVSLLDSWEFSDRELRSVLGRRDGHVYENLFKWAKESPLNKTDVLPSVDTYLKPMMEKA
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Acyl-coenzyme A oxidase
publication title Structural characterization of acyl-CoA oxidases reveals a direct link between pheromone biosynthesis and metabolic state in Caenorhabditis elegans.
pubmed doi rcsb
source organism Caenorhabditis elegans
molecule tags Oxidoreductase
total genus 266
structure length 629
sequence length 668
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2016-05-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01756 ACOX Acyl-CoA oxidase
A PF02770 Acyl-CoA_dh_M Acyl-CoA dehydrogenase, middle domain
A PF14749 Acyl-CoA_ox_N Acyl-coenzyme A oxidase N-terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.540.10 Mainly Alpha Orthogonal Bundle Butyryl-Coa Dehydrogenase, subunit A; domain 1 Acyl-CoA dehydrogenase/oxidase, N-terminal domain 5k3gA01
1.20.140.10 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A; domain 3 Butyryl-CoA Dehydrogenase, subunit A, domain 3 5k3gA03
1.20.140.10 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A; domain 3 Butyryl-CoA Dehydrogenase, subunit A, domain 3 5k3gA04
2.40.110.10 Mainly Beta Beta Barrel Butyryl-CoA Dehydrogenase, subunit A; domain 2 Butyryl-CoA Dehydrogenase, subunit A, domain 2 5k3gA02
4ZXVA 3FCJA 3II9A 1UKWA 3GM6A 3X0YA 2E81A 4L3XA 1FS8A 4L3ZA 2JIFA 2ZAFA 2WBIA 2YYJA 3MDDA 3SWOA 2REHA 2JBRA 4KCFA 4W9UA 2YYIA 3NF4A 2EBAA 3D9FA 4RM7A 2DVLA 3EOMA 3LG1A 3MDEA 2RFQA 3D9DA 4L1FA 4L38A 4HR3A 5K3JA 4N5FA 3S7WA 4P13A 3OWMA 3X0XA 2YYLA 4Q17A 4OO2A 4Q0TA 4NXLA 2YYGA 5K3IA 3MXLA 2PG0A 3M9VA 4G5EA 4Q1OA 4X28A 1WS9A 3BNJA 3SF6A 1IVHA 2JBTA 1GU6A 2UXWA 1FS7A 4IV6A 1FS9A 2C12A 3OWAA 2R0NA 4XVXA 1BUCA 2RDZA 3RKHA 2D29A 3L1TA 1U8VA 3EONA 4Q5CA 3AFEA 2R0MA 2FONA 4M9AA 3MKHA 5K3GA 2ZO5A 3MMOA 2IX6A 3SCEA 3D9GA 3SXQA 3UU9A 4KTOA 1RX0A 1SIRA 3D6BA 3BNGA 1W07A 3D9EA 3BNFA 2JBSA 3MPIA 2DDHA 2E80A 1T9GA 4DOYA 2A1TA 3D1IA 3P4TA 2OT4A 3TTBA 1R2JA 2OR0A 3FO3A 4WJYA 3B96A 3AFFA 4X28C 3GQTA 1QDBA 2C0UA 4IRNA 4O5MA 3F29A 1EGDA 5K3HA 3HWCA 2YYKA 2CX9A 3BNHA 3TORA 1SIQA 3MPJA 3R7KA 3LGQA 4Q5BA 2VIGA 4JEKA 3GNCA 1JQIA 3OIBA 1IS2A 3UBRA 2YYMA 2RF7A 2IX5A 2VR0A 4U83A 1EGEA 2Z1QA 2J7AA 1OAHA 4L3YA 1EGCA 4Q4UA 4ZYJA 3PFDA 1UDYA
chains in the Genus database with same CATH superfamily
4ZXVA 1Y8NA 1X91A 3TZ2A 4KSFA 1XFUA 3FCJA 2EBFX 3II9A 5M4NA 1UKWA 3C46A 3GM6A 4QICA 4AKHA 3X0YA 1RJ4A 1X90A 4DZYA 2E81A 4L3XA 1FS8A 3X29A 3Q23A 2FP2A 2VF1A 1RP3A 2AO2A 4L3ZA 1LVCA 2JIFA 3U33A 2ZAFA 4H85A 3N0RA 2CJ8A 2WBIA 2YYJA 3MDDA 4FF4A 4G97A 3SWOA 4MPCA 2PO4A 2Q8GA 2REHA 2JBRA 4KCFA 4W9UA 1Y0VA 1K8TA 2YYIA 3D2RA 3NF4A 2Q8HA 2XS8A 2ZKJA 2Q8FA 4FF1A 2CJ5A 2EBAA 3D9FA 4RM7A 2DVLA 3C2PA 3VKGA 3EOMA 2CJ6A 3LG1A 3MDEA 1SC5A 2ZDYA 4LQQB 2RFQA 3D9DA 2R05A 5GJWE 1K90A 4L1FA 2EC5A 5BRMA 4L38A 2PNRA 4JIOA 2XQRB 4HR3A 5K3JA 1XFXA 4N5FA 3S7WA 4H7QA 3Q0AA 4P13A 1X8ZA 3X0XA 2YYLA 3OWMA 4Q17A 1PI1A 4OO2A 1XG2B 2CJ4A 4MP2A 4NXLA 4HKRA 1S26A 4MPNA 4Q0TA 2YYGA 5K3IA 4KS9A 3MXLA 2PG0A 5M4KA 4AI6A 1XFZA 3M9VA 2QR4A 4G5EA 4P79A 4Q1OA 4X28A 2CJ7A 4AKGA 1WS9A 3BNJA 3SF6A 5J6AA 1K93A 1IVHA 2JBTA 1GU6A 1SK6A 2YGWA 5M4MA 2UXWA 1FS7A 1RJ1A 4F0XA 4IV6A 4FF2A 1FS9A 2C12A 1XFWA 3OWAA 2R0NA 4XVXA 1BUCA 2RDZA 2E0AA 3RKHA 2D29A 3L1TA 5BRKA 3Q22A 3C3LA 3DJLA 1U8VA 3KMLA 4E02A 3EONA 4Q5CA 2Q8IA 3AFEA 2R0MA 2FONA 4M9AA 3MKHA 5K3GA 2GBBA 2ZO5A 2AZEA 3MMOA 2IX6A 2ZDXA 2OJQA 5B6BA 3SCEA 2FP1A 3D9GA 3SXQA 2R02A 4KTOA 1RX0A 3UU9A 4KSAA 1SIRA 3D6BA 3BNGA 2EBHX 2LFWA 4J1VA 1W07A 3D9EA 3BNFA 3VKHA 5EZ3A 3CE2A 5B5VA 2BU6A 4MP7A 2JBSA 1XFVA 1GKXA 3MPIA 2DDHA 2R03A 3TZ5A 1GKZA 1T9GA 4DOYA 2E80A 4H81A 4HKSA 4V26A 4E00A 4LQSB 2A1TA 3D1IA 3P4TA 2HJNA 3TZ0A 1JM6A 2OT4A 3TTBA 1R3BA 1R2JA 2OR0A 3FO3A 4V25A 4WJYA 3B96A 5GJVE 1XFYA 4FF3A 3AFFA 2OEXA 2OEVA 4FZ4A 4X28C 3GQTA 1QDBA 4E01A 4JIZA 2C0UA 4IRNA 2BU8A 2F6LA 4O5MA 3F29A 3TZ4A 1EGDA 5K3HA 3HWCA 1Y8PA 2YYKA 3CRKA 3VADA 4AKIA 2CX9A 3BNHA 3TORA 1SIQA 3MPJA 3R7KA 1Y8OA 3LGQA 4Q5BA 2VIGA 5B5WA 4JEKA 5J71A 3GNCA 1GJVA 1JQIA 3OIBA 2BU7A 2XS1A 1IS2A 3UBRA 3Q24A 2YYMA 2RF7A 2IX5A 1PK0A 2VR0A 4U83A 1EGEA 2BU5A 2Z1QA 2J7AA 2BTZA 1OAHA 4L3YA 4MPEA 1EGCA 2BU2A 5M4PA 4Q4UA 4ZYJA 3PFDA 1UDYA 3CRLA
chains in the Genus database with same CATH topology
4ZXVA 3FCJA 3II9A 1UKWA 3GM6A 3X0YA 2E81A 4L3XA 1FS8A 4L3ZA 2JIFA 2ZAFA 2WBIA 2YYJA 3MDDA 3SWOA 2REHA 2JBRA 4KCFA 4W9UA 2YYIA 3NF4A 2EBAA 3D9FA 4RM7A 2DVLA 3EOMA 3LG1A 3MDEA 2RFQA 3D9DA 4L1FA 4L38A 4HR3A 5K3JA 4N5FA 3S7WA 4P13A 3OWMA 3X0XA 2YYLA 4Q17A 4OO2A 4Q0TA 4NXLA 2YYGA 5K3IA 3MXLA 2PG0A 3M9VA 4G5EA 4Q1OA 4X28A 1WS9A 3BNJA 3SF6A 1IVHA 2JBTA 1GU6A 2UXWA 1FS7A 4IV6A 1FS9A 2C12A 3OWAA 2R0NA 4XVXA 1BUCA 2RDZA 3RKHA 2D29A 3L1TA 1U8VA 3EONA 4Q5CA 3AFEA 2R0MA 2FONA 4M9AA 3MKHA 5K3GA 2ZO5A 3MMOA 2IX6A 3SCEA 3D9GA 3SXQA 3UU9A 4KTOA 1RX0A 1SIRA 3D6BA 3BNGA 1W07A 3D9EA 3BNFA 2JBSA 3MPIA 2DDHA 2E80A 1T9GA 4DOYA 2A1TA 3D1IA 3P4TA 2OT4A 3TTBA 1R2JA 2OR0A 3FO3A 4WJYA 3B96A 3AFFA 4X28C 3GQTA 1QDBA 2C0UA 4IRNA 4O5MA 3F29A 1EGDA 5K3HA 3HWCA 2YYKA 2CX9A 3BNHA 3TORA 1SIQA 3MPJA 3R7KA 3LGQA 4Q5BA 2VIGA 4JEKA 3GNCA 1JQIA 3OIBA 1IS2A 3UBRA 2YYMA 2RF7A 2IX5A 2VR0A 4U83A 1EGEA 2Z1QA 2J7AA 1OAHA 4L3YA 1EGCA 4Q4UA 4ZYJA 3PFDA 1UDYA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4ZXV A;  3FCJ A;  3II9 A;  1UKW A;  3GM6 A;  3X0Y A;  2E81 A;  4L3X A;  1FS8 A;  4L3Z A;  2JIF A;  2ZAF A;  2WBI A;  2YYJ A;  3MDD A;  3SWO A;  2REH A;  2JBR A;  4KCF A;  4W9U A;  2YYI A;  3NF4 A;  2EBA A;  3D9F A;  4RM7 A;  2DVL A;  3EOM A;  3LG1 A;  3MDE A;  2RFQ A;  3D9D A;  4L1F A;  4L38 A;  4HR3 A;  5K3J A;  4N5F A;  3S7W A;  4P13 A;  3OWM A;  3X0X A;  2YYL A;  4Q17 A;  4OO2 A;  4Q0T A;  4NXL A;  2YYG A;  5K3I A;  3MXL A;  2PG0 A;  3M9V A;  4G5E A;  4Q1O A;  4X28 A;  1WS9 A;  3BNJ A;  3SF6 A;  1IVH A;  2JBT A;  1GU6 A;  2UXW A;  1FS7 A;  4IV6 A;  1FS9 A;  2C12 A;  3OWA A;  2R0N A;  4XVX A;  1BUC A;  2RDZ A;  3RKH A;  2D29 A;  3L1T A;  1U8V A;  3EON A;  4Q5C A;  3AFE A;  2R0M A;  2FON A;  4M9A A;  3MKH A;  5K3G A;  2ZO5 A;  3MMO A;  2IX6 A;  3SCE A;  3D9G A;  3SXQ A;  3UU9 A;  4KTO A;  1RX0 A;  1SIR A;  3D6B A;  3BNG A;  1W07 A;  3D9E A;  3BNF A;  2JBS A;  3MPI A;  2DDH A;  2E80 A;  1T9G A;  4DOY A;  2A1T A;  3D1I A;  3P4T A;  2OT4 A;  3TTB A;  1R2J A;  2OR0 A;  3FO3 A;  4WJY A;  3B96 A;  3AFF A;  4X28 C;  3GQT A;  1QDB A;  2C0U A;  4IRN A;  4O5M A;  3F29 A;  1EGD A;  5K3H A;  3HWC A;  2YYK A;  2CX9 A;  3BNH A;  3TOR A;  1SIQ A;  3MPJ A;  3R7K A;  3LGQ A;  4Q5B A;  2VIG A;  4JEK A;  3GNC A;  1JQI A;  3OIB A;  1IS2 A;  3UBR A;  2YYM A;  2RF7 A;  2IX5 A;  2VR0 A;  4U83 A;  1EGE A;  2Z1Q A;  2J7A A;  1OAH A;  4L3Y A;  1EGC A;  4Q4U A;  4ZYJ A;  3PFD A;  1UDY A; 
#chains in the Genus database with same CATH topology
 4ZXV A;  1Y8N A;  1X91 A;  3TZ2 A;  4KSF A;  1XFU A;  3FCJ A;  2EBF X;  3II9 A;  5M4N A;  1UKW A;  3C46 A;  3GM6 A;  4QIC A;  4AKH A;  3X0Y A;  1RJ4 A;  1X90 A;  4DZY A;  2E81 A;  4L3X A;  1FS8 A;  3X29 A;  3Q23 A;  2FP2 A;  2VF1 A;  1RP3 A;  2AO2 A;  4L3Z A;  1LVC A;  2JIF A;  3U33 A;  2ZAF A;  4H85 A;  3N0R A;  2CJ8 A;  2WBI A;  2YYJ A;  3MDD A;  4FF4 A;  4G97 A;  3SWO A;  4MPC A;  2PO4 A;  2Q8G A;  2REH A;  2JBR A;  4KCF A;  4W9U A;  1Y0V A;  1K8T A;  2YYI A;  3D2R A;  3NF4 A;  2Q8H A;  2XS8 A;  2ZKJ A;  2Q8F A;  4FF1 A;  2CJ5 A;  2EBA A;  3D9F A;  4RM7 A;  2DVL A;  3C2P A;  3VKG A;  3EOM A;  2CJ6 A;  3LG1 A;  3MDE A;  1SC5 A;  2ZDY A;  4LQQ B;  2RFQ A;  3D9D A;  2R05 A;  5GJW E;  1K90 A;  4L1F A;  2EC5 A;  5BRM A;  4L38 A;  2PNR A;  4JIO A;  2XQR B;  4HR3 A;  5K3J A;  1XFX A;  4N5F A;  3S7W A;  4H7Q A;  3Q0A A;  4P13 A;  1X8Z A;  3X0X A;  2YYL A;  3OWM A;  4Q17 A;  1PI1 A;  4OO2 A;  1XG2 B;  2CJ4 A;  4MP2 A;  4NXL A;  4HKR A;  1S26 A;  4MPN A;  4Q0T A;  2YYG A;  5K3I A;  4KS9 A;  3MXL A;  2PG0 A;  5M4K A;  4AI6 A;  1XFZ A;  3M9V A;  2QR4 A;  4G5E A;  4P79 A;  4Q1O A;  4X28 A;  2CJ7 A;  4AKG A;  1WS9 A;  3BNJ A;  3SF6 A;  5J6A A;  1K93 A;  1IVH A;  2JBT A;  1GU6 A;  1SK6 A;  2YGW A;  5M4M A;  2UXW A;  1FS7 A;  1RJ1 A;  4F0X A;  4IV6 A;  4FF2 A;  1FS9 A;  2C12 A;  1XFW A;  3OWA A;  2R0N A;  4XVX A;  1BUC A;  2RDZ A;  2E0A A;  3RKH A;  2D29 A;  3L1T A;  5BRK A;  3Q22 A;  3C3L A;  3DJL A;  1U8V A;  3KML A;  4E02 A;  3EON A;  4Q5C A;  2Q8I A;  3AFE A;  2R0M A;  2FON A;  4M9A A;  3MKH A;  5K3G A;  2GBB A;  2ZO5 A;  2AZE A;  3MMO A;  2IX6 A;  2ZDX A;  2OJQ A;  5B6B A;  3SCE A;  2FP1 A;  3D9G A;  3SXQ A;  2R02 A;  4KTO A;  1RX0 A;  3UU9 A;  4KSA A;  1SIR A;  3D6B A;  3BNG A;  2EBH X;  2LFW A;  4J1V A;  1W07 A;  3D9E A;  3BNF A;  3VKH A;  5EZ3 A;  3CE2 A;  5B5V A;  2BU6 A;  4MP7 A;  2JBS A;  1XFV A;  1GKX A;  3MPI A;  2DDH A;  2R03 A;  3TZ5 A;  1GKZ A;  1T9G A;  4DOY A;  2E80 A;  4H81 A;  4HKS A;  4V26 A;  4E00 A;  4LQS B;  2A1T A;  3D1I A;  3P4T A;  2HJN A;  3TZ0 A;  1JM6 A;  2OT4 A;  3TTB A;  1R3B A;  1R2J A;  2OR0 A;  3FO3 A;  4V25 A;  4WJY A;  3B96 A;  5GJV E;  1XFY A;  4FF3 A;  3AFF A;  2OEX A;  2OEV A;  4FZ4 A;  4X28 C;  3GQT A;  1QDB A;  4E01 A;  4JIZ A;  2C0U A;  4IRN A;  2BU8 A;  2F6L A;  4O5M A;  3F29 A;  3TZ4 A;  1EGD A;  5K3H A;  3HWC A;  1Y8P A;  2YYK A;  3CRK A;  3VAD A;  4AKI A;  2CX9 A;  3BNH A;  3TOR A;  1SIQ A;  3MPJ A;  3R7K A;  1Y8O A;  3LGQ A;  4Q5B A;  2VIG A;  5B5W A;  4JEK A;  5J71 A;  3GNC A;  1GJV A;  1JQI A;  3OIB A;  2BU7 A;  2XS1 A;  1IS2 A;  3UBR A;  3Q24 A;  2YYM A;  2RF7 A;  2IX5 A;  1PK0 A;  2VR0 A;  4U83 A;  1EGE A;  2BU5 A;  2Z1Q A;  2J7A A;  2BTZ A;  1OAH A;  4L3Y A;  4MPE A;  1EGC A;  2BU2 A;  5M4P A;  4Q4U A;  4ZYJ A;  3PFD A;  1UDY A;  3CRL A; 
#chains in the Genus database with same CATH homology
 4ZXV A;  3FCJ A;  3II9 A;  1UKW A;  3GM6 A;  3X0Y A;  2E81 A;  4L3X A;  1FS8 A;  4L3Z A;  2JIF A;  2ZAF A;  2WBI A;  2YYJ A;  3MDD A;  3SWO A;  2REH A;  2JBR A;  4KCF A;  4W9U A;  2YYI A;  3NF4 A;  2EBA A;  3D9F A;  4RM7 A;  2DVL A;  3EOM A;  3LG1 A;  3MDE A;  2RFQ A;  3D9D A;  4L1F A;  4L38 A;  4HR3 A;  5K3J A;  4N5F A;  3S7W A;  4P13 A;  3OWM A;  3X0X A;  2YYL A;  4Q17 A;  4OO2 A;  4Q0T A;  4NXL A;  2YYG A;  5K3I A;  3MXL A;  2PG0 A;  3M9V A;  4G5E A;  4Q1O A;  4X28 A;  1WS9 A;  3BNJ A;  3SF6 A;  1IVH A;  2JBT A;  1GU6 A;  2UXW A;  1FS7 A;  4IV6 A;  1FS9 A;  2C12 A;  3OWA A;  2R0N A;  4XVX A;  1BUC A;  2RDZ A;  3RKH A;  2D29 A;  3L1T A;  1U8V A;  3EON A;  4Q5C A;  3AFE A;  2R0M A;  2FON A;  4M9A A;  3MKH A;  5K3G A;  2ZO5 A;  3MMO A;  2IX6 A;  3SCE A;  3D9G A;  3SXQ A;  3UU9 A;  4KTO A;  1RX0 A;  1SIR A;  3D6B A;  3BNG A;  1W07 A;  3D9E A;  3BNF A;  2JBS A;  3MPI A;  2DDH A;  2E80 A;  1T9G A;  4DOY A;  2A1T A;  3D1I A;  3P4T A;  2OT4 A;  3TTB A;  1R2J A;  2OR0 A;  3FO3 A;  4WJY A;  3B96 A;  3AFF A;  4X28 C;  3GQT A;  1QDB A;  2C0U A;  4IRN A;  4O5M A;  3F29 A;  1EGD A;  5K3H A;  3HWC A;  2YYK A;  2CX9 A;  3BNH A;  3TOR A;  1SIQ A;  3MPJ A;  3R7K A;  3LGQ A;  4Q5B A;  2VIG A;  4JEK A;  3GNC A;  1JQI A;  3OIB A;  1IS2 A;  3UBR A;  2YYM A;  2RF7 A;  2IX5 A;  2VR0 A;  4U83 A;  1EGE A;  2Z1Q A;  2J7A A;  1OAH A;  4L3Y A;  1EGC A;  4Q4U A;  4ZYJ A;  3PFD A;  1UDY A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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