5K3GA

Crystals structure of acyl-coa oxidase-1 in caenorhabditis elegans, apo form-i
Total Genus 266
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
266
sequence length
668
structure length
629
Chain Sequence
VHLNKTIQEGDNPDLTAERLTATFDTHAMAAQIYGGEMRARRRREITAKLAEIPELHDSMPLPYMTREEKIMESARKLTVLTQRMSEIIDPTDAGELYHLNNEVLGIEGNPMALHGVMFIPALNAQASDEQQAKWLIRALRREIIGTYAQTEMGHGTNLQNLETTATYDIGTQEFVLHTPKITALKWWPGNLGKSSNYAVVVAHMYIKGKNFGPHTFMVPLRDEKTHKPLPGITIGDIGPKMAYNIVDNGFLGFNNYRIPRTNLLMRHTKVEADGTYIYMLTGQAIMLSYALNIATRYSAVRRQGQIDKNEPEVKVLEYQTQQHRLFPFIARAYAFQFAGAETVKLYERDLHALTSGLKSVVTHQTGEGIEQARMACGGHGYSMASYISEIYGVAIGGVMLLQLARYLVKSAALVKSGKASQLGPLVAYLGARSEPTSLIDRVPNGGITEYIKTFQHIAKRQTLKAANKFFGLMENGEKREIAWNKSSVELNRASRLHTRLFIVEAFARRVNEIGDITIKEALSDLLHLHVNYELLDVATYALEDGFMSSTQLDYVRDQLYFYLQKIRPNAVSLLDSWEFSDRELRSVLGRRDGHVYENLFKWAKESPLNKTDVLPSVDTYLKPMMEKA
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
molecule keywords Acyl-coenzyme A oxidase
publication title Structural characterization of acyl-CoA oxidases reveals a direct link between pheromone biosynthesis and metabolic state in Caenorhabditis elegans.
pubmed doi rcsb
source organism Caenorhabditis elegans
total genus 266
structure length 629
sequence length 668
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2016-05-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01756 ACOX Acyl-CoA oxidase
A PF02770 Acyl-CoA_dh_M Acyl-CoA dehydrogenase, middle domain
A PF14749 Acyl-CoA_ox_N Acyl-coenzyme A oxidase N-terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.540.10 Mainly Alpha Orthogonal Bundle Butyryl-Coa Dehydrogenase, subunit A; domain 1 Acyl-CoA dehydrogenase/oxidase, N-terminal domain 5k3gA01
1.20.140.10 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A; domain 3 Butyryl-CoA Dehydrogenase, subunit A, domain 3 5k3gA03
1.20.140.10 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A; domain 3 Butyryl-CoA Dehydrogenase, subunit A, domain 3 5k3gA04
2.40.110.10 Mainly Beta Beta Barrel Butyryl-CoA Dehydrogenase, subunit A; domain 2 Butyryl-CoA Dehydrogenase, subunit A, domain 2 5k3gA02
3MDEA 4X28C 3R7KA 4P13A 3BNJA 1SIRA 3TTBA 2ZAFA 3SWOA 1BUCA 2JBRA 2RDZA 2R0NA 2YYLA 3AFEA 3GNCA 2D29A 4KTOA 3UBRA 3B96A 2YYIA 1U8VA 2UXWA 2IX6A 3NF4A 3GM6A 3F29A 1EGDA 3TORA 2RF7A 1RX0A 4RM7A 3SCEA 3BNFA 4M9AA 4JEKA 4NXLA 2VR0A 3D6BA 3PFDA 2YYJA 3BNHA 4Q5BA 1UKWA 4X28A 5K3HA 3S7WA 3SXQA 1FS8A 3AFFA 2E80A 3MDDA 1IVHA 1FS9A 4G5EA 3LGQA 2Z1QA 3UU9A 3BNGA 5K3JA 4OO2A 3MMOA 3EOMA 1OAHA 4WJYA 1T9GA 4L3ZA 4ZYJA 2DDHA 2EBAA 4DOYA 3FO3A 3X0XA 4W9UA 1WS9A 2WBIA 2PG0A 2RFQA 4IV6A 4ZXVA 3MXLA 5K3IA 3X0YA 2YYMA 1W07A 1R2JA 2YYKA 3D9GA 3MPIA 2IX5A 4KCFA 1IS2A 3D1IA 3SF6A 2R0MA 4L3YA 3D9EA 4Q4UA 3D9FA 3OWMA 3M9VA 3MKHA 2FONA 3OIBA 2JBSA 2REHA 3FCJA 2OT4A 4O5MA 4HR3A 3LG1A 3L1TA 2CX9A 3D9DA 3P4TA 2VIGA 3GQTA 4Q1OA 3II9A 1QDBA 5K3GA 4IRNA 4Q0TA 4Q5CA 4U83A 2J7AA 4L38A 2OR0A 1UDYA 1SIQA 2E81A 3MPJA 3RKHA 2YYGA 4Q17A 1JQIA 2JIFA 1EGCA 1FS7A 3HWCA 3OWAA 4L3XA 2JBTA 2A1TA 4XVXA 1EGEA 1GU6A 2C0UA 3EONA 4L1FA 2DVLA 2ZO5A 2C12A 4N5FA
chains in the Genus database with same CATH superfamily
3MDEA 4X28C 3R7KA 4P13A 3BNJA 4H85A 1SIRA 2BU7A 1XG2B 2QR4A 3TTBA 2ZAFA 3SWOA 1BUCA 2JBRA 2RDZA 3TZ0A 3VKGA 2GBBA 3VKHA 2R0NA 2YYLA 3AFEA 3X29A 3GNCA 2D29A 4KTOA 4J1VA 3UBRA 3B96A 2YYIA 4P79A 1R3BA 3Q0AA 1U8VA 2UXWA 2BTZA 2IX6A 3NF4A 3GM6A 3VADA 3F29A 1EGDA 3TORA 4MP7A 2RF7A 4V25A 1RX0A 4RM7A 3N0RA 4KSFA 4LQSB 3SCEA 1PK0A 2OEXA 1RJ4A 2BU8A 3BNFA 3TZ5A 4M9AA 4JEKA 4NXLA 1K8TA 2CJ7A 2VR0A 3D6BA 3PFDA 2BU5A 2VF1A 2YYJA 1X8ZA 1UKWA 4X28A 3BNHA 4G97A 2FP1A 5K3HA 2CJ8A 2OEVA 1FS8A 3AFFA 2ZDXA 3S7WA 1Y8NA 1Y0VA 2E80A 3SXQA 3MDDA 1X91A 1IVHA 1FS9A 5BRMA 4G5EA 3CRLA 4JIOA 3LGQA 2Z1QA 3UU9A 3BNGA 4FF1A 2HJNA 1LVCA 5K3JA 1XFZA 4OO2A 3D2RA 2OJQA 3CE2A 3MMOA 4QICA 2Q8HA 3EOMA 2XS8A 2EC5A 1OAHA 4WJYA 1T9GA 1JM6A 4L3ZA 4DZYA 4ZYJA 2DDHA 2EBAA 1K93A 1XFWA 3Q23A 1XFYA 4V26A 4DOYA 3KMLA 3FO3A 3X0XA 1GKXA 4W9UA 2F6LA 4E02A 1WS9A 2WBIA 1K90A 4F0XA 2PG0A 2RFQA 3CRKA 4IV6A 2AZEA 2PNRA 2ZKJA 4ZXVA 3MXLA 5K3IA 3X0YA 4MPCA 2YGWA 1GJVA 2YYMA 2Q8IA 3C2PA 4FF3A 1W07A 1R2JA 2YYKA 2CJ4A 5GJWE 3D9GA 2AO2A 3MPIA 1XFVA 2IX5A 1X90A 3TZ4A 5M4NA 5M4PA 4KCFA 1IS2A 1XFUA 5BRKA 4MPNA 2CJ5A 3D1IA 3SF6A 2R0MA 4AKIA 4L3YA 4FF2A 4LQQB 3D9EA 2Q8FA 4MP2A 4Q4UA 1PI1A 3D9FA 2BU2A 3OWMA 3M9VA 4FZ4A 4HKRA 3MKHA 2FONA 3OIBA 2JBSA 2REHA 3FCJA 1RJ1A 1SC5A 5GJVE 4H81A 4O5MA 1S26A 4HR3A 2R02A 3LG1A 3L1TA 4JIZA 2CX9A 3D9DA 3P4TA 2VIGA 3GQTA 4Q1OA 3II9A 1QDBA 4AKGA 2LFWA 4E01A 3Q24A 5K3GA 3C46A 4IRNA 2PO4A 4Q0TA 4Q5CA 4U83A 2J7AA 5J6AA 4L38A 2OR0A 3C3LA 5B5WA 5B6BA 1UDYA 1SIQA 2E81A 3MPJA 2EBFX 2ZDYA 2YYGA 4Q17A 3RKHA 5M4KA 4FF4A 1GKZA 4AKHA 5M4MA 1RP3A 1JQIA 2JIFA 1EGCA 2R03A 3U33A 1Y8OA 1FS7A 2XS1A 5B5VA 3TZ2A 2R05A 1Y8PA 3HWCA 5J71A 3OWAA 4L3XA 2JBTA 4MPEA 3Q22A 2A1TA 4XVXA 3DJLA 1EGEA 2FP2A 2BU6A 2CJ6A 1GU6A 4HKSA 4H7QA 2EBHX 4AI6A 2C0UA 3EONA 4L1FA 2DVLA 1SK6A 5EZ3A 2ZO5A 1XFXA 2E0AA 4E00A 2C12A 4KSAA 2OT4A 4KS9A 2Q8GA 4N5FA 2XQRB 4Q5BA
chains in the Genus database with same CATH topology
3MDEA 4X28C 3R7KA 4P13A 3BNJA 1SIRA 3TTBA 2ZAFA 3SWOA 1BUCA 2JBRA 2RDZA 2R0NA 2YYLA 3AFEA 3GNCA 2D29A 4KTOA 3UBRA 3B96A 2YYIA 1U8VA 2UXWA 2IX6A 3NF4A 3GM6A 3F29A 1EGDA 3TORA 2RF7A 1RX0A 4RM7A 3SCEA 3BNFA 4M9AA 4JEKA 4NXLA 2VR0A 3D6BA 3PFDA 2YYJA 3BNHA 4Q5BA 1UKWA 4X28A 5K3HA 3S7WA 3SXQA 1FS8A 3AFFA 2E80A 3MDDA 1IVHA 1FS9A 4G5EA 3LGQA 2Z1QA 3UU9A 3BNGA 5K3JA 4OO2A 3MMOA 3EOMA 1OAHA 4WJYA 1T9GA 4L3ZA 4ZYJA 2DDHA 2EBAA 4DOYA 3FO3A 3X0XA 4W9UA 1WS9A 2WBIA 2PG0A 2RFQA 4IV6A 4ZXVA 3MXLA 5K3IA 3X0YA 2YYMA 1W07A 1R2JA 2YYKA 3D9GA 3MPIA 2IX5A 4KCFA 1IS2A 3D1IA 3SF6A 2R0MA 4L3YA 3D9EA 4Q4UA 3D9FA 3OWMA 3M9VA 3MKHA 2FONA 3OIBA 2JBSA 2REHA 3FCJA 2OT4A 4O5MA 4HR3A 3LG1A 3L1TA 2CX9A 3D9DA 3P4TA 2VIGA 3GQTA 4Q1OA 3II9A 1QDBA 5K3GA 4IRNA 4Q0TA 4Q5CA 4U83A 2J7AA 4L38A 2OR0A 1UDYA 1SIQA 2E81A 3MPJA 3RKHA 2YYGA 4Q17A 1JQIA 2JIFA 1EGCA 1FS7A 3HWCA 3OWAA 4L3XA 2JBTA 2A1TA 4XVXA 1EGEA 1GU6A 2C0UA 3EONA 4L1FA 2DVLA 2ZO5A 2C12A 4N5FA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3MDE A;  4X28 C;  3R7K A;  4P13 A;  3BNJ A;  1SIR A;  3TTB A;  2ZAF A;  3SWO A;  1BUC A;  2JBR A;  2RDZ A;  2R0N A;  2YYL A;  3AFE A;  3GNC A;  2D29 A;  4KTO A;  3UBR A;  3B96 A;  2YYI A;  1U8V A;  2UXW A;  2IX6 A;  3NF4 A;  3GM6 A;  3F29 A;  1EGD A;  3TOR A;  2RF7 A;  1RX0 A;  4RM7 A;  3SCE A;  3BNF A;  4M9A A;  4JEK A;  4NXL A;  2VR0 A;  3D6B A;  3PFD A;  2YYJ A;  3BNH A;  4Q5B A;  1UKW A;  4X28 A;  5K3H A;  3S7W A;  3SXQ A;  1FS8 A;  3AFF A;  2E80 A;  3MDD A;  1IVH A;  1FS9 A;  4G5E A;  3LGQ A;  2Z1Q A;  3UU9 A;  3BNG A;  5K3J A;  4OO2 A;  3MMO A;  3EOM A;  1OAH A;  4WJY A;  1T9G A;  4L3Z A;  4ZYJ A;  2DDH A;  2EBA A;  4DOY A;  3FO3 A;  3X0X A;  4W9U A;  1WS9 A;  2WBI A;  2PG0 A;  2RFQ A;  4IV6 A;  4ZXV A;  3MXL A;  5K3I A;  3X0Y A;  2YYM A;  1W07 A;  1R2J A;  2YYK A;  3D9G A;  3MPI A;  2IX5 A;  4KCF A;  1IS2 A;  3D1I A;  3SF6 A;  2R0M A;  4L3Y A;  3D9E A;  4Q4U A;  3D9F A;  3OWM A;  3M9V A;  3MKH A;  2FON A;  3OIB A;  2JBS A;  2REH A;  3FCJ A;  2OT4 A;  4O5M A;  4HR3 A;  3LG1 A;  3L1T A;  2CX9 A;  3D9D A;  3P4T A;  2VIG A;  3GQT A;  4Q1O A;  3II9 A;  1QDB A;  5K3G A;  4IRN A;  4Q0T A;  4Q5C A;  4U83 A;  2J7A A;  4L38 A;  2OR0 A;  1UDY A;  1SIQ A;  2E81 A;  3MPJ A;  3RKH A;  2YYG A;  4Q17 A;  1JQI A;  2JIF A;  1EGC A;  1FS7 A;  3HWC A;  3OWA A;  4L3X A;  2JBT A;  2A1T A;  4XVX A;  1EGE A;  1GU6 A;  2C0U A;  3EON A;  4L1F A;  2DVL A;  2ZO5 A;  2C12 A;  4N5F A; 
#chains in the Genus database with same CATH topology
 3MDE A;  4X28 C;  3R7K A;  4P13 A;  3BNJ A;  4H85 A;  1SIR A;  2BU7 A;  1XG2 B;  2QR4 A;  3TTB A;  2ZAF A;  3SWO A;  1BUC A;  2JBR A;  2RDZ A;  3TZ0 A;  3VKG A;  2GBB A;  3VKH A;  2R0N A;  2YYL A;  3AFE A;  3X29 A;  3GNC A;  2D29 A;  4KTO A;  4J1V A;  3UBR A;  3B96 A;  2YYI A;  4P79 A;  1R3B A;  3Q0A A;  1U8V A;  2UXW A;  2BTZ A;  2IX6 A;  3NF4 A;  3GM6 A;  3VAD A;  3F29 A;  1EGD A;  3TOR A;  4MP7 A;  2RF7 A;  4V25 A;  1RX0 A;  4RM7 A;  3N0R A;  4KSF A;  4LQS B;  3SCE A;  1PK0 A;  2OEX A;  1RJ4 A;  2BU8 A;  3BNF A;  3TZ5 A;  4M9A A;  4JEK A;  4NXL A;  1K8T A;  2CJ7 A;  2VR0 A;  3D6B A;  3PFD A;  2BU5 A;  2VF1 A;  2YYJ A;  1X8Z A;  1UKW A;  4X28 A;  3BNH A;  4G97 A;  2FP1 A;  5K3H A;  2CJ8 A;  2OEV A;  1FS8 A;  3AFF A;  2ZDX A;  3S7W A;  1Y8N A;  1Y0V A;  2E80 A;  3SXQ A;  3MDD A;  1X91 A;  1IVH A;  1FS9 A;  5BRM A;  4G5E A;  3CRL A;  4JIO A;  3LGQ A;  2Z1Q A;  3UU9 A;  3BNG A;  4FF1 A;  2HJN A;  1LVC A;  5K3J A;  1XFZ A;  4OO2 A;  3D2R A;  2OJQ A;  3CE2 A;  3MMO A;  4QIC A;  2Q8H A;  3EOM A;  2XS8 A;  2EC5 A;  1OAH A;  4WJY A;  1T9G A;  1JM6 A;  4L3Z A;  4DZY A;  4ZYJ A;  2DDH A;  2EBA A;  1K93 A;  1XFW A;  3Q23 A;  1XFY A;  4V26 A;  4DOY A;  3KML A;  3FO3 A;  3X0X A;  1GKX A;  4W9U A;  2F6L A;  4E02 A;  1WS9 A;  2WBI A;  1K90 A;  4F0X A;  2PG0 A;  2RFQ A;  3CRK A;  4IV6 A;  2AZE A;  2PNR A;  2ZKJ A;  4ZXV A;  3MXL A;  5K3I A;  3X0Y A;  4MPC A;  2YGW A;  1GJV A;  2YYM A;  2Q8I A;  3C2P A;  4FF3 A;  1W07 A;  1R2J A;  2YYK A;  2CJ4 A;  5GJW E;  3D9G A;  2AO2 A;  3MPI A;  1XFV A;  2IX5 A;  1X90 A;  3TZ4 A;  5M4N A;  5M4P A;  4KCF A;  1IS2 A;  1XFU A;  5BRK A;  4MPN A;  2CJ5 A;  3D1I A;  3SF6 A;  2R0M A;  4AKI A;  4L3Y A;  4FF2 A;  4LQQ B;  3D9E A;  2Q8F A;  4MP2 A;  4Q4U A;  1PI1 A;  3D9F A;  2BU2 A;  3OWM A;  3M9V A;  4FZ4 A;  4HKR A;  3MKH A;  2FON A;  3OIB A;  2JBS A;  2REH A;  3FCJ A;  1RJ1 A;  1SC5 A;  5GJV E;  4H81 A;  4O5M A;  1S26 A;  4HR3 A;  2R02 A;  3LG1 A;  3L1T A;  4JIZ A;  2CX9 A;  3D9D A;  3P4T A;  2VIG A;  3GQT A;  4Q1O A;  3II9 A;  1QDB A;  4AKG A;  2LFW A;  4E01 A;  3Q24 A;  5K3G A;  3C46 A;  4IRN A;  2PO4 A;  4Q0T A;  4Q5C A;  4U83 A;  2J7A A;  5J6A A;  4L38 A;  2OR0 A;  3C3L A;  5B5W A;  5B6B A;  1UDY A;  1SIQ A;  2E81 A;  3MPJ A;  2EBF X;  2ZDY A;  2YYG A;  4Q17 A;  3RKH A;  5M4K A;  4FF4 A;  1GKZ A;  4AKH A;  5M4M A;  1RP3 A;  1JQI A;  2JIF A;  1EGC A;  2R03 A;  3U33 A;  1Y8O A;  1FS7 A;  2XS1 A;  5B5V A;  3TZ2 A;  2R05 A;  1Y8P A;  3HWC A;  5J71 A;  3OWA A;  4L3X A;  2JBT A;  4MPE A;  3Q22 A;  2A1T A;  4XVX A;  3DJL A;  1EGE A;  2FP2 A;  2BU6 A;  2CJ6 A;  1GU6 A;  4HKS A;  4H7Q A;  2EBH X;  4AI6 A;  2C0U A;  3EON A;  4L1F A;  2DVL A;  1SK6 A;  5EZ3 A;  2ZO5 A;  1XFX A;  2E0A A;  4E00 A;  2C12 A;  4KSA A;  2OT4 A;  4KS9 A;  2Q8G A;  4N5F A;  2XQR B;  4Q5B A; 
#chains in the Genus database with same CATH homology
 3MDE A;  4X28 C;  3R7K A;  4P13 A;  3BNJ A;  1SIR A;  3TTB A;  2ZAF A;  3SWO A;  1BUC A;  2JBR A;  2RDZ A;  2R0N A;  2YYL A;  3AFE A;  3GNC A;  2D29 A;  4KTO A;  3UBR A;  3B96 A;  2YYI A;  1U8V A;  2UXW A;  2IX6 A;  3NF4 A;  3GM6 A;  3F29 A;  1EGD A;  3TOR A;  2RF7 A;  1RX0 A;  4RM7 A;  3SCE A;  3BNF A;  4M9A A;  4JEK A;  4NXL A;  2VR0 A;  3D6B A;  3PFD A;  2YYJ A;  3BNH A;  4Q5B A;  1UKW A;  4X28 A;  5K3H A;  3S7W A;  3SXQ A;  1FS8 A;  3AFF A;  2E80 A;  3MDD A;  1IVH A;  1FS9 A;  4G5E A;  3LGQ A;  2Z1Q A;  3UU9 A;  3BNG A;  5K3J A;  4OO2 A;  3MMO A;  3EOM A;  1OAH A;  4WJY A;  1T9G A;  4L3Z A;  4ZYJ A;  2DDH A;  2EBA A;  4DOY A;  3FO3 A;  3X0X A;  4W9U A;  1WS9 A;  2WBI A;  2PG0 A;  2RFQ A;  4IV6 A;  4ZXV A;  3MXL A;  5K3I A;  3X0Y A;  2YYM A;  1W07 A;  1R2J A;  2YYK A;  3D9G A;  3MPI A;  2IX5 A;  4KCF A;  1IS2 A;  3D1I A;  3SF6 A;  2R0M A;  4L3Y A;  3D9E A;  4Q4U A;  3D9F A;  3OWM A;  3M9V A;  3MKH A;  2FON A;  3OIB A;  2JBS A;  2REH A;  3FCJ A;  2OT4 A;  4O5M A;  4HR3 A;  3LG1 A;  3L1T A;  2CX9 A;  3D9D A;  3P4T A;  2VIG A;  3GQT A;  4Q1O A;  3II9 A;  1QDB A;  5K3G A;  4IRN A;  4Q0T A;  4Q5C A;  4U83 A;  2J7A A;  4L38 A;  2OR0 A;  1UDY A;  1SIQ A;  2E81 A;  3MPJ A;  3RKH A;  2YYG A;  4Q17 A;  1JQI A;  2JIF A;  1EGC A;  1FS7 A;  3HWC A;  3OWA A;  4L3X A;  2JBT A;  2A1T A;  4XVX A;  1EGE A;  1GU6 A;  2C0U A;  3EON A;  4L1F A;  2DVL A;  2ZO5 A;  2C12 A;  4N5F A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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