3R7KA

Crystal structure of a probable acyl coa dehydrogenase from mycobacterium abscessus atcc 19977 / dsm 44196
Total Genus 141
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
141
sequence length
378
structure length
378
Chain Sequence
PEAWTTPERRALSQMARSFVEREIAPKLAEWEHVGEIPRDLHLNAAEVGLLGIGFPEEVGGSGGNAIDSALVTEAILAAGGSTGVCAALFTHGIALPHIAANGSDALIERYVRPTLAGKMIGSLGVTEPGAGSDVANLRTRAVREGDTYVVNGAKTFITSGVRADFVTTAVRTGGPGYGGVSLLVIDKNSPGFEVSRRLDKMGWRCSDTAELSFVDVRVPADNLVGAENSGFLQIMQQFQAERLGIAVQAYATAGRALDLAKSWARERETFGRPLTGRQIIRHKLAEMARQVDVACTYTRAVMQRWLAGEDVVAEVSMAKNTAVYACDYVVNEAVQIFGGMGYMRESEIERHYRDCRILGIGGGTNEIMNEVIAKRIG
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule keywords Probable acyl CoA dehydrogenase
publication title Increasing the structural coverage of tuberculosis drug targets.
pubmed doi rcsb
source organism Mycobacterium abscessus
molecule tags Oxidoreductase
total genus 141
structure length 378
sequence length 378
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2011-03-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00441 Acyl-CoA_dh_1 Acyl-CoA dehydrogenase, C-terminal domain
A PF02770 Acyl-CoA_dh_M Acyl-CoA dehydrogenase, middle domain
A PF02771 Acyl-CoA_dh_N Acyl-CoA dehydrogenase, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.540.10 Mainly Alpha Orthogonal Bundle Butyryl-Coa Dehydrogenase, subunit A; domain 1 Acyl-CoA dehydrogenase/oxidase, N-terminal domain 3r7kA01
1.20.140.10 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A; domain 3 Butyryl-CoA Dehydrogenase, subunit A, domain 3 3r7kA03
2.40.110.10 Mainly Beta Beta Barrel Butyryl-CoA Dehydrogenase, subunit A; domain 2 Butyryl-CoA Dehydrogenase, subunit A, domain 2 3r7kA02
4HR3A 4L3YA 4X28A 3TTBA 3D9GA 4JEKA 3SCEA 2EBAA 4Q1OA 2YYLA 2A1TA 3BNFA 4L3XA 2PG0A 1FS7A 2E81A 4OO2A 4N5FA 3D6BA 5K3JA 1W07A 2ZAFA 4U83A 3D1IA 2JBSA 2DVLA 1EGCA 3EONA 4L3ZA 2FONA 2YYGA 4Q0TA 1IS2A 4KCFA 3EOMA 2OT4A 3PFDA 3MKHA 1RX0A 1GU6A 3MMOA 2C0UA 4X28C 1FS8A 4O5MA 4ZYJA 4NXLA 3D9DA 3FCJA 1OAHA 4L1FA 3BNGA 3X0XA 3LGQA 3MDEA 1T9GA 3BNJA 5K3GA 3OWAA 3S7WA 2CX9A 2OR0A 1QDBA 2E80A 2YYIA 4M9AA 2DDHA 4L38A 1FS9A 3UBRA 2IX6A 1IVHA 3GQTA 3FO3A 3SWOA 2R0NA 2VIGA 2RDZA 3UU9A 3MXLA 3LG1A 3RKHA 2YYJA 2YYMA 4Q5CA 1JQIA 3NF4A 3TORA 2IX5A 2C12A 3HWCA 3D9FA 4DOYA 4IV6A 3MDDA 5K3HA 4Q17A 4KTOA 3MPJA 3R7KA 2YYKA 1UDYA 1WS9A 3GNCA 1UKWA 3B96A 3P4TA 5K3IA 1BUCA 2WBIA 4XVXA 3SF6A 3GM6A 1U8VA 2Z1QA 4RM7A 3SXQA 3MPIA 4Q5BA 2D29A 4IRNA 1R2JA 3M9VA 2RF7A 4Q4UA 2R0MA 3AFFA 4P13A 3AFEA 1EGDA 1SIQA 3X0YA 2RFQA 2JIFA 2UXWA 4ZXVA 3F29A 4G5EA 1SIRA 2VR0A 3II9A 3OWMA 4WJYA 3L1TA 2REHA 3OIBA 2J7AA 3D9EA 3BNHA 1EGEA 2ZO5A 2JBTA 4W9UA 2JBRA
chains in the Genus database with same CATH superfamily
4HR3A 1X8ZA 3TZ2A 2BU8A 4L3YA 4X28A 3TTBA 3D9GA 4JEKA 1RJ4A 3SCEA 4E01A 2OEXA 1XFWA 3DJLA 5EZ3A 2BTZA 2CJ6A 5M4NA 4QICA 2Q8FA 2EBAA 4Q1OA 2YYLA 2A1TA 3BNFA 2XS1A 4L3XA 2GBBA 2HJNA 4FF1A 2R02A 2PG0A 1FS7A 2E81A 4DZYA 3C3LA 3D2RA 4OO2A 4AKGA 4N5FA 1K90A 2QR4A 3D6BA 5K3JA 1W07A 1Y8OA 2ZAFA 4U83A 1S26A 2OEVA 3D1IA 2JBSA 4AKHA 2EBFX 2DVLA 1EGCA 3EONA 4L3ZA 2FONA 1XFYA 2YYGA 4Q0TA 1IS2A 4KCFA 1XFUA 1X91A 2BU7A 3EOMA 2ZKJA 4J1VA 2OT4A 3PFDA 4F0XA 3MKHA 2R05A 4JIOA 2YGWA 2Q8IA 1RX0A 1GU6A 3MMOA 2C0UA 4X28C 2LFWA 2R03A 1GJVA 1FS8A 3Q0AA 4O5MA 4ZYJA 3X29A 4LQSB 4NXLA 4LQQB 4G5EA 2BU6A 3D9DA 2CJ4A 3FCJA 5B5VA 2Q8GA 5M4MA 1OAHA 4V25A 4L1FA 3BNGA 2CJ7A 3X0XA 3LGQA 3MDEA 2PNRA 2ZDYA 4KSFA 1T9GA 3Q24A 3BNJA 5K3GA 2EBHX 2XQRB 4MPEA 2PO4A 3OWAA 3VADA 5GJWE 3S7WA 2CX9A 3CRKA 2OR0A 1QDBA 2E80A 3TZ0A 2YYIA 4HKSA 1SK6A 1XFXA 4M9AA 4V26A 3Q23A 2CJ8A 4H85A 4MPNA 2DDHA 2OJQA 4FF3A 4L38A 1FS9A 4FZ4A 3C2PA 3UBRA 2IX6A 3TZ5A 1IVHA 4H7QA 5J71A 5J6AA 4MPCA 4HKRA 3GQTA 2ZDXA 2FP1A 3SWOA 3FO3A 5M4KA 5BRKA 3KMLA 4P79A 2R0NA 1PI1A 2VIGA 2RDZA 4E00A 3UU9A 3MXLA 3LG1A 3RKHA 2YYJA 1GKXA 2YYMA 2BU2A 4Q5CA 4E02A 1JQIA 4AI6A 3NF4A 1Y8PA 3TORA 2IX5A 3N0RA 4KSAA 2C12A 3CRLA 3Q22A 3HWCA 3D9FA 5B6BA 4DOYA 4IV6A 3MDDA 2F6LA 5K3HA 1PK0A 4Q17A 4KTOA 1SC5A 1Y8NA 2AZEA 1Y0VA 4MP2A 1GKZA 3MPJA 3R7KA 5M4PA 3CE2A 2YYKA 5B5WA 1UDYA 1WS9A 3GNCA 1UKWA 4KS9A 3C46A 3B96A 3P4TA 5K3IA 2EC5A 1BUCA 2WBIA 4XVXA 3SF6A 3GM6A 1U8VA 5BRMA 2Z1QA 4RM7A 1XFZA 3SXQA 3MPIA 1RJ1A 1RP3A 2Q8HA 4Q5BA 2CJ5A 4FF2A 2XS8A 2D29A 4IRNA 4JIZA 3VKGA 1R2JA 1X90A 2AO2A 3M9VA 2RF7A 4Q4UA 2R0MA 3AFFA 4P13A 3AFEA 1EGDA 1SIQA 3X0YA 2RFQA 2JIFA 2UXWA 4ZXVA 1K93A 2FP2A 1XG2B 2BU5A 1SIRA 1LVCA 2VR0A 3F29A 2VF1A 3II9A 4G97A 4H81A 3OWMA 4WJYA 3L1TA 2REHA 3OIBA 5GJVE 2J7AA 3D9EA 1JM6A 3BNHA 4FF4A 1EGEA 2ZO5A 2JBTA 4MP7A 1R3BA 4AKIA 3VKHA 1XFVA 3U33A 4W9UA 3TZ4A 2E0AA 1K8TA 2JBRA
chains in the Genus database with same CATH topology
4HR3A 4L3YA 4X28A 3TTBA 3D9GA 4JEKA 3SCEA 2EBAA 4Q1OA 2YYLA 2A1TA 3BNFA 4L3XA 2PG0A 1FS7A 2E81A 4OO2A 4N5FA 3D6BA 5K3JA 1W07A 2ZAFA 4U83A 3D1IA 2JBSA 2DVLA 1EGCA 3EONA 4L3ZA 2FONA 2YYGA 4Q0TA 1IS2A 4KCFA 3EOMA 2OT4A 3PFDA 3MKHA 1RX0A 1GU6A 3MMOA 2C0UA 4X28C 1FS8A 4O5MA 4ZYJA 4NXLA 3D9DA 3FCJA 1OAHA 4L1FA 3BNGA 3X0XA 3LGQA 3MDEA 1T9GA 3BNJA 5K3GA 3OWAA 3S7WA 2CX9A 2OR0A 1QDBA 2E80A 2YYIA 4M9AA 2DDHA 4L38A 1FS9A 3UBRA 2IX6A 1IVHA 3GQTA 3FO3A 3SWOA 2R0NA 2VIGA 2RDZA 3UU9A 3MXLA 3LG1A 3RKHA 2YYJA 2YYMA 4Q5CA 1JQIA 3NF4A 3TORA 2IX5A 2C12A 3HWCA 3D9FA 4DOYA 4IV6A 3MDDA 5K3HA 4Q17A 4KTOA 3MPJA 3R7KA 2YYKA 1UDYA 1WS9A 3GNCA 1UKWA 3B96A 3P4TA 5K3IA 1BUCA 2WBIA 4XVXA 3SF6A 3GM6A 1U8VA 2Z1QA 4RM7A 3SXQA 3MPIA 4Q5BA 2D29A 4IRNA 1R2JA 3M9VA 2RF7A 4Q4UA 2R0MA 3AFFA 4P13A 3AFEA 1EGDA 1SIQA 3X0YA 2RFQA 2JIFA 2UXWA 4ZXVA 3F29A 4G5EA 1SIRA 2VR0A 3II9A 3OWMA 4WJYA 3L1TA 2REHA 3OIBA 2J7AA 3D9EA 3BNHA 1EGEA 2ZO5A 2JBTA 4W9UA 2JBRA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4HR3 A;  4L3Y A;  4X28 A;  3TTB A;  3D9G A;  4JEK A;  3SCE A;  2EBA A;  4Q1O A;  2YYL A;  2A1T A;  3BNF A;  4L3X A;  2PG0 A;  1FS7 A;  2E81 A;  4OO2 A;  4N5F A;  3D6B A;  5K3J A;  1W07 A;  2ZAF A;  4U83 A;  3D1I A;  2JBS A;  2DVL A;  1EGC A;  3EON A;  4L3Z A;  2FON A;  2YYG A;  4Q0T A;  1IS2 A;  4KCF A;  3EOM A;  2OT4 A;  3PFD A;  3MKH A;  1RX0 A;  1GU6 A;  3MMO A;  2C0U A;  4X28 C;  1FS8 A;  4O5M A;  4ZYJ A;  4NXL A;  3D9D A;  3FCJ A;  1OAH A;  4L1F A;  3BNG A;  3X0X A;  3LGQ A;  3MDE A;  1T9G A;  3BNJ A;  5K3G A;  3OWA A;  3S7W A;  2CX9 A;  2OR0 A;  1QDB A;  2E80 A;  2YYI A;  4M9A A;  2DDH A;  4L38 A;  1FS9 A;  3UBR A;  2IX6 A;  1IVH A;  3GQT A;  3FO3 A;  3SWO A;  2R0N A;  2VIG A;  2RDZ A;  3UU9 A;  3MXL A;  3LG1 A;  3RKH A;  2YYJ A;  2YYM A;  4Q5C A;  1JQI A;  3NF4 A;  3TOR A;  2IX5 A;  2C12 A;  3HWC A;  3D9F A;  4DOY A;  4IV6 A;  3MDD A;  5K3H A;  4Q17 A;  4KTO A;  3MPJ A;  3R7K A;  2YYK A;  1UDY A;  1WS9 A;  3GNC A;  1UKW A;  3B96 A;  3P4T A;  5K3I A;  1BUC A;  2WBI A;  4XVX A;  3SF6 A;  3GM6 A;  1U8V A;  2Z1Q A;  4RM7 A;  3SXQ A;  3MPI A;  4Q5B A;  2D29 A;  4IRN A;  1R2J A;  3M9V A;  2RF7 A;  4Q4U A;  2R0M A;  3AFF A;  4P13 A;  3AFE A;  1EGD A;  1SIQ A;  3X0Y A;  2RFQ A;  2JIF A;  2UXW A;  4ZXV A;  3F29 A;  4G5E A;  1SIR A;  2VR0 A;  3II9 A;  3OWM A;  4WJY A;  3L1T A;  2REH A;  3OIB A;  2J7A A;  3D9E A;  3BNH A;  1EGE A;  2ZO5 A;  2JBT A;  4W9U A;  2JBR A; 
#chains in the Genus database with same CATH topology
 4HR3 A;  1X8Z A;  3TZ2 A;  2BU8 A;  4L3Y A;  4X28 A;  3TTB A;  3D9G A;  4JEK A;  1RJ4 A;  3SCE A;  4E01 A;  2OEX A;  1XFW A;  3DJL A;  5EZ3 A;  2BTZ A;  2CJ6 A;  5M4N A;  4QIC A;  2Q8F A;  2EBA A;  4Q1O A;  2YYL A;  2A1T A;  3BNF A;  2XS1 A;  4L3X A;  2GBB A;  2HJN A;  4FF1 A;  2R02 A;  2PG0 A;  1FS7 A;  2E81 A;  4DZY A;  3C3L A;  3D2R A;  4OO2 A;  4AKG A;  4N5F A;  1K90 A;  2QR4 A;  3D6B A;  5K3J A;  1W07 A;  1Y8O A;  2ZAF A;  4U83 A;  1S26 A;  2OEV A;  3D1I A;  2JBS A;  4AKH A;  2EBF X;  2DVL A;  1EGC A;  3EON A;  4L3Z A;  2FON A;  1XFY A;  2YYG A;  4Q0T A;  1IS2 A;  4KCF A;  1XFU A;  1X91 A;  2BU7 A;  3EOM A;  2ZKJ A;  4J1V A;  2OT4 A;  3PFD A;  4F0X A;  3MKH A;  2R05 A;  4JIO A;  2YGW A;  2Q8I A;  1RX0 A;  1GU6 A;  3MMO A;  2C0U A;  4X28 C;  2LFW A;  2R03 A;  1GJV A;  1FS8 A;  3Q0A A;  4O5M A;  4ZYJ A;  3X29 A;  4LQS B;  4NXL A;  4LQQ B;  4G5E A;  2BU6 A;  3D9D A;  2CJ4 A;  3FCJ A;  5B5V A;  2Q8G A;  5M4M A;  1OAH A;  4V25 A;  4L1F A;  3BNG A;  2CJ7 A;  3X0X A;  3LGQ A;  3MDE A;  2PNR A;  2ZDY A;  4KSF A;  1T9G A;  3Q24 A;  3BNJ A;  5K3G A;  2EBH X;  2XQR B;  4MPE A;  2PO4 A;  3OWA A;  3VAD A;  5GJW E;  3S7W A;  2CX9 A;  3CRK A;  2OR0 A;  1QDB A;  2E80 A;  3TZ0 A;  2YYI A;  4HKS A;  1SK6 A;  1XFX A;  4M9A A;  4V26 A;  3Q23 A;  2CJ8 A;  4H85 A;  4MPN A;  2DDH A;  2OJQ A;  4FF3 A;  4L38 A;  1FS9 A;  4FZ4 A;  3C2P A;  3UBR A;  2IX6 A;  3TZ5 A;  1IVH A;  4H7Q A;  5J71 A;  5J6A A;  4MPC A;  4HKR A;  3GQT A;  2ZDX A;  2FP1 A;  3SWO A;  3FO3 A;  5M4K A;  5BRK A;  3KML A;  4P79 A;  2R0N A;  1PI1 A;  2VIG A;  2RDZ A;  4E00 A;  3UU9 A;  3MXL A;  3LG1 A;  3RKH A;  2YYJ A;  1GKX A;  2YYM A;  2BU2 A;  4Q5C A;  4E02 A;  1JQI A;  4AI6 A;  3NF4 A;  1Y8P A;  3TOR A;  2IX5 A;  3N0R A;  4KSA A;  2C12 A;  3CRL A;  3Q22 A;  3HWC A;  3D9F A;  5B6B A;  4DOY A;  4IV6 A;  3MDD A;  2F6L A;  5K3H A;  1PK0 A;  4Q17 A;  4KTO A;  1SC5 A;  1Y8N A;  2AZE A;  1Y0V A;  4MP2 A;  1GKZ A;  3MPJ A;  3R7K A;  5M4P A;  3CE2 A;  2YYK A;  5B5W A;  1UDY A;  1WS9 A;  3GNC A;  1UKW A;  4KS9 A;  3C46 A;  3B96 A;  3P4T A;  5K3I A;  2EC5 A;  1BUC A;  2WBI A;  4XVX A;  3SF6 A;  3GM6 A;  1U8V A;  5BRM A;  2Z1Q A;  4RM7 A;  1XFZ A;  3SXQ A;  3MPI A;  1RJ1 A;  1RP3 A;  2Q8H A;  4Q5B A;  2CJ5 A;  4FF2 A;  2XS8 A;  2D29 A;  4IRN A;  4JIZ A;  3VKG A;  1R2J A;  1X90 A;  2AO2 A;  3M9V A;  2RF7 A;  4Q4U A;  2R0M A;  3AFF A;  4P13 A;  3AFE A;  1EGD A;  1SIQ A;  3X0Y A;  2RFQ A;  2JIF A;  2UXW A;  4ZXV A;  1K93 A;  2FP2 A;  1XG2 B;  2BU5 A;  1SIR A;  1LVC A;  2VR0 A;  3F29 A;  2VF1 A;  3II9 A;  4G97 A;  4H81 A;  3OWM A;  4WJY A;  3L1T A;  2REH A;  3OIB A;  5GJV E;  2J7A A;  3D9E A;  1JM6 A;  3BNH A;  4FF4 A;  1EGE A;  2ZO5 A;  2JBT A;  4MP7 A;  1R3B A;  4AKI A;  3VKH A;  1XFV A;  3U33 A;  4W9U A;  3TZ4 A;  2E0A A;  1K8T A;  2JBR A; 
#chains in the Genus database with same CATH homology
 4HR3 A;  4L3Y A;  4X28 A;  3TTB A;  3D9G A;  4JEK A;  3SCE A;  2EBA A;  4Q1O A;  2YYL A;  2A1T A;  3BNF A;  4L3X A;  2PG0 A;  1FS7 A;  2E81 A;  4OO2 A;  4N5F A;  3D6B A;  5K3J A;  1W07 A;  2ZAF A;  4U83 A;  3D1I A;  2JBS A;  2DVL A;  1EGC A;  3EON A;  4L3Z A;  2FON A;  2YYG A;  4Q0T A;  1IS2 A;  4KCF A;  3EOM A;  2OT4 A;  3PFD A;  3MKH A;  1RX0 A;  1GU6 A;  3MMO A;  2C0U A;  4X28 C;  1FS8 A;  4O5M A;  4ZYJ A;  4NXL A;  3D9D A;  3FCJ A;  1OAH A;  4L1F A;  3BNG A;  3X0X A;  3LGQ A;  3MDE A;  1T9G A;  3BNJ A;  5K3G A;  3OWA A;  3S7W A;  2CX9 A;  2OR0 A;  1QDB A;  2E80 A;  2YYI A;  4M9A A;  2DDH A;  4L38 A;  1FS9 A;  3UBR A;  2IX6 A;  1IVH A;  3GQT A;  3FO3 A;  3SWO A;  2R0N A;  2VIG A;  2RDZ A;  3UU9 A;  3MXL A;  3LG1 A;  3RKH A;  2YYJ A;  2YYM A;  4Q5C A;  1JQI A;  3NF4 A;  3TOR A;  2IX5 A;  2C12 A;  3HWC A;  3D9F A;  4DOY A;  4IV6 A;  3MDD A;  5K3H A;  4Q17 A;  4KTO A;  3MPJ A;  3R7K A;  2YYK A;  1UDY A;  1WS9 A;  3GNC A;  1UKW A;  3B96 A;  3P4T A;  5K3I A;  1BUC A;  2WBI A;  4XVX A;  3SF6 A;  3GM6 A;  1U8V A;  2Z1Q A;  4RM7 A;  3SXQ A;  3MPI A;  4Q5B A;  2D29 A;  4IRN A;  1R2J A;  3M9V A;  2RF7 A;  4Q4U A;  2R0M A;  3AFF A;  4P13 A;  3AFE A;  1EGD A;  1SIQ A;  3X0Y A;  2RFQ A;  2JIF A;  2UXW A;  4ZXV A;  3F29 A;  4G5E A;  1SIR A;  2VR0 A;  3II9 A;  3OWM A;  4WJY A;  3L1T A;  2REH A;  3OIB A;  2J7A A;  3D9E A;  3BNH A;  1EGE A;  2ZO5 A;  2JBT A;  4W9U A;  2JBR A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...