3R7KA

Crystal structure of a probable acyl coa dehydrogenase from mycobacterium abscessus atcc 19977 / dsm 44196
Total Genus 141
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
141
sequence length
378
structure length
378
Chain Sequence
PEAWTTPERRALSQMARSFVEREIAPKLAEWEHVGEIPRDLHLNAAEVGLLGIGFPEEVGGSGGNAIDSALVTEAILAAGGSTGVCAALFTHGIALPHIAANGSDALIERYVRPTLAGKMIGSLGVTEPGAGSDVANLRTRAVREGDTYVVNGAKTFITSGVRADFVTTAVRTGGPGYGGVSLLVIDKNSPGFEVSRRLDKMGWRCSDTAELSFVDVRVPADNLVGAENSGFLQIMQQFQAERLGIAVQAYATAGRALDLAKSWARERETFGRPLTGRQIIRHKLAEMARQVDVACTYTRAVMQRWLAGEDVVAEVSMAKNTAVYACDYVVNEAVQIFGGMGYMRESEIERHYRDCRILGIGGGTNEIMNEVIAKRIG
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
source organism Mycobacterium abscessus
publication title Increasing the structural coverage of tuberculosis drug targets.
pubmed doi rcsb
molecule keywords Probable acyl CoA dehydrogenase
total genus 141
structure length 378
sequence length 378
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2011-03-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00441 Acyl-CoA_dh_1 Acyl-CoA dehydrogenase, C-terminal domain
A PF02770 Acyl-CoA_dh_M Acyl-CoA dehydrogenase, middle domain
A PF02771 Acyl-CoA_dh_N Acyl-CoA dehydrogenase, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.540.10 Mainly Alpha Orthogonal Bundle Butyryl-Coa Dehydrogenase, subunit A; domain 1 Acyl-CoA dehydrogenase/oxidase, N-terminal domain 3r7kA01
1.20.140.10 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A; domain 3 Butyryl-CoA Dehydrogenase, subunit A, domain 3 3r7kA03
2.40.110.10 Mainly Beta Beta Barrel Butyryl-CoA Dehydrogenase, subunit A; domain 2 Butyryl-CoA Dehydrogenase, subunit A, domain 2 3r7kA02
3MPJA 4L3ZA 1FS7A 3MDEA 4XVXA 4NXLA 2D29A 3NF4A 3LGQA 4L38A 3SCEA 1WS9A 1IS2A 3SXQA 3SF6A 1GU6A 1W07A 3MPIA 4JEKA 3AFEA 2YYIA 2C0UA 3TORA 1JQIA 2A1TA 2RFQA 3MKHA 4IV6A 4X28C 3MXLA 3MDDA 4L1FA 5K3IA 4U83A 2E80A 2EBAA 3D9GA 3GNCA 1EGDA 1SIRA 2FONA 1UDYA 4KCFA 5K3JA 1SIQA 3BNJA 4Q5CA 3D6BA 4M9AA 3OWAA 2Z1QA 4OO2A 3UBRA 2J7AA 1R2JA 1IVHA 3GQTA 2YYGA 2OT4A 1T9GA 2JBSA 2C12A 4W9UA 4Q0TA 3BNFA 4ZXVA 4X28A 2JBRA 2ZO5A 2PG0A 4HR3A 2DVLA 4Q5BA 2YYJA 3EONA 3UU9A 4Q17A 4N5FA 1OAHA 4L3XA 2R0NA 3D9EA 2CX9A 2E81A 3L1TA 3II9A 1BUCA 3MMOA 2R0MA 1EGEA 3LG1A 2JIFA 2UXWA 2IX6A 2VIGA 3D1IA 4IRNA 2OR0A 4P13A 2YYKA 4RM7A 1EGCA 1FS8A 3HWCA 4Q4UA 3P4TA 3GM6A 3SWOA 2ZAFA 5K3HA 2RDZA 3S7WA 2DDHA 2WBIA 3FCJA 1UKWA 2REHA 2IX5A 3D9FA 4O5MA 3R7KA 4L3YA 2RF7A 3BNHA 3RKHA 2VR0A 1RX0A 2YYMA 2YYLA 3X0YA 1FS9A 3D9DA 1U8VA 4G5EA 4WJYA 3BNGA 4DOYA 3FO3A 4KTOA 3PFDA 3X0XA 3F29A 3OIBA 2JBTA 3EOMA 3AFFA 3TTBA 5K3GA 3OWMA 4ZYJA 3B96A 1QDBA 3M9VA 4Q1OA
chains in the Genus database with same CATH superfamily
3MPJA 4L3ZA 1FS7A 3MDEA 4XVXA 4NXLA 2D29A 1X91A 2EBHX 2OEXA 3NF4A 4H7QA 3LGQA 1RP3A 2BU2A 2CJ8A 2ZDYA 4L38A 4MP2A 3C3LA 3SCEA 1SC5A 2EBFX 4LQQB 4KSFA 4QICA 1WS9A 1IS2A 1XFXA 2CJ4A 3SXQA 3SF6A 1GU6A 1JM6A 2FP2A 4AKHA 2FP1A 4AKGA 1PI1A 2BU5A 1W07A 3MPIA 2R02A 4JEKA 3AFEA 2YYIA 2C0UA 2BTZA 5B5VA 3TORA 1JQIA 5M4NA 2A1TA 2RFQA 3MKHA 4IV6A 4X28C 3D2RA 1LVCA 2XQRB 3MXLA 3MDDA 5B6BA 4L1FA 5K3IA 4U83A 2E80A 2XS1A 3Q0AA 2EBAA 2QR4A 3D9GA 3GNCA 3TZ0A 3CRLA 4KSAA 3Q22A 3VKGA 1EGDA 1SIRA 4FF1A 3DJLA 2FONA 3VADA 1UDYA 1GJVA 4KCFA 5K3JA 1SIQA 3BNJA 4Q5CA 4DZYA 3D6BA 4F0XA 4M9AA 2Q8IA 3OWAA 2E0AA 2Z1QA 2ZKJA 2F6LA 2OEVA 2OJQA 4G97A 4OO2A 5BRMA 1S26A 4MPCA 3UBRA 2J7AA 1K93A 1R2JA 1Y0VA 2HJNA 1IVHA 3GQTA 1RJ4A 4H81A 2YYGA 1R3BA 1XFWA 2AO2A 1T9GA 2JBSA 2OT4A 5BRKA 4FF4A 2C12A 4W9UA 4Q0TA 3BNFA 4ZXVA 4X28A 2JBRA 2ZO5A 2PG0A 4HR3A 2DVLA 1X8ZA 1RJ1A 2CJ6A 2YYJA 4Q5BA 3Q24A 3EONA 5GJVE 1Y8NA 3Q23A 3UU9A 4Q17A 3U33A 4N5FA 1OAHA 4L3XA 2R0NA 3D9EA 2CX9A 4E01A 2E81A 3L1TA 3KMLA 3II9A 1BUCA 3MMOA 2R0MA 1SK6A 1EGEA 3LG1A 2Q8FA 2JIFA 2UXWA 2VF1A 2IX6A 2LFWA 2VIGA 2AZEA 3D1IA 4P79A 5J6AA 5J71A 5M4KA 4IRNA 2OR0A 4P13A 5M4PA 2YYKA 4FF3A 4RM7A 4FF2A 1EGCA 1XFZA 5EZ3A 4H85A 1FS8A 2CJ7A 3HWCA 1Y8PA 3P4TA 3N0RA 4Q4UA 2Q8GA 3GM6A 4JIZA 2Q8HA 3SWOA 1XFYA 2CJ5A 1XFVA 2ZAFA 2BU6A 3TZ4A 5K3HA 4LQSB 3C46A 2RDZA 3S7WA 2DDHA 4J1VA 3TZ5A 4AI6A 2WBIA 3FCJA 1UKWA 2REHA 2R05A 4E00A 1Y8OA 2IX5A 2PNRA 3D9FA 4O5MA 3R7KA 4L3YA 4MP7A 2RF7A 3BNHA 3RKHA 2VR0A 4AKIA 1RX0A 2YYMA 4MPEA 2YYLA 5B5WA 3X0YA 5M4MA 2R03A 4HKRA 4V25A 3VKHA 1FS9A 4E02A 1GKZA 3D9DA 1PK0A 1U8VA 3TZ2A 2ZDXA 4MPNA 4G5EA 2GBBA 1GKXA 1XFUA 4WJYA 3BNGA 4DOYA 3FO3A 5GJWE 4KTOA 3PFDA 3X0XA 2XS8A 1XG2B 3CRKA 3OIBA 3F29A 4FZ4A 4JIOA 2JBTA 4HKSA 1X90A 3C2PA 3EOMA 1K8TA 2BU8A 2PO4A 2YGWA 3AFFA 3TTBA 5K3GA 3CE2A 4KS9A 3OWMA 4ZYJA 3B96A 1K90A 1QDBA 2EC5A 2BU7A 3M9VA 4V26A 3X29A 4Q1OA
chains in the Genus database with same CATH topology
3MPJA 4L3ZA 1FS7A 3MDEA 4XVXA 4NXLA 2D29A 3NF4A 3LGQA 4L38A 3SCEA 1WS9A 1IS2A 3SXQA 3SF6A 1GU6A 1W07A 3MPIA 4JEKA 3AFEA 2YYIA 2C0UA 3TORA 1JQIA 2A1TA 2RFQA 3MKHA 4IV6A 4X28C 3MXLA 3MDDA 4L1FA 5K3IA 4U83A 2E80A 2EBAA 3D9GA 3GNCA 1EGDA 1SIRA 2FONA 1UDYA 4KCFA 5K3JA 1SIQA 3BNJA 4Q5CA 3D6BA 4M9AA 3OWAA 2Z1QA 4OO2A 3UBRA 2J7AA 1R2JA 1IVHA 3GQTA 2YYGA 2OT4A 1T9GA 2JBSA 2C12A 4W9UA 4Q0TA 3BNFA 4ZXVA 4X28A 2JBRA 2ZO5A 2PG0A 4HR3A 2DVLA 4Q5BA 2YYJA 3EONA 3UU9A 4Q17A 4N5FA 1OAHA 4L3XA 2R0NA 3D9EA 2CX9A 2E81A 3L1TA 3II9A 1BUCA 3MMOA 2R0MA 1EGEA 3LG1A 2JIFA 2UXWA 2IX6A 2VIGA 3D1IA 4IRNA 2OR0A 4P13A 2YYKA 4RM7A 1EGCA 1FS8A 3HWCA 4Q4UA 3P4TA 3GM6A 3SWOA 2ZAFA 5K3HA 2RDZA 3S7WA 2DDHA 2WBIA 3FCJA 1UKWA 2REHA 2IX5A 3D9FA 4O5MA 3R7KA 4L3YA 2RF7A 3BNHA 3RKHA 2VR0A 1RX0A 2YYMA 2YYLA 3X0YA 1FS9A 3D9DA 1U8VA 4G5EA 4WJYA 3BNGA 4DOYA 3FO3A 4KTOA 3PFDA 3X0XA 3F29A 3OIBA 2JBTA 3EOMA 3AFFA 3TTBA 5K3GA 3OWMA 4ZYJA 3B96A 1QDBA 3M9VA 4Q1OA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3MPJ A;  4L3Z A;  1FS7 A;  3MDE A;  4XVX A;  4NXL A;  2D29 A;  3NF4 A;  3LGQ A;  4L38 A;  3SCE A;  1WS9 A;  1IS2 A;  3SXQ A;  3SF6 A;  1GU6 A;  1W07 A;  3MPI A;  4JEK A;  3AFE A;  2YYI A;  2C0U A;  3TOR A;  1JQI A;  2A1T A;  2RFQ A;  3MKH A;  4IV6 A;  4X28 C;  3MXL A;  3MDD A;  4L1F A;  5K3I A;  4U83 A;  2E80 A;  2EBA A;  3D9G A;  3GNC A;  1EGD A;  1SIR A;  2FON A;  1UDY A;  4KCF A;  5K3J A;  1SIQ A;  3BNJ A;  4Q5C A;  3D6B A;  4M9A A;  3OWA A;  2Z1Q A;  4OO2 A;  3UBR A;  2J7A A;  1R2J A;  1IVH A;  3GQT A;  2YYG A;  2OT4 A;  1T9G A;  2JBS A;  2C12 A;  4W9U A;  4Q0T A;  3BNF A;  4ZXV A;  4X28 A;  2JBR A;  2ZO5 A;  2PG0 A;  4HR3 A;  2DVL A;  4Q5B A;  2YYJ A;  3EON A;  3UU9 A;  4Q17 A;  4N5F A;  1OAH A;  4L3X A;  2R0N A;  3D9E A;  2CX9 A;  2E81 A;  3L1T A;  3II9 A;  1BUC A;  3MMO A;  2R0M A;  1EGE A;  3LG1 A;  2JIF A;  2UXW A;  2IX6 A;  2VIG A;  3D1I A;  4IRN A;  2OR0 A;  4P13 A;  2YYK A;  4RM7 A;  1EGC A;  1FS8 A;  3HWC A;  4Q4U A;  3P4T A;  3GM6 A;  3SWO A;  2ZAF A;  5K3H A;  2RDZ A;  3S7W A;  2DDH A;  2WBI A;  3FCJ A;  1UKW A;  2REH A;  2IX5 A;  3D9F A;  4O5M A;  3R7K A;  4L3Y A;  2RF7 A;  3BNH A;  3RKH A;  2VR0 A;  1RX0 A;  2YYM A;  2YYL A;  3X0Y A;  1FS9 A;  3D9D A;  1U8V A;  4G5E A;  4WJY A;  3BNG A;  4DOY A;  3FO3 A;  4KTO A;  3PFD A;  3X0X A;  3F29 A;  3OIB A;  2JBT A;  3EOM A;  3AFF A;  3TTB A;  5K3G A;  3OWM A;  4ZYJ A;  3B96 A;  1QDB A;  3M9V A;  4Q1O A; 
#chains in the Genus database with same CATH topology
 3MPJ A;  4L3Z A;  1FS7 A;  3MDE A;  4XVX A;  4NXL A;  2D29 A;  1X91 A;  2EBH X;  2OEX A;  3NF4 A;  4H7Q A;  3LGQ A;  1RP3 A;  2BU2 A;  2CJ8 A;  2ZDY A;  4L38 A;  4MP2 A;  3C3L A;  3SCE A;  1SC5 A;  2EBF X;  4LQQ B;  4KSF A;  4QIC A;  1WS9 A;  1IS2 A;  1XFX A;  2CJ4 A;  3SXQ A;  3SF6 A;  1GU6 A;  1JM6 A;  2FP2 A;  4AKH A;  2FP1 A;  4AKG A;  1PI1 A;  2BU5 A;  1W07 A;  3MPI A;  2R02 A;  4JEK A;  3AFE A;  2YYI A;  2C0U A;  2BTZ A;  5B5V A;  3TOR A;  1JQI A;  5M4N A;  2A1T A;  2RFQ A;  3MKH A;  4IV6 A;  4X28 C;  3D2R A;  1LVC A;  2XQR B;  3MXL A;  3MDD A;  5B6B A;  4L1F A;  5K3I A;  4U83 A;  2E80 A;  2XS1 A;  3Q0A A;  2EBA A;  2QR4 A;  3D9G A;  3GNC A;  3TZ0 A;  3CRL A;  4KSA A;  3Q22 A;  3VKG A;  1EGD A;  1SIR A;  4FF1 A;  3DJL A;  2FON A;  3VAD A;  1UDY A;  1GJV A;  4KCF A;  5K3J A;  1SIQ A;  3BNJ A;  4Q5C A;  4DZY A;  3D6B A;  4F0X A;  4M9A A;  2Q8I A;  3OWA A;  2E0A A;  2Z1Q A;  2ZKJ A;  2F6L A;  2OEV A;  2OJQ A;  4G97 A;  4OO2 A;  5BRM A;  1S26 A;  4MPC A;  3UBR A;  2J7A A;  1K93 A;  1R2J A;  1Y0V A;  2HJN A;  1IVH A;  3GQT A;  1RJ4 A;  4H81 A;  2YYG A;  1R3B A;  1XFW A;  2AO2 A;  1T9G A;  2JBS A;  2OT4 A;  5BRK A;  4FF4 A;  2C12 A;  4W9U A;  4Q0T A;  3BNF A;  4ZXV A;  4X28 A;  2JBR A;  2ZO5 A;  2PG0 A;  4HR3 A;  2DVL A;  1X8Z A;  1RJ1 A;  2CJ6 A;  2YYJ A;  4Q5B A;  3Q24 A;  3EON A;  5GJV E;  1Y8N A;  3Q23 A;  3UU9 A;  4Q17 A;  3U33 A;  4N5F A;  1OAH A;  4L3X A;  2R0N A;  3D9E A;  2CX9 A;  4E01 A;  2E81 A;  3L1T A;  3KML A;  3II9 A;  1BUC A;  3MMO A;  2R0M A;  1SK6 A;  1EGE A;  3LG1 A;  2Q8F A;  2JIF A;  2UXW A;  2VF1 A;  2IX6 A;  2LFW A;  2VIG A;  2AZE A;  3D1I A;  4P79 A;  5J6A A;  5J71 A;  5M4K A;  4IRN A;  2OR0 A;  4P13 A;  5M4P A;  2YYK A;  4FF3 A;  4RM7 A;  4FF2 A;  1EGC A;  1XFZ A;  5EZ3 A;  4H85 A;  1FS8 A;  2CJ7 A;  3HWC A;  1Y8P A;  3P4T A;  3N0R A;  4Q4U A;  2Q8G A;  3GM6 A;  4JIZ A;  2Q8H A;  3SWO A;  1XFY A;  2CJ5 A;  1XFV A;  2ZAF A;  2BU6 A;  3TZ4 A;  5K3H A;  4LQS B;  3C46 A;  2RDZ A;  3S7W A;  2DDH A;  4J1V A;  3TZ5 A;  4AI6 A;  2WBI A;  3FCJ A;  1UKW A;  2REH A;  2R05 A;  4E00 A;  1Y8O A;  2IX5 A;  2PNR A;  3D9F A;  4O5M A;  3R7K A;  4L3Y A;  4MP7 A;  2RF7 A;  3BNH A;  3RKH A;  2VR0 A;  4AKI A;  1RX0 A;  2YYM A;  4MPE A;  2YYL A;  5B5W A;  3X0Y A;  5M4M A;  2R03 A;  4HKR A;  4V25 A;  3VKH A;  1FS9 A;  4E02 A;  1GKZ A;  3D9D A;  1PK0 A;  1U8V A;  3TZ2 A;  2ZDX A;  4MPN A;  4G5E A;  2GBB A;  1GKX A;  1XFU A;  4WJY A;  3BNG A;  4DOY A;  3FO3 A;  5GJW E;  4KTO A;  3PFD A;  3X0X A;  2XS8 A;  1XG2 B;  3CRK A;  3OIB A;  3F29 A;  4FZ4 A;  4JIO A;  2JBT A;  4HKS A;  1X90 A;  3C2P A;  3EOM A;  1K8T A;  2BU8 A;  2PO4 A;  2YGW A;  3AFF A;  3TTB A;  5K3G A;  3CE2 A;  4KS9 A;  3OWM A;  4ZYJ A;  3B96 A;  1K90 A;  1QDB A;  2EC5 A;  2BU7 A;  3M9V A;  4V26 A;  3X29 A;  4Q1O A; 
#chains in the Genus database with same CATH homology
 3MPJ A;  4L3Z A;  1FS7 A;  3MDE A;  4XVX A;  4NXL A;  2D29 A;  3NF4 A;  3LGQ A;  4L38 A;  3SCE A;  1WS9 A;  1IS2 A;  3SXQ A;  3SF6 A;  1GU6 A;  1W07 A;  3MPI A;  4JEK A;  3AFE A;  2YYI A;  2C0U A;  3TOR A;  1JQI A;  2A1T A;  2RFQ A;  3MKH A;  4IV6 A;  4X28 C;  3MXL A;  3MDD A;  4L1F A;  5K3I A;  4U83 A;  2E80 A;  2EBA A;  3D9G A;  3GNC A;  1EGD A;  1SIR A;  2FON A;  1UDY A;  4KCF A;  5K3J A;  1SIQ A;  3BNJ A;  4Q5C A;  3D6B A;  4M9A A;  3OWA A;  2Z1Q A;  4OO2 A;  3UBR A;  2J7A A;  1R2J A;  1IVH A;  3GQT A;  2YYG A;  2OT4 A;  1T9G A;  2JBS A;  2C12 A;  4W9U A;  4Q0T A;  3BNF A;  4ZXV A;  4X28 A;  2JBR A;  2ZO5 A;  2PG0 A;  4HR3 A;  2DVL A;  4Q5B A;  2YYJ A;  3EON A;  3UU9 A;  4Q17 A;  4N5F A;  1OAH A;  4L3X A;  2R0N A;  3D9E A;  2CX9 A;  2E81 A;  3L1T A;  3II9 A;  1BUC A;  3MMO A;  2R0M A;  1EGE A;  3LG1 A;  2JIF A;  2UXW A;  2IX6 A;  2VIG A;  3D1I A;  4IRN A;  2OR0 A;  4P13 A;  2YYK A;  4RM7 A;  1EGC A;  1FS8 A;  3HWC A;  4Q4U A;  3P4T A;  3GM6 A;  3SWO A;  2ZAF A;  5K3H A;  2RDZ A;  3S7W A;  2DDH A;  2WBI A;  3FCJ A;  1UKW A;  2REH A;  2IX5 A;  3D9F A;  4O5M A;  3R7K A;  4L3Y A;  2RF7 A;  3BNH A;  3RKH A;  2VR0 A;  1RX0 A;  2YYM A;  2YYL A;  3X0Y A;  1FS9 A;  3D9D A;  1U8V A;  4G5E A;  4WJY A;  3BNG A;  4DOY A;  3FO3 A;  4KTO A;  3PFD A;  3X0X A;  3F29 A;  3OIB A;  2JBT A;  3EOM A;  3AFF A;  3TTB A;  5K3G A;  3OWM A;  4ZYJ A;  3B96 A;  1QDB A;  3M9V A;  4Q1O A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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