3GNCA

Crystal structure of glutaryl-coa dehydrogenase from burkholderia pseudomallei with fragment 6421
Total Genus 150
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
150
sequence length
391
structure length
380
Chain Sequence
AATFHWDDPLLLDQQLADDERMVRDAAHAYAQGKLAPRVTEAFRHETTDAAIFREMGEIGLLGPTIPEQYGGPGLDYVSYGLIAREVERVDSGYRSMMSVQSSLVMVPIFEFGSDAQKEKYLPKLATGEWIGCFGLTEPMVTRARKVPGGYSLSGSKMWITNSPIADVFVVWAKLDEDRDEIRGFILEKGCKGLSAPAIHGKVGLRASITGEIVLDEAFVPEENILPHVKGLRGPFTCLNSARYGIAWGALGAAESCWHIARQYVLDRKQFGRPLAANQLIQKKLADMQTEITLGLQGVLRLGRMKDEGTAAVEITSIMKRNSCGKALDIARLARDMLGGNGDEFGVARHLVNLEVVNTYEGTHDIHALILGRAQTGIQA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords Glutaryl-CoA dehydrogenase
publication title Probing conformational states of glutaryl-CoA dehydrogenase by fragment screening.
pubmed doi rcsb
source organism Burkholderia pseudomallei
total genus 150
structure length 380
sequence length 391
chains with identical sequence B, C, D
ec nomenclature ec 1.3.99.7: Transferred entry: 1.3.8.6.
pdb deposition date 2009-03-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00441 Acyl-CoA_dh_1 Acyl-CoA dehydrogenase, C-terminal domain
A PF02770 Acyl-CoA_dh_M Acyl-CoA dehydrogenase, middle domain
A PF02771 Acyl-CoA_dh_N Acyl-CoA dehydrogenase, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.540.10 Mainly Alpha Orthogonal Bundle Butyryl-Coa Dehydrogenase, subunit A; domain 1 Acyl-CoA dehydrogenase/oxidase, N-terminal domain 3gncA01
1.20.140.10 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A; domain 3 Butyryl-CoA Dehydrogenase, subunit A, domain 3 3gncA03
2.40.110.10 Mainly Beta Beta Barrel Butyryl-CoA Dehydrogenase, subunit A; domain 2 Butyryl-CoA Dehydrogenase, subunit A, domain 2 3gncA02
3GQTA 3TORA 3BNJA 2RFQA 3D9FA 1EGEA 3SWOA 3MXLA 2C12A 3AFFA 4ZYJA 4IV6A 4X28A 2J7AA 1RX0A 1FS7A 2YYKA 3EOMA 1JQIA 2JBSA 4O5MA 1T9GA 4NXLA 2YYJA 2WBIA 4JEKA 3OWAA 4L1FA 5K3JA 4ZXVA 3MPIA 3SF6A 2DVLA 1QDBA 2R0MA 3AFEA 3TTBA 3BNFA 4DOYA 2YYLA 4OO2A 3BNGA 4W9UA 3MDDA 2E81A 3EONA 4XVXA 3LG1A 3P4TA 4IRNA 4M9AA 3X0YA 3MKHA 3UU9A 1SIQA 3GM6A 3FCJA 4KCFA 4Q17A 2REHA 1IS2A 3MDEA 5K3IA 3LGQA 2ZO5A 3MPJA 4L38A 1FS9A 1OAHA 2OR0A 4Q5CA 1WS9A 1UDYA 3D1IA 4X28C 4Q1OA 2IX6A 3B96A 1UKWA 3PFDA 5K3HA 3R7KA 4HR3A 2RF7A 1W07A 4WJYA 2OT4A 2JIFA 2YYGA 3D9EA 3NF4A 2PG0A 1U8VA 3L1TA 4U83A 3D9DA 2EBAA 2YYMA 1SIRA 2C0UA 3OWMA 2D29A 1EGDA 2DDHA 4Q0TA 2A1TA 1BUCA 1IVHA 2JBTA 2Z1QA 2E80A 1EGCA 4G5EA 1GU6A 3F29A 4KTOA 2R0NA 3GNCA 2YYIA 4L3XA 3FO3A 3D9GA 1R2JA 2VIGA 2VR0A 2RDZA 4L3ZA 2ZAFA 4N5FA 3MMOA 4P13A 3S7WA 3BNHA 3M9VA 4RM7A 3UBRA 2CX9A 2JBRA 3X0XA 2UXWA 4L3YA 4Q5BA 2IX5A 1FS8A 5K3GA 3RKHA 3SCEA 3OIBA 3SXQA 3D6BA 3HWCA 4Q4UA 2FONA 3II9A
chains in the Genus database with same CATH superfamily
3GQTA 3TORA 4MPNA 3BNJA 2RFQA 3D9FA 1EGEA 4MP2A 1RJ1A 3SWOA 2CJ4A 3MXLA 2C12A 3AFFA 4ZYJA 2CJ6A 2F6LA 4IV6A 4FF2A 1Y8OA 2Q8IA 3U33A 4X28A 2J7AA 1RX0A 1K93A 1FS7A 2YYKA 1XFXA 3EOMA 1JQIA 2JBSA 2HJNA 2OJQA 3KMLA 4O5MA 1T9GA 4J1VA 4NXLA 2YYJA 5BRMA 3C3LA 2WBIA 3CRKA 4FF1A 4JEKA 3OWAA 1XFUA 4L1FA 1R3BA 1SC5A 2AO2A 4MPCA 2BU7A 5K3JA 4ZXVA 2YGWA 3D2RA 3MPIA 3SF6A 2ZDXA 2DVLA 1RJ4A 3DJLA 1QDBA 2R0MA 3AFEA 2Q8GA 3TTBA 4F0XA 3BNFA 4DOYA 5GJVE 1Y0VA 2LFWA 2Q8FA 2YYLA 1JM6A 4OO2A 5M4PA 3BNGA 4E02A 4W9UA 3Q24A 3MDDA 1XG2B 2FP2A 2E81A 4QICA 5J71A 3EONA 4XVXA 3VADA 3LG1A 1XFYA 3P4TA 4IRNA 4M9AA 5M4KA 3X0YA 3MKHA 3UU9A 1SIQA 3GM6A 3FCJA 4KCFA 4Q17A 4V26A 4FF3A 2REHA 3CRLA 4P79A 3VKHA 3Q23A 1IS2A 1K90A 3MDEA 5K3IA 3LGQA 2OEVA 2ZO5A 3MPJA 4L38A 1FS9A 1OAHA 2CJ5A 2OR0A 4MPEA 4V25A 2Q8HA 3CE2A 1WS9A 2R05A 4Q5CA 5J6AA 1UDYA 3D1IA 4X28C 4Q1OA 1Y8PA 2XQRB 2IX6A 4KSFA 3B96A 1UKWA 3PFDA 2PO4A 3Q0AA 3N0RA 5M4MA 5K3HA 3R7KA 4HR3A 1PI1A 2E0AA 2RF7A 4LQSB 5B6BA 2PNRA 1Y8NA 5EZ3A 1W07A 4WJYA 2OT4A 1GJVA 2EC5A 2JIFA 4G97A 2VF1A 3D9EA 3NF4A 2PG0A 1U8VA 2XS8A 1X91A 2R03A 2YYGA 4U83A 3L1TA 5B5VA 4E00A 5BRKA 3D9DA 2EBAA 1GKXA 2YYMA 1SIRA 2C0UA 3OWMA 4LQQB 2D29A 2ZKJA 1EGDA 2DDHA 4Q0TA 4FZ4A 2A1TA 1BUCA 1XFVA 1X90A 2R02A 1IVHA 2JBTA 2Z1QA 2EBFX 4AKGA 2BU8A 1EGCA 1XFWA 2BU2A 2BU6A 2E80A 2XS1A 4G5EA 1X8ZA 1GU6A 3F29A 4KTOA 2R0NA 3GNCA 2YYIA 1K8TA 4H85A 4JIOA 4FF4A 4L3XA 4AKHA 3FO3A 3D9GA 4H81A 1R2JA 2BU5A 2VIGA 2VR0A 2RDZA 4DZYA 4AKIA 4L3ZA 2ZAFA 4N5FA 3MMOA 3TZ2A 4AI6A 4P13A 3S7WA 4KSAA 2AZEA 3BNHA 2EBHX 1XFZA 2CJ7A 2FP1A 3M9VA 4RM7A 1SK6A 2GBBA 2ZDYA 4KS9A 3UBRA 2CX9A 3Q22A 1GKZA 4H7QA 2JBRA 3X0XA 4MP7A 2UXWA 5GJWE 2QR4A 1LVCA 4JIZA 4E01A 4HKSA 3VKGA 4L3YA 4Q5BA 2IX5A 1FS8A 5K3GA 1RP3A 3RKHA 3SCEA 4HKRA 3OIBA 3X29A 1S26A 1PK0A 2CJ8A 3TZ4A 3SXQA 3C46A 3D6BA 3HWCA 4Q4UA 2BTZA 2FONA 3II9A 3TZ5A 2OEXA 5M4NA 3TZ0A 3C2PA 5B5WA
chains in the Genus database with same CATH topology
3GQTA 3TORA 3BNJA 2RFQA 3D9FA 1EGEA 3SWOA 3MXLA 2C12A 3AFFA 4ZYJA 4IV6A 4X28A 2J7AA 1RX0A 1FS7A 2YYKA 3EOMA 1JQIA 2JBSA 4O5MA 1T9GA 4NXLA 2YYJA 2WBIA 4JEKA 3OWAA 4L1FA 5K3JA 4ZXVA 3MPIA 3SF6A 2DVLA 1QDBA 2R0MA 3AFEA 3TTBA 3BNFA 4DOYA 2YYLA 4OO2A 3BNGA 4W9UA 3MDDA 2E81A 3EONA 4XVXA 3LG1A 3P4TA 4IRNA 4M9AA 3X0YA 3MKHA 3UU9A 1SIQA 3GM6A 3FCJA 4KCFA 4Q17A 2REHA 1IS2A 3MDEA 5K3IA 3LGQA 2ZO5A 3MPJA 4L38A 1FS9A 1OAHA 2OR0A 4Q5CA 1WS9A 1UDYA 3D1IA 4X28C 4Q1OA 2IX6A 3B96A 1UKWA 3PFDA 5K3HA 3R7KA 4HR3A 2RF7A 1W07A 4WJYA 2OT4A 2JIFA 2YYGA 3D9EA 3NF4A 2PG0A 1U8VA 3L1TA 4U83A 3D9DA 2EBAA 2YYMA 1SIRA 2C0UA 3OWMA 2D29A 1EGDA 2DDHA 4Q0TA 2A1TA 1BUCA 1IVHA 2JBTA 2Z1QA 2E80A 1EGCA 4G5EA 1GU6A 3F29A 4KTOA 2R0NA 3GNCA 2YYIA 4L3XA 3FO3A 3D9GA 1R2JA 2VIGA 2VR0A 2RDZA 4L3ZA 2ZAFA 4N5FA 3MMOA 4P13A 3S7WA 3BNHA 3M9VA 4RM7A 3UBRA 2CX9A 2JBRA 3X0XA 2UXWA 4L3YA 4Q5BA 2IX5A 1FS8A 5K3GA 3RKHA 3SCEA 3OIBA 3SXQA 3D6BA 3HWCA 4Q4UA 2FONA 3II9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3GQT A;  3TOR A;  3BNJ A;  2RFQ A;  3D9F A;  1EGE A;  3SWO A;  3MXL A;  2C12 A;  3AFF A;  4ZYJ A;  4IV6 A;  4X28 A;  2J7A A;  1RX0 A;  1FS7 A;  2YYK A;  3EOM A;  1JQI A;  2JBS A;  4O5M A;  1T9G A;  4NXL A;  2YYJ A;  2WBI A;  4JEK A;  3OWA A;  4L1F A;  5K3J A;  4ZXV A;  3MPI A;  3SF6 A;  2DVL A;  1QDB A;  2R0M A;  3AFE A;  3TTB A;  3BNF A;  4DOY A;  2YYL A;  4OO2 A;  3BNG A;  4W9U A;  3MDD A;  2E81 A;  3EON A;  4XVX A;  3LG1 A;  3P4T A;  4IRN A;  4M9A A;  3X0Y A;  3MKH A;  3UU9 A;  1SIQ A;  3GM6 A;  3FCJ A;  4KCF A;  4Q17 A;  2REH A;  1IS2 A;  3MDE A;  5K3I A;  3LGQ A;  2ZO5 A;  3MPJ A;  4L38 A;  1FS9 A;  1OAH A;  2OR0 A;  4Q5C A;  1WS9 A;  1UDY A;  3D1I A;  4X28 C;  4Q1O A;  2IX6 A;  3B96 A;  1UKW A;  3PFD A;  5K3H A;  3R7K A;  4HR3 A;  2RF7 A;  1W07 A;  4WJY A;  2OT4 A;  2JIF A;  2YYG A;  3D9E A;  3NF4 A;  2PG0 A;  1U8V A;  3L1T A;  4U83 A;  3D9D A;  2EBA A;  2YYM A;  1SIR A;  2C0U A;  3OWM A;  2D29 A;  1EGD A;  2DDH A;  4Q0T A;  2A1T A;  1BUC A;  1IVH A;  2JBT A;  2Z1Q A;  2E80 A;  1EGC A;  4G5E A;  1GU6 A;  3F29 A;  4KTO A;  2R0N A;  3GNC A;  2YYI A;  4L3X A;  3FO3 A;  3D9G A;  1R2J A;  2VIG A;  2VR0 A;  2RDZ A;  4L3Z A;  2ZAF A;  4N5F A;  3MMO A;  4P13 A;  3S7W A;  3BNH A;  3M9V A;  4RM7 A;  3UBR A;  2CX9 A;  2JBR A;  3X0X A;  2UXW A;  4L3Y A;  4Q5B A;  2IX5 A;  1FS8 A;  5K3G A;  3RKH A;  3SCE A;  3OIB A;  3SXQ A;  3D6B A;  3HWC A;  4Q4U A;  2FON A;  3II9 A; 
#chains in the Genus database with same CATH topology
 3GQT A;  3TOR A;  4MPN A;  3BNJ A;  2RFQ A;  3D9F A;  1EGE A;  4MP2 A;  1RJ1 A;  3SWO A;  2CJ4 A;  3MXL A;  2C12 A;  3AFF A;  4ZYJ A;  2CJ6 A;  2F6L A;  4IV6 A;  4FF2 A;  1Y8O A;  2Q8I A;  3U33 A;  4X28 A;  2J7A A;  1RX0 A;  1K93 A;  1FS7 A;  2YYK A;  1XFX A;  3EOM A;  1JQI A;  2JBS A;  2HJN A;  2OJQ A;  3KML A;  4O5M A;  1T9G A;  4J1V A;  4NXL A;  2YYJ A;  5BRM A;  3C3L A;  2WBI A;  3CRK A;  4FF1 A;  4JEK A;  3OWA A;  1XFU A;  4L1F A;  1R3B A;  1SC5 A;  2AO2 A;  4MPC A;  2BU7 A;  5K3J A;  4ZXV A;  2YGW A;  3D2R A;  3MPI A;  3SF6 A;  2ZDX A;  2DVL A;  1RJ4 A;  3DJL A;  1QDB A;  2R0M A;  3AFE A;  2Q8G A;  3TTB A;  4F0X A;  3BNF A;  4DOY A;  5GJV E;  1Y0V A;  2LFW A;  2Q8F A;  2YYL A;  1JM6 A;  4OO2 A;  5M4P A;  3BNG A;  4E02 A;  4W9U A;  3Q24 A;  3MDD A;  1XG2 B;  2FP2 A;  2E81 A;  4QIC A;  5J71 A;  3EON A;  4XVX A;  3VAD A;  3LG1 A;  1XFY A;  3P4T A;  4IRN A;  4M9A A;  5M4K A;  3X0Y A;  3MKH A;  3UU9 A;  1SIQ A;  3GM6 A;  3FCJ A;  4KCF A;  4Q17 A;  4V26 A;  4FF3 A;  2REH A;  3CRL A;  4P79 A;  3VKH A;  3Q23 A;  1IS2 A;  1K90 A;  3MDE A;  5K3I A;  3LGQ A;  2OEV A;  2ZO5 A;  3MPJ A;  4L38 A;  1FS9 A;  1OAH A;  2CJ5 A;  2OR0 A;  4MPE A;  4V25 A;  2Q8H A;  3CE2 A;  1WS9 A;  2R05 A;  4Q5C A;  5J6A A;  1UDY A;  3D1I A;  4X28 C;  4Q1O A;  1Y8P A;  2XQR B;  2IX6 A;  4KSF A;  3B96 A;  1UKW A;  3PFD A;  2PO4 A;  3Q0A A;  3N0R A;  5M4M A;  5K3H A;  3R7K A;  4HR3 A;  1PI1 A;  2E0A A;  2RF7 A;  4LQS B;  5B6B A;  2PNR A;  1Y8N A;  5EZ3 A;  1W07 A;  4WJY A;  2OT4 A;  1GJV A;  2EC5 A;  2JIF A;  4G97 A;  2VF1 A;  3D9E A;  3NF4 A;  2PG0 A;  1U8V A;  2XS8 A;  1X91 A;  2R03 A;  2YYG A;  4U83 A;  3L1T A;  5B5V A;  4E00 A;  5BRK A;  3D9D A;  2EBA A;  1GKX A;  2YYM A;  1SIR A;  2C0U A;  3OWM A;  4LQQ B;  2D29 A;  2ZKJ A;  1EGD A;  2DDH A;  4Q0T A;  4FZ4 A;  2A1T A;  1BUC A;  1XFV A;  1X90 A;  2R02 A;  1IVH A;  2JBT A;  2Z1Q A;  2EBF X;  4AKG A;  2BU8 A;  1EGC A;  1XFW A;  2BU2 A;  2BU6 A;  2E80 A;  2XS1 A;  4G5E A;  1X8Z A;  1GU6 A;  3F29 A;  4KTO A;  2R0N A;  3GNC A;  2YYI A;  1K8T A;  4H85 A;  4JIO A;  4FF4 A;  4L3X A;  4AKH A;  3FO3 A;  3D9G A;  4H81 A;  1R2J A;  2BU5 A;  2VIG A;  2VR0 A;  2RDZ A;  4DZY A;  4AKI A;  4L3Z A;  2ZAF A;  4N5F A;  3MMO A;  3TZ2 A;  4AI6 A;  4P13 A;  3S7W A;  4KSA A;  2AZE A;  3BNH A;  2EBH X;  1XFZ A;  2CJ7 A;  2FP1 A;  3M9V A;  4RM7 A;  1SK6 A;  2GBB A;  2ZDY A;  4KS9 A;  3UBR A;  2CX9 A;  3Q22 A;  1GKZ A;  4H7Q A;  2JBR A;  3X0X A;  4MP7 A;  2UXW A;  5GJW E;  2QR4 A;  1LVC A;  4JIZ A;  4E01 A;  4HKS A;  3VKG A;  4L3Y A;  4Q5B A;  2IX5 A;  1FS8 A;  5K3G A;  1RP3 A;  3RKH A;  3SCE A;  4HKR A;  3OIB A;  3X29 A;  1S26 A;  1PK0 A;  2CJ8 A;  3TZ4 A;  3SXQ A;  3C46 A;  3D6B A;  3HWC A;  4Q4U A;  2BTZ A;  2FON A;  3II9 A;  3TZ5 A;  2OEX A;  5M4N A;  3TZ0 A;  3C2P A;  5B5W A; 
#chains in the Genus database with same CATH homology
 3GQT A;  3TOR A;  3BNJ A;  2RFQ A;  3D9F A;  1EGE A;  3SWO A;  3MXL A;  2C12 A;  3AFF A;  4ZYJ A;  4IV6 A;  4X28 A;  2J7A A;  1RX0 A;  1FS7 A;  2YYK A;  3EOM A;  1JQI A;  2JBS A;  4O5M A;  1T9G A;  4NXL A;  2YYJ A;  2WBI A;  4JEK A;  3OWA A;  4L1F A;  5K3J A;  4ZXV A;  3MPI A;  3SF6 A;  2DVL A;  1QDB A;  2R0M A;  3AFE A;  3TTB A;  3BNF A;  4DOY A;  2YYL A;  4OO2 A;  3BNG A;  4W9U A;  3MDD A;  2E81 A;  3EON A;  4XVX A;  3LG1 A;  3P4T A;  4IRN A;  4M9A A;  3X0Y A;  3MKH A;  3UU9 A;  1SIQ A;  3GM6 A;  3FCJ A;  4KCF A;  4Q17 A;  2REH A;  1IS2 A;  3MDE A;  5K3I A;  3LGQ A;  2ZO5 A;  3MPJ A;  4L38 A;  1FS9 A;  1OAH A;  2OR0 A;  4Q5C A;  1WS9 A;  1UDY A;  3D1I A;  4X28 C;  4Q1O A;  2IX6 A;  3B96 A;  1UKW A;  3PFD A;  5K3H A;  3R7K A;  4HR3 A;  2RF7 A;  1W07 A;  4WJY A;  2OT4 A;  2JIF A;  2YYG A;  3D9E A;  3NF4 A;  2PG0 A;  1U8V A;  3L1T A;  4U83 A;  3D9D A;  2EBA A;  2YYM A;  1SIR A;  2C0U A;  3OWM A;  2D29 A;  1EGD A;  2DDH A;  4Q0T A;  2A1T A;  1BUC A;  1IVH A;  2JBT A;  2Z1Q A;  2E80 A;  1EGC A;  4G5E A;  1GU6 A;  3F29 A;  4KTO A;  2R0N A;  3GNC A;  2YYI A;  4L3X A;  3FO3 A;  3D9G A;  1R2J A;  2VIG A;  2VR0 A;  2RDZ A;  4L3Z A;  2ZAF A;  4N5F A;  3MMO A;  4P13 A;  3S7W A;  3BNH A;  3M9V A;  4RM7 A;  3UBR A;  2CX9 A;  2JBR A;  3X0X A;  2UXW A;  4L3Y A;  4Q5B A;  2IX5 A;  1FS8 A;  5K3G A;  3RKH A;  3SCE A;  3OIB A;  3SXQ A;  3D6B A;  3HWC A;  4Q4U A;  2FON A;  3II9 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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