3MPJA

Structure of the glutaryl-coenzyme a dehydrogenase
Total Genus 151
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
151
sequence length
389
structure length
389
Chain Sequence
MDFNLSKELQMLQKEVRNFVNKKIVPFADQWDNENHFPYEEAVRPMGELGFFGTVIPEEYGGEGMDQGWLAAMIVTEEIARGSSALRVQLNMEVLGCAYTILTYGSEALKKKYVPKLSSAEFLGGFGITEPDAGSDVMAMSSTAEDKGDHWLLNGSKTWISNAAQADVLIYYAYTDKAAGSRGLSAFVIEPRNFPGIKTSNLEKLGSHASPTGELFLDNVKVPKENILGKPGDGARIVFGSLNHTRLSAAAGGVGLAQACLDAAIKYCNERRQFGKPIGDFQMNQDMIAQMAVEVEAARLLAYKAAAAKDEGRLNNGLDVAMAKYAAGEAVSKCANYAMRILGAYGYSTEYPVARFYRDAPTYYMVEGSANICKMIIALDQLGVRKANR
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural basis for promoting and preventing decarboxylation in glutaryl-coenzyme a dehydrogenases.
pubmed doi rcsb
molecule tags Oxidoreductase
source organism Desulfococcus multivorans
molecule keywords Glutaryl-CoA dehydrogenase
total genus 151
structure length 389
sequence length 389
chains with identical sequence B, D, E, F, G
ec nomenclature ec 1.3.99.32: Glutaryl-CoA dehydrogenase (acceptor).
pdb deposition date 2010-04-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00441 Acyl-CoA_dh_1 Acyl-CoA dehydrogenase, C-terminal domain
A PF02770 Acyl-CoA_dh_M Acyl-CoA dehydrogenase, middle domain
A PF02771 Acyl-CoA_dh_N Acyl-CoA dehydrogenase, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.540.10 Mainly Alpha Orthogonal Bundle Butyryl-Coa Dehydrogenase, subunit A; domain 1 Acyl-CoA dehydrogenase/oxidase, N-terminal domain 3mpjA01
1.20.140.10 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A; domain 3 Butyryl-CoA Dehydrogenase, subunit A, domain 3 3mpjA03
2.40.110.10 Mainly Beta Beta Barrel Butyryl-CoA Dehydrogenase, subunit A; domain 2 Butyryl-CoA Dehydrogenase, subunit A, domain 2 3mpjA02
3D9DA 4NXLA 3X0YA 2FONA 5K3HA 4IRNA 4Q0TA 3EONA 4ZYJA 2R0NA 4W9UA 4Q17A 3SF6A 2E81A 4XVXA 1UKWA 1EGEA 4Q5BA 2DVLA 3MPJA 2ZAFA 4O5MA 1SIRA 3GM6A 1RX0A 4L3YA 2OR0A 4L38A 2RDZA 2A1TA 2YYGA 3TTBA 1SIQA 2Z1QA 3D9EA 4M9AA 2JBTA 4N5FA 2JBSA 3SCEA 2VR0A 2WBIA 3MXLA 4L1FA 3L1TA 1IVHA 3OIBA 3B96A 1OAHA 3BNFA 4L3ZA 2IX5A 2JBRA 2C0UA 1GU6A 1EGCA 4HR3A 3FCJA 3SXQA 3MDDA 4U83A 4G5EA 3P4TA 3R7KA 3LG1A 3MDEA 1QDBA 3LGQA 4X28A 2YYKA 4Q5CA 1W07A 2R0MA 3MMOA 2IX6A 1FS7A 2PG0A 2YYLA 3MPIA 3D6BA 2REHA 5K3GA 1WS9A 3BNGA 2CX9A 4KTOA 3X0XA 3M9VA 4OO2A 3AFEA 3UBRA 3II9A 4ZXVA 1UDYA 1EGDA 4L3XA 3GNCA 2VIGA 2EBAA 3D9GA 1FS8A 3SWOA 1U8VA 4Q4UA 1BUCA 2YYJA 2J7AA 2D29A 2DDHA 2YYIA 4KCFA 3GQTA 5K3JA 2ZO5A 5K3IA 4Q1OA 3F29A 4P13A 3D9FA 1T9GA 2JIFA 4IV6A 3EOMA 4DOYA 3NF4A 4JEKA 4X28C 3TORA 1JQIA 3OWMA 3FO3A 3D1IA 3HWCA 2E80A 4WJYA 2YYMA 3BNJA 4RM7A 1IS2A 3OWAA 1FS9A 2RF7A 3MKHA 2C12A 3BNHA 3PFDA 2UXWA 2OT4A 1R2JA 3UU9A 3S7WA 3AFFA 2RFQA 3RKHA
chains in the Genus database with same CATH superfamily
1RJ1A 3D9DA 4NXLA 3X0YA 2FONA 5K3HA 4IRNA 4Q0TA 3EONA 4ZYJA 2R0NA 4W9UA 4Q17A 4MP2A 3SF6A 2E81A 2R03A 2Q8FA 4XVXA 1UKWA 4MPNA 1EGEA 1XFUA 2FP2A 4Q5BA 1LVCA 2DVLA 3MPJA 1S26A 2Q8HA 2ZAFA 4F0XA 4O5MA 1SIRA 4E00A 3GM6A 1RX0A 4P79A 4L3YA 2OR0A 4L38A 2RDZA 2A1TA 3DJLA 2YYGA 3TTBA 1PI1A 1SIQA 2AO2A 2Z1QA 3D9EA 2BU2A 2GBBA 4M9AA 2JBTA 4N5FA 3CRKA 5B6BA 2JBSA 3SCEA 2VF1A 2VR0A 1X8ZA 4H85A 2WBIA 3TZ5A 3MXLA 4L1FA 3L1TA 1IVHA 3OIBA 3B96A 1OAHA 3BNFA 1X91A 4KSFA 4L3ZA 1GJVA 2OEXA 2EBFX 2IX5A 2CJ7A 2JBRA 5GJWE 4V25A 3C46A 2R05A 5BRMA 2C0UA 1GU6A 1XG2B 1EGCA 4HR3A 2BTZA 3CRLA 3FCJA 3SXQA 3MDDA 4U83A 4G5EA 3KMLA 3P4TA 3R7KA 3LG1A 3MDEA 1QDBA 3LGQA 2HJNA 2YGWA 4X28A 1R3BA 2YYKA 3Q22A 2EC5A 4AKGA 4V26A 1RP3A 2ZDYA 4Q5CA 5BRKA 1W07A 3Q24A 4LQSB 2R0MA 3MMOA 2IX6A 1FS7A 2PG0A 1XFYA 2BU6A 2EBHX 2PO4A 2YYLA 4JIOA 5B5VA 3MPIA 3D6BA 2REHA 5B5WA 5K3GA 4FF1A 4AI6A 2LFWA 1WS9A 3VADA 3BNGA 4H81A 1Y8PA 3D2RA 4FF4A 2CX9A 4KTOA 3X0XA 4FF3A 2FP1A 3CE2A 3X29A 1RJ4A 3M9VA 3TZ0A 4G97A 1Y0VA 2CJ8A 4KSAA 4OO2A 4E02A 3AFEA 3UBRA 4FZ4A 2ZDXA 3II9A 4ZXVA 1UDYA 1EGDA 1JM6A 1XFZA 2PNRA 2CJ4A 2OJQA 4L3XA 1GKXA 3GNCA 2VIGA 2EBAA 4LQQB 3D9GA 1FS8A 3SWOA 1SK6A 4HKSA 1U8VA 1XFWA 4Q4UA 4QICA 1BUCA 2YYJA 2J7AA 2QR4A 3VKGA 2XS8A 2D29A 1XFVA 2DDHA 1Y8OA 2YYIA 5M4KA 4KCFA 3GQTA 2BU8A 2R02A 2XS1A 5K3JA 5J6AA 2BU5A 2ZO5A 1X90A 5K3IA 4Q1OA 3F29A 4P13A 3D9FA 1T9GA 1XFXA 2E0AA 2JIFA 2CJ5A 4IV6A 3U33A 3EOMA 4DOYA 3NF4A 4JEKA 4X28C 3TORA 5M4MA 4HKRA 1JQIA 4J1VA 3OWMA 5EZ3A 4DZYA 3FO3A 3C2PA 2Q8IA 2AZEA 3D1IA 3TZ2A 3TZ4A 4AKHA 4H7QA 3HWCA 1K90A 2E80A 2Q8GA 2XQRB 4WJYA 5M4PA 3Q23A 1K93A 2YYMA 2OEVA 3BNJA 4RM7A 5GJVE 1IS2A 2CJ6A 4KS9A 4E01A 3OWAA 1FS9A 2F6LA 1K8TA 2RF7A 3VKHA 3N0RA 3MKHA 2BU7A 3Q0AA 4FF2A 2C12A 1Y8NA 1GKZA 3BNHA 4MP7A 3C3LA 3PFDA 1SC5A 2UXWA 2OT4A 1R2JA 3UU9A 2ZKJA 3S7WA 5M4NA 3AFFA 4JIZA 2RFQA 3RKHA 4MPCA 4MPEA 5J71A 1PK0A 4AKIA
chains in the Genus database with same CATH topology
3D9DA 4NXLA 3X0YA 2FONA 5K3HA 4IRNA 4Q0TA 3EONA 4ZYJA 2R0NA 4W9UA 4Q17A 3SF6A 2E81A 4XVXA 1UKWA 1EGEA 4Q5BA 2DVLA 3MPJA 2ZAFA 4O5MA 1SIRA 3GM6A 1RX0A 4L3YA 2OR0A 4L38A 2RDZA 2A1TA 2YYGA 3TTBA 1SIQA 2Z1QA 3D9EA 4M9AA 2JBTA 4N5FA 2JBSA 3SCEA 2VR0A 2WBIA 3MXLA 4L1FA 3L1TA 1IVHA 3OIBA 3B96A 1OAHA 3BNFA 4L3ZA 2IX5A 2JBRA 2C0UA 1GU6A 1EGCA 4HR3A 3FCJA 3SXQA 3MDDA 4U83A 4G5EA 3P4TA 3R7KA 3LG1A 3MDEA 1QDBA 3LGQA 4X28A 2YYKA 4Q5CA 1W07A 2R0MA 3MMOA 2IX6A 1FS7A 2PG0A 2YYLA 3MPIA 3D6BA 2REHA 5K3GA 1WS9A 3BNGA 2CX9A 4KTOA 3X0XA 3M9VA 4OO2A 3AFEA 3UBRA 3II9A 4ZXVA 1UDYA 1EGDA 4L3XA 3GNCA 2VIGA 2EBAA 3D9GA 1FS8A 3SWOA 1U8VA 4Q4UA 1BUCA 2YYJA 2J7AA 2D29A 2DDHA 2YYIA 4KCFA 3GQTA 5K3JA 2ZO5A 5K3IA 4Q1OA 3F29A 4P13A 3D9FA 1T9GA 2JIFA 4IV6A 3EOMA 4DOYA 3NF4A 4JEKA 4X28C 3TORA 1JQIA 3OWMA 3FO3A 3D1IA 3HWCA 2E80A 4WJYA 2YYMA 3BNJA 4RM7A 1IS2A 3OWAA 1FS9A 2RF7A 3MKHA 2C12A 3BNHA 3PFDA 2UXWA 2OT4A 1R2JA 3UU9A 3S7WA 3AFFA 2RFQA 3RKHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3D9D A;  4NXL A;  3X0Y A;  2FON A;  5K3H A;  4IRN A;  4Q0T A;  3EON A;  4ZYJ A;  2R0N A;  4W9U A;  4Q17 A;  3SF6 A;  2E81 A;  4XVX A;  1UKW A;  1EGE A;  4Q5B A;  2DVL A;  3MPJ A;  2ZAF A;  4O5M A;  1SIR A;  3GM6 A;  1RX0 A;  4L3Y A;  2OR0 A;  4L38 A;  2RDZ A;  2A1T A;  2YYG A;  3TTB A;  1SIQ A;  2Z1Q A;  3D9E A;  4M9A A;  2JBT A;  4N5F A;  2JBS A;  3SCE A;  2VR0 A;  2WBI A;  3MXL A;  4L1F A;  3L1T A;  1IVH A;  3OIB A;  3B96 A;  1OAH A;  3BNF A;  4L3Z A;  2IX5 A;  2JBR A;  2C0U A;  1GU6 A;  1EGC A;  4HR3 A;  3FCJ A;  3SXQ A;  3MDD A;  4U83 A;  4G5E A;  3P4T A;  3R7K A;  3LG1 A;  3MDE A;  1QDB A;  3LGQ A;  4X28 A;  2YYK A;  4Q5C A;  1W07 A;  2R0M A;  3MMO A;  2IX6 A;  1FS7 A;  2PG0 A;  2YYL A;  3MPI A;  3D6B A;  2REH A;  5K3G A;  1WS9 A;  3BNG A;  2CX9 A;  4KTO A;  3X0X A;  3M9V A;  4OO2 A;  3AFE A;  3UBR A;  3II9 A;  4ZXV A;  1UDY A;  1EGD A;  4L3X A;  3GNC A;  2VIG A;  2EBA A;  3D9G A;  1FS8 A;  3SWO A;  1U8V A;  4Q4U A;  1BUC A;  2YYJ A;  2J7A A;  2D29 A;  2DDH A;  2YYI A;  4KCF A;  3GQT A;  5K3J A;  2ZO5 A;  5K3I A;  4Q1O A;  3F29 A;  4P13 A;  3D9F A;  1T9G A;  2JIF A;  4IV6 A;  3EOM A;  4DOY A;  3NF4 A;  4JEK A;  4X28 C;  3TOR A;  1JQI A;  3OWM A;  3FO3 A;  3D1I A;  3HWC A;  2E80 A;  4WJY A;  2YYM A;  3BNJ A;  4RM7 A;  1IS2 A;  3OWA A;  1FS9 A;  2RF7 A;  3MKH A;  2C12 A;  3BNH A;  3PFD A;  2UXW A;  2OT4 A;  1R2J A;  3UU9 A;  3S7W A;  3AFF A;  2RFQ A;  3RKH A; 
#chains in the Genus database with same CATH topology
 1RJ1 A;  3D9D A;  4NXL A;  3X0Y A;  2FON A;  5K3H A;  4IRN A;  4Q0T A;  3EON A;  4ZYJ A;  2R0N A;  4W9U A;  4Q17 A;  4MP2 A;  3SF6 A;  2E81 A;  2R03 A;  2Q8F A;  4XVX A;  1UKW A;  4MPN A;  1EGE A;  1XFU A;  2FP2 A;  4Q5B A;  1LVC A;  2DVL A;  3MPJ A;  1S26 A;  2Q8H A;  2ZAF A;  4F0X A;  4O5M A;  1SIR A;  4E00 A;  3GM6 A;  1RX0 A;  4P79 A;  4L3Y A;  2OR0 A;  4L38 A;  2RDZ A;  2A1T A;  3DJL A;  2YYG A;  3TTB A;  1PI1 A;  1SIQ A;  2AO2 A;  2Z1Q A;  3D9E A;  2BU2 A;  2GBB A;  4M9A A;  2JBT A;  4N5F A;  3CRK A;  5B6B A;  2JBS A;  3SCE A;  2VF1 A;  2VR0 A;  1X8Z A;  4H85 A;  2WBI A;  3TZ5 A;  3MXL A;  4L1F A;  3L1T A;  1IVH A;  3OIB A;  3B96 A;  1OAH A;  3BNF A;  1X91 A;  4KSF A;  4L3Z A;  1GJV A;  2OEX A;  2EBF X;  2IX5 A;  2CJ7 A;  2JBR A;  5GJW E;  4V25 A;  3C46 A;  2R05 A;  5BRM A;  2C0U A;  1GU6 A;  1XG2 B;  1EGC A;  4HR3 A;  2BTZ A;  3CRL A;  3FCJ A;  3SXQ A;  3MDD A;  4U83 A;  4G5E A;  3KML A;  3P4T A;  3R7K A;  3LG1 A;  3MDE A;  1QDB A;  3LGQ A;  2HJN A;  2YGW A;  4X28 A;  1R3B A;  2YYK A;  3Q22 A;  2EC5 A;  4AKG A;  4V26 A;  1RP3 A;  2ZDY A;  4Q5C A;  5BRK A;  1W07 A;  3Q24 A;  4LQS B;  2R0M A;  3MMO A;  2IX6 A;  1FS7 A;  2PG0 A;  1XFY A;  2BU6 A;  2EBH X;  2PO4 A;  2YYL A;  4JIO A;  5B5V A;  3MPI A;  3D6B A;  2REH A;  5B5W A;  5K3G A;  4FF1 A;  4AI6 A;  2LFW A;  1WS9 A;  3VAD A;  3BNG A;  4H81 A;  1Y8P A;  3D2R A;  4FF4 A;  2CX9 A;  4KTO A;  3X0X A;  4FF3 A;  2FP1 A;  3CE2 A;  3X29 A;  1RJ4 A;  3M9V A;  3TZ0 A;  4G97 A;  1Y0V A;  2CJ8 A;  4KSA A;  4OO2 A;  4E02 A;  3AFE A;  3UBR A;  4FZ4 A;  2ZDX A;  3II9 A;  4ZXV A;  1UDY A;  1EGD A;  1JM6 A;  1XFZ A;  2PNR A;  2CJ4 A;  2OJQ A;  4L3X A;  1GKX A;  3GNC A;  2VIG A;  2EBA A;  4LQQ B;  3D9G A;  1FS8 A;  3SWO A;  1SK6 A;  4HKS A;  1U8V A;  1XFW A;  4Q4U A;  4QIC A;  1BUC A;  2YYJ A;  2J7A A;  2QR4 A;  3VKG A;  2XS8 A;  2D29 A;  1XFV A;  2DDH A;  1Y8O A;  2YYI A;  5M4K A;  4KCF A;  3GQT A;  2BU8 A;  2R02 A;  2XS1 A;  5K3J A;  5J6A A;  2BU5 A;  2ZO5 A;  1X90 A;  5K3I A;  4Q1O A;  3F29 A;  4P13 A;  3D9F A;  1T9G A;  1XFX A;  2E0A A;  2JIF A;  2CJ5 A;  4IV6 A;  3U33 A;  3EOM A;  4DOY A;  3NF4 A;  4JEK A;  4X28 C;  3TOR A;  5M4M A;  4HKR A;  1JQI A;  4J1V A;  3OWM A;  5EZ3 A;  4DZY A;  3FO3 A;  3C2P A;  2Q8I A;  2AZE A;  3D1I A;  3TZ2 A;  3TZ4 A;  4AKH A;  4H7Q A;  3HWC A;  1K90 A;  2E80 A;  2Q8G A;  2XQR B;  4WJY A;  5M4P A;  3Q23 A;  1K93 A;  2YYM A;  2OEV A;  3BNJ A;  4RM7 A;  5GJV E;  1IS2 A;  2CJ6 A;  4KS9 A;  4E01 A;  3OWA A;  1FS9 A;  2F6L A;  1K8T A;  2RF7 A;  3VKH A;  3N0R A;  3MKH A;  2BU7 A;  3Q0A A;  4FF2 A;  2C12 A;  1Y8N A;  1GKZ A;  3BNH A;  4MP7 A;  3C3L A;  3PFD A;  1SC5 A;  2UXW A;  2OT4 A;  1R2J A;  3UU9 A;  2ZKJ A;  3S7W A;  5M4N A;  3AFF A;  4JIZ A;  2RFQ A;  3RKH A;  4MPC A;  4MPE A;  5J71 A;  1PK0 A;  4AKI A; 
#chains in the Genus database with same CATH homology
 3D9D A;  4NXL A;  3X0Y A;  2FON A;  5K3H A;  4IRN A;  4Q0T A;  3EON A;  4ZYJ A;  2R0N A;  4W9U A;  4Q17 A;  3SF6 A;  2E81 A;  4XVX A;  1UKW A;  1EGE A;  4Q5B A;  2DVL A;  3MPJ A;  2ZAF A;  4O5M A;  1SIR A;  3GM6 A;  1RX0 A;  4L3Y A;  2OR0 A;  4L38 A;  2RDZ A;  2A1T A;  2YYG A;  3TTB A;  1SIQ A;  2Z1Q A;  3D9E A;  4M9A A;  2JBT A;  4N5F A;  2JBS A;  3SCE A;  2VR0 A;  2WBI A;  3MXL A;  4L1F A;  3L1T A;  1IVH A;  3OIB A;  3B96 A;  1OAH A;  3BNF A;  4L3Z A;  2IX5 A;  2JBR A;  2C0U A;  1GU6 A;  1EGC A;  4HR3 A;  3FCJ A;  3SXQ A;  3MDD A;  4U83 A;  4G5E A;  3P4T A;  3R7K A;  3LG1 A;  3MDE A;  1QDB A;  3LGQ A;  4X28 A;  2YYK A;  4Q5C A;  1W07 A;  2R0M A;  3MMO A;  2IX6 A;  1FS7 A;  2PG0 A;  2YYL A;  3MPI A;  3D6B A;  2REH A;  5K3G A;  1WS9 A;  3BNG A;  2CX9 A;  4KTO A;  3X0X A;  3M9V A;  4OO2 A;  3AFE A;  3UBR A;  3II9 A;  4ZXV A;  1UDY A;  1EGD A;  4L3X A;  3GNC A;  2VIG A;  2EBA A;  3D9G A;  1FS8 A;  3SWO A;  1U8V A;  4Q4U A;  1BUC A;  2YYJ A;  2J7A A;  2D29 A;  2DDH A;  2YYI A;  4KCF A;  3GQT A;  5K3J A;  2ZO5 A;  5K3I A;  4Q1O A;  3F29 A;  4P13 A;  3D9F A;  1T9G A;  2JIF A;  4IV6 A;  3EOM A;  4DOY A;  3NF4 A;  4JEK A;  4X28 C;  3TOR A;  1JQI A;  3OWM A;  3FO3 A;  3D1I A;  3HWC A;  2E80 A;  4WJY A;  2YYM A;  3BNJ A;  4RM7 A;  1IS2 A;  3OWA A;  1FS9 A;  2RF7 A;  3MKH A;  2C12 A;  3BNH A;  3PFD A;  2UXW A;  2OT4 A;  1R2J A;  3UU9 A;  3S7W A;  3AFF A;  2RFQ A;  3RKH A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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