3MPJA

Structure of the glutaryl-coenzyme a dehydrogenase
Total Genus 151
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
151
sequence length
389
structure length
389
Chain Sequence
MDFNLSKELQMLQKEVRNFVNKKIVPFADQWDNENHFPYEEAVRPMGELGFFGTVIPEEYGGEGMDQGWLAAMIVTEEIARGSSALRVQLNMEVLGCAYTILTYGSEALKKKYVPKLSSAEFLGGFGITEPDAGSDVMAMSSTAEDKGDHWLLNGSKTWISNAAQADVLIYYAYTDKAAGSRGLSAFVIEPRNFPGIKTSNLEKLGSHASPTGELFLDNVKVPKENILGKPGDGARIVFGSLNHTRLSAAAGGVGLAQACLDAAIKYCNERRQFGKPIGDFQMNQDMIAQMAVEVEAARLLAYKAAAAKDEGRLNNGLDVAMAKYAAGEAVSKCANYAMRILGAYGYSTEYPVARFYRDAPTYYMVEGSANICKMIIALDQLGVRKANR
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Glutaryl-CoA dehydrogenase
publication title Structural basis for promoting and preventing decarboxylation in glutaryl-coenzyme a dehydrogenases.
pubmed doi rcsb
source organism Desulfococcus multivorans
molecule tags Oxidoreductase
total genus 151
structure length 389
sequence length 389
chains with identical sequence B, D, E, F, G
ec nomenclature ec 1.3.99.32: Glutaryl-CoA dehydrogenase (acceptor).
pdb deposition date 2010-04-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00441 Acyl-CoA_dh_1 Acyl-CoA dehydrogenase, C-terminal domain
A PF02770 Acyl-CoA_dh_M Acyl-CoA dehydrogenase, middle domain
A PF02771 Acyl-CoA_dh_N Acyl-CoA dehydrogenase, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.540.10 Mainly Alpha Orthogonal Bundle Butyryl-Coa Dehydrogenase, subunit A; domain 1 Acyl-CoA dehydrogenase/oxidase, N-terminal domain 3mpjA01
1.20.140.10 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A; domain 3 Butyryl-CoA Dehydrogenase, subunit A, domain 3 3mpjA03
2.40.110.10 Mainly Beta Beta Barrel Butyryl-CoA Dehydrogenase, subunit A; domain 2 Butyryl-CoA Dehydrogenase, subunit A, domain 2 3mpjA02
3D6BA 3D9FA 4L3YA 4XVXA 4Q0TA 3II9A 4ZYJA 4Q17A 2IX6A 3BNGA 1WS9A 3MMOA 3TTBA 2RFQA 2YYMA 4RM7A 2UXWA 2WBIA 4U83A 2ZO5A 3F29A 5K3JA 3GQTA 2Z1QA 4WJYA 3SCEA 1SIQA 1IS2A 2JBSA 3OIBA 2E80A 4L38A 4L1FA 2D29A 2C12A 3FCJA 4KCFA 3SF6A 3MPIA 1UDYA 2JBTA 3AFFA 2PG0A 2DDHA 1BUCA 2FONA 1SIRA 1GU6A 2R0MA 3EONA 4O5MA 3M9VA 1UKWA 3FO3A 4JEKA 4X28C 1EGDA 4IRNA 3AFEA 1IVHA 2IX5A 4OO2A 3PFDA 3D9EA 2YYIA 4N5FA 3LG1A 3UU9A 3X0XA 3L1TA 3X0YA 4Q1OA 2RDZA 4W9UA 3MDEA 1RX0A 2EBAA 1FS9A 3UBRA 3MPJA 4IV6A 1EGCA 3EOMA 3SWOA 3OWMA 4L3ZA 4Q5BA 4L3XA 1JQIA 1W07A 2JIFA 4P13A 2OT4A 3RKHA 3TORA 2R0NA 2E81A 2VR0A 3HWCA 2REHA 4Q5CA 3BNJA 3D1IA 3LGQA 1U8VA 4X28A 3D9DA 4HR3A 4DOYA 3B96A 3R7KA 1FS8A 2YYKA 2J7AA 1T9GA 1EGEA 3GNCA 3MKHA 3SXQA 2VIGA 3OWAA 1QDBA 4Q4UA 4M9AA 2C0UA 4ZXVA 2YYGA 5K3GA 3D9GA 2A1TA 3P4TA 2CX9A 1FS7A 2OR0A 3BNHA 3S7WA 4G5EA 2YYLA 3MXLA 2ZAFA 2RF7A 5K3HA 3MDDA 1OAHA 4KTOA 2DVLA 2JBRA 1R2JA 5K3IA 3GM6A 2YYJA 3NF4A 3BNFA 4NXLA
chains in the Genus database with same CATH superfamily
2R03A 3D6BA 2Q8FA 4LQSB 2E0AA 4KS9A 3D9FA 4L3YA 3VKGA 1XFYA 5J71A 4XVXA 3N0RA 3II9A 4Q0TA 4ZYJA 1K8TA 4Q17A 2IX6A 3BNGA 1WS9A 2HJNA 3MMOA 2RFQA 4V26A 3TTBA 2YYMA 3TZ2A 4FF2A 4FF4A 4RM7A 3CRKA 4FF3A 2UXWA 2WBIA 3Q22A 4U83A 3U33A 3VKHA 2CJ6A 2ZO5A 3F29A 5K3JA 4KSFA 3GQTA 2Z1QA 1K90A 3C2PA 3Q0AA 2EBHX 4WJYA 3SCEA 1SIQA 4MPNA 1Y0VA 4MP7A 1IS2A 2JBSA 3OIBA 2E80A 4L38A 4L1FA 2CJ8A 3TZ0A 2D29A 1X8ZA 2VF1A 2BTZA 1Y8NA 1X90A 1LVCA 5B5VA 5BRMA 2C12A 3FCJA 4KCFA 3SF6A 2AO2A 3MPIA 4V25A 1UDYA 2JBTA 4FZ4A 5BRKA 2ZDYA 3AFFA 4JIOA 1GKZA 2CJ5A 2PG0A 2CJ7A 2OEVA 2DDHA 1BUCA 2OEXA 2FONA 1SIRA 1GU6A 2LFWA 2Q8IA 2R0MA 4F0XA 2EC5A 5EZ3A 2EBFX 2XS1A 3EONA 4O5MA 3M9VA 1UKWA 1PK0A 3FO3A 5M4PA 4JEKA 4X28C 1EGDA 4IRNA 3AFEA 1XFZA 1X91A 2GBBA 3D2RA 4J1VA 3TZ4A 4E01A 1IVHA 2IX5A 5GJVE 4OO2A 5M4NA 3Q24A 3PFDA 3D9EA 3VADA 2YYIA 4N5FA 3LG1A 3UU9A 3X0XA 3L1TA 3X0YA 4Q1OA 2RDZA 4W9UA 3MDEA 1RX0A 2EBAA 1FS9A 1XFXA 2FP1A 3MPJA 3UBRA 4IV6A 1EGCA 3EOMA 3SWOA 2R05A 3OWMA 4L3ZA 4MPCA 4Q5BA 2YGWA 1XFUA 1JQIA 4L3XA 1W07A 1K93A 2BU6A 4H7QA 2BU8A 2JIFA 4P13A 2OT4A 3RKHA 5J6AA 3TORA 5B5WA 1GJVA 1RJ1A 2R0NA 5M4KA 5GJWE 2Q8HA 2E81A 2VR0A 3HWCA 2REHA 2XS8A 1SK6A 4Q5CA 4E02A 1XFWA 4E00A 3BNJA 3D1IA 3LGQA 4P79A 2CJ4A 1U8VA 1RP3A 4X28A 5M4MA 3D9DA 4HR3A 4DOYA 3B96A 3R7KA 3TZ5A 2QR4A 4HKRA 4MPEA 1FS8A 4AKIA 1Y8PA 2YYKA 2BU2A 3Q23A 2J7AA 1T9GA 1EGEA 3GNCA 3MKHA 3SXQA 2VIGA 1Y8OA 3OWAA 2OJQA 1QDBA 4FF1A 4KSAA 5B6BA 4Q4UA 2F6LA 4M9AA 2C0UA 2Q8GA 4ZXVA 1XG2B 1XFVA 2YYGA 3CRLA 5K3GA 4LQQB 4QICA 3D9GA 1PI1A 4AKHA 2A1TA 2BU7A 3P4TA 4H85A 2CX9A 1FS7A 2OR0A 1JM6A 3BNHA 4DZYA 3CE2A 3S7WA 4G5EA 2R02A 2YYLA 2FP2A 3MXLA 2ZAFA 2RF7A 1RJ4A 5K3HA 3MDDA 1S26A 2ZKJA 4HKSA 4AKGA 1OAHA 4KTOA 2PNRA 3X29A 1GKXA 1SC5A 4H81A 2DVLA 4G97A 1R3BA 4AI6A 3DJLA 2JBRA 1R2JA 4MP2A 2PO4A 2XQRB 2BU5A 3C3LA 5K3IA 3GM6A 2AZEA 2YYJA 3C46A 3NF4A 3BNFA 3KMLA 4NXLA 4JIZA 2ZDXA
chains in the Genus database with same CATH topology
3D6BA 3D9FA 4L3YA 4XVXA 4Q0TA 3II9A 4ZYJA 4Q17A 2IX6A 3BNGA 1WS9A 3MMOA 3TTBA 2RFQA 2YYMA 4RM7A 2UXWA 2WBIA 4U83A 2ZO5A 3F29A 5K3JA 3GQTA 2Z1QA 4WJYA 3SCEA 1SIQA 1IS2A 2JBSA 3OIBA 2E80A 4L38A 4L1FA 2D29A 2C12A 3FCJA 4KCFA 3SF6A 3MPIA 1UDYA 2JBTA 3AFFA 2PG0A 2DDHA 1BUCA 2FONA 1SIRA 1GU6A 2R0MA 3EONA 4O5MA 3M9VA 1UKWA 3FO3A 4JEKA 4X28C 1EGDA 4IRNA 3AFEA 1IVHA 2IX5A 4OO2A 3PFDA 3D9EA 2YYIA 4N5FA 3LG1A 3UU9A 3X0XA 3L1TA 3X0YA 4Q1OA 2RDZA 4W9UA 3MDEA 1RX0A 2EBAA 1FS9A 3UBRA 3MPJA 4IV6A 1EGCA 3EOMA 3SWOA 3OWMA 4L3ZA 4Q5BA 4L3XA 1JQIA 1W07A 2JIFA 4P13A 2OT4A 3RKHA 3TORA 2R0NA 2E81A 2VR0A 3HWCA 2REHA 4Q5CA 3BNJA 3D1IA 3LGQA 1U8VA 4X28A 3D9DA 4HR3A 4DOYA 3B96A 3R7KA 1FS8A 2YYKA 2J7AA 1T9GA 1EGEA 3GNCA 3MKHA 3SXQA 2VIGA 3OWAA 1QDBA 4Q4UA 4M9AA 2C0UA 4ZXVA 2YYGA 5K3GA 3D9GA 2A1TA 3P4TA 2CX9A 1FS7A 2OR0A 3BNHA 3S7WA 4G5EA 2YYLA 3MXLA 2ZAFA 2RF7A 5K3HA 3MDDA 1OAHA 4KTOA 2DVLA 2JBRA 1R2JA 5K3IA 3GM6A 2YYJA 3NF4A 3BNFA 4NXLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3D6B A;  3D9F A;  4L3Y A;  4XVX A;  4Q0T A;  3II9 A;  4ZYJ A;  4Q17 A;  2IX6 A;  3BNG A;  1WS9 A;  3MMO A;  3TTB A;  2RFQ A;  2YYM A;  4RM7 A;  2UXW A;  2WBI A;  4U83 A;  2ZO5 A;  3F29 A;  5K3J A;  3GQT A;  2Z1Q A;  4WJY A;  3SCE A;  1SIQ A;  1IS2 A;  2JBS A;  3OIB A;  2E80 A;  4L38 A;  4L1F A;  2D29 A;  2C12 A;  3FCJ A;  4KCF A;  3SF6 A;  3MPI A;  1UDY A;  2JBT A;  3AFF A;  2PG0 A;  2DDH A;  1BUC A;  2FON A;  1SIR A;  1GU6 A;  2R0M A;  3EON A;  4O5M A;  3M9V A;  1UKW A;  3FO3 A;  4JEK A;  4X28 C;  1EGD A;  4IRN A;  3AFE A;  1IVH A;  2IX5 A;  4OO2 A;  3PFD A;  3D9E A;  2YYI A;  4N5F A;  3LG1 A;  3UU9 A;  3X0X A;  3L1T A;  3X0Y A;  4Q1O A;  2RDZ A;  4W9U A;  3MDE A;  1RX0 A;  2EBA A;  1FS9 A;  3UBR A;  3MPJ A;  4IV6 A;  1EGC A;  3EOM A;  3SWO A;  3OWM A;  4L3Z A;  4Q5B A;  4L3X A;  1JQI A;  1W07 A;  2JIF A;  4P13 A;  2OT4 A;  3RKH A;  3TOR A;  2R0N A;  2E81 A;  2VR0 A;  3HWC A;  2REH A;  4Q5C A;  3BNJ A;  3D1I A;  3LGQ A;  1U8V A;  4X28 A;  3D9D A;  4HR3 A;  4DOY A;  3B96 A;  3R7K A;  1FS8 A;  2YYK A;  2J7A A;  1T9G A;  1EGE A;  3GNC A;  3MKH A;  3SXQ A;  2VIG A;  3OWA A;  1QDB A;  4Q4U A;  4M9A A;  2C0U A;  4ZXV A;  2YYG A;  5K3G A;  3D9G A;  2A1T A;  3P4T A;  2CX9 A;  1FS7 A;  2OR0 A;  3BNH A;  3S7W A;  4G5E A;  2YYL A;  3MXL A;  2ZAF A;  2RF7 A;  5K3H A;  3MDD A;  1OAH A;  4KTO A;  2DVL A;  2JBR A;  1R2J A;  5K3I A;  3GM6 A;  2YYJ A;  3NF4 A;  3BNF A;  4NXL A; 
#chains in the Genus database with same CATH topology
 2R03 A;  3D6B A;  2Q8F A;  4LQS B;  2E0A A;  4KS9 A;  3D9F A;  4L3Y A;  3VKG A;  1XFY A;  5J71 A;  4XVX A;  3N0R A;  3II9 A;  4Q0T A;  4ZYJ A;  1K8T A;  4Q17 A;  2IX6 A;  3BNG A;  1WS9 A;  2HJN A;  3MMO A;  2RFQ A;  4V26 A;  3TTB A;  2YYM A;  3TZ2 A;  4FF2 A;  4FF4 A;  4RM7 A;  3CRK A;  4FF3 A;  2UXW A;  2WBI A;  3Q22 A;  4U83 A;  3U33 A;  3VKH A;  2CJ6 A;  2ZO5 A;  3F29 A;  5K3J A;  4KSF A;  3GQT A;  2Z1Q A;  1K90 A;  3C2P A;  3Q0A A;  2EBH X;  4WJY A;  3SCE A;  1SIQ A;  4MPN A;  1Y0V A;  4MP7 A;  1IS2 A;  2JBS A;  3OIB A;  2E80 A;  4L38 A;  4L1F A;  2CJ8 A;  3TZ0 A;  2D29 A;  1X8Z A;  2VF1 A;  2BTZ A;  1Y8N A;  1X90 A;  1LVC A;  5B5V A;  5BRM A;  2C12 A;  3FCJ A;  4KCF A;  3SF6 A;  2AO2 A;  3MPI A;  4V25 A;  1UDY A;  2JBT A;  4FZ4 A;  5BRK A;  2ZDY A;  3AFF A;  4JIO A;  1GKZ A;  2CJ5 A;  2PG0 A;  2CJ7 A;  2OEV A;  2DDH A;  1BUC A;  2OEX A;  2FON A;  1SIR A;  1GU6 A;  2LFW A;  2Q8I A;  2R0M A;  4F0X A;  2EC5 A;  5EZ3 A;  2EBF X;  2XS1 A;  3EON A;  4O5M A;  3M9V A;  1UKW A;  1PK0 A;  3FO3 A;  5M4P A;  4JEK A;  4X28 C;  1EGD A;  4IRN A;  3AFE A;  1XFZ A;  1X91 A;  2GBB A;  3D2R A;  4J1V A;  3TZ4 A;  4E01 A;  1IVH A;  2IX5 A;  5GJV E;  4OO2 A;  5M4N A;  3Q24 A;  3PFD A;  3D9E A;  3VAD A;  2YYI A;  4N5F A;  3LG1 A;  3UU9 A;  3X0X A;  3L1T A;  3X0Y A;  4Q1O A;  2RDZ A;  4W9U A;  3MDE A;  1RX0 A;  2EBA A;  1FS9 A;  1XFX A;  2FP1 A;  3MPJ A;  3UBR A;  4IV6 A;  1EGC A;  3EOM A;  3SWO A;  2R05 A;  3OWM A;  4L3Z A;  4MPC A;  4Q5B A;  2YGW A;  1XFU A;  1JQI A;  4L3X A;  1W07 A;  1K93 A;  2BU6 A;  4H7Q A;  2BU8 A;  2JIF A;  4P13 A;  2OT4 A;  3RKH A;  5J6A A;  3TOR A;  5B5W A;  1GJV A;  1RJ1 A;  2R0N A;  5M4K A;  5GJW E;  2Q8H A;  2E81 A;  2VR0 A;  3HWC A;  2REH A;  2XS8 A;  1SK6 A;  4Q5C A;  4E02 A;  1XFW A;  4E00 A;  3BNJ A;  3D1I A;  3LGQ A;  4P79 A;  2CJ4 A;  1U8V A;  1RP3 A;  4X28 A;  5M4M A;  3D9D A;  4HR3 A;  4DOY A;  3B96 A;  3R7K A;  3TZ5 A;  2QR4 A;  4HKR A;  4MPE A;  1FS8 A;  4AKI A;  1Y8P A;  2YYK A;  2BU2 A;  3Q23 A;  2J7A A;  1T9G A;  1EGE A;  3GNC A;  3MKH A;  3SXQ A;  2VIG A;  1Y8O A;  3OWA A;  2OJQ A;  1QDB A;  4FF1 A;  4KSA A;  5B6B A;  4Q4U A;  2F6L A;  4M9A A;  2C0U A;  2Q8G A;  4ZXV A;  1XG2 B;  1XFV A;  2YYG A;  3CRL A;  5K3G A;  4LQQ B;  4QIC A;  3D9G A;  1PI1 A;  4AKH A;  2A1T A;  2BU7 A;  3P4T A;  4H85 A;  2CX9 A;  1FS7 A;  2OR0 A;  1JM6 A;  3BNH A;  4DZY A;  3CE2 A;  3S7W A;  4G5E A;  2R02 A;  2YYL A;  2FP2 A;  3MXL A;  2ZAF A;  2RF7 A;  1RJ4 A;  5K3H A;  3MDD A;  1S26 A;  2ZKJ A;  4HKS A;  4AKG A;  1OAH A;  4KTO A;  2PNR A;  3X29 A;  1GKX A;  1SC5 A;  4H81 A;  2DVL A;  4G97 A;  1R3B A;  4AI6 A;  3DJL A;  2JBR A;  1R2J A;  4MP2 A;  2PO4 A;  2XQR B;  2BU5 A;  3C3L A;  5K3I A;  3GM6 A;  2AZE A;  2YYJ A;  3C46 A;  3NF4 A;  3BNF A;  3KML A;  4NXL A;  4JIZ A;  2ZDX A; 
#chains in the Genus database with same CATH homology
 3D6B A;  3D9F A;  4L3Y A;  4XVX A;  4Q0T A;  3II9 A;  4ZYJ A;  4Q17 A;  2IX6 A;  3BNG A;  1WS9 A;  3MMO A;  3TTB A;  2RFQ A;  2YYM A;  4RM7 A;  2UXW A;  2WBI A;  4U83 A;  2ZO5 A;  3F29 A;  5K3J A;  3GQT A;  2Z1Q A;  4WJY A;  3SCE A;  1SIQ A;  1IS2 A;  2JBS A;  3OIB A;  2E80 A;  4L38 A;  4L1F A;  2D29 A;  2C12 A;  3FCJ A;  4KCF A;  3SF6 A;  3MPI A;  1UDY A;  2JBT A;  3AFF A;  2PG0 A;  2DDH A;  1BUC A;  2FON A;  1SIR A;  1GU6 A;  2R0M A;  3EON A;  4O5M A;  3M9V A;  1UKW A;  3FO3 A;  4JEK A;  4X28 C;  1EGD A;  4IRN A;  3AFE A;  1IVH A;  2IX5 A;  4OO2 A;  3PFD A;  3D9E A;  2YYI A;  4N5F A;  3LG1 A;  3UU9 A;  3X0X A;  3L1T A;  3X0Y A;  4Q1O A;  2RDZ A;  4W9U A;  3MDE A;  1RX0 A;  2EBA A;  1FS9 A;  3UBR A;  3MPJ A;  4IV6 A;  1EGC A;  3EOM A;  3SWO A;  3OWM A;  4L3Z A;  4Q5B A;  4L3X A;  1JQI A;  1W07 A;  2JIF A;  4P13 A;  2OT4 A;  3RKH A;  3TOR A;  2R0N A;  2E81 A;  2VR0 A;  3HWC A;  2REH A;  4Q5C A;  3BNJ A;  3D1I A;  3LGQ A;  1U8V A;  4X28 A;  3D9D A;  4HR3 A;  4DOY A;  3B96 A;  3R7K A;  1FS8 A;  2YYK A;  2J7A A;  1T9G A;  1EGE A;  3GNC A;  3MKH A;  3SXQ A;  2VIG A;  3OWA A;  1QDB A;  4Q4U A;  4M9A A;  2C0U A;  4ZXV A;  2YYG A;  5K3G A;  3D9G A;  2A1T A;  3P4T A;  2CX9 A;  1FS7 A;  2OR0 A;  3BNH A;  3S7W A;  4G5E A;  2YYL A;  3MXL A;  2ZAF A;  2RF7 A;  5K3H A;  3MDD A;  1OAH A;  4KTO A;  2DVL A;  2JBR A;  1R2J A;  5K3I A;  3GM6 A;  2YYJ A;  3NF4 A;  3BNF A;  4NXL A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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