3MPJA

Structure of the glutaryl-coenzyme a dehydrogenase
Total Genus 151
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
151
sequence length
389
structure length
389
Chain Sequence
MDFNLSKELQMLQKEVRNFVNKKIVPFADQWDNENHFPYEEAVRPMGELGFFGTVIPEEYGGEGMDQGWLAAMIVTEEIARGSSALRVQLNMEVLGCAYTILTYGSEALKKKYVPKLSSAEFLGGFGITEPDAGSDVMAMSSTAEDKGDHWLLNGSKTWISNAAQADVLIYYAYTDKAAGSRGLSAFVIEPRNFPGIKTSNLEKLGSHASPTGELFLDNVKVPKENILGKPGDGARIVFGSLNHTRLSAAAGGVGLAQACLDAAIKYCNERRQFGKPIGDFQMNQDMIAQMAVEVEAARLLAYKAAAAKDEGRLNNGLDVAMAKYAAGEAVSKCANYAMRILGAYGYSTEYPVARFYRDAPTYYMVEGSANICKMIIALDQLGVRKANR
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Glutaryl-CoA dehydrogenase
publication title Structural basis for promoting and preventing decarboxylation in glutaryl-coenzyme a dehydrogenases.
pubmed doi rcsb
source organism Desulfococcus multivorans
molecule tags Oxidoreductase
total genus 151
structure length 389
sequence length 389
chains with identical sequence B, D, E, F, G
ec nomenclature ec 1.3.99.32: Glutaryl-CoA dehydrogenase (acceptor).
pdb deposition date 2010-04-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00441 Acyl-CoA_dh_1 Acyl-CoA dehydrogenase, C-terminal domain
A PF02770 Acyl-CoA_dh_M Acyl-CoA dehydrogenase, middle domain
A PF02771 Acyl-CoA_dh_N Acyl-CoA dehydrogenase, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.540.10 Mainly Alpha Orthogonal Bundle Butyryl-Coa Dehydrogenase, subunit A; domain 1 Acyl-CoA dehydrogenase/oxidase, N-terminal domain 3mpjA01
1.20.140.10 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A; domain 3 Butyryl-CoA Dehydrogenase, subunit A, domain 3 3mpjA03
2.40.110.10 Mainly Beta Beta Barrel Butyryl-CoA Dehydrogenase, subunit A; domain 2 Butyryl-CoA Dehydrogenase, subunit A, domain 2 3mpjA02
2D29A 2CX9A 2IX6A 3D9EA 1WS9A 3SWOA 4RM7A 2IX5A 2Z1QA 3FCJA 4X28C 2R0NA 2JBRA 3D9GA 1EGEA 3M9VA 3L1TA 3AFEA 2PG0A 3B96A 2JIFA 5K3HA 3EONA 2A1TA 4Q0TA 4JEKA 2JBSA 1FS7A 3D1IA 5K3JA 3RKHA 4L3XA 3UBRA 4L1FA 2J7AA 3D9DA 4WJYA 4G5EA 2YYJA 1U8VA 3OWAA 4IRNA 3X0XA 3OIBA 3MDEA 4X28A 4Q1OA 3MPIA 1JQIA 4XVXA 3S7WA 2JBTA 3TTBA 2YYLA 1UKWA 2VIGA 3EOMA 3MXLA 4U83A 3BNHA 3D6BA 4IV6A 4N5FA 1EGCA 3TORA 5K3IA 4L3YA 4W9UA 1QDBA 5K3GA 3LG1A 4ZXVA 2YYGA 4Q17A 1FS9A 3II9A 3MPJA 1IVHA 3LGQA 3OWMA 2REHA 2RF7A 1BUCA 4KTOA 4KCFA 1R2JA 3FO3A 3HWCA 1W07A 2UXWA 2VR0A 3BNGA 3MKHA 4L38A 2YYMA 2R0MA 3D9FA 2OR0A 2E81A 2DDHA 3P4TA 2EBAA 3SXQA 4Q4UA 2DVLA 3AFFA 3PFDA 4L3ZA 1GU6A 3BNFA 2FONA 2ZAFA 2C12A 3GNCA 1SIRA 2RDZA 3GQTA 4M9AA 1RX0A 2WBIA 1UDYA 3F29A 2RFQA 3NF4A 4NXLA 4O5MA 3X0YA 4DOYA 3GM6A 4P13A 1T9GA 3R7KA 4OO2A 3MDDA 1EGDA 3SF6A 3BNJA 4Q5CA 4HR3A 1OAHA 2YYIA 1FS8A 3UU9A 2E80A 2OT4A 2C0UA 4ZYJA 2ZO5A 3MMOA 2YYKA 1IS2A 4Q5BA 1SIQA 3SCEA
chains in the Genus database with same CATH superfamily
5B6BA 2D29A 3D2RA 2Q8FA 4E01A 4AKIA 2HJNA 2VF1A 2R03A 5GJWE 4AKGA 3N0RA 5BRKA 2CX9A 2IX6A 3D9EA 1WS9A 3SWOA 4MP7A 4FF4A 4RM7A 2IX5A 2Z1QA 1Y8PA 3FCJA 2BU8A 5EZ3A 2OEXA 2ZDYA 4X28C 2R0NA 2JBRA 2CJ5A 3D9GA 1EGEA 3M9VA 3L1TA 3AFEA 2PG0A 3B96A 5B5WA 2JIFA 5K3HA 3CRKA 3EONA 4KS9A 4AKHA 2A1TA 2ZDXA 4Q0TA 4JEKA 4F0XA 1K90A 2JBSA 1FS7A 3TZ2A 3D1IA 4AI6A 1GKXA 5K3JA 3RKHA 4L3XA 5BRMA 3UBRA 4L1FA 2J7AA 3D9DA 3Q22A 4WJYA 4G5EA 2YYJA 1U8VA 2BU5A 3OWAA 4IRNA 3X0XA 4FZ4A 3OIBA 2CJ6A 2F6LA 1XFXA 3MDEA 4X28A 4V25A 1X90A 4G97A 2PO4A 2BU2A 4KSFA 2Q8GA 4Q1OA 4DZYA 3MPIA 1JQIA 4JIZA 4XVXA 1PK0A 3S7WA 2JBTA 3TTBA 5J6AA 2CJ4A 2YYLA 1UKWA 2VIGA 3EOMA 3MXLA 1K93A 1S26A 1XFVA 4U83A 3BNHA 3VADA 3D6BA 4E02A 4IV6A 4J1VA 1X91A 1XG2B 4MPEA 2AO2A 4N5FA 4HKSA 3C46A 2AZEA 1EGCA 2EBFX 3TORA 4MPNA 5K3IA 3C3LA 4L3YA 4W9UA 1GKZA 2EC5A 2OJQA 1QDBA 5K3GA 2R05A 3LG1A 4H85A 4ZXVA 2YYGA 5M4MA 2Q8IA 1X8ZA 1Y8NA 1FS9A 2CJ7A 1PI1A 4Q17A 3II9A 3MPJA 1IVHA 5GJVE 2LFWA 3LGQA 3Q24A 4H7QA 3OWMA 2REHA 2PNRA 2RF7A 2FP2A 1BUCA 4LQQB 5B5VA 4KTOA 4KCFA 1R2JA 3FO3A 3HWCA 1W07A 2UXWA 3TZ0A 1RP3A 3CRLA 2VR0A 3BNGA 4FF1A 1SK6A 3MKHA 4L38A 2YYMA 1R3BA 4HKRA 2R0MA 3D9FA 2OR0A 2E81A 3Q0AA 2DDHA 3P4TA 1RJ1A 4FF3A 2EBAA 4MPCA 2GBBA 1SC5A 3TZ5A 2QR4A 1XFWA 4LQSB 3SXQA 4Q4UA 2DVLA 2ZKJA 3AFFA 2CJ8A 3PFDA 3KMLA 4L3ZA 1GU6A 3BNFA 3CE2A 5M4NA 2FONA 2ZAFA 2C12A 3GNCA 5J71A 1SIRA 3DJLA 2XS8A 2Q8HA 2OEVA 2RDZA 3GQTA 1LVCA 4M9AA 5M4PA 4JIOA 1RX0A 2WBIA 2FP1A 1UDYA 3C2PA 4KSAA 4E00A 3F29A 1XFUA 2RFQA 3U33A 3NF4A 4NXLA 4O5MA 3X0YA 4DOYA 1K8TA 2BTZA 3GM6A 1Y8OA 4P79A 4P13A 1T9GA 5M4KA 3X29A 3R7KA 1XFYA 4OO2A 3MDDA 1Y0VA 1EGDA 3SF6A 3BNJA 4MP2A 4H81A 4Q5CA 4HR3A 1OAHA 2YYIA 1FS8A 4QICA 2E80A 2E0AA 2XS1A 2YGWA 2OT4A 3UU9A 4FF2A 2XQRB 2C0UA 2BU6A 1XFZA 4ZYJA 2ZO5A 3MMOA 1RJ4A 2R02A 1JM6A 1IS2A 2YYKA 4V26A 3VKGA 4Q5BA 2EBHX 3TZ4A 3VKHA 1GJVA 3Q23A 1SIQA 2BU7A 3SCEA
chains in the Genus database with same CATH topology
2D29A 2CX9A 2IX6A 3D9EA 1WS9A 3SWOA 4RM7A 2IX5A 2Z1QA 3FCJA 4X28C 2R0NA 2JBRA 3D9GA 1EGEA 3M9VA 3L1TA 3AFEA 2PG0A 3B96A 2JIFA 5K3HA 3EONA 2A1TA 4Q0TA 4JEKA 2JBSA 1FS7A 3D1IA 5K3JA 3RKHA 4L3XA 3UBRA 4L1FA 2J7AA 3D9DA 4WJYA 4G5EA 2YYJA 1U8VA 3OWAA 4IRNA 3X0XA 3OIBA 3MDEA 4X28A 4Q1OA 3MPIA 1JQIA 4XVXA 3S7WA 2JBTA 3TTBA 2YYLA 1UKWA 2VIGA 3EOMA 3MXLA 4U83A 3BNHA 3D6BA 4IV6A 4N5FA 1EGCA 3TORA 5K3IA 4L3YA 4W9UA 1QDBA 5K3GA 3LG1A 4ZXVA 2YYGA 4Q17A 1FS9A 3II9A 3MPJA 1IVHA 3LGQA 3OWMA 2REHA 2RF7A 1BUCA 4KTOA 4KCFA 1R2JA 3FO3A 3HWCA 1W07A 2UXWA 2VR0A 3BNGA 3MKHA 4L38A 2YYMA 2R0MA 3D9FA 2OR0A 2E81A 2DDHA 3P4TA 2EBAA 3SXQA 4Q4UA 2DVLA 3AFFA 3PFDA 4L3ZA 1GU6A 3BNFA 2FONA 2ZAFA 2C12A 3GNCA 1SIRA 2RDZA 3GQTA 4M9AA 1RX0A 2WBIA 1UDYA 3F29A 2RFQA 3NF4A 4NXLA 4O5MA 3X0YA 4DOYA 3GM6A 4P13A 1T9GA 3R7KA 4OO2A 3MDDA 1EGDA 3SF6A 3BNJA 4Q5CA 4HR3A 1OAHA 2YYIA 1FS8A 3UU9A 2E80A 2OT4A 2C0UA 4ZYJA 2ZO5A 3MMOA 2YYKA 1IS2A 4Q5BA 1SIQA 3SCEA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2D29 A;  2CX9 A;  2IX6 A;  3D9E A;  1WS9 A;  3SWO A;  4RM7 A;  2IX5 A;  2Z1Q A;  3FCJ A;  4X28 C;  2R0N A;  2JBR A;  3D9G A;  1EGE A;  3M9V A;  3L1T A;  3AFE A;  2PG0 A;  3B96 A;  2JIF A;  5K3H A;  3EON A;  2A1T A;  4Q0T A;  4JEK A;  2JBS A;  1FS7 A;  3D1I A;  5K3J A;  3RKH A;  4L3X A;  3UBR A;  4L1F A;  2J7A A;  3D9D A;  4WJY A;  4G5E A;  2YYJ A;  1U8V A;  3OWA A;  4IRN A;  3X0X A;  3OIB A;  3MDE A;  4X28 A;  4Q1O A;  3MPI A;  1JQI A;  4XVX A;  3S7W A;  2JBT A;  3TTB A;  2YYL A;  1UKW A;  2VIG A;  3EOM A;  3MXL A;  4U83 A;  3BNH A;  3D6B A;  4IV6 A;  4N5F A;  1EGC A;  3TOR A;  5K3I A;  4L3Y A;  4W9U A;  1QDB A;  5K3G A;  3LG1 A;  4ZXV A;  2YYG A;  4Q17 A;  1FS9 A;  3II9 A;  3MPJ A;  1IVH A;  3LGQ A;  3OWM A;  2REH A;  2RF7 A;  1BUC A;  4KTO A;  4KCF A;  1R2J A;  3FO3 A;  3HWC A;  1W07 A;  2UXW A;  2VR0 A;  3BNG A;  3MKH A;  4L38 A;  2YYM A;  2R0M A;  3D9F A;  2OR0 A;  2E81 A;  2DDH A;  3P4T A;  2EBA A;  3SXQ A;  4Q4U A;  2DVL A;  3AFF A;  3PFD A;  4L3Z A;  1GU6 A;  3BNF A;  2FON A;  2ZAF A;  2C12 A;  3GNC A;  1SIR A;  2RDZ A;  3GQT A;  4M9A A;  1RX0 A;  2WBI A;  1UDY A;  3F29 A;  2RFQ A;  3NF4 A;  4NXL A;  4O5M A;  3X0Y A;  4DOY A;  3GM6 A;  4P13 A;  1T9G A;  3R7K A;  4OO2 A;  3MDD A;  1EGD A;  3SF6 A;  3BNJ A;  4Q5C A;  4HR3 A;  1OAH A;  2YYI A;  1FS8 A;  3UU9 A;  2E80 A;  2OT4 A;  2C0U A;  4ZYJ A;  2ZO5 A;  3MMO A;  2YYK A;  1IS2 A;  4Q5B A;  1SIQ A;  3SCE A; 
#chains in the Genus database with same CATH topology
 5B6B A;  2D29 A;  3D2R A;  2Q8F A;  4E01 A;  4AKI A;  2HJN A;  2VF1 A;  2R03 A;  5GJW E;  4AKG A;  3N0R A;  5BRK A;  2CX9 A;  2IX6 A;  3D9E A;  1WS9 A;  3SWO A;  4MP7 A;  4FF4 A;  4RM7 A;  2IX5 A;  2Z1Q A;  1Y8P A;  3FCJ A;  2BU8 A;  5EZ3 A;  2OEX A;  2ZDY A;  4X28 C;  2R0N A;  2JBR A;  2CJ5 A;  3D9G A;  1EGE A;  3M9V A;  3L1T A;  3AFE A;  2PG0 A;  3B96 A;  5B5W A;  2JIF A;  5K3H A;  3CRK A;  3EON A;  4KS9 A;  4AKH A;  2A1T A;  2ZDX A;  4Q0T A;  4JEK A;  4F0X A;  1K90 A;  2JBS A;  1FS7 A;  3TZ2 A;  3D1I A;  4AI6 A;  1GKX A;  5K3J A;  3RKH A;  4L3X A;  5BRM A;  3UBR A;  4L1F A;  2J7A A;  3D9D A;  3Q22 A;  4WJY A;  4G5E A;  2YYJ A;  1U8V A;  2BU5 A;  3OWA A;  4IRN A;  3X0X A;  4FZ4 A;  3OIB A;  2CJ6 A;  2F6L A;  1XFX A;  3MDE A;  4X28 A;  4V25 A;  1X90 A;  4G97 A;  2PO4 A;  2BU2 A;  4KSF A;  2Q8G A;  4Q1O A;  4DZY A;  3MPI A;  1JQI A;  4JIZ A;  4XVX A;  1PK0 A;  3S7W A;  2JBT A;  3TTB A;  5J6A A;  2CJ4 A;  2YYL A;  1UKW A;  2VIG A;  3EOM A;  3MXL A;  1K93 A;  1S26 A;  1XFV A;  4U83 A;  3BNH A;  3VAD A;  3D6B A;  4E02 A;  4IV6 A;  4J1V A;  1X91 A;  1XG2 B;  4MPE A;  2AO2 A;  4N5F A;  4HKS A;  3C46 A;  2AZE A;  1EGC A;  2EBF X;  3TOR A;  4MPN A;  5K3I A;  3C3L A;  4L3Y A;  4W9U A;  1GKZ A;  2EC5 A;  2OJQ A;  1QDB A;  5K3G A;  2R05 A;  3LG1 A;  4H85 A;  4ZXV A;  2YYG A;  5M4M A;  2Q8I A;  1X8Z A;  1Y8N A;  1FS9 A;  2CJ7 A;  1PI1 A;  4Q17 A;  3II9 A;  3MPJ A;  1IVH A;  5GJV E;  2LFW A;  3LGQ A;  3Q24 A;  4H7Q A;  3OWM A;  2REH A;  2PNR A;  2RF7 A;  2FP2 A;  1BUC A;  4LQQ B;  5B5V A;  4KTO A;  4KCF A;  1R2J A;  3FO3 A;  3HWC A;  1W07 A;  2UXW A;  3TZ0 A;  1RP3 A;  3CRL A;  2VR0 A;  3BNG A;  4FF1 A;  1SK6 A;  3MKH A;  4L38 A;  2YYM A;  1R3B A;  4HKR A;  2R0M A;  3D9F A;  2OR0 A;  2E81 A;  3Q0A A;  2DDH A;  3P4T A;  1RJ1 A;  4FF3 A;  2EBA A;  4MPC A;  2GBB A;  1SC5 A;  3TZ5 A;  2QR4 A;  1XFW A;  4LQS B;  3SXQ A;  4Q4U A;  2DVL A;  2ZKJ A;  3AFF A;  2CJ8 A;  3PFD A;  3KML A;  4L3Z A;  1GU6 A;  3BNF A;  3CE2 A;  5M4N A;  2FON A;  2ZAF A;  2C12 A;  3GNC A;  5J71 A;  1SIR A;  3DJL A;  2XS8 A;  2Q8H A;  2OEV A;  2RDZ A;  3GQT A;  1LVC A;  4M9A A;  5M4P A;  4JIO A;  1RX0 A;  2WBI A;  2FP1 A;  1UDY A;  3C2P A;  4KSA A;  4E00 A;  3F29 A;  1XFU A;  2RFQ A;  3U33 A;  3NF4 A;  4NXL A;  4O5M A;  3X0Y A;  4DOY A;  1K8T A;  2BTZ A;  3GM6 A;  1Y8O A;  4P79 A;  4P13 A;  1T9G A;  5M4K A;  3X29 A;  3R7K A;  1XFY A;  4OO2 A;  3MDD A;  1Y0V A;  1EGD A;  3SF6 A;  3BNJ A;  4MP2 A;  4H81 A;  4Q5C A;  4HR3 A;  1OAH A;  2YYI A;  1FS8 A;  4QIC A;  2E80 A;  2E0A A;  2XS1 A;  2YGW A;  2OT4 A;  3UU9 A;  4FF2 A;  2XQR B;  2C0U A;  2BU6 A;  1XFZ A;  4ZYJ A;  2ZO5 A;  3MMO A;  1RJ4 A;  2R02 A;  1JM6 A;  1IS2 A;  2YYK A;  4V26 A;  3VKG A;  4Q5B A;  2EBH X;  3TZ4 A;  3VKH A;  1GJV A;  3Q23 A;  1SIQ A;  2BU7 A;  3SCE A; 
#chains in the Genus database with same CATH homology
 2D29 A;  2CX9 A;  2IX6 A;  3D9E A;  1WS9 A;  3SWO A;  4RM7 A;  2IX5 A;  2Z1Q A;  3FCJ A;  4X28 C;  2R0N A;  2JBR A;  3D9G A;  1EGE A;  3M9V A;  3L1T A;  3AFE A;  2PG0 A;  3B96 A;  2JIF A;  5K3H A;  3EON A;  2A1T A;  4Q0T A;  4JEK A;  2JBS A;  1FS7 A;  3D1I A;  5K3J A;  3RKH A;  4L3X A;  3UBR A;  4L1F A;  2J7A A;  3D9D A;  4WJY A;  4G5E A;  2YYJ A;  1U8V A;  3OWA A;  4IRN A;  3X0X A;  3OIB A;  3MDE A;  4X28 A;  4Q1O A;  3MPI A;  1JQI A;  4XVX A;  3S7W A;  2JBT A;  3TTB A;  2YYL A;  1UKW A;  2VIG A;  3EOM A;  3MXL A;  4U83 A;  3BNH A;  3D6B A;  4IV6 A;  4N5F A;  1EGC A;  3TOR A;  5K3I A;  4L3Y A;  4W9U A;  1QDB A;  5K3G A;  3LG1 A;  4ZXV A;  2YYG A;  4Q17 A;  1FS9 A;  3II9 A;  3MPJ A;  1IVH A;  3LGQ A;  3OWM A;  2REH A;  2RF7 A;  1BUC A;  4KTO A;  4KCF A;  1R2J A;  3FO3 A;  3HWC A;  1W07 A;  2UXW A;  2VR0 A;  3BNG A;  3MKH A;  4L38 A;  2YYM A;  2R0M A;  3D9F A;  2OR0 A;  2E81 A;  2DDH A;  3P4T A;  2EBA A;  3SXQ A;  4Q4U A;  2DVL A;  3AFF A;  3PFD A;  4L3Z A;  1GU6 A;  3BNF A;  2FON A;  2ZAF A;  2C12 A;  3GNC A;  1SIR A;  2RDZ A;  3GQT A;  4M9A A;  1RX0 A;  2WBI A;  1UDY A;  3F29 A;  2RFQ A;  3NF4 A;  4NXL A;  4O5M A;  3X0Y A;  4DOY A;  3GM6 A;  4P13 A;  1T9G A;  3R7K A;  4OO2 A;  3MDD A;  1EGD A;  3SF6 A;  3BNJ A;  4Q5C A;  4HR3 A;  1OAH A;  2YYI A;  1FS8 A;  3UU9 A;  2E80 A;  2OT4 A;  2C0U A;  4ZYJ A;  2ZO5 A;  3MMO A;  2YYK A;  1IS2 A;  4Q5B A;  1SIQ A;  3SCE A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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