2CX9A

Crystal structure of acyl-coa dehydrogenase
Total Genus 149
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
149
sequence length
385
structure length
385
Chain Sequence
LWFEEGAEERQVLGPFREFLKAEVAPGAAERDRTGAFPWDLVRKLAEFGVFGALVPEAYGGAGLSTRLFARMVEAIAYYDGALALTVASHNSLATGHILLAGSEAQKEAFLPKLASGEALGAWGLTEPGSGSDAAALKTKAEKVEGGWRLNGTKQFITQGSVAGVYVVMARTDPPPSPERKHQGISAFAFFRPERGLKVGRKEEKLGLTASDTAQLILEDLFVPEEALLGERGKGFYDVLRVLDGGRIGIAAMAVGLGQAALDYALAYAKGREAFGRPIAEFEGVSFKLAEAATELEAARLLYLKAAELKDAGRPFTLEAAQAKLFASEAAVKACDEAIQILGGYGYVKDYPVERYWRDARLTRIGEGTSEILKLVIARRLLEAV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords acyl-CoA dehydrogenase
publication title Crystal structure of acyl-CoA dehydrogenase
rcsb
source organism Thermus thermophilus
total genus 149
structure length 385
sequence length 385
chains with identical sequence B, C, D
ec nomenclature ec 1.3.99.3: Transferred entry: 1.3.8.7, 1.3.8.8 and 1.3.8.9.
pdb deposition date 2005-06-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00441 Acyl-CoA_dh_1 Acyl-CoA dehydrogenase, C-terminal domain
A PF02770 Acyl-CoA_dh_M Acyl-CoA dehydrogenase, middle domain
A PF02771 Acyl-CoA_dh_N Acyl-CoA dehydrogenase, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.540.10 Mainly Alpha Orthogonal Bundle Butyryl-Coa Dehydrogenase, subunit A; domain 1 Acyl-CoA dehydrogenase/oxidase, N-terminal domain 2cx9A01
1.20.140.10 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A; domain 3 Butyryl-CoA Dehydrogenase, subunit A, domain 3 2cx9A03
2.40.110.10 Mainly Beta Beta Barrel Butyryl-CoA Dehydrogenase, subunit A; domain 2 Butyryl-CoA Dehydrogenase, subunit A, domain 2 2cx9A02
2RFQA 2OR0A 4Q1OA 1IS2A 2JBTA 2ZAFA 4JEKA 2YYKA 1FS9A 2C0UA 3D9EA 2A1TA 4OO2A 3EONA 1R2JA 3RKHA 2JIFA 3GNCA 3HWCA 2ZO5A 2YYJA 3D9FA 1T9GA 3GQTA 2YYGA 3M9VA 3II9A 3SF6A 3X0XA 3AFFA 4M9AA 3D1IA 3OWMA 5K3GA 4Q0TA 2OT4A 3LGQA 2YYIA 3UU9A 3BNHA 3SXQA 2DVLA 3FO3A 4O5MA 4ZYJA 1W07A 3X0YA 3SWOA 1FS8A 3MDEA 1BUCA 3MXLA 2UXWA 4HR3A 5K3HA 3UBRA 4G5EA 4ZXVA 3BNJA 3TTBA 4IRNA 4X28C 2J7AA 4L3ZA 3D9DA 3MPIA 1OAHA 1FS7A 3F29A 2IX5A 4IV6A 2VIGA 2E80A 4Q5CA 4RM7A 3NF4A 3D6BA 2E81A 2REHA 3TORA 3BNGA 4KTOA 2IX6A 2JBRA 2EBAA 4WJYA 4L3XA 2DDHA 3MPJA 2RDZA 3EOMA 1IVHA 3S7WA 3FCJA 4DOYA 3D9GA 3BNFA 5K3IA 3P4TA 4U83A 1WS9A 2RF7A 2JBSA 2D29A 4N5FA 3GM6A 4L38A 3AFEA 1JQIA 2VR0A 3SCEA 2CX9A 1SIQA 1GU6A 2C12A 4L1FA 4XVXA 3MDDA 4L3YA 1QDBA 2R0MA 3LG1A 3MMOA 1EGDA 3OWAA 3L1TA 3PFDA 2R0NA 2PG0A 5K3JA 2Z1QA 1RX0A 4P13A 4Q4UA 4Q5BA 4Q17A 1UKWA 4KCFA 1UDYA 1U8VA 3MKHA 2YYMA 3B96A 2WBIA 3R7KA 1EGCA 4NXLA 4W9UA 2FONA 4X28A 2YYLA 1SIRA 1EGEA 3OIBA
chains in the Genus database with same CATH superfamily
2OEXA 4G97A 2RFQA 2OR0A 4Q1OA 4E01A 1IS2A 2BTZA 2JBTA 1XFVA 4H85A 2ZAFA 4JEKA 4MPCA 2YYKA 3C3LA 1FS9A 2C0UA 3D9EA 1R3BA 1RJ4A 2R05A 2A1TA 4OO2A 1XG2B 3VKHA 3EONA 1R2JA 1JM6A 3RKHA 1RJ1A 2JIFA 1Y8PA 4FF3A 2BU5A 3GNCA 3HWCA 3X29A 1XFUA 2ZO5A 2OEVA 3U33A 2CJ5A 2YYJA 3D9FA 2EBFX 4MP2A 1T9GA 1X91A 1XFWA 5BRMA 4V26A 3GQTA 2YYGA 5EZ3A 3M9VA 5J71A 3II9A 1PK0A 4H7QA 3SF6A 4JIOA 5J6AA 1LVCA 2XQRB 3X0XA 3VKGA 3AFFA 1K90A 4M9AA 3D1IA 3OWMA 5K3GA 4Q0TA 4V25A 4DZYA 2LFWA 3LGQA 2OT4A 2YYIA 2Q8IA 4JIZA 3BNHA 3N0RA 2DVLA 3SXQA 3UU9A 2AO2A 4O5MA 3FO3A 4ZYJA 1Y8OA 2YYLA 1W07A 2CJ4A 3X0YA 2XS1A 2CJ6A 4P79A 5GJVE 5B5VA 3Q22A 2PNRA 3SWOA 2OJQA 2VF1A 1FS8A 4HKRA 3Q23A 4QICA 3MDEA 1BUCA 3MXLA 5GJWE 2UXWA 4HR3A 5K3HA 3UBRA 4G5EA 4ZXVA 3BNJA 3TTBA 5M4NA 3C2PA 4FF4A 4IRNA 4X28C 2J7AA 4L3ZA 3D9DA 3MPIA 4KS9A 4MPEA 1OAHA 1FS7A 3F29A 2IX5A 4IV6A 1Y8NA 4F0XA 1X90A 3TZ0A 4H81A 2VIGA 4MPNA 4AKIA 2GBBA 4AKHA 2E80A 1XFXA 4Q5CA 4RM7A 3NF4A 3D6BA 1SC5A 2E81A 1Y0VA 3D2RA 4LQQB 2REHA 2Q8HA 1K93A 1GJVA 2PO4A 3TORA 3TZ5A 3BNGA 4KTOA 2IX6A 1PI1A 2JBRA 2EBAA 2YGWA 4MP7A 4LQSB 4WJYA 4L3XA 2DDHA 3MPJA 2RDZA 3EOMA 1IVHA 3S7WA 3FCJA 4DOYA 3D9GA 2EBHX 4J1VA 2CJ7A 4FF1A 3CRLA 3CRKA 3BNFA 5K3IA 4KSAA 4FF2A 4AI6A 3P4TA 3VADA 2R03A 4U83A 1WS9A 2QR4A 2RF7A 3KMLA 1GKXA 2JBSA 2D29A 4N5FA 3GM6A 4L38A 4AKGA 2BU8A 2BU2A 3C46A 3AFEA 2ZDXA 2AZEA 1JQIA 1SK6A 2BU6A 3CE2A 2VR0A 2XS8A 3TZ2A 3SCEA 1XFZA 5M4KA 3DJLA 2CX9A 1SIQA 1GU6A 2HJNA 3Q0AA 2C12A 4L1FA 4XVXA 3MDDA 4HKSA 4L3YA 1QDBA 3Q24A 2R0MA 1S26A 3LG1A 3MMOA 2Q8GA 1EGDA 3OWAA 1XFYA 5B5WA 1RP3A 3L1TA 3PFDA 2R0NA 2PG0A 5K3JA 2Z1QA 2CJ8A 2R02A 3TZ4A 1RX0A 4P13A 4Q4UA 4Q5BA 4Q17A 1UKWA 4KCFA 1UDYA 1U8VA 1X8ZA 2Q8FA 3MKHA 2ZDYA 4E02A 5B6BA 2YYMA 2EC5A 5BRKA 2E0AA 3B96A 2WBIA 3R7KA 5M4MA 1EGCA 4NXLA 4FZ4A 4W9UA 1GKZA 2FONA 5M4PA 4KSFA 2F6LA 2ZKJA 1K8TA 4X28A 4E00A 2BU7A 2FP1A 2FP2A 1SIRA 1EGEA 3OIBA
chains in the Genus database with same CATH topology
2RFQA 2OR0A 4Q1OA 1IS2A 2JBTA 2ZAFA 4JEKA 2YYKA 1FS9A 2C0UA 3D9EA 2A1TA 4OO2A 3EONA 1R2JA 3RKHA 2JIFA 3GNCA 3HWCA 2ZO5A 2YYJA 3D9FA 1T9GA 3GQTA 2YYGA 3M9VA 3II9A 3SF6A 3X0XA 3AFFA 4M9AA 3D1IA 3OWMA 5K3GA 4Q0TA 2OT4A 3LGQA 2YYIA 3UU9A 3BNHA 3SXQA 2DVLA 3FO3A 4O5MA 4ZYJA 1W07A 3X0YA 3SWOA 1FS8A 3MDEA 1BUCA 3MXLA 2UXWA 4HR3A 5K3HA 3UBRA 4G5EA 4ZXVA 3BNJA 3TTBA 4IRNA 4X28C 2J7AA 4L3ZA 3D9DA 3MPIA 1OAHA 1FS7A 3F29A 2IX5A 4IV6A 2VIGA 2E80A 4Q5CA 4RM7A 3NF4A 3D6BA 2E81A 2REHA 3TORA 3BNGA 4KTOA 2IX6A 2JBRA 2EBAA 4WJYA 4L3XA 2DDHA 3MPJA 2RDZA 3EOMA 1IVHA 3S7WA 3FCJA 4DOYA 3D9GA 3BNFA 5K3IA 3P4TA 4U83A 1WS9A 2RF7A 2JBSA 2D29A 4N5FA 3GM6A 4L38A 3AFEA 1JQIA 2VR0A 3SCEA 2CX9A 1SIQA 1GU6A 2C12A 4L1FA 4XVXA 3MDDA 4L3YA 1QDBA 2R0MA 3LG1A 3MMOA 1EGDA 3OWAA 3L1TA 3PFDA 2R0NA 2PG0A 5K3JA 2Z1QA 1RX0A 4P13A 4Q4UA 4Q5BA 4Q17A 1UKWA 4KCFA 1UDYA 1U8VA 3MKHA 2YYMA 3B96A 2WBIA 3R7KA 1EGCA 4NXLA 4W9UA 2FONA 4X28A 2YYLA 1SIRA 1EGEA 3OIBA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2RFQ A;  2OR0 A;  4Q1O A;  1IS2 A;  2JBT A;  2ZAF A;  4JEK A;  2YYK A;  1FS9 A;  2C0U A;  3D9E A;  2A1T A;  4OO2 A;  3EON A;  1R2J A;  3RKH A;  2JIF A;  3GNC A;  3HWC A;  2ZO5 A;  2YYJ A;  3D9F A;  1T9G A;  3GQT A;  2YYG A;  3M9V A;  3II9 A;  3SF6 A;  3X0X A;  3AFF A;  4M9A A;  3D1I A;  3OWM A;  5K3G A;  4Q0T A;  2OT4 A;  3LGQ A;  2YYI A;  3UU9 A;  3BNH A;  3SXQ A;  2DVL A;  3FO3 A;  4O5M A;  4ZYJ A;  1W07 A;  3X0Y A;  3SWO A;  1FS8 A;  3MDE A;  1BUC A;  3MXL A;  2UXW A;  4HR3 A;  5K3H A;  3UBR A;  4G5E A;  4ZXV A;  3BNJ A;  3TTB A;  4IRN A;  4X28 C;  2J7A A;  4L3Z A;  3D9D A;  3MPI A;  1OAH A;  1FS7 A;  3F29 A;  2IX5 A;  4IV6 A;  2VIG A;  2E80 A;  4Q5C A;  4RM7 A;  3NF4 A;  3D6B A;  2E81 A;  2REH A;  3TOR A;  3BNG A;  4KTO A;  2IX6 A;  2JBR A;  2EBA A;  4WJY A;  4L3X A;  2DDH A;  3MPJ A;  2RDZ A;  3EOM A;  1IVH A;  3S7W A;  3FCJ A;  4DOY A;  3D9G A;  3BNF A;  5K3I A;  3P4T A;  4U83 A;  1WS9 A;  2RF7 A;  2JBS A;  2D29 A;  4N5F A;  3GM6 A;  4L38 A;  3AFE A;  1JQI A;  2VR0 A;  3SCE A;  2CX9 A;  1SIQ A;  1GU6 A;  2C12 A;  4L1F A;  4XVX A;  3MDD A;  4L3Y A;  1QDB A;  2R0M A;  3LG1 A;  3MMO A;  1EGD A;  3OWA A;  3L1T A;  3PFD A;  2R0N A;  2PG0 A;  5K3J A;  2Z1Q A;  1RX0 A;  4P13 A;  4Q4U A;  4Q5B A;  4Q17 A;  1UKW A;  4KCF A;  1UDY A;  1U8V A;  3MKH A;  2YYM A;  3B96 A;  2WBI A;  3R7K A;  1EGC A;  4NXL A;  4W9U A;  2FON A;  4X28 A;  2YYL A;  1SIR A;  1EGE A;  3OIB A; 
#chains in the Genus database with same CATH topology
 2OEX A;  4G97 A;  2RFQ A;  2OR0 A;  4Q1O A;  4E01 A;  1IS2 A;  2BTZ A;  2JBT A;  1XFV A;  4H85 A;  2ZAF A;  4JEK A;  4MPC A;  2YYK A;  3C3L A;  1FS9 A;  2C0U A;  3D9E A;  1R3B A;  1RJ4 A;  2R05 A;  2A1T A;  4OO2 A;  1XG2 B;  3VKH A;  3EON A;  1R2J A;  1JM6 A;  3RKH A;  1RJ1 A;  2JIF A;  1Y8P A;  4FF3 A;  2BU5 A;  3GNC A;  3HWC A;  3X29 A;  1XFU A;  2ZO5 A;  2OEV A;  3U33 A;  2CJ5 A;  2YYJ A;  3D9F A;  2EBF X;  4MP2 A;  1T9G A;  1X91 A;  1XFW A;  5BRM A;  4V26 A;  3GQT A;  2YYG A;  5EZ3 A;  3M9V A;  5J71 A;  3II9 A;  1PK0 A;  4H7Q A;  3SF6 A;  4JIO A;  5J6A A;  1LVC A;  2XQR B;  3X0X A;  3VKG A;  3AFF A;  1K90 A;  4M9A A;  3D1I A;  3OWM A;  5K3G A;  4Q0T A;  4V25 A;  4DZY A;  2LFW A;  3LGQ A;  2OT4 A;  2YYI A;  2Q8I A;  4JIZ A;  3BNH A;  3N0R A;  2DVL A;  3SXQ A;  3UU9 A;  2AO2 A;  4O5M A;  3FO3 A;  4ZYJ A;  1Y8O A;  2YYL A;  1W07 A;  2CJ4 A;  3X0Y A;  2XS1 A;  2CJ6 A;  4P79 A;  5GJV E;  5B5V A;  3Q22 A;  2PNR A;  3SWO A;  2OJQ A;  2VF1 A;  1FS8 A;  4HKR A;  3Q23 A;  4QIC A;  3MDE A;  1BUC A;  3MXL A;  5GJW E;  2UXW A;  4HR3 A;  5K3H A;  3UBR A;  4G5E A;  4ZXV A;  3BNJ A;  3TTB A;  5M4N A;  3C2P A;  4FF4 A;  4IRN A;  4X28 C;  2J7A A;  4L3Z A;  3D9D A;  3MPI A;  4KS9 A;  4MPE A;  1OAH A;  1FS7 A;  3F29 A;  2IX5 A;  4IV6 A;  1Y8N A;  4F0X A;  1X90 A;  3TZ0 A;  4H81 A;  2VIG A;  4MPN A;  4AKI A;  2GBB A;  4AKH A;  2E80 A;  1XFX A;  4Q5C A;  4RM7 A;  3NF4 A;  3D6B A;  1SC5 A;  2E81 A;  1Y0V A;  3D2R A;  4LQQ B;  2REH A;  2Q8H A;  1K93 A;  1GJV A;  2PO4 A;  3TOR A;  3TZ5 A;  3BNG A;  4KTO A;  2IX6 A;  1PI1 A;  2JBR A;  2EBA A;  2YGW A;  4MP7 A;  4LQS B;  4WJY A;  4L3X A;  2DDH A;  3MPJ A;  2RDZ A;  3EOM A;  1IVH A;  3S7W A;  3FCJ A;  4DOY A;  3D9G A;  2EBH X;  4J1V A;  2CJ7 A;  4FF1 A;  3CRL A;  3CRK A;  3BNF A;  5K3I A;  4KSA A;  4FF2 A;  4AI6 A;  3P4T A;  3VAD A;  2R03 A;  4U83 A;  1WS9 A;  2QR4 A;  2RF7 A;  3KML A;  1GKX A;  2JBS A;  2D29 A;  4N5F A;  3GM6 A;  4L38 A;  4AKG A;  2BU8 A;  2BU2 A;  3C46 A;  3AFE A;  2ZDX A;  2AZE A;  1JQI A;  1SK6 A;  2BU6 A;  3CE2 A;  2VR0 A;  2XS8 A;  3TZ2 A;  3SCE A;  1XFZ A;  5M4K A;  3DJL A;  2CX9 A;  1SIQ A;  1GU6 A;  2HJN A;  3Q0A A;  2C12 A;  4L1F A;  4XVX A;  3MDD A;  4HKS A;  4L3Y A;  1QDB A;  3Q24 A;  2R0M A;  1S26 A;  3LG1 A;  3MMO A;  2Q8G A;  1EGD A;  3OWA A;  1XFY A;  5B5W A;  1RP3 A;  3L1T A;  3PFD A;  2R0N A;  2PG0 A;  5K3J A;  2Z1Q A;  2CJ8 A;  2R02 A;  3TZ4 A;  1RX0 A;  4P13 A;  4Q4U A;  4Q5B A;  4Q17 A;  1UKW A;  4KCF A;  1UDY A;  1U8V A;  1X8Z A;  2Q8F A;  3MKH A;  2ZDY A;  4E02 A;  5B6B A;  2YYM A;  2EC5 A;  5BRK A;  2E0A A;  3B96 A;  2WBI A;  3R7K A;  5M4M A;  1EGC A;  4NXL A;  4FZ4 A;  4W9U A;  1GKZ A;  2FON A;  5M4P A;  4KSF A;  2F6L A;  2ZKJ A;  1K8T A;  4X28 A;  4E00 A;  2BU7 A;  2FP1 A;  2FP2 A;  1SIR A;  1EGE A;  3OIB A; 
#chains in the Genus database with same CATH homology
 2RFQ A;  2OR0 A;  4Q1O A;  1IS2 A;  2JBT A;  2ZAF A;  4JEK A;  2YYK A;  1FS9 A;  2C0U A;  3D9E A;  2A1T A;  4OO2 A;  3EON A;  1R2J A;  3RKH A;  2JIF A;  3GNC A;  3HWC A;  2ZO5 A;  2YYJ A;  3D9F A;  1T9G A;  3GQT A;  2YYG A;  3M9V A;  3II9 A;  3SF6 A;  3X0X A;  3AFF A;  4M9A A;  3D1I A;  3OWM A;  5K3G A;  4Q0T A;  2OT4 A;  3LGQ A;  2YYI A;  3UU9 A;  3BNH A;  3SXQ A;  2DVL A;  3FO3 A;  4O5M A;  4ZYJ A;  1W07 A;  3X0Y A;  3SWO A;  1FS8 A;  3MDE A;  1BUC A;  3MXL A;  2UXW A;  4HR3 A;  5K3H A;  3UBR A;  4G5E A;  4ZXV A;  3BNJ A;  3TTB A;  4IRN A;  4X28 C;  2J7A A;  4L3Z A;  3D9D A;  3MPI A;  1OAH A;  1FS7 A;  3F29 A;  2IX5 A;  4IV6 A;  2VIG A;  2E80 A;  4Q5C A;  4RM7 A;  3NF4 A;  3D6B A;  2E81 A;  2REH A;  3TOR A;  3BNG A;  4KTO A;  2IX6 A;  2JBR A;  2EBA A;  4WJY A;  4L3X A;  2DDH A;  3MPJ A;  2RDZ A;  3EOM A;  1IVH A;  3S7W A;  3FCJ A;  4DOY A;  3D9G A;  3BNF A;  5K3I A;  3P4T A;  4U83 A;  1WS9 A;  2RF7 A;  2JBS A;  2D29 A;  4N5F A;  3GM6 A;  4L38 A;  3AFE A;  1JQI A;  2VR0 A;  3SCE A;  2CX9 A;  1SIQ A;  1GU6 A;  2C12 A;  4L1F A;  4XVX A;  3MDD A;  4L3Y A;  1QDB A;  2R0M A;  3LG1 A;  3MMO A;  1EGD A;  3OWA A;  3L1T A;  3PFD A;  2R0N A;  2PG0 A;  5K3J A;  2Z1Q A;  1RX0 A;  4P13 A;  4Q4U A;  4Q5B A;  4Q17 A;  1UKW A;  4KCF A;  1UDY A;  1U8V A;  3MKH A;  2YYM A;  3B96 A;  2WBI A;  3R7K A;  1EGC A;  4NXL A;  4W9U A;  2FON A;  4X28 A;  2YYL A;  1SIR A;  1EGE A;  3OIB A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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