2CX9A

Crystal structure of acyl-coa dehydrogenase
Total Genus 149
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
149
sequence length
385
structure length
385
Chain Sequence
LWFEEGAEERQVLGPFREFLKAEVAPGAAERDRTGAFPWDLVRKLAEFGVFGALVPEAYGGAGLSTRLFARMVEAIAYYDGALALTVASHNSLATGHILLAGSEAQKEAFLPKLASGEALGAWGLTEPGSGSDAAALKTKAEKVEGGWRLNGTKQFITQGSVAGVYVVMARTDPPPSPERKHQGISAFAFFRPERGLKVGRKEEKLGLTASDTAQLILEDLFVPEEALLGERGKGFYDVLRVLDGGRIGIAAMAVGLGQAALDYALAYAKGREAFGRPIAEFEGVSFKLAEAATELEAARLLYLKAAELKDAGRPFTLEAAQAKLFASEAAVKACDEAIQILGGYGYVKDYPVERYWRDARLTRIGEGTSEILKLVIARRLLEAV
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords acyl-CoA dehydrogenase
publication title Crystal structure of acyl-CoA dehydrogenase
rcsb
source organism Thermus thermophilus
molecule tags Oxidoreductase
total genus 149
structure length 385
sequence length 385
chains with identical sequence B, C, D
ec nomenclature ec 1.3.99.3: Transferred entry: 1.3.8.7, 1.3.8.8 and 1.3.8.9.
pdb deposition date 2005-06-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00441 Acyl-CoA_dh_1 Acyl-CoA dehydrogenase, C-terminal domain
A PF02770 Acyl-CoA_dh_M Acyl-CoA dehydrogenase, middle domain
A PF02771 Acyl-CoA_dh_N Acyl-CoA dehydrogenase, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.540.10 Mainly Alpha Orthogonal Bundle Butyryl-Coa Dehydrogenase, subunit A; domain 1 Acyl-CoA dehydrogenase/oxidase, N-terminal domain 2cx9A01
1.20.140.10 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A; domain 3 Butyryl-CoA Dehydrogenase, subunit A, domain 3 2cx9A03
2.40.110.10 Mainly Beta Beta Barrel Butyryl-CoA Dehydrogenase, subunit A; domain 2 Butyryl-CoA Dehydrogenase, subunit A, domain 2 2cx9A02
3D6BA 1GU6A 3R7KA 1EGEA 1WS9A 4G5EA 3UBRA 3MPIA 3NF4A 4X28C 3SCEA 3TORA 3MXLA 4HR3A 2D29A 3L1TA 2R0NA 1IS2A 3F29A 4XVXA 4Q5BA 4RM7A 1BUCA 1EGCA 5K3HA 4P13A 2J7AA 4Q17A 2RFQA 4NXLA 3BNJA 5K3GA 2YYMA 3GQTA 4X28A 2REHA 3OIBA 3AFFA 2JBTA 2VR0A 3EOMA 1IVHA 1FS8A 2ZO5A 4ZYJA 3OWMA 1U8VA 2OT4A 2IX6A 4IV6A 2DDHA 4W9UA 1OAHA 1UKWA 4Q5CA 3HWCA 2WBIA 3B96A 3D9DA 3SF6A 4KTOA 4ZXVA 3SXQA 3UU9A 4L3ZA 2C12A 3TTBA 2UXWA 3AFEA 2JBRA 4M9AA 3D1IA 1SIRA 4N5FA 3FO3A 3OWAA 1EGDA 2IX5A 2C0UA 3PFDA 3BNHA 4L1FA 4U83A 1W07A 2PG0A 3MDEA 3P4TA 2YYLA 1T9GA 4O5MA 2YYIA 3D9FA 4L3YA 5K3JA 1R2JA 3LG1A 2Z1QA 3GNCA 4DOYA 3EONA 2YYJA 3X0XA 2EBAA 1JQIA 4JEKA 4IRNA 2E80A 2E81A 4WJYA 2A1TA 2FONA 3D9EA 3MMOA 2R0MA 1QDBA 2YYGA 2YYKA 4L38A 4Q4UA 3MPJA 3S7WA 3BNFA 3BNGA 3FCJA 5K3IA 2JBSA 2VIGA 2OR0A 3MKHA 4Q0TA 1SIQA 3M9VA 2JIFA 3D9GA 3RKHA 4KCFA 3MDDA 3X0YA 3SWOA 1FS7A 2DVLA 2RDZA 4L3XA 1FS9A 1RX0A 4Q1OA 3II9A 3LGQA 4OO2A 3GM6A 1UDYA 2ZAFA 2RF7A 2CX9A
chains in the Genus database with same CATH superfamily
2BU5A 3D6BA 1GU6A 4MPCA 1X90A 3R7KA 1EGEA 4KSFA 2Q8HA 5B5VA 1WS9A 4G5EA 3UBRA 2CJ7A 3MPIA 3NF4A 4X28C 3SCEA 3TORA 3MXLA 2E0AA 4J1VA 2Q8IA 4HR3A 2D29A 3L1TA 2R0NA 1IS2A 3F29A 4XVXA 2FP1A 2BU2A 3Q24A 4Q5BA 4RM7A 2FP2A 2XS1A 3CRLA 2CJ5A 2EBHX 4E02A 4E01A 1BUCA 1S26A 5M4MA 1EGCA 5K3HA 2AZEA 4P13A 2J7AA 5J71A 5M4KA 1XFXA 4Q17A 2RFQA 1K93A 4NXLA 1GKZA 2HJNA 3BNJA 5K3GA 2YYMA 1Y8NA 4QICA 3GQTA 4X28A 1SK6A 1GJVA 4MPEA 4AKHA 2REHA 5BRKA 4LQSB 1Y8PA 2OJQA 3OIBA 3AFFA 2JBTA 2LFWA 4H81A 3Q22A 4FF3A 1Y8OA 2PO4A 2VR0A 1XG2B 3EOMA 1IVHA 4P79A 1FS8A 2BU6A 2ZO5A 4ZYJA 2OEVA 4AKIA 3VKHA 3OWMA 2AO2A 1U8VA 4KS9A 2OT4A 2IX6A 1XFUA 2ZDXA 4IV6A 2DDHA 1X8ZA 4W9UA 2VF1A 3KMLA 2Q8GA 1OAHA 2GBBA 5EZ3A 1UKWA 4Q5CA 3VADA 1R3BA 4HKRA 3VKGA 3HWCA 2WBIA 3B96A 3D9DA 1Y0VA 3C2PA 2R03A 3SF6A 4KTOA 2XQRB 5GJVE 4ZXVA 3SXQA 3UU9A 4L3ZA 2C12A 1XFWA 3TTBA 2UXWA 3AFEA 3CE2A 2XS8A 2ZDYA 2JBRA 4M9AA 2CJ4A 2EC5A 3D1IA 4F0XA 1SIRA 4G97A 4AI6A 1SC5A 1LVCA 4N5FA 3U33A 3FO3A 3OWAA 1EGDA 1JM6A 2IX5A 2C0UA 3PFDA 3BNHA 4L1FA 2R02A 4U83A 2BU7A 1W07A 2PG0A 3MDEA 1PK0A 1XFVA 1X91A 5J6AA 3P4TA 2YYLA 1T9GA 2Q8FA 3N0RA 3TZ4A 4MPNA 3D2RA 4O5MA 4V26A 2YGWA 3D9FA 2YYIA 4L3YA 5K3JA 3Q0AA 5M4NA 1R2JA 3LG1A 2Z1QA 3GNCA 4DOYA 4LQQB 3EONA 2YYJA 2QR4A 3TZ0A 2F6LA 2BU8A 4JIOA 3X0XA 2EBAA 4E00A 4AKGA 1JQIA 4JEKA 2CJ6A 4IRNA 2E80A 2E81A 4WJYA 3TZ2A 2A1TA 2FONA 1RJ1A 3D9EA 5B6BA 3MMOA 2R0MA 4FZ4A 1QDBA 4H7QA 4MP7A 4FF1A 5B5WA 4H85A 5BRMA 2YYGA 2YYKA 3CRKA 4KSAA 4DZYA 4L38A 1PI1A 4JIZA 4Q4UA 4FF2A 4HKSA 3MPJA 4MP2A 3S7WA 3BNFA 2PNRA 3Q23A 3BNGA 2BTZA 3FCJA 5K3IA 1RP3A 2R05A 5M4PA 2JBSA 2VIGA 2OR0A 3MKHA 4Q0TA 3TZ5A 1SIQA 3C3LA 3M9VA 2JIFA 3D9GA 3RKHA 4KCFA 4FF4A 5GJWE 2EBFX 3MDDA 3X0YA 3SWOA 1FS7A 2DVLA 1XFYA 2CJ8A 2RDZA 1FS9A 1RX0A 1RJ4A 2ZKJA 4L3XA 1K90A 4Q1OA 3II9A 3LGQA 3X29A 3C46A 4OO2A 1XFZA 3DJLA 3GM6A 1UDYA 1K8TA 2ZAFA 2OEXA 2RF7A 2CX9A 4V25A 1GKXA
chains in the Genus database with same CATH topology
3D6BA 1GU6A 3R7KA 1EGEA 1WS9A 4G5EA 3UBRA 3MPIA 3NF4A 4X28C 3SCEA 3TORA 3MXLA 4HR3A 2D29A 3L1TA 2R0NA 1IS2A 3F29A 4XVXA 4Q5BA 4RM7A 1BUCA 1EGCA 5K3HA 4P13A 2J7AA 4Q17A 2RFQA 4NXLA 3BNJA 5K3GA 2YYMA 3GQTA 4X28A 2REHA 3OIBA 3AFFA 2JBTA 2VR0A 3EOMA 1IVHA 1FS8A 2ZO5A 4ZYJA 3OWMA 1U8VA 2OT4A 2IX6A 4IV6A 2DDHA 4W9UA 1OAHA 1UKWA 4Q5CA 3HWCA 2WBIA 3B96A 3D9DA 3SF6A 4KTOA 4ZXVA 3SXQA 3UU9A 4L3ZA 2C12A 3TTBA 2UXWA 3AFEA 2JBRA 4M9AA 3D1IA 1SIRA 4N5FA 3FO3A 3OWAA 1EGDA 2IX5A 2C0UA 3PFDA 3BNHA 4L1FA 4U83A 1W07A 2PG0A 3MDEA 3P4TA 2YYLA 1T9GA 4O5MA 2YYIA 3D9FA 4L3YA 5K3JA 1R2JA 3LG1A 2Z1QA 3GNCA 4DOYA 3EONA 2YYJA 3X0XA 2EBAA 1JQIA 4JEKA 4IRNA 2E80A 2E81A 4WJYA 2A1TA 2FONA 3D9EA 3MMOA 2R0MA 1QDBA 2YYGA 2YYKA 4L38A 4Q4UA 3MPJA 3S7WA 3BNFA 3BNGA 3FCJA 5K3IA 2JBSA 2VIGA 2OR0A 3MKHA 4Q0TA 1SIQA 3M9VA 2JIFA 3D9GA 3RKHA 4KCFA 3MDDA 3X0YA 3SWOA 1FS7A 2DVLA 2RDZA 4L3XA 1FS9A 1RX0A 4Q1OA 3II9A 3LGQA 4OO2A 3GM6A 1UDYA 2ZAFA 2RF7A 2CX9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3D6B A;  1GU6 A;  3R7K A;  1EGE A;  1WS9 A;  4G5E A;  3UBR A;  3MPI A;  3NF4 A;  4X28 C;  3SCE A;  3TOR A;  3MXL A;  4HR3 A;  2D29 A;  3L1T A;  2R0N A;  1IS2 A;  3F29 A;  4XVX A;  4Q5B A;  4RM7 A;  1BUC A;  1EGC A;  5K3H A;  4P13 A;  2J7A A;  4Q17 A;  2RFQ A;  4NXL A;  3BNJ A;  5K3G A;  2YYM A;  3GQT A;  4X28 A;  2REH A;  3OIB A;  3AFF A;  2JBT A;  2VR0 A;  3EOM A;  1IVH A;  1FS8 A;  2ZO5 A;  4ZYJ A;  3OWM A;  1U8V A;  2OT4 A;  2IX6 A;  4IV6 A;  2DDH A;  4W9U A;  1OAH A;  1UKW A;  4Q5C A;  3HWC A;  2WBI A;  3B96 A;  3D9D A;  3SF6 A;  4KTO A;  4ZXV A;  3SXQ A;  3UU9 A;  4L3Z A;  2C12 A;  3TTB A;  2UXW A;  3AFE A;  2JBR A;  4M9A A;  3D1I A;  1SIR A;  4N5F A;  3FO3 A;  3OWA A;  1EGD A;  2IX5 A;  2C0U A;  3PFD A;  3BNH A;  4L1F A;  4U83 A;  1W07 A;  2PG0 A;  3MDE A;  3P4T A;  2YYL A;  1T9G A;  4O5M A;  2YYI A;  3D9F A;  4L3Y A;  5K3J A;  1R2J A;  3LG1 A;  2Z1Q A;  3GNC A;  4DOY A;  3EON A;  2YYJ A;  3X0X A;  2EBA A;  1JQI A;  4JEK A;  4IRN A;  2E80 A;  2E81 A;  4WJY A;  2A1T A;  2FON A;  3D9E A;  3MMO A;  2R0M A;  1QDB A;  2YYG A;  2YYK A;  4L38 A;  4Q4U A;  3MPJ A;  3S7W A;  3BNF A;  3BNG A;  3FCJ A;  5K3I A;  2JBS A;  2VIG A;  2OR0 A;  3MKH A;  4Q0T A;  1SIQ A;  3M9V A;  2JIF A;  3D9G A;  3RKH A;  4KCF A;  3MDD A;  3X0Y A;  3SWO A;  1FS7 A;  2DVL A;  2RDZ A;  4L3X A;  1FS9 A;  1RX0 A;  4Q1O A;  3II9 A;  3LGQ A;  4OO2 A;  3GM6 A;  1UDY A;  2ZAF A;  2RF7 A;  2CX9 A; 
#chains in the Genus database with same CATH topology
 2BU5 A;  3D6B A;  1GU6 A;  4MPC A;  1X90 A;  3R7K A;  1EGE A;  4KSF A;  2Q8H A;  5B5V A;  1WS9 A;  4G5E A;  3UBR A;  2CJ7 A;  3MPI A;  3NF4 A;  4X28 C;  3SCE A;  3TOR A;  3MXL A;  2E0A A;  4J1V A;  2Q8I A;  4HR3 A;  2D29 A;  3L1T A;  2R0N A;  1IS2 A;  3F29 A;  4XVX A;  2FP1 A;  2BU2 A;  3Q24 A;  4Q5B A;  4RM7 A;  2FP2 A;  2XS1 A;  3CRL A;  2CJ5 A;  2EBH X;  4E02 A;  4E01 A;  1BUC A;  1S26 A;  5M4M A;  1EGC A;  5K3H A;  2AZE A;  4P13 A;  2J7A A;  5J71 A;  5M4K A;  1XFX A;  4Q17 A;  2RFQ A;  1K93 A;  4NXL A;  1GKZ A;  2HJN A;  3BNJ A;  5K3G A;  2YYM A;  1Y8N A;  4QIC A;  3GQT A;  4X28 A;  1SK6 A;  1GJV A;  4MPE A;  4AKH A;  2REH A;  5BRK A;  4LQS B;  1Y8P A;  2OJQ A;  3OIB A;  3AFF A;  2JBT A;  2LFW A;  4H81 A;  3Q22 A;  4FF3 A;  1Y8O A;  2PO4 A;  2VR0 A;  1XG2 B;  3EOM A;  1IVH A;  4P79 A;  1FS8 A;  2BU6 A;  2ZO5 A;  4ZYJ A;  2OEV A;  4AKI A;  3VKH A;  3OWM A;  2AO2 A;  1U8V A;  4KS9 A;  2OT4 A;  2IX6 A;  1XFU A;  2ZDX A;  4IV6 A;  2DDH A;  1X8Z A;  4W9U A;  2VF1 A;  3KML A;  2Q8G A;  1OAH A;  2GBB A;  5EZ3 A;  1UKW A;  4Q5C A;  3VAD A;  1R3B A;  4HKR A;  3VKG A;  3HWC A;  2WBI A;  3B96 A;  3D9D A;  1Y0V A;  3C2P A;  2R03 A;  3SF6 A;  4KTO A;  2XQR B;  5GJV E;  4ZXV A;  3SXQ A;  3UU9 A;  4L3Z A;  2C12 A;  1XFW A;  3TTB A;  2UXW A;  3AFE A;  3CE2 A;  2XS8 A;  2ZDY A;  2JBR A;  4M9A A;  2CJ4 A;  2EC5 A;  3D1I A;  4F0X A;  1SIR A;  4G97 A;  4AI6 A;  1SC5 A;  1LVC A;  4N5F A;  3U33 A;  3FO3 A;  3OWA A;  1EGD A;  1JM6 A;  2IX5 A;  2C0U A;  3PFD A;  3BNH A;  4L1F A;  2R02 A;  4U83 A;  2BU7 A;  1W07 A;  2PG0 A;  3MDE A;  1PK0 A;  1XFV A;  1X91 A;  5J6A A;  3P4T A;  2YYL A;  1T9G A;  2Q8F A;  3N0R A;  3TZ4 A;  4MPN A;  3D2R A;  4O5M A;  4V26 A;  2YGW A;  3D9F A;  2YYI A;  4L3Y A;  5K3J A;  3Q0A A;  5M4N A;  1R2J A;  3LG1 A;  2Z1Q A;  3GNC A;  4DOY A;  4LQQ B;  3EON A;  2YYJ A;  2QR4 A;  3TZ0 A;  2F6L A;  2BU8 A;  4JIO A;  3X0X A;  2EBA A;  4E00 A;  4AKG A;  1JQI A;  4JEK A;  2CJ6 A;  4IRN A;  2E80 A;  2E81 A;  4WJY A;  3TZ2 A;  2A1T A;  2FON A;  1RJ1 A;  3D9E A;  5B6B A;  3MMO A;  2R0M A;  4FZ4 A;  1QDB A;  4H7Q A;  4MP7 A;  4FF1 A;  5B5W A;  4H85 A;  5BRM A;  2YYG A;  2YYK A;  3CRK A;  4KSA A;  4DZY A;  4L38 A;  1PI1 A;  4JIZ A;  4Q4U A;  4FF2 A;  4HKS A;  3MPJ A;  4MP2 A;  3S7W A;  3BNF A;  2PNR A;  3Q23 A;  3BNG A;  2BTZ A;  3FCJ A;  5K3I A;  1RP3 A;  2R05 A;  5M4P A;  2JBS A;  2VIG A;  2OR0 A;  3MKH A;  4Q0T A;  3TZ5 A;  1SIQ A;  3C3L A;  3M9V A;  2JIF A;  3D9G A;  3RKH A;  4KCF A;  4FF4 A;  5GJW E;  2EBF X;  3MDD A;  3X0Y A;  3SWO A;  1FS7 A;  2DVL A;  1XFY A;  2CJ8 A;  2RDZ A;  1FS9 A;  1RX0 A;  1RJ4 A;  2ZKJ A;  4L3X A;  1K90 A;  4Q1O A;  3II9 A;  3LGQ A;  3X29 A;  3C46 A;  4OO2 A;  1XFZ A;  3DJL A;  3GM6 A;  1UDY A;  1K8T A;  2ZAF A;  2OEX A;  2RF7 A;  2CX9 A;  4V25 A;  1GKX A; 
#chains in the Genus database with same CATH homology
 3D6B A;  1GU6 A;  3R7K A;  1EGE A;  1WS9 A;  4G5E A;  3UBR A;  3MPI A;  3NF4 A;  4X28 C;  3SCE A;  3TOR A;  3MXL A;  4HR3 A;  2D29 A;  3L1T A;  2R0N A;  1IS2 A;  3F29 A;  4XVX A;  4Q5B A;  4RM7 A;  1BUC A;  1EGC A;  5K3H A;  4P13 A;  2J7A A;  4Q17 A;  2RFQ A;  4NXL A;  3BNJ A;  5K3G A;  2YYM A;  3GQT A;  4X28 A;  2REH A;  3OIB A;  3AFF A;  2JBT A;  2VR0 A;  3EOM A;  1IVH A;  1FS8 A;  2ZO5 A;  4ZYJ A;  3OWM A;  1U8V A;  2OT4 A;  2IX6 A;  4IV6 A;  2DDH A;  4W9U A;  1OAH A;  1UKW A;  4Q5C A;  3HWC A;  2WBI A;  3B96 A;  3D9D A;  3SF6 A;  4KTO A;  4ZXV A;  3SXQ A;  3UU9 A;  4L3Z A;  2C12 A;  3TTB A;  2UXW A;  3AFE A;  2JBR A;  4M9A A;  3D1I A;  1SIR A;  4N5F A;  3FO3 A;  3OWA A;  1EGD A;  2IX5 A;  2C0U A;  3PFD A;  3BNH A;  4L1F A;  4U83 A;  1W07 A;  2PG0 A;  3MDE A;  3P4T A;  2YYL A;  1T9G A;  4O5M A;  2YYI A;  3D9F A;  4L3Y A;  5K3J A;  1R2J A;  3LG1 A;  2Z1Q A;  3GNC A;  4DOY A;  3EON A;  2YYJ A;  3X0X A;  2EBA A;  1JQI A;  4JEK A;  4IRN A;  2E80 A;  2E81 A;  4WJY A;  2A1T A;  2FON A;  3D9E A;  3MMO A;  2R0M A;  1QDB A;  2YYG A;  2YYK A;  4L38 A;  4Q4U A;  3MPJ A;  3S7W A;  3BNF A;  3BNG A;  3FCJ A;  5K3I A;  2JBS A;  2VIG A;  2OR0 A;  3MKH A;  4Q0T A;  1SIQ A;  3M9V A;  2JIF A;  3D9G A;  3RKH A;  4KCF A;  3MDD A;  3X0Y A;  3SWO A;  1FS7 A;  2DVL A;  2RDZ A;  4L3X A;  1FS9 A;  1RX0 A;  4Q1O A;  3II9 A;  3LGQ A;  4OO2 A;  3GM6 A;  1UDY A;  2ZAF A;  2RF7 A;  2CX9 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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