2CX9A

Crystal structure of acyl-coa dehydrogenase
Total Genus 149
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
149
sequence length
385
structure length
385
Chain Sequence
LWFEEGAEERQVLGPFREFLKAEVAPGAAERDRTGAFPWDLVRKLAEFGVFGALVPEAYGGAGLSTRLFARMVEAIAYYDGALALTVASHNSLATGHILLAGSEAQKEAFLPKLASGEALGAWGLTEPGSGSDAAALKTKAEKVEGGWRLNGTKQFITQGSVAGVYVVMARTDPPPSPERKHQGISAFAFFRPERGLKVGRKEEKLGLTASDTAQLILEDLFVPEEALLGERGKGFYDVLRVLDGGRIGIAAMAVGLGQAALDYALAYAKGREAFGRPIAEFEGVSFKLAEAATELEAARLLYLKAAELKDAGRPFTLEAAQAKLFASEAAVKACDEAIQILGGYGYVKDYPVERYWRDARLTRIGEGTSEILKLVIARRLLEAV
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords acyl-CoA dehydrogenase
publication title Crystal structure of acyl-CoA dehydrogenase
rcsb
source organism Thermus thermophilus
molecule tags Oxidoreductase
total genus 149
structure length 385
sequence length 385
chains with identical sequence B, C, D
ec nomenclature ec 1.3.99.3: Transferred entry: 1.3.8.7, 1.3.8.8 and 1.3.8.9.
pdb deposition date 2005-06-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00441 Acyl-CoA_dh_1 Acyl-CoA dehydrogenase, C-terminal domain
A PF02770 Acyl-CoA_dh_M Acyl-CoA dehydrogenase, middle domain
A PF02771 Acyl-CoA_dh_N Acyl-CoA dehydrogenase, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.540.10 Mainly Alpha Orthogonal Bundle Butyryl-Coa Dehydrogenase, subunit A; domain 1 Acyl-CoA dehydrogenase/oxidase, N-terminal domain 2cx9A01
1.20.140.10 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A; domain 3 Butyryl-CoA Dehydrogenase, subunit A, domain 3 2cx9A03
2.40.110.10 Mainly Beta Beta Barrel Butyryl-CoA Dehydrogenase, subunit A; domain 2 Butyryl-CoA Dehydrogenase, subunit A, domain 2 2cx9A02
3SCEA 3D9EA 4NXLA 3HWCA 2RDZA 5K3IA 4N5FA 3MDDA 2JBTA 3SF6A 2RF7A 2YYGA 3D9DA 4L3ZA 5K3GA 3SWOA 2VR0A 2OT4A 1UDYA 4RM7A 4L3YA 2JBSA 2YYIA 2JIFA 2WBIA 1FS7A 3II9A 4IRNA 3BNGA 3LGQA 2YYKA 2YYMA 4Q5BA 1WS9A 1UKWA 4W9UA 3P4TA 1U8VA 2JBRA 1FS8A 2RFQA 3F29A 4L1FA 4Q4UA 4ZXVA 2ZAFA 4G5EA 2FONA 3BNJA 2EBAA 2Z1QA 3FCJA 4Q1OA 1SIRA 3PFDA 1OAHA 1JQIA 3GQTA 3OIBA 3M9VA 4O5MA 3OWMA 4L3XA 4U83A 3SXQA 3TTBA 4X28A 3TORA 1EGDA 2IX6A 3MDEA 2DVLA 2E81A 2OR0A 4JEKA 3MKHA 3AFFA 3D1IA 3BNHA 3MPJA 4M9AA 1EGEA 2PG0A 1RX0A 2R0NA 3X0YA 3S7WA 3X0XA 2C12A 4ZYJA 3LG1A 2D29A 3RKHA 3R7KA 3EONA 1IVHA 1QDBA 3GNCA 3D9FA 3UU9A 2R0MA 1R2JA 2E80A 1EGCA 1BUCA 4KTOA 3BNFA 3EOMA 1W07A 2REHA 2UXWA 2ZO5A 2J7AA 2DDHA 1T9GA 2IX5A 5K3HA 2YYLA 4Q17A 3UBRA 5K3JA 1FS9A 4HR3A 3NF4A 4OO2A 4DOYA 1GU6A 1IS2A 4P13A 3MMOA 2CX9A 3GM6A 4Q5CA 4KCFA 4X28C 2YYJA 3D6BA 3AFEA 2A1TA 1SIQA 4XVXA 3D9GA 2VIGA 3MPIA 3B96A 2C0UA 3OWAA 4Q0TA 3L1TA 3FO3A 4WJYA 4L38A 4IV6A 3MXLA
chains in the Genus database with same CATH superfamily
4FZ4A 3SCEA 3D9EA 4NXLA 4LQQB 2GBBA 2Q8HA 3HWCA 1S26A 2RDZA 3C46A 5K3IA 2ZDYA 2FP2A 4N5FA 3MDDA 2JBTA 3SF6A 1GKXA 2RF7A 2YYGA 3D9DA 4P79A 5GJVE 4L3ZA 3Q24A 5K3GA 3SWOA 2BU5A 2E0AA 2VR0A 2OT4A 1UDYA 4MPNA 4E01A 4RM7A 4MP2A 4AKGA 3VKGA 3KMLA 1XFXA 4KSFA 4L3YA 4G97A 2JBSA 4HKSA 2AO2A 2AZEA 2YYIA 2JIFA 2WBIA 4V25A 2Q8IA 5BRKA 5EZ3A 1FS7A 1K93A 4FF1A 3II9A 4IRNA 1RJ4A 2CJ8A 3BNGA 3LGQA 3Q23A 4H85A 4AI6A 3VKHA 2YYKA 4FF3A 2YYMA 4Q5BA 1Y8PA 1WS9A 1UKWA 4W9UA 4FF2A 3P4TA 1R3BA 2JBRA 1U8VA 4E02A 1FS8A 1SC5A 5M4PA 4MPEA 2RFQA 3F29A 4L1FA 4JIZA 4Q4UA 4ZXVA 2ZAFA 1XFWA 4G5EA 2FONA 3CRLA 4MPCA 4KSAA 3X29A 3BNJA 2EBAA 2Z1QA 3FCJA 2BU2A 4Q1OA 5J6AA 2R05A 1SIRA 3PFDA 1XFVA 2QR4A 2XS8A 2ZKJA 5M4MA 1OAHA 3TZ0A 5M4NA 1PK0A 2EC5A 1JQIA 3GQTA 3OIBA 3M9VA 4O5MA 3C3LA 1K90A 4DZYA 3OWMA 4H7QA 4L3XA 4U83A 3SXQA 2R02A 3TTBA 1K8TA 4X28A 3TZ5A 3TORA 1EGDA 2IX6A 3MDEA 2BU6A 4QICA 2BTZA 2BU8A 2DVLA 1Y0VA 4FF4A 5BRMA 2E81A 3U33A 2OR0A 4JEKA 3MKHA 3AFFA 3D1IA 1RJ1A 5B5VA 3BNHA 3MPJA 1Y8NA 3Q22A 4M9AA 1EGEA 2PG0A 1RX0A 2R0NA 3X0YA 3S7WA 3X0XA 2C12A 1XG2B 5GJWE 2ZDXA 4ZYJA 3DJLA 3LG1A 2D29A 3RKHA 3CE2A 4E00A 3R7KA 1XFYA 1XFUA 2HJNA 2OEVA 2PNRA 1GJVA 3EONA 1IVHA 1QDBA 3GNCA 3D9FA 3UU9A 1X91A 2R0MA 4H81A 4F0XA 4J1VA 5M4KA 1R2JA 2PO4A 1X90A 2E80A 4AKIA 1EGCA 5B5WA 1BUCA 2EBFX 4JIOA 2OJQA 4KTOA 2OEXA 1GKZA 2CJ7A 3CRKA 3BNFA 3EOMA 1SK6A 1W07A 5J71A 2REHA 2Q8FA 2UXWA 2ZO5A 2J7AA 2XQRB 2DDHA 1T9GA 2IX5A 5K3HA 2XS1A 2YYLA 3N0RA 3VADA 1PI1A 4Q17A 4AKHA 2CJ5A 2CJ6A 3UBRA 4HKRA 5K3JA 1JM6A 1RP3A 1FS9A 4HR3A 2FP1A 3D2RA 3NF4A 4MP7A 1X8ZA 4OO2A 4DOYA 1GU6A 2Q8GA 1IS2A 2VF1A 1Y8OA 4LQSB 4V26A 3TZ4A 4P13A 3MMOA 2YGWA 2CX9A 1XFZA 3GM6A 4Q5CA 4KCFA 4X28C 2BU7A 2YYJA 3D6BA 3AFEA 2A1TA 2CJ4A 1SIQA 4XVXA 2EBHX 2F6LA 3D9GA 2VIGA 3MPIA 3B96A 1LVCA 3TZ2A 5B6BA 3Q0AA 2C0UA 3OWAA 2R03A 4Q0TA 4KS9A 3L1TA 3FO3A 4WJYA 4L38A 2LFWA 4IV6A 3MXLA 3C2PA
chains in the Genus database with same CATH topology
3SCEA 3D9EA 4NXLA 3HWCA 2RDZA 5K3IA 4N5FA 3MDDA 2JBTA 3SF6A 2RF7A 2YYGA 3D9DA 4L3ZA 5K3GA 3SWOA 2VR0A 2OT4A 1UDYA 4RM7A 4L3YA 2JBSA 2YYIA 2JIFA 2WBIA 1FS7A 3II9A 4IRNA 3BNGA 3LGQA 2YYKA 2YYMA 4Q5BA 1WS9A 1UKWA 4W9UA 3P4TA 1U8VA 2JBRA 1FS8A 2RFQA 3F29A 4L1FA 4Q4UA 4ZXVA 2ZAFA 4G5EA 2FONA 3BNJA 2EBAA 2Z1QA 3FCJA 4Q1OA 1SIRA 3PFDA 1OAHA 1JQIA 3GQTA 3OIBA 3M9VA 4O5MA 3OWMA 4L3XA 4U83A 3SXQA 3TTBA 4X28A 3TORA 1EGDA 2IX6A 3MDEA 2DVLA 2E81A 2OR0A 4JEKA 3MKHA 3AFFA 3D1IA 3BNHA 3MPJA 4M9AA 1EGEA 2PG0A 1RX0A 2R0NA 3X0YA 3S7WA 3X0XA 2C12A 4ZYJA 3LG1A 2D29A 3RKHA 3R7KA 3EONA 1IVHA 1QDBA 3GNCA 3D9FA 3UU9A 2R0MA 1R2JA 2E80A 1EGCA 1BUCA 4KTOA 3BNFA 3EOMA 1W07A 2REHA 2UXWA 2ZO5A 2J7AA 2DDHA 1T9GA 2IX5A 5K3HA 2YYLA 4Q17A 3UBRA 5K3JA 1FS9A 4HR3A 3NF4A 4OO2A 4DOYA 1GU6A 1IS2A 4P13A 3MMOA 2CX9A 3GM6A 4Q5CA 4KCFA 4X28C 2YYJA 3D6BA 3AFEA 2A1TA 1SIQA 4XVXA 3D9GA 2VIGA 3MPIA 3B96A 2C0UA 3OWAA 4Q0TA 3L1TA 3FO3A 4WJYA 4L38A 4IV6A 3MXLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3SCE A;  3D9E A;  4NXL A;  3HWC A;  2RDZ A;  5K3I A;  4N5F A;  3MDD A;  2JBT A;  3SF6 A;  2RF7 A;  2YYG A;  3D9D A;  4L3Z A;  5K3G A;  3SWO A;  2VR0 A;  2OT4 A;  1UDY A;  4RM7 A;  4L3Y A;  2JBS A;  2YYI A;  2JIF A;  2WBI A;  1FS7 A;  3II9 A;  4IRN A;  3BNG A;  3LGQ A;  2YYK A;  2YYM A;  4Q5B A;  1WS9 A;  1UKW A;  4W9U A;  3P4T A;  1U8V A;  2JBR A;  1FS8 A;  2RFQ A;  3F29 A;  4L1F A;  4Q4U A;  4ZXV A;  2ZAF A;  4G5E A;  2FON A;  3BNJ A;  2EBA A;  2Z1Q A;  3FCJ A;  4Q1O A;  1SIR A;  3PFD A;  1OAH A;  1JQI A;  3GQT A;  3OIB A;  3M9V A;  4O5M A;  3OWM A;  4L3X A;  4U83 A;  3SXQ A;  3TTB A;  4X28 A;  3TOR A;  1EGD A;  2IX6 A;  3MDE A;  2DVL A;  2E81 A;  2OR0 A;  4JEK A;  3MKH A;  3AFF A;  3D1I A;  3BNH A;  3MPJ A;  4M9A A;  1EGE A;  2PG0 A;  1RX0 A;  2R0N A;  3X0Y A;  3S7W A;  3X0X A;  2C12 A;  4ZYJ A;  3LG1 A;  2D29 A;  3RKH A;  3R7K A;  3EON A;  1IVH A;  1QDB A;  3GNC A;  3D9F A;  3UU9 A;  2R0M A;  1R2J A;  2E80 A;  1EGC A;  1BUC A;  4KTO A;  3BNF A;  3EOM A;  1W07 A;  2REH A;  2UXW A;  2ZO5 A;  2J7A A;  2DDH A;  1T9G A;  2IX5 A;  5K3H A;  2YYL A;  4Q17 A;  3UBR A;  5K3J A;  1FS9 A;  4HR3 A;  3NF4 A;  4OO2 A;  4DOY A;  1GU6 A;  1IS2 A;  4P13 A;  3MMO A;  2CX9 A;  3GM6 A;  4Q5C A;  4KCF A;  4X28 C;  2YYJ A;  3D6B A;  3AFE A;  2A1T A;  1SIQ A;  4XVX A;  3D9G A;  2VIG A;  3MPI A;  3B96 A;  2C0U A;  3OWA A;  4Q0T A;  3L1T A;  3FO3 A;  4WJY A;  4L38 A;  4IV6 A;  3MXL A; 
#chains in the Genus database with same CATH topology
 4FZ4 A;  3SCE A;  3D9E A;  4NXL A;  4LQQ B;  2GBB A;  2Q8H A;  3HWC A;  1S26 A;  2RDZ A;  3C46 A;  5K3I A;  2ZDY A;  2FP2 A;  4N5F A;  3MDD A;  2JBT A;  3SF6 A;  1GKX A;  2RF7 A;  2YYG A;  3D9D A;  4P79 A;  5GJV E;  4L3Z A;  3Q24 A;  5K3G A;  3SWO A;  2BU5 A;  2E0A A;  2VR0 A;  2OT4 A;  1UDY A;  4MPN A;  4E01 A;  4RM7 A;  4MP2 A;  4AKG A;  3VKG A;  3KML A;  1XFX A;  4KSF A;  4L3Y A;  4G97 A;  2JBS A;  4HKS A;  2AO2 A;  2AZE A;  2YYI A;  2JIF A;  2WBI A;  4V25 A;  2Q8I A;  5BRK A;  5EZ3 A;  1FS7 A;  1K93 A;  4FF1 A;  3II9 A;  4IRN A;  1RJ4 A;  2CJ8 A;  3BNG A;  3LGQ A;  3Q23 A;  4H85 A;  4AI6 A;  3VKH A;  2YYK A;  4FF3 A;  2YYM A;  4Q5B A;  1Y8P A;  1WS9 A;  1UKW A;  4W9U A;  4FF2 A;  3P4T A;  1R3B A;  2JBR A;  1U8V A;  4E02 A;  1FS8 A;  1SC5 A;  5M4P A;  4MPE A;  2RFQ A;  3F29 A;  4L1F A;  4JIZ A;  4Q4U A;  4ZXV A;  2ZAF A;  1XFW A;  4G5E A;  2FON A;  3CRL A;  4MPC A;  4KSA A;  3X29 A;  3BNJ A;  2EBA A;  2Z1Q A;  3FCJ A;  2BU2 A;  4Q1O A;  5J6A A;  2R05 A;  1SIR A;  3PFD A;  1XFV A;  2QR4 A;  2XS8 A;  2ZKJ A;  5M4M A;  1OAH A;  3TZ0 A;  5M4N A;  1PK0 A;  2EC5 A;  1JQI A;  3GQT A;  3OIB A;  3M9V A;  4O5M A;  3C3L A;  1K90 A;  4DZY A;  3OWM A;  4H7Q A;  4L3X A;  4U83 A;  3SXQ A;  2R02 A;  3TTB A;  1K8T A;  4X28 A;  3TZ5 A;  3TOR A;  1EGD A;  2IX6 A;  3MDE A;  2BU6 A;  4QIC A;  2BTZ A;  2BU8 A;  2DVL A;  1Y0V A;  4FF4 A;  5BRM A;  2E81 A;  3U33 A;  2OR0 A;  4JEK A;  3MKH A;  3AFF A;  3D1I A;  1RJ1 A;  5B5V A;  3BNH A;  3MPJ A;  1Y8N A;  3Q22 A;  4M9A A;  1EGE A;  2PG0 A;  1RX0 A;  2R0N A;  3X0Y A;  3S7W A;  3X0X A;  2C12 A;  1XG2 B;  5GJW E;  2ZDX A;  4ZYJ A;  3DJL A;  3LG1 A;  2D29 A;  3RKH A;  3CE2 A;  4E00 A;  3R7K A;  1XFY A;  1XFU A;  2HJN A;  2OEV A;  2PNR A;  1GJV A;  3EON A;  1IVH A;  1QDB A;  3GNC A;  3D9F A;  3UU9 A;  1X91 A;  2R0M A;  4H81 A;  4F0X A;  4J1V A;  5M4K A;  1R2J A;  2PO4 A;  1X90 A;  2E80 A;  4AKI A;  1EGC A;  5B5W A;  1BUC A;  2EBF X;  4JIO A;  2OJQ A;  4KTO A;  2OEX A;  1GKZ A;  2CJ7 A;  3CRK A;  3BNF A;  3EOM A;  1SK6 A;  1W07 A;  5J71 A;  2REH A;  2Q8F A;  2UXW A;  2ZO5 A;  2J7A A;  2XQR B;  2DDH A;  1T9G A;  2IX5 A;  5K3H A;  2XS1 A;  2YYL A;  3N0R A;  3VAD A;  1PI1 A;  4Q17 A;  4AKH A;  2CJ5 A;  2CJ6 A;  3UBR A;  4HKR A;  5K3J A;  1JM6 A;  1RP3 A;  1FS9 A;  4HR3 A;  2FP1 A;  3D2R A;  3NF4 A;  4MP7 A;  1X8Z A;  4OO2 A;  4DOY A;  1GU6 A;  2Q8G A;  1IS2 A;  2VF1 A;  1Y8O A;  4LQS B;  4V26 A;  3TZ4 A;  4P13 A;  3MMO A;  2YGW A;  2CX9 A;  1XFZ A;  3GM6 A;  4Q5C A;  4KCF A;  4X28 C;  2BU7 A;  2YYJ A;  3D6B A;  3AFE A;  2A1T A;  2CJ4 A;  1SIQ A;  4XVX A;  2EBH X;  2F6L A;  3D9G A;  2VIG A;  3MPI A;  3B96 A;  1LVC A;  3TZ2 A;  5B6B A;  3Q0A A;  2C0U A;  3OWA A;  2R03 A;  4Q0T A;  4KS9 A;  3L1T A;  3FO3 A;  4WJY A;  4L38 A;  2LFW A;  4IV6 A;  3MXL A;  3C2P A; 
#chains in the Genus database with same CATH homology
 3SCE A;  3D9E A;  4NXL A;  3HWC A;  2RDZ A;  5K3I A;  4N5F A;  3MDD A;  2JBT A;  3SF6 A;  2RF7 A;  2YYG A;  3D9D A;  4L3Z A;  5K3G A;  3SWO A;  2VR0 A;  2OT4 A;  1UDY A;  4RM7 A;  4L3Y A;  2JBS A;  2YYI A;  2JIF A;  2WBI A;  1FS7 A;  3II9 A;  4IRN A;  3BNG A;  3LGQ A;  2YYK A;  2YYM A;  4Q5B A;  1WS9 A;  1UKW A;  4W9U A;  3P4T A;  1U8V A;  2JBR A;  1FS8 A;  2RFQ A;  3F29 A;  4L1F A;  4Q4U A;  4ZXV A;  2ZAF A;  4G5E A;  2FON A;  3BNJ A;  2EBA A;  2Z1Q A;  3FCJ A;  4Q1O A;  1SIR A;  3PFD A;  1OAH A;  1JQI A;  3GQT A;  3OIB A;  3M9V A;  4O5M A;  3OWM A;  4L3X A;  4U83 A;  3SXQ A;  3TTB A;  4X28 A;  3TOR A;  1EGD A;  2IX6 A;  3MDE A;  2DVL A;  2E81 A;  2OR0 A;  4JEK A;  3MKH A;  3AFF A;  3D1I A;  3BNH A;  3MPJ A;  4M9A A;  1EGE A;  2PG0 A;  1RX0 A;  2R0N A;  3X0Y A;  3S7W A;  3X0X A;  2C12 A;  4ZYJ A;  3LG1 A;  2D29 A;  3RKH A;  3R7K A;  3EON A;  1IVH A;  1QDB A;  3GNC A;  3D9F A;  3UU9 A;  2R0M A;  1R2J A;  2E80 A;  1EGC A;  1BUC A;  4KTO A;  3BNF A;  3EOM A;  1W07 A;  2REH A;  2UXW A;  2ZO5 A;  2J7A A;  2DDH A;  1T9G A;  2IX5 A;  5K3H A;  2YYL A;  4Q17 A;  3UBR A;  5K3J A;  1FS9 A;  4HR3 A;  3NF4 A;  4OO2 A;  4DOY A;  1GU6 A;  1IS2 A;  4P13 A;  3MMO A;  2CX9 A;  3GM6 A;  4Q5C A;  4KCF A;  4X28 C;  2YYJ A;  3D6B A;  3AFE A;  2A1T A;  1SIQ A;  4XVX A;  3D9G A;  2VIG A;  3MPI A;  3B96 A;  2C0U A;  3OWA A;  4Q0T A;  3L1T A;  3FO3 A;  4WJY A;  4L38 A;  4IV6 A;  3MXL A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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