3MKHA

Podospora anserina nitroalkane oxidase
Total Genus 155
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
155
sequence length
426
structure length
426
Chain Sequence
AIDFHLSASQKGTYQAARSLARNLLMPARQTYLQHPPNSPLRFQSTQPTYAAAVSAGILKGQISPAHGGTGGTLIESAILVEECYSVEPSAALTIFATGLGLTPINLAAGPQHAEFLAPFLSGEGSPLASLVFSEPGGVANALEKGAPGFQTTARLEGDEWVINGEKMWATNCAGWDFKGCDLACVVCRDATTPLEEGQDPENKVMIILVTRADLDRNGEGSFEVLRHVATPGHTSVSGPHVRYTNVRVPTKNVLCPAGQGAKVAFGAFDGSAVLVGAMGVGLMRAAFDAALKFAKEDNRGGAVPLLERQAFADLLSGVKIQTEAARALTWKAAHAMENGPGDYDARRELALAAKVFCSEAAVKACTDVINAVGISAYDLQRPFSDLLNTAVVLPIFDGGNVGIRRRHLQQLMLKPTYDAWSSTYG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords NITROALKANE OXIDASE
publication title Identification of a hypothetical protein from Podospora anserina as a nitroalkane oxidase.
pubmed doi rcsb
source organism Podospora anserina
total genus 155
structure length 426
sequence length 426
chains with identical sequence B, C, D
ec nomenclature ec 1.7.3.1: Nitroalkane oxidase.
pdb deposition date 2010-04-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00441 Acyl-CoA_dh_1 Acyl-CoA dehydrogenase, C-terminal domain
A PF02771 Acyl-CoA_dh_N Acyl-CoA dehydrogenase, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.540.10 Mainly Alpha Orthogonal Bundle Butyryl-Coa Dehydrogenase, subunit A; domain 1 Acyl-CoA dehydrogenase/oxidase, N-terminal domain 3mkhA01
1.20.140.10 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A; domain 3 Butyryl-CoA Dehydrogenase, subunit A, domain 3 3mkhA03
2.40.110.10 Mainly Beta Beta Barrel Butyryl-CoA Dehydrogenase, subunit A; domain 2 Butyryl-CoA Dehydrogenase, subunit A, domain 2 3mkhA02
2RFQA 1EGEA 3BNGA 4ZXVA 2REHA 3EONA 2D29A 3B96A 2RDZA 3X0XA 4L3XA 4L3YA 3GNCA 3D6BA 3HWCA 3D9GA 3SCEA 3GM6A 4Q1OA 5K3JA 5K3HA 3UBRA 2YYLA 2JBSA 1OAHA 2PG0A 3OWAA 2YYMA 3FO3A 4X28C 1W07A 2OT4A 3GQTA 1SIRA 3RKHA 2C12A 3D9FA 2YYGA 3MMOA 4G5EA 3BNFA 2JBRA 3D9DA 3NF4A 2IX5A 3MDDA 4XVXA 1FS8A 1QDBA 1UDYA 5K3IA 4L38A 4Q4UA 1T9GA 3LGQA 3PFDA 3M9VA 2EBAA 3MPIA 3SWOA 2OR0A 4WJYA 3TORA 4P13A 2YYJA 4DOYA 4HR3A 1IS2A 2Z1QA 2A1TA 3FCJA 3MKHA 4X28A 1SIQA 1FS9A 1EGCA 4NXLA 2YYKA 3D1IA 2ZO5A 4Q0TA 1BUCA 4IRNA 2R0NA 3P4TA 1JQIA 4O5MA 3MDEA 4Q5BA 3BNHA 3UU9A 3MXLA 4KCFA 3R7KA 3S7WA 2C0UA 4JEKA 4L1FA 4W9UA 1UKWA 1FS7A 3TTBA 4OO2A 3OIBA 4KTOA 4IV6A 3AFEA 4Q17A 2VR0A 1R2JA 4RM7A 3SF6A 2JBTA 3X0YA 3SXQA 1EGDA 1GU6A 4N5FA 2R0MA 2DDHA 4M9AA 3F29A 3AFFA 2WBIA 3EOMA 2IX6A 2E81A 1WS9A 2E80A 2DVLA 4Q5CA 2YYIA 3D9EA 2FONA 4L3ZA 2ZAFA 2VIGA 4ZYJA 4U83A 3MPJA 5K3GA 1RX0A 2UXWA 3II9A 3LG1A 2JIFA 3L1TA 2J7AA 3BNJA 1U8VA 2CX9A 3OWMA 2RF7A 1IVHA
chains in the Genus database with same CATH superfamily
2EBFX 2RFQA 1EGEA 3BNGA 4AI6A 3X29A 4ZXVA 2REHA 1SK6A 4FF2A 2OEXA 3EONA 1XFVA 2D29A 3B96A 2RDZA 2BU5A 2XS1A 3D2RA 3VKGA 1S26A 4FF4A 3C3LA 2Q8IA 5B5WA 3X0XA 1K90A 4G97A 2OEVA 1X8ZA 4L3XA 4H85A 4L3YA 3GNCA 3D6BA 3N0RA 4F0XA 3HWCA 4KSFA 2Q8FA 4FF3A 3D9GA 3Q22A 3SCEA 3GM6A 4Q1OA 5K3JA 5K3HA 2BU2A 2CJ4A 2QR4A 3UBRA 4MP2A 2YYLA 4DZYA 3KMLA 2JBSA 5M4KA 1OAHA 2PG0A 3OWAA 2PO4A 2YYMA 5M4PA 2CJ7A 1LVCA 3FO3A 3TZ0A 4X28C 4AKHA 2OJQA 4H81A 1W07A 2AO2A 1RJ4A 3CE2A 2OT4A 3GQTA 1SIRA 3RKHA 2C12A 5M4MA 3D9FA 2EBHX 4E02A 2FP2A 4E01A 2YYGA 1GJVA 3MMOA 2BU7A 2Q8GA 2R05A 5B6BA 4G5EA 3C46A 5J6AA 3BNFA 2JBRA 2BU6A 3D9DA 5GJVE 3NF4A 5B5VA 2AZEA 2IX5A 2HJNA 3MDDA 2FP1A 4XVXA 1FS8A 1QDBA 1UDYA 5K3IA 2ZDYA 4J1VA 4L38A 4Q4UA 1T9GA 2ZKJA 3PFDA 3LGQA 3M9VA 2EBAA 1XFWA 2XS8A 5J71A 5M4NA 3VKHA 3MPIA 2BU8A 3SWOA 2OR0A 1Y8NA 4WJYA 3TORA 2YGWA 3Q0AA 4P13A 2YYJA 4DOYA 2Q8HA 4HR3A 1IS2A 2Z1QA 2VF1A 2A1TA 3FCJA 3MKHA 4X28A 1SIQA 1FS9A 2EC5A 1EGCA 2CJ8A 4JIOA 4NXLA 2YYKA 3D1IA 2ZDXA 2ZO5A 4Q0TA 3VADA 5EZ3A 1BUCA 4IRNA 3TZ2A 4MP7A 2R0NA 2F6LA 3CRKA 3P4TA 1XFUA 1JQIA 4O5MA 3MDEA 1SC5A 4Q5BA 1R3BA 3BNHA 3UU9A 4LQQB 3MXLA 5BRKA 4KCFA 4KSAA 3R7KA 4JIZA 3S7WA 1RJ1A 4HKRA 1Y0VA 2C0UA 3TZ5A 4JEKA 4L1FA 1XFZA 1GKXA 5BRMA 4W9UA 4AKIA 1XFYA 2CJ5A 1UKWA 1FS7A 3TTBA 4OO2A 3OIBA 4AKGA 4KTOA 4IV6A 4LQSB 3AFEA 4KS9A 1XFXA 4FZ4A 2VR0A 4Q17A 1R2JA 1XG2B 4RM7A 3SF6A 2JBTA 3X0YA 1RP3A 3SXQA 2GBBA 1EGDA 1GU6A 4V26A 4N5FA 1GKZA 2R0MA 2DDHA 1X90A 1PK0A 4M9AA 5GJWE 3Q23A 4H7QA 3F29A 4MPCA 3AFFA 2WBIA 3TZ4A 2R03A 3EOMA 2IX6A 2CJ6A 4HKSA 2E81A 4MPNA 4E00A 2E0AA 3CRLA 3DJLA 1WS9A 2E80A 2DVLA 3C2PA 1Y8PA 4MPEA 2YYIA 4Q5CA 2LFWA 3D9EA 4P79A 2FONA 4L3ZA 1X91A 2ZAFA 3Q24A 1K8TA 2VIGA 4ZYJA 1K93A 4U83A 3MPJA 2XQRB 3U33A 5K3GA 2PNRA 1RX0A 2UXWA 3II9A 1Y8OA 2BTZA 2R02A 2JIFA 3L1TA 3LG1A 4FF1A 2J7AA 3BNJA 1U8VA 2CX9A 3OWMA 2RF7A 1PI1A 1JM6A 4QICA 1IVHA 4V25A
chains in the Genus database with same CATH topology
2RFQA 1EGEA 3BNGA 4ZXVA 2REHA 3EONA 2D29A 3B96A 2RDZA 3X0XA 4L3XA 4L3YA 3GNCA 3D6BA 3HWCA 3D9GA 3SCEA 3GM6A 4Q1OA 5K3JA 5K3HA 3UBRA 2YYLA 2JBSA 1OAHA 2PG0A 3OWAA 2YYMA 3FO3A 4X28C 1W07A 2OT4A 3GQTA 1SIRA 3RKHA 2C12A 3D9FA 2YYGA 3MMOA 4G5EA 3BNFA 2JBRA 3D9DA 3NF4A 2IX5A 3MDDA 4XVXA 1FS8A 1QDBA 1UDYA 5K3IA 4L38A 4Q4UA 1T9GA 3LGQA 3PFDA 3M9VA 2EBAA 3MPIA 3SWOA 2OR0A 4WJYA 3TORA 4P13A 2YYJA 4DOYA 4HR3A 1IS2A 2Z1QA 2A1TA 3FCJA 3MKHA 4X28A 1SIQA 1FS9A 1EGCA 4NXLA 2YYKA 3D1IA 2ZO5A 4Q0TA 1BUCA 4IRNA 2R0NA 3P4TA 1JQIA 4O5MA 3MDEA 4Q5BA 3BNHA 3UU9A 3MXLA 4KCFA 3R7KA 3S7WA 2C0UA 4JEKA 4L1FA 4W9UA 1UKWA 1FS7A 3TTBA 4OO2A 3OIBA 4KTOA 4IV6A 3AFEA 4Q17A 2VR0A 1R2JA 4RM7A 3SF6A 2JBTA 3X0YA 3SXQA 1EGDA 1GU6A 4N5FA 2R0MA 2DDHA 4M9AA 3F29A 3AFFA 2WBIA 3EOMA 2IX6A 2E81A 1WS9A 2E80A 2DVLA 4Q5CA 2YYIA 3D9EA 2FONA 4L3ZA 2ZAFA 2VIGA 4ZYJA 4U83A 3MPJA 5K3GA 1RX0A 2UXWA 3II9A 3LG1A 2JIFA 3L1TA 2J7AA 3BNJA 1U8VA 2CX9A 3OWMA 2RF7A 1IVHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2RFQ A;  1EGE A;  3BNG A;  4ZXV A;  2REH A;  3EON A;  2D29 A;  3B96 A;  2RDZ A;  3X0X A;  4L3X A;  4L3Y A;  3GNC A;  3D6B A;  3HWC A;  3D9G A;  3SCE A;  3GM6 A;  4Q1O A;  5K3J A;  5K3H A;  3UBR A;  2YYL A;  2JBS A;  1OAH A;  2PG0 A;  3OWA A;  2YYM A;  3FO3 A;  4X28 C;  1W07 A;  2OT4 A;  3GQT A;  1SIR A;  3RKH A;  2C12 A;  3D9F A;  2YYG A;  3MMO A;  4G5E A;  3BNF A;  2JBR A;  3D9D A;  3NF4 A;  2IX5 A;  3MDD A;  4XVX A;  1FS8 A;  1QDB A;  1UDY A;  5K3I A;  4L38 A;  4Q4U A;  1T9G A;  3LGQ A;  3PFD A;  3M9V A;  2EBA A;  3MPI A;  3SWO A;  2OR0 A;  4WJY A;  3TOR A;  4P13 A;  2YYJ A;  4DOY A;  4HR3 A;  1IS2 A;  2Z1Q A;  2A1T A;  3FCJ A;  3MKH A;  4X28 A;  1SIQ A;  1FS9 A;  1EGC A;  4NXL A;  2YYK A;  3D1I A;  2ZO5 A;  4Q0T A;  1BUC A;  4IRN A;  2R0N A;  3P4T A;  1JQI A;  4O5M A;  3MDE A;  4Q5B A;  3BNH A;  3UU9 A;  3MXL A;  4KCF A;  3R7K A;  3S7W A;  2C0U A;  4JEK A;  4L1F A;  4W9U A;  1UKW A;  1FS7 A;  3TTB A;  4OO2 A;  3OIB A;  4KTO A;  4IV6 A;  3AFE A;  4Q17 A;  2VR0 A;  1R2J A;  4RM7 A;  3SF6 A;  2JBT A;  3X0Y A;  3SXQ A;  1EGD A;  1GU6 A;  4N5F A;  2R0M A;  2DDH A;  4M9A A;  3F29 A;  3AFF A;  2WBI A;  3EOM A;  2IX6 A;  2E81 A;  1WS9 A;  2E80 A;  2DVL A;  4Q5C A;  2YYI A;  3D9E A;  2FON A;  4L3Z A;  2ZAF A;  2VIG A;  4ZYJ A;  4U83 A;  3MPJ A;  5K3G A;  1RX0 A;  2UXW A;  3II9 A;  3LG1 A;  2JIF A;  3L1T A;  2J7A A;  3BNJ A;  1U8V A;  2CX9 A;  3OWM A;  2RF7 A;  1IVH A; 
#chains in the Genus database with same CATH topology
 2EBF X;  2RFQ A;  1EGE A;  3BNG A;  4AI6 A;  3X29 A;  4ZXV A;  2REH A;  1SK6 A;  4FF2 A;  2OEX A;  3EON A;  1XFV A;  2D29 A;  3B96 A;  2RDZ A;  2BU5 A;  2XS1 A;  3D2R A;  3VKG A;  1S26 A;  4FF4 A;  3C3L A;  2Q8I A;  5B5W A;  3X0X A;  1K90 A;  4G97 A;  2OEV A;  1X8Z A;  4L3X A;  4H85 A;  4L3Y A;  3GNC A;  3D6B A;  3N0R A;  4F0X A;  3HWC A;  4KSF A;  2Q8F A;  4FF3 A;  3D9G A;  3Q22 A;  3SCE A;  3GM6 A;  4Q1O A;  5K3J A;  5K3H A;  2BU2 A;  2CJ4 A;  2QR4 A;  3UBR A;  4MP2 A;  2YYL A;  4DZY A;  3KML A;  2JBS A;  5M4K A;  1OAH A;  2PG0 A;  3OWA A;  2PO4 A;  2YYM A;  5M4P A;  2CJ7 A;  1LVC A;  3FO3 A;  3TZ0 A;  4X28 C;  4AKH A;  2OJQ A;  4H81 A;  1W07 A;  2AO2 A;  1RJ4 A;  3CE2 A;  2OT4 A;  3GQT A;  1SIR A;  3RKH A;  2C12 A;  5M4M A;  3D9F A;  2EBH X;  4E02 A;  2FP2 A;  4E01 A;  2YYG A;  1GJV A;  3MMO A;  2BU7 A;  2Q8G A;  2R05 A;  5B6B A;  4G5E A;  3C46 A;  5J6A A;  3BNF A;  2JBR A;  2BU6 A;  3D9D A;  5GJV E;  3NF4 A;  5B5V A;  2AZE A;  2IX5 A;  2HJN A;  3MDD A;  2FP1 A;  4XVX A;  1FS8 A;  1QDB A;  1UDY A;  5K3I A;  2ZDY A;  4J1V A;  4L38 A;  4Q4U A;  1T9G A;  2ZKJ A;  3PFD A;  3LGQ A;  3M9V A;  2EBA A;  1XFW A;  2XS8 A;  5J71 A;  5M4N A;  3VKH A;  3MPI A;  2BU8 A;  3SWO A;  2OR0 A;  1Y8N A;  4WJY A;  3TOR A;  2YGW A;  3Q0A A;  4P13 A;  2YYJ A;  4DOY A;  2Q8H A;  4HR3 A;  1IS2 A;  2Z1Q A;  2VF1 A;  2A1T A;  3FCJ A;  3MKH A;  4X28 A;  1SIQ A;  1FS9 A;  2EC5 A;  1EGC A;  2CJ8 A;  4JIO A;  4NXL A;  2YYK A;  3D1I A;  2ZDX A;  2ZO5 A;  4Q0T A;  3VAD A;  5EZ3 A;  1BUC A;  4IRN A;  3TZ2 A;  4MP7 A;  2R0N A;  2F6L A;  3CRK A;  3P4T A;  1XFU A;  1JQI A;  4O5M A;  3MDE A;  1SC5 A;  4Q5B A;  1R3B A;  3BNH A;  3UU9 A;  4LQQ B;  3MXL A;  5BRK A;  4KCF A;  4KSA A;  3R7K A;  4JIZ A;  3S7W A;  1RJ1 A;  4HKR A;  1Y0V A;  2C0U A;  3TZ5 A;  4JEK A;  4L1F A;  1XFZ A;  1GKX A;  5BRM A;  4W9U A;  4AKI A;  1XFY A;  2CJ5 A;  1UKW A;  1FS7 A;  3TTB A;  4OO2 A;  3OIB A;  4AKG A;  4KTO A;  4IV6 A;  4LQS B;  3AFE A;  4KS9 A;  1XFX A;  4FZ4 A;  2VR0 A;  4Q17 A;  1R2J A;  1XG2 B;  4RM7 A;  3SF6 A;  2JBT A;  3X0Y A;  1RP3 A;  3SXQ A;  2GBB A;  1EGD A;  1GU6 A;  4V26 A;  4N5F A;  1GKZ A;  2R0M A;  2DDH A;  1X90 A;  1PK0 A;  4M9A A;  5GJW E;  3Q23 A;  4H7Q A;  3F29 A;  4MPC A;  3AFF A;  2WBI A;  3TZ4 A;  2R03 A;  3EOM A;  2IX6 A;  2CJ6 A;  4HKS A;  2E81 A;  4MPN A;  4E00 A;  2E0A A;  3CRL A;  3DJL A;  1WS9 A;  2E80 A;  2DVL A;  3C2P A;  1Y8P A;  4MPE A;  2YYI A;  4Q5C A;  2LFW A;  3D9E A;  4P79 A;  2FON A;  4L3Z A;  1X91 A;  2ZAF A;  3Q24 A;  1K8T A;  2VIG A;  4ZYJ A;  1K93 A;  4U83 A;  3MPJ A;  2XQR B;  3U33 A;  5K3G A;  2PNR A;  1RX0 A;  2UXW A;  3II9 A;  1Y8O A;  2BTZ A;  2R02 A;  2JIF A;  3L1T A;  3LG1 A;  4FF1 A;  2J7A A;  3BNJ A;  1U8V A;  2CX9 A;  3OWM A;  2RF7 A;  1PI1 A;  1JM6 A;  4QIC A;  1IVH A;  4V25 A; 
#chains in the Genus database with same CATH homology
 2RFQ A;  1EGE A;  3BNG A;  4ZXV A;  2REH A;  3EON A;  2D29 A;  3B96 A;  2RDZ A;  3X0X A;  4L3X A;  4L3Y A;  3GNC A;  3D6B A;  3HWC A;  3D9G A;  3SCE A;  3GM6 A;  4Q1O A;  5K3J A;  5K3H A;  3UBR A;  2YYL A;  2JBS A;  1OAH A;  2PG0 A;  3OWA A;  2YYM A;  3FO3 A;  4X28 C;  1W07 A;  2OT4 A;  3GQT A;  1SIR A;  3RKH A;  2C12 A;  3D9F A;  2YYG A;  3MMO A;  4G5E A;  3BNF A;  2JBR A;  3D9D A;  3NF4 A;  2IX5 A;  3MDD A;  4XVX A;  1FS8 A;  1QDB A;  1UDY A;  5K3I A;  4L38 A;  4Q4U A;  1T9G A;  3LGQ A;  3PFD A;  3M9V A;  2EBA A;  3MPI A;  3SWO A;  2OR0 A;  4WJY A;  3TOR A;  4P13 A;  2YYJ A;  4DOY A;  4HR3 A;  1IS2 A;  2Z1Q A;  2A1T A;  3FCJ A;  3MKH A;  4X28 A;  1SIQ A;  1FS9 A;  1EGC A;  4NXL A;  2YYK A;  3D1I A;  2ZO5 A;  4Q0T A;  1BUC A;  4IRN A;  2R0N A;  3P4T A;  1JQI A;  4O5M A;  3MDE A;  4Q5B A;  3BNH A;  3UU9 A;  3MXL A;  4KCF A;  3R7K A;  3S7W A;  2C0U A;  4JEK A;  4L1F A;  4W9U A;  1UKW A;  1FS7 A;  3TTB A;  4OO2 A;  3OIB A;  4KTO A;  4IV6 A;  3AFE A;  4Q17 A;  2VR0 A;  1R2J A;  4RM7 A;  3SF6 A;  2JBT A;  3X0Y A;  3SXQ A;  1EGD A;  1GU6 A;  4N5F A;  2R0M A;  2DDH A;  4M9A A;  3F29 A;  3AFF A;  2WBI A;  3EOM A;  2IX6 A;  2E81 A;  1WS9 A;  2E80 A;  2DVL A;  4Q5C A;  2YYI A;  3D9E A;  2FON A;  4L3Z A;  2ZAF A;  2VIG A;  4ZYJ A;  4U83 A;  3MPJ A;  5K3G A;  1RX0 A;  2UXW A;  3II9 A;  3LG1 A;  2JIF A;  3L1T A;  2J7A A;  3BNJ A;  1U8V A;  2CX9 A;  3OWM A;  2RF7 A;  1IVH A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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