4N5FA

Crystal structure of a putative acyl-coa dehydrogenase with bound fadh2 from burkholderia cenocepacia j2315
Total Genus 138
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
138
sequence length
378
structure length
378
Chain Sequence
HMDELYTEDQRMIRDAARAFATEMLAPNAAQWDHDAHLPDAIVAQLGELGLLGMIVPQELGGSYTDYVAYALAMEEVAAGDAACATMMSVHNSVGCGPILGFGTPAQKDRWLADMAAGRVIGAFCLTEPHAGSEANNLRTRAELRDGQWVLNGAKQFVTNGQRAGVAIVFAMTDPEAGKRGISAFLVPTDTPGFIVGKPEKKMGIRASDTCPITFENCAIPEDNLLGNRGEGLKIALSNLEGGRIGIAAQALGIARAAFDKARRYAGERVQFGKPIAEHQAIQQKLADMAVQINAARLLVHHAAKLRTAGLPCLSEASQAKLFASEMAERVCSDAIQIHGGYGYLVDYEVERHYRDARITQIYEGTSEVQRMVIARQL
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords Putative acyl-CoA dehydrogenase
publication title Crystal Structure of a Putative acyl-CoA dehydrogenase with bound FADH2 from Burkholderia cenocepacia J2315
rcsb
source organism Burkholderia cenocepacia
total genus 138
structure length 378
sequence length 378
chains with identical sequence B
ec nomenclature ec 1.3.99.-:
pdb deposition date 2013-10-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00441 Acyl-CoA_dh_1 Acyl-CoA dehydrogenase, C-terminal domain
A PF02770 Acyl-CoA_dh_M Acyl-CoA dehydrogenase, middle domain
A PF02771 Acyl-CoA_dh_N Acyl-CoA dehydrogenase, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.540.10 Mainly Alpha Orthogonal Bundle Butyryl-Coa Dehydrogenase, subunit A; domain 1 Acyl-CoA dehydrogenase/oxidase, N-terminal domain 4n5fA01
1.20.140.10 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A; domain 3 Butyryl-CoA Dehydrogenase, subunit A, domain 3 4n5fA03
2.40.110.10 Mainly Beta Beta Barrel Butyryl-CoA Dehydrogenase, subunit A; domain 2 Butyryl-CoA Dehydrogenase, subunit A, domain 2 4n5fA02
2UXWA 3MMOA 3X0YA 2C12A 1UKWA 3MKHA 1R2JA 1BUCA 4NXLA 4O5MA 2YYMA 2VR0A 3NF4A 2R0NA 1EGEA 3D9FA 3D9DA 3LGQA 4L1FA 4M9AA 3BNHA 1EGDA 3BNGA 3TTBA 4U83A 1IVHA 1FS8A 4Q1OA 3BNFA 3D9GA 3RKHA 3EOMA 2RFQA 1U8VA 3EONA 2E81A 2J7AA 2JBRA 2JBTA 2ZO5A 2D29A 2OT4A 2REHA 4X28A 2DDHA 2A1TA 3UBRA 2R0MA 2PG0A 2RDZA 2JBSA 3II9A 3SWOA 4Q5CA 4KCFA 2FONA 2IX5A 3MDEA 2YYJA 1T9GA 4Q4UA 5K3JA 3MPIA 3TORA 3BNJA 1W07A 4Q0TA 2DVLA 3HWCA 3R7KA 1OAHA 2YYLA 4L38A 4L3XA 4W9UA 1FS7A 4JEKA 3F29A 3L1TA 3SF6A 3SXQA 3MXLA 4Q5BA 2YYGA 2CX9A 5K3IA 3D1IA 4ZYJA 2YYKA 3GM6A 4DOYA 3AFEA 1EGCA 2Z1QA 2JIFA 3MDDA 4KTOA 1GU6A 1WS9A 1IS2A 3P4TA 4L3ZA 4OO2A 2C0UA 3LG1A 4Q17A 3GQTA 3B96A 1UDYA 3S7WA 3D9EA 3FO3A 3FCJA 1QDBA 2WBIA 4IV6A 3X0XA 1SIRA 2RF7A 1JQIA 3AFFA 3GNCA 4RM7A 4HR3A 4ZXVA 3OWAA 3MPJA 2OR0A 3OIBA 4P13A 5K3GA 3SCEA 1SIQA 4WJYA 2YYIA 4IRNA 2IX6A 3M9VA 2ZAFA 3OWMA 1RX0A 4N5FA 4X28C 1FS9A 3PFDA 5K3HA 3D6BA 2VIGA 2EBAA 3UU9A 4XVXA 2E80A 4G5EA 4L3YA
chains in the Genus database with same CATH superfamily
2UXWA 3MMOA 1GKZA 3X0YA 4P79A 2Q8FA 2C12A 1GJVA 3TZ5A 1UKWA 3MKHA 4JIZA 1Y8PA 1PK0A 1R2JA 1BUCA 4NXLA 4O5MA 2XS8A 2YYMA 2VR0A 3NF4A 2R0NA 1EGEA 4QICA 3D9FA 3D9DA 2LFWA 3LGQA 4L1FA 2FP1A 4M9AA 2YGWA 1EGDA 3BNHA 2VF1A 3BNGA 3TTBA 4H7QA 4U83A 1IVHA 2AO2A 1PI1A 4F0XA 3C3LA 2F6LA 1FS8A 4FZ4A 2CJ7A 2BU2A 2BTZA 4Q1OA 3BNFA 3D9GA 1K90A 3RKHA 3EOMA 5B6BA 2RFQA 1U8VA 4HKSA 3TZ4A 2EBFX 3X29A 1Y0VA 4KS9A 3EONA 2E81A 2J7AA 4FF3A 2PO4A 2CJ5A 5GJWE 2JBRA 2Q8GA 2JBTA 2EC5A 2EBHX 2R03A 2D29A 2ZO5A 4E00A 5BRKA 2OT4A 2REHA 4X28A 2Q8IA 2DDHA 2A1TA 1RJ4A 4AKHA 5M4KA 3UBRA 3CRLA 2R0MA 2FP2A 5EZ3A 2PG0A 2RDZA 5B5WA 2JBSA 3II9A 3SWOA 4Q5CA 5BRMA 2BU5A 4KCFA 2PNRA 3U33A 2FONA 4AKIA 1RJ1A 4E02A 2IX5A 3MDEA 3CRKA 2YYJA 1T9GA 2AZEA 3TZ0A 3Q22A 2XS1A 3VKGA 4Q4UA 5K3JA 1Y8NA 2BU6A 3MPIA 1X90A 3TORA 3BNJA 1W07A 4FF1A 4AKGA 1GKXA 4Q0TA 2DVLA 2R05A 3HWCA 3R7KA 1XFZA 1OAHA 2ZKJA 1SK6A 2YYLA 4MPNA 4L38A 4L3XA 2Q8HA 4MP7A 4MPEA 4W9UA 1FS7A 2CJ6A 4JEKA 3F29A 2GBBA 1Y8OA 3Q23A 3L1TA 3SF6A 2ZDYA 3SXQA 3MXLA 4H85A 2YYGA 4H81A 2CX9A 5K3IA 4Q5BA 3Q24A 3D1IA 4FF2A 4ZYJA 2YYKA 5J71A 3GM6A 1XFUA 4DOYA 3AFEA 3D2RA 1K93A 1EGCA 4LQQB 5J6AA 5M4NA 2Z1QA 3KMLA 2JIFA 4MP2A 3MDDA 2ZDXA 3DJLA 4KTOA 1GU6A 3TZ2A 1XFVA 1WS9A 1IS2A 3P4TA 4KSAA 4LQSB 4L3ZA 4OO2A 2C0UA 2OEXA 3LG1A 4Q17A 3GQTA 3B96A 2OJQA 1XFXA 4AI6A 2CJ8A 3CE2A 1UDYA 1XG2B 3S7WA 3D9EA 4HKRA 4DZYA 2HJNA 3FCJA 1QDBA 3FO3A 4G97A 2QR4A 4E01A 1JM6A 2WBIA 4IV6A 1SC5A 3X0XA 5M4PA 1SIRA 2RF7A 5M4MA 2OEVA 3C2PA 4KSFA 5GJVE 1JQIA 1LVCA 1X8ZA 1K8TA 3C46A 3AFFA 3GNCA 4RM7A 1R3BA 4HR3A 4ZXVA 2BU7A 4V25A 1S26A 4J1VA 4MPCA 4FF4A 3VKHA 1X91A 3OWAA 3MPJA 2OR0A 3OIBA 4P13A 5K3GA 2E0AA 3SCEA 1SIQA 2BU8A 2YYIA 4WJYA 3Q0AA 4IRNA 4V26A 1XFWA 2IX6A 3M9VA 2ZAFA 4JIOA 3OWMA 3VADA 1RX0A 4N5FA 2XQRB 4X28C 1XFYA 2CJ4A 3N0RA 1FS9A 3PFDA 5K3HA 1RP3A 3D6BA 2VIGA 2EBAA 2R02A 5B5VA 3UU9A 4XVXA 2E80A 4G5EA 4L3YA
chains in the Genus database with same CATH topology
2UXWA 3MMOA 3X0YA 2C12A 1UKWA 3MKHA 1R2JA 1BUCA 4NXLA 4O5MA 2YYMA 2VR0A 3NF4A 2R0NA 1EGEA 3D9FA 3D9DA 3LGQA 4L1FA 4M9AA 3BNHA 1EGDA 3BNGA 3TTBA 4U83A 1IVHA 1FS8A 4Q1OA 3BNFA 3D9GA 3RKHA 3EOMA 2RFQA 1U8VA 3EONA 2E81A 2J7AA 2JBRA 2JBTA 2ZO5A 2D29A 2OT4A 2REHA 4X28A 2DDHA 2A1TA 3UBRA 2R0MA 2PG0A 2RDZA 2JBSA 3II9A 3SWOA 4Q5CA 4KCFA 2FONA 2IX5A 3MDEA 2YYJA 1T9GA 4Q4UA 5K3JA 3MPIA 3TORA 3BNJA 1W07A 4Q0TA 2DVLA 3HWCA 3R7KA 1OAHA 2YYLA 4L38A 4L3XA 4W9UA 1FS7A 4JEKA 3F29A 3L1TA 3SF6A 3SXQA 3MXLA 4Q5BA 2YYGA 2CX9A 5K3IA 3D1IA 4ZYJA 2YYKA 3GM6A 4DOYA 3AFEA 1EGCA 2Z1QA 2JIFA 3MDDA 4KTOA 1GU6A 1WS9A 1IS2A 3P4TA 4L3ZA 4OO2A 2C0UA 3LG1A 4Q17A 3GQTA 3B96A 1UDYA 3S7WA 3D9EA 3FO3A 3FCJA 1QDBA 2WBIA 4IV6A 3X0XA 1SIRA 2RF7A 1JQIA 3AFFA 3GNCA 4RM7A 4HR3A 4ZXVA 3OWAA 3MPJA 2OR0A 3OIBA 4P13A 5K3GA 3SCEA 1SIQA 4WJYA 2YYIA 4IRNA 2IX6A 3M9VA 2ZAFA 3OWMA 1RX0A 4N5FA 4X28C 1FS9A 3PFDA 5K3HA 3D6BA 2VIGA 2EBAA 3UU9A 4XVXA 2E80A 4G5EA 4L3YA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2UXW A;  3MMO A;  3X0Y A;  2C12 A;  1UKW A;  3MKH A;  1R2J A;  1BUC A;  4NXL A;  4O5M A;  2YYM A;  2VR0 A;  3NF4 A;  2R0N A;  1EGE A;  3D9F A;  3D9D A;  3LGQ A;  4L1F A;  4M9A A;  3BNH A;  1EGD A;  3BNG A;  3TTB A;  4U83 A;  1IVH A;  1FS8 A;  4Q1O A;  3BNF A;  3D9G A;  3RKH A;  3EOM A;  2RFQ A;  1U8V A;  3EON A;  2E81 A;  2J7A A;  2JBR A;  2JBT A;  2ZO5 A;  2D29 A;  2OT4 A;  2REH A;  4X28 A;  2DDH A;  2A1T A;  3UBR A;  2R0M A;  2PG0 A;  2RDZ A;  2JBS A;  3II9 A;  3SWO A;  4Q5C A;  4KCF A;  2FON A;  2IX5 A;  3MDE A;  2YYJ A;  1T9G A;  4Q4U A;  5K3J A;  3MPI A;  3TOR A;  3BNJ A;  1W07 A;  4Q0T A;  2DVL A;  3HWC A;  3R7K A;  1OAH A;  2YYL A;  4L38 A;  4L3X A;  4W9U A;  1FS7 A;  4JEK A;  3F29 A;  3L1T A;  3SF6 A;  3SXQ A;  3MXL A;  4Q5B A;  2YYG A;  2CX9 A;  5K3I A;  3D1I A;  4ZYJ A;  2YYK A;  3GM6 A;  4DOY A;  3AFE A;  1EGC A;  2Z1Q A;  2JIF A;  3MDD A;  4KTO A;  1GU6 A;  1WS9 A;  1IS2 A;  3P4T A;  4L3Z A;  4OO2 A;  2C0U A;  3LG1 A;  4Q17 A;  3GQT A;  3B96 A;  1UDY A;  3S7W A;  3D9E A;  3FO3 A;  3FCJ A;  1QDB A;  2WBI A;  4IV6 A;  3X0X A;  1SIR A;  2RF7 A;  1JQI A;  3AFF A;  3GNC A;  4RM7 A;  4HR3 A;  4ZXV A;  3OWA A;  3MPJ A;  2OR0 A;  3OIB A;  4P13 A;  5K3G A;  3SCE A;  1SIQ A;  4WJY A;  2YYI A;  4IRN A;  2IX6 A;  3M9V A;  2ZAF A;  3OWM A;  1RX0 A;  4N5F A;  4X28 C;  1FS9 A;  3PFD A;  5K3H A;  3D6B A;  2VIG A;  2EBA A;  3UU9 A;  4XVX A;  2E80 A;  4G5E A;  4L3Y A; 
#chains in the Genus database with same CATH topology
 2UXW A;  3MMO A;  1GKZ A;  3X0Y A;  4P79 A;  2Q8F A;  2C12 A;  1GJV A;  3TZ5 A;  1UKW A;  3MKH A;  4JIZ A;  1Y8P A;  1PK0 A;  1R2J A;  1BUC A;  4NXL A;  4O5M A;  2XS8 A;  2YYM A;  2VR0 A;  3NF4 A;  2R0N A;  1EGE A;  4QIC A;  3D9F A;  3D9D A;  2LFW A;  3LGQ A;  4L1F A;  2FP1 A;  4M9A A;  2YGW A;  1EGD A;  3BNH A;  2VF1 A;  3BNG A;  3TTB A;  4H7Q A;  4U83 A;  1IVH A;  2AO2 A;  1PI1 A;  4F0X A;  3C3L A;  2F6L A;  1FS8 A;  4FZ4 A;  2CJ7 A;  2BU2 A;  2BTZ A;  4Q1O A;  3BNF A;  3D9G A;  1K90 A;  3RKH A;  3EOM A;  5B6B A;  2RFQ A;  1U8V A;  4HKS A;  3TZ4 A;  2EBF X;  3X29 A;  1Y0V A;  4KS9 A;  3EON A;  2E81 A;  2J7A A;  4FF3 A;  2PO4 A;  2CJ5 A;  5GJW E;  2JBR A;  2Q8G A;  2JBT A;  2EC5 A;  2EBH X;  2R03 A;  2D29 A;  2ZO5 A;  4E00 A;  5BRK A;  2OT4 A;  2REH A;  4X28 A;  2Q8I A;  2DDH A;  2A1T A;  1RJ4 A;  4AKH A;  5M4K A;  3UBR A;  3CRL A;  2R0M A;  2FP2 A;  5EZ3 A;  2PG0 A;  2RDZ A;  5B5W A;  2JBS A;  3II9 A;  3SWO A;  4Q5C A;  5BRM A;  2BU5 A;  4KCF A;  2PNR A;  3U33 A;  2FON A;  4AKI A;  1RJ1 A;  4E02 A;  2IX5 A;  3MDE A;  3CRK A;  2YYJ A;  1T9G A;  2AZE A;  3TZ0 A;  3Q22 A;  2XS1 A;  3VKG A;  4Q4U A;  5K3J A;  1Y8N A;  2BU6 A;  3MPI A;  1X90 A;  3TOR A;  3BNJ A;  1W07 A;  4FF1 A;  4AKG A;  1GKX A;  4Q0T A;  2DVL A;  2R05 A;  3HWC A;  3R7K A;  1XFZ A;  1OAH A;  2ZKJ A;  1SK6 A;  2YYL A;  4MPN A;  4L38 A;  4L3X A;  2Q8H A;  4MP7 A;  4MPE A;  4W9U A;  1FS7 A;  2CJ6 A;  4JEK A;  3F29 A;  2GBB A;  1Y8O A;  3Q23 A;  3L1T A;  3SF6 A;  2ZDY A;  3SXQ A;  3MXL A;  4H85 A;  2YYG A;  4H81 A;  2CX9 A;  5K3I A;  4Q5B A;  3Q24 A;  3D1I A;  4FF2 A;  4ZYJ A;  2YYK A;  5J71 A;  3GM6 A;  1XFU A;  4DOY A;  3AFE A;  3D2R A;  1K93 A;  1EGC A;  4LQQ B;  5J6A A;  5M4N A;  2Z1Q A;  3KML A;  2JIF A;  4MP2 A;  3MDD A;  2ZDX A;  3DJL A;  4KTO A;  1GU6 A;  3TZ2 A;  1XFV A;  1WS9 A;  1IS2 A;  3P4T A;  4KSA A;  4LQS B;  4L3Z A;  4OO2 A;  2C0U A;  2OEX A;  3LG1 A;  4Q17 A;  3GQT A;  3B96 A;  2OJQ A;  1XFX A;  4AI6 A;  2CJ8 A;  3CE2 A;  1UDY A;  1XG2 B;  3S7W A;  3D9E A;  4HKR A;  4DZY A;  2HJN A;  3FCJ A;  1QDB A;  3FO3 A;  4G97 A;  2QR4 A;  4E01 A;  1JM6 A;  2WBI A;  4IV6 A;  1SC5 A;  3X0X A;  5M4P A;  1SIR A;  2RF7 A;  5M4M A;  2OEV A;  3C2P A;  4KSF A;  5GJV E;  1JQI A;  1LVC A;  1X8Z A;  1K8T A;  3C46 A;  3AFF A;  3GNC A;  4RM7 A;  1R3B A;  4HR3 A;  4ZXV A;  2BU7 A;  4V25 A;  1S26 A;  4J1V A;  4MPC A;  4FF4 A;  3VKH A;  1X91 A;  3OWA A;  3MPJ A;  2OR0 A;  3OIB A;  4P13 A;  5K3G A;  2E0A A;  3SCE A;  1SIQ A;  2BU8 A;  2YYI A;  4WJY A;  3Q0A A;  4IRN A;  4V26 A;  1XFW A;  2IX6 A;  3M9V A;  2ZAF A;  4JIO A;  3OWM A;  3VAD A;  1RX0 A;  4N5F A;  2XQR B;  4X28 C;  1XFY A;  2CJ4 A;  3N0R A;  1FS9 A;  3PFD A;  5K3H A;  1RP3 A;  3D6B A;  2VIG A;  2EBA A;  2R02 A;  5B5V A;  3UU9 A;  4XVX A;  2E80 A;  4G5E A;  4L3Y A; 
#chains in the Genus database with same CATH homology
 2UXW A;  3MMO A;  3X0Y A;  2C12 A;  1UKW A;  3MKH A;  1R2J A;  1BUC A;  4NXL A;  4O5M A;  2YYM A;  2VR0 A;  3NF4 A;  2R0N A;  1EGE A;  3D9F A;  3D9D A;  3LGQ A;  4L1F A;  4M9A A;  3BNH A;  1EGD A;  3BNG A;  3TTB A;  4U83 A;  1IVH A;  1FS8 A;  4Q1O A;  3BNF A;  3D9G A;  3RKH A;  3EOM A;  2RFQ A;  1U8V A;  3EON A;  2E81 A;  2J7A A;  2JBR A;  2JBT A;  2ZO5 A;  2D29 A;  2OT4 A;  2REH A;  4X28 A;  2DDH A;  2A1T A;  3UBR A;  2R0M A;  2PG0 A;  2RDZ A;  2JBS A;  3II9 A;  3SWO A;  4Q5C A;  4KCF A;  2FON A;  2IX5 A;  3MDE A;  2YYJ A;  1T9G A;  4Q4U A;  5K3J A;  3MPI A;  3TOR A;  3BNJ A;  1W07 A;  4Q0T A;  2DVL A;  3HWC A;  3R7K A;  1OAH A;  2YYL A;  4L38 A;  4L3X A;  4W9U A;  1FS7 A;  4JEK A;  3F29 A;  3L1T A;  3SF6 A;  3SXQ A;  3MXL A;  4Q5B A;  2YYG A;  2CX9 A;  5K3I A;  3D1I A;  4ZYJ A;  2YYK A;  3GM6 A;  4DOY A;  3AFE A;  1EGC A;  2Z1Q A;  2JIF A;  3MDD A;  4KTO A;  1GU6 A;  1WS9 A;  1IS2 A;  3P4T A;  4L3Z A;  4OO2 A;  2C0U A;  3LG1 A;  4Q17 A;  3GQT A;  3B96 A;  1UDY A;  3S7W A;  3D9E A;  3FO3 A;  3FCJ A;  1QDB A;  2WBI A;  4IV6 A;  3X0X A;  1SIR A;  2RF7 A;  1JQI A;  3AFF A;  3GNC A;  4RM7 A;  4HR3 A;  4ZXV A;  3OWA A;  3MPJ A;  2OR0 A;  3OIB A;  4P13 A;  5K3G A;  3SCE A;  1SIQ A;  4WJY A;  2YYI A;  4IRN A;  2IX6 A;  3M9V A;  2ZAF A;  3OWM A;  1RX0 A;  4N5F A;  4X28 C;  1FS9 A;  3PFD A;  5K3H A;  3D6B A;  2VIG A;  2EBA A;  3UU9 A;  4XVX A;  2E80 A;  4G5E A;  4L3Y A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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