4N5FA

Crystal structure of a putative acyl-coa dehydrogenase with bound fadh2 from burkholderia cenocepacia j2315
Total Genus 138
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
138
sequence length
378
structure length
378
Chain Sequence
HMDELYTEDQRMIRDAARAFATEMLAPNAAQWDHDAHLPDAIVAQLGELGLLGMIVPQELGGSYTDYVAYALAMEEVAAGDAACATMMSVHNSVGCGPILGFGTPAQKDRWLADMAAGRVIGAFCLTEPHAGSEANNLRTRAELRDGQWVLNGAKQFVTNGQRAGVAIVFAMTDPEAGKRGISAFLVPTDTPGFIVGKPEKKMGIRASDTCPITFENCAIPEDNLLGNRGEGLKIALSNLEGGRIGIAAQALGIARAAFDKARRYAGERVQFGKPIAEHQAIQQKLADMAVQINAARLLVHHAAKLRTAGLPCLSEASQAKLFASEMAERVCSDAIQIHGGYGYLVDYEVERHYRDARITQIYEGTSEVQRMVIARQL
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Putative acyl-CoA dehydrogenase
publication title Crystal Structure of a Putative acyl-CoA dehydrogenase with bound FADH2 from Burkholderia cenocepacia J2315
rcsb
source organism Burkholderia cenocepacia
molecule tags Oxidoreductase
total genus 138
structure length 378
sequence length 378
chains with identical sequence B
ec nomenclature ec 1.3.99.-:
pdb deposition date 2013-10-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00441 Acyl-CoA_dh_1 Acyl-CoA dehydrogenase, C-terminal domain
A PF02770 Acyl-CoA_dh_M Acyl-CoA dehydrogenase, middle domain
A PF02771 Acyl-CoA_dh_N Acyl-CoA dehydrogenase, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.540.10 Mainly Alpha Orthogonal Bundle Butyryl-Coa Dehydrogenase, subunit A; domain 1 Acyl-CoA dehydrogenase/oxidase, N-terminal domain 4n5fA01
1.20.140.10 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A; domain 3 Butyryl-CoA Dehydrogenase, subunit A, domain 3 4n5fA03
2.40.110.10 Mainly Beta Beta Barrel Butyryl-CoA Dehydrogenase, subunit A; domain 2 Butyryl-CoA Dehydrogenase, subunit A, domain 2 4n5fA02
1W07A 3AFFA 1U8VA 2C12A 1EGDA 4X28C 1OAHA 4ZYJA 2UXWA 1UDYA 2JBRA 2YYJA 3FCJA 2ZO5A 3D9DA 2VIGA 2YYGA 3SCEA 3LGQA 4Q17A 3MDEA 3D9EA 4M9AA 4Q0TA 2A1TA 4Q5BA 2FONA 3BNJA 3D6BA 3MPJA 3MXLA 1FS9A 2E80A 3M9VA 2WBIA 3NF4A 3TORA 3X0XA 4Q4UA 2IX6A 2EBAA 3GQTA 4O5MA 4G5EA 3II9A 1R2JA 4P13A 1FS8A 4L1FA 4KCFA 3F29A 2JBTA 4X28A 4ZXVA 3TTBA 4DOYA 4L38A 1SIQA 3S7WA 3HWCA 1QDBA 2DDHA 2RFQA 3D9FA 1BUCA 3GNCA 3UBRA 5K3HA 4Q1OA 2OT4A 1UKWA 5K3GA 1IS2A 3BNFA 4N5FA 3OIBA 4IRNA 5K3JA 3MMOA 3SF6A 2VR0A 1IVHA 2REHA 3B96A 4W9UA 3L1TA 2PG0A 2JBSA 4Q5CA 2CX9A 2IX5A 2YYMA 2RF7A 4WJYA 3PFDA 4OO2A 3P4TA 2YYLA 2DVLA 3BNGA 1EGEA 3SWOA 2R0MA 1RX0A 3MPIA 4KTOA 1FS7A 4XVXA 2J7AA 2OR0A 4RM7A 2C0UA 2E81A 3SXQA 1T9GA 1WS9A 4L3YA 3D9GA 3D1IA 3X0YA 2D29A 2R0NA 2ZAFA 4HR3A 3EOMA 2RDZA 3MDDA 1JQIA 3OWMA 3EONA 3MKHA 4U83A 1SIRA 2YYKA 2YYIA 2JIFA 1GU6A 3R7KA 3OWAA 3LG1A 5K3IA 3RKHA 4L3ZA 3GM6A 4L3XA 4IV6A 3BNHA 4NXLA 4JEKA 3AFEA 2Z1QA 3FO3A 3UU9A 1EGCA
chains in the Genus database with same CATH superfamily
1W07A 1K8TA 3AFFA 3N0RA 1U8VA 2C12A 1EGDA 4X28C 4MP7A 1OAHA 2ZKJA 1GKZA 4ZYJA 2UXWA 5B5WA 1UDYA 1Y8NA 2JBRA 2AZEA 1PI1A 2E0AA 2LFWA 2YYJA 4AKGA 2VF1A 3FCJA 4E01A 2ZO5A 3D9DA 2VIGA 1X91A 1LVCA 2YYGA 3SCEA 3LGQA 4Q17A 3MDEA 4G97A 3D9EA 1S26A 4M9AA 4Q0TA 2BU8A 2EBFX 3VKHA 2A1TA 4Q5BA 2FONA 5J71A 1K90A 3BNJA 3D6BA 4FZ4A 1XFYA 3MPJA 3MXLA 1FS9A 2E80A 3D2RA 3M9VA 5J6AA 3C3LA 2WBIA 2CJ6A 2PNRA 2R03A 4KSAA 3CE2A 2BU2A 3NF4A 4F0XA 2HJNA 3TORA 3X0XA 1GJVA 1SK6A 2IX6A 2EBAA 3GQTA 4O5MA 1RP3A 2EBHX 4G5EA 3II9A 1R2JA 4P13A 1FS8A 1JM6A 4H85A 4L1FA 4P79A 2Q8HA 4KCFA 4H7QA 2OEVA 2JBTA 3F29A 4FF1A 2FP2A 1RJ4A 4X28A 2FP1A 4ZXVA 2YGWA 4DOYA 1Y8OA 1SIQA 1XFZA 4L38A 3TTBA 3TZ2A 3S7WA 2XS1A 3HWCA 4E00A 5B6BA 2CJ4A 1QDBA 2DDHA 2RFQA 3D9FA 1BUCA 3GNCA 4E02A 3C46A 4Q4UA 3UBRA 4V26A 4DZYA 4H81A 1Y0VA 5K3HA 4Q1OA 2OT4A 2PO4A 1UKWA 5K3GA 3X29A 2BU7A 2GBBA 4LQQB 4AI6A 2F6LA 1IS2A 3BNFA 2OJQA 5B5VA 3Q24A 4N5FA 3OIBA 2Q8IA 4IRNA 5K3JA 2ZDXA 3MMOA 3SF6A 4JIOA 4FF4A 4MPCA 4HKRA 2VR0A 1IVHA 2REHA 4QICA 3B96A 4W9UA 3L1TA 2PG0A 2BTZA 3C2PA 1R3BA 1Y8PA 3CRKA 2JBSA 5GJVE 3TZ4A 2AO2A 2ZDYA 2R05A 2CX9A 2IX5A 2XS8A 2YYMA 4Q5CA 1K93A 2RF7A 1GKXA 4WJYA 3PFDA 2BU6A 5M4PA 4OO2A 3P4TA 2YYLA 2DVLA 3BNGA 1EGEA 3SWOA 1RJ1A 4JIZA 3CRLA 5EZ3A 2R0MA 1XFUA 2BU5A 1RX0A 4HKSA 4V25A 2Q8FA 3MPIA 4KTOA 4FF2A 4LQSB 4AKIA 4KS9A 1FS7A 4XVXA 2J7AA 2OR0A 4RM7A 2C0UA 2E81A 3SXQA 1PK0A 1T9GA 1WS9A 4FF3A 4L3YA 3VADA 3TZ0A 1XFVA 2OEXA 1X90A 3Q23A 3U33A 3D9GA 3D1IA 3X0YA 3Q22A 2QR4A 2EC5A 5M4KA 5M4MA 2D29A 2R0NA 2ZAFA 4HR3A 3EOMA 2RDZA 3MDDA 1JQIA 3OWMA 3EONA 3MKHA 4U83A 4KSFA 1SIRA 4MP2A 2YYKA 2YYIA 2JIFA 2CJ5A 1GU6A 3R7KA 5BRKA 3VKGA 1XG2B 3OWAA 4J1VA 4MPNA 3LG1A 5K3IA 4AKHA 3RKHA 4L3ZA 3GM6A 4L3XA 4IV6A 1X8ZA 3BNHA 4NXLA 1XFWA 5GJWE 4JEKA 3AFEA 2CJ7A 2Z1QA 5BRMA 3Q0AA 4MPEA 3DJLA 5M4NA 3KMLA 2Q8GA 1XFXA 1SC5A 3FO3A 3UU9A 2R02A 2XQRB 2CJ8A 1EGCA 3TZ5A
chains in the Genus database with same CATH topology
1W07A 3AFFA 1U8VA 2C12A 1EGDA 4X28C 1OAHA 4ZYJA 2UXWA 1UDYA 2JBRA 2YYJA 3FCJA 2ZO5A 3D9DA 2VIGA 2YYGA 3SCEA 3LGQA 4Q17A 3MDEA 3D9EA 4M9AA 4Q0TA 2A1TA 4Q5BA 2FONA 3BNJA 3D6BA 3MPJA 3MXLA 1FS9A 2E80A 3M9VA 2WBIA 3NF4A 3TORA 3X0XA 4Q4UA 2IX6A 2EBAA 3GQTA 4O5MA 4G5EA 3II9A 1R2JA 4P13A 1FS8A 4L1FA 4KCFA 3F29A 2JBTA 4X28A 4ZXVA 3TTBA 4DOYA 4L38A 1SIQA 3S7WA 3HWCA 1QDBA 2DDHA 2RFQA 3D9FA 1BUCA 3GNCA 3UBRA 5K3HA 4Q1OA 2OT4A 1UKWA 5K3GA 1IS2A 3BNFA 4N5FA 3OIBA 4IRNA 5K3JA 3MMOA 3SF6A 2VR0A 1IVHA 2REHA 3B96A 4W9UA 3L1TA 2PG0A 2JBSA 4Q5CA 2CX9A 2IX5A 2YYMA 2RF7A 4WJYA 3PFDA 4OO2A 3P4TA 2YYLA 2DVLA 3BNGA 1EGEA 3SWOA 2R0MA 1RX0A 3MPIA 4KTOA 1FS7A 4XVXA 2J7AA 2OR0A 4RM7A 2C0UA 2E81A 3SXQA 1T9GA 1WS9A 4L3YA 3D9GA 3D1IA 3X0YA 2D29A 2R0NA 2ZAFA 4HR3A 3EOMA 2RDZA 3MDDA 1JQIA 3OWMA 3EONA 3MKHA 4U83A 1SIRA 2YYKA 2YYIA 2JIFA 1GU6A 3R7KA 3OWAA 3LG1A 5K3IA 3RKHA 4L3ZA 3GM6A 4L3XA 4IV6A 3BNHA 4NXLA 4JEKA 3AFEA 2Z1QA 3FO3A 3UU9A 1EGCA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1W07 A;  3AFF A;  1U8V A;  2C12 A;  1EGD A;  4X28 C;  1OAH A;  4ZYJ A;  2UXW A;  1UDY A;  2JBR A;  2YYJ A;  3FCJ A;  2ZO5 A;  3D9D A;  2VIG A;  2YYG A;  3SCE A;  3LGQ A;  4Q17 A;  3MDE A;  3D9E A;  4M9A A;  4Q0T A;  2A1T A;  4Q5B A;  2FON A;  3BNJ A;  3D6B A;  3MPJ A;  3MXL A;  1FS9 A;  2E80 A;  3M9V A;  2WBI A;  3NF4 A;  3TOR A;  3X0X A;  4Q4U A;  2IX6 A;  2EBA A;  3GQT A;  4O5M A;  4G5E A;  3II9 A;  1R2J A;  4P13 A;  1FS8 A;  4L1F A;  4KCF A;  3F29 A;  2JBT A;  4X28 A;  4ZXV A;  3TTB A;  4DOY A;  4L38 A;  1SIQ A;  3S7W A;  3HWC A;  1QDB A;  2DDH A;  2RFQ A;  3D9F A;  1BUC A;  3GNC A;  3UBR A;  5K3H A;  4Q1O A;  2OT4 A;  1UKW A;  5K3G A;  1IS2 A;  3BNF A;  4N5F A;  3OIB A;  4IRN A;  5K3J A;  3MMO A;  3SF6 A;  2VR0 A;  1IVH A;  2REH A;  3B96 A;  4W9U A;  3L1T A;  2PG0 A;  2JBS A;  4Q5C A;  2CX9 A;  2IX5 A;  2YYM A;  2RF7 A;  4WJY A;  3PFD A;  4OO2 A;  3P4T A;  2YYL A;  2DVL A;  3BNG A;  1EGE A;  3SWO A;  2R0M A;  1RX0 A;  3MPI A;  4KTO A;  1FS7 A;  4XVX A;  2J7A A;  2OR0 A;  4RM7 A;  2C0U A;  2E81 A;  3SXQ A;  1T9G A;  1WS9 A;  4L3Y A;  3D9G A;  3D1I A;  3X0Y A;  2D29 A;  2R0N A;  2ZAF A;  4HR3 A;  3EOM A;  2RDZ A;  3MDD A;  1JQI A;  3OWM A;  3EON A;  3MKH A;  4U83 A;  1SIR A;  2YYK A;  2YYI A;  2JIF A;  1GU6 A;  3R7K A;  3OWA A;  3LG1 A;  5K3I A;  3RKH A;  4L3Z A;  3GM6 A;  4L3X A;  4IV6 A;  3BNH A;  4NXL A;  4JEK A;  3AFE A;  2Z1Q A;  3FO3 A;  3UU9 A;  1EGC A; 
#chains in the Genus database with same CATH topology
 1W07 A;  1K8T A;  3AFF A;  3N0R A;  1U8V A;  2C12 A;  1EGD A;  4X28 C;  4MP7 A;  1OAH A;  2ZKJ A;  1GKZ A;  4ZYJ A;  2UXW A;  5B5W A;  1UDY A;  1Y8N A;  2JBR A;  2AZE A;  1PI1 A;  2E0A A;  2LFW A;  2YYJ A;  4AKG A;  2VF1 A;  3FCJ A;  4E01 A;  2ZO5 A;  3D9D A;  2VIG A;  1X91 A;  1LVC A;  2YYG A;  3SCE A;  3LGQ A;  4Q17 A;  3MDE A;  4G97 A;  3D9E A;  1S26 A;  4M9A A;  4Q0T A;  2BU8 A;  2EBF X;  3VKH A;  2A1T A;  4Q5B A;  2FON A;  5J71 A;  1K90 A;  3BNJ A;  3D6B A;  4FZ4 A;  1XFY A;  3MPJ A;  3MXL A;  1FS9 A;  2E80 A;  3D2R A;  3M9V A;  5J6A A;  3C3L A;  2WBI A;  2CJ6 A;  2PNR A;  2R03 A;  4KSA A;  3CE2 A;  2BU2 A;  3NF4 A;  4F0X A;  2HJN A;  3TOR A;  3X0X A;  1GJV A;  1SK6 A;  2IX6 A;  2EBA A;  3GQT A;  4O5M A;  1RP3 A;  2EBH X;  4G5E A;  3II9 A;  1R2J A;  4P13 A;  1FS8 A;  1JM6 A;  4H85 A;  4L1F A;  4P79 A;  2Q8H A;  4KCF A;  4H7Q A;  2OEV A;  2JBT A;  3F29 A;  4FF1 A;  2FP2 A;  1RJ4 A;  4X28 A;  2FP1 A;  4ZXV A;  2YGW A;  4DOY A;  1Y8O A;  1SIQ A;  1XFZ A;  4L38 A;  3TTB A;  3TZ2 A;  3S7W A;  2XS1 A;  3HWC A;  4E00 A;  5B6B A;  2CJ4 A;  1QDB A;  2DDH A;  2RFQ A;  3D9F A;  1BUC A;  3GNC A;  4E02 A;  3C46 A;  4Q4U A;  3UBR A;  4V26 A;  4DZY A;  4H81 A;  1Y0V A;  5K3H A;  4Q1O A;  2OT4 A;  2PO4 A;  1UKW A;  5K3G A;  3X29 A;  2BU7 A;  2GBB A;  4LQQ B;  4AI6 A;  2F6L A;  1IS2 A;  3BNF A;  2OJQ A;  5B5V A;  3Q24 A;  4N5F A;  3OIB A;  2Q8I A;  4IRN A;  5K3J A;  2ZDX A;  3MMO A;  3SF6 A;  4JIO A;  4FF4 A;  4MPC A;  4HKR A;  2VR0 A;  1IVH A;  2REH A;  4QIC A;  3B96 A;  4W9U A;  3L1T A;  2PG0 A;  2BTZ A;  3C2P A;  1R3B A;  1Y8P A;  3CRK A;  2JBS A;  5GJV E;  3TZ4 A;  2AO2 A;  2ZDY A;  2R05 A;  2CX9 A;  2IX5 A;  2XS8 A;  2YYM A;  4Q5C A;  1K93 A;  2RF7 A;  1GKX A;  4WJY A;  3PFD A;  2BU6 A;  5M4P A;  4OO2 A;  3P4T A;  2YYL A;  2DVL A;  3BNG A;  1EGE A;  3SWO A;  1RJ1 A;  4JIZ A;  3CRL A;  5EZ3 A;  2R0M A;  1XFU A;  2BU5 A;  1RX0 A;  4HKS A;  4V25 A;  2Q8F A;  3MPI A;  4KTO A;  4FF2 A;  4LQS B;  4AKI A;  4KS9 A;  1FS7 A;  4XVX A;  2J7A A;  2OR0 A;  4RM7 A;  2C0U A;  2E81 A;  3SXQ A;  1PK0 A;  1T9G A;  1WS9 A;  4FF3 A;  4L3Y A;  3VAD A;  3TZ0 A;  1XFV A;  2OEX A;  1X90 A;  3Q23 A;  3U33 A;  3D9G A;  3D1I A;  3X0Y A;  3Q22 A;  2QR4 A;  2EC5 A;  5M4K A;  5M4M A;  2D29 A;  2R0N A;  2ZAF A;  4HR3 A;  3EOM A;  2RDZ A;  3MDD A;  1JQI A;  3OWM A;  3EON A;  3MKH A;  4U83 A;  4KSF A;  1SIR A;  4MP2 A;  2YYK A;  2YYI A;  2JIF A;  2CJ5 A;  1GU6 A;  3R7K A;  5BRK A;  3VKG A;  1XG2 B;  3OWA A;  4J1V A;  4MPN A;  3LG1 A;  5K3I A;  4AKH A;  3RKH A;  4L3Z A;  3GM6 A;  4L3X A;  4IV6 A;  1X8Z A;  3BNH A;  4NXL A;  1XFW A;  5GJW E;  4JEK A;  3AFE A;  2CJ7 A;  2Z1Q A;  5BRM A;  3Q0A A;  4MPE A;  3DJL A;  5M4N A;  3KML A;  2Q8G A;  1XFX A;  1SC5 A;  3FO3 A;  3UU9 A;  2R02 A;  2XQR B;  2CJ8 A;  1EGC A;  3TZ5 A; 
#chains in the Genus database with same CATH homology
 1W07 A;  3AFF A;  1U8V A;  2C12 A;  1EGD A;  4X28 C;  1OAH A;  4ZYJ A;  2UXW A;  1UDY A;  2JBR A;  2YYJ A;  3FCJ A;  2ZO5 A;  3D9D A;  2VIG A;  2YYG A;  3SCE A;  3LGQ A;  4Q17 A;  3MDE A;  3D9E A;  4M9A A;  4Q0T A;  2A1T A;  4Q5B A;  2FON A;  3BNJ A;  3D6B A;  3MPJ A;  3MXL A;  1FS9 A;  2E80 A;  3M9V A;  2WBI A;  3NF4 A;  3TOR A;  3X0X A;  4Q4U A;  2IX6 A;  2EBA A;  3GQT A;  4O5M A;  4G5E A;  3II9 A;  1R2J A;  4P13 A;  1FS8 A;  4L1F A;  4KCF A;  3F29 A;  2JBT A;  4X28 A;  4ZXV A;  3TTB A;  4DOY A;  4L38 A;  1SIQ A;  3S7W A;  3HWC A;  1QDB A;  2DDH A;  2RFQ A;  3D9F A;  1BUC A;  3GNC A;  3UBR A;  5K3H A;  4Q1O A;  2OT4 A;  1UKW A;  5K3G A;  1IS2 A;  3BNF A;  4N5F A;  3OIB A;  4IRN A;  5K3J A;  3MMO A;  3SF6 A;  2VR0 A;  1IVH A;  2REH A;  3B96 A;  4W9U A;  3L1T A;  2PG0 A;  2JBS A;  4Q5C A;  2CX9 A;  2IX5 A;  2YYM A;  2RF7 A;  4WJY A;  3PFD A;  4OO2 A;  3P4T A;  2YYL A;  2DVL A;  3BNG A;  1EGE A;  3SWO A;  2R0M A;  1RX0 A;  3MPI A;  4KTO A;  1FS7 A;  4XVX A;  2J7A A;  2OR0 A;  4RM7 A;  2C0U A;  2E81 A;  3SXQ A;  1T9G A;  1WS9 A;  4L3Y A;  3D9G A;  3D1I A;  3X0Y A;  2D29 A;  2R0N A;  2ZAF A;  4HR3 A;  3EOM A;  2RDZ A;  3MDD A;  1JQI A;  3OWM A;  3EON A;  3MKH A;  4U83 A;  1SIR A;  2YYK A;  2YYI A;  2JIF A;  1GU6 A;  3R7K A;  3OWA A;  3LG1 A;  5K3I A;  3RKH A;  4L3Z A;  3GM6 A;  4L3X A;  4IV6 A;  3BNH A;  4NXL A;  4JEK A;  3AFE A;  2Z1Q A;  3FO3 A;  3UU9 A;  1EGC A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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