2ZAFA

Mechanistic and structural analyses of the roles of arg409 and asp402 in the reaction of the flavoprotein nitroalkane oxidase
Total Genus 156
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
156
sequence length
430
structure length
430
Chain Sequence
VDFKLSPSQLEARRHAQAFANTVLTKASAEYSTQKDQLSRFQATRPFYREAVRHGLIKAQVPIPLGGTMESLVHESIILEELFAVEPATSITIVATALGLMPVILCDSPSLQEKFLKPFISGEGEPLASLMHSEPNGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNSGGWDYKGADLACVVCRVSDDPSKPQDPNVDPATQIAVLLVTRETIANNKKDAYQILGEPELAGHITTSGPHTRFTEFHVPHENLLCTPGLKAQGLVETAFAMSAALVGAMAIGTARAAFEEALVFAKSDTRGGSKHIIEHQSVADKLIDCKIRLETSRLLVWKAVTTLEDEALEWKVKLEMAMQTKIYTTDVAVECVIDAMKAVGMKSYAKDMSFPRLLNEVMCYPLFDGGNIGLKRRQMQRVMALEDYEPWAATYGS
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords Nitroalkane oxidase
publication title Mechanistic and structural analyses of the roles of Arg409 and Asp402 in the reaction of the flavoprotein nitroalkane oxidase.
pubmed doi rcsb
source organism Fusarium oxysporum
total genus 156
structure length 430
sequence length 430
chains with identical sequence B, C, D
ec nomenclature ec 1.7.3.1: Nitroalkane oxidase.
pdb deposition date 2007-10-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00441 Acyl-CoA_dh_1 Acyl-CoA dehydrogenase, C-terminal domain
A PF02771 Acyl-CoA_dh_N Acyl-CoA dehydrogenase, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.540.10 Mainly Alpha Orthogonal Bundle Butyryl-Coa Dehydrogenase, subunit A; domain 1 Acyl-CoA dehydrogenase/oxidase, N-terminal domain 2zafA01
1.20.140.10 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A; domain 3 Butyryl-CoA Dehydrogenase, subunit A, domain 3 2zafA03
2.40.110.10 Mainly Beta Beta Barrel Butyryl-CoA Dehydrogenase, subunit A; domain 2 Butyryl-CoA Dehydrogenase, subunit A, domain 2 2zafA02
3MDEA 1RX0A 4X28C 2JBTA 3S7WA 2RFQA 3MPJA 2Z1QA 3X0XA 2ZO5A 3EONA 3MKHA 1EGDA 3AFEA 4Q1OA 3MMOA 2VR0A 2E80A 2EBAA 4Q4UA 3SWOA 4XVXA 2JBRA 2IX6A 4Q17A 5K3HA 2JIFA 5K3IA 3GM6A 1U8VA 3AFFA 2CX9A 3LGQA 3TTBA 1UDYA 1T9GA 1EGEA 2DVLA 1FS7A 2YYJA 3GNCA 4IRNA 4L3YA 3B96A 4ZXVA 2JBSA 3BNFA 2R0MA 3RKHA 2ZAFA 4JEKA 3D9DA 3MPIA 3OWAA 1EGCA 3D1IA 1R2JA 5K3GA 2A1TA 3NF4A 4HR3A 3D9FA 2IX5A 4ZYJA 3BNHA 4Q5BA 3M9VA 3LG1A 3TORA 2DDHA 2D29A 3D9EA 3L1TA 2RF7A 4NXLA 4X28A 2PG0A 3X0YA 1SIQA 4L3ZA 4KTOA 1OAHA 1WS9A 4DOYA 3F29A 2R0NA 3EOMA 3UBRA 4O5MA 4G5EA 4WJYA 1QDBA 2FONA 2YYKA 1W07A 4L1FA 2VIGA 1FS9A 4U83A 5K3JA 3BNJA 3BNGA 1IVHA 1BUCA 3II9A 3SF6A 1GU6A 2YYLA 3SXQA 1JQIA 4KCFA 4P13A 2OR0A 4M9AA 2WBIA 2J7AA 3OWMA 3D9GA 3MDDA 4OO2A 3PFDA 4N5FA 3OIBA 2YYIA 4IV6A 2YYGA 3FO3A 4L3XA 2C0UA 3D6BA 2RDZA 3SCEA 3GQTA 1FS8A 1UKWA 1SIRA 3R7KA 2E81A 2REHA 3FCJA 1IS2A 3UU9A 2OT4A 2UXWA 2C12A 4W9UA 3MXLA 4Q5CA 3P4TA 4Q0TA 4L38A 3HWCA 4RM7A 2YYMA
chains in the Genus database with same CATH superfamily
2OEVA 3MDEA 1RX0A 4X28C 2JBTA 1Y8NA 3S7WA 4H81A 3U33A 2RFQA 3MPJA 1R3BA 2Z1QA 2ZDXA 2ZKJA 3TZ5A 3X0XA 5M4KA 2ZO5A 1Y0VA 1K93A 4FF2A 3EONA 3MKHA 1EGDA 3AFEA 4Q1OA 3MMOA 3VKGA 5B5VA 2VR0A 3Q24A 2YGWA 2E80A 2EBAA 5J6AA 4Q4UA 3SWOA 4XVXA 5M4MA 2JBRA 2IX6A 2CJ8A 4Q17A 5K3HA 2JIFA 2XS8A 3C3LA 5K3IA 3GM6A 1U8VA 2FP1A 3AFFA 2CX9A 2HJNA 3CRKA 4E01A 3LGQA 4MPCA 1S26A 1XG2B 2R03A 3TTBA 1XFVA 1UDYA 1T9GA 2BU8A 3CE2A 1EGEA 2DVLA 1FS7A 2EBHX 2YYJA 3GNCA 4IRNA 4L3YA 1GKXA 2BU7A 2CJ7A 2XS1A 4KSAA 3B96A 4MP2A 2Q8HA 4ZXVA 4FF1A 1X91A 1K8TA 4AKHA 2JBSA 3C2PA 3BNFA 2R0MA 5M4NA 2BU5A 2AO2A 1XFXA 2PNRA 3RKHA 2ZAFA 3Q22A 4JEKA 3D9DA 3MPIA 3OWAA 1RJ4A 1PK0A 5EZ3A 1EGCA 3D1IA 1R2JA 2Q8GA 2Q8IA 5K3GA 2A1TA 3NF4A 4HR3A 3D9FA 2IX5A 4ZYJA 2BU2A 4MPNA 1X90A 2R02A 3BNHA 4Q5BA 3M9VA 3C46A 3LG1A 4AI6A 4KS9A 4LQSB 3TORA 2DDHA 2D29A 3D9EA 2F6LA 4H85A 3L1TA 4HKSA 4JIOA 2RF7A 2R05A 4NXLA 4X28A 2PG0A 3X0YA 1SIQA 2EC5A 3VADA 4L3ZA 2OJQA 4KTOA 1OAHA 1WS9A 4DOYA 3F29A 2VF1A 3N0RA 5B6BA 4FZ4A 2CJ5A 2R0NA 1GKZA 3EOMA 1PI1A 3TZ4A 3UBRA 4O5MA 4G5EA 4WJYA 4MPEA 3TZ2A 5J71A 1QDBA 2FONA 2AZEA 2YYKA 1W07A 4L1FA 4HKRA 2VIGA 4DZYA 1FS9A 4U83A 2FP2A 4KSFA 4H7QA 3X29A 5K3JA 4MP7A 3BNJA 3BNGA 1IVHA 1BUCA 2BU6A 3CRLA 2PO4A 3II9A 3SF6A 1GU6A 2E0AA 2GBBA 2YYLA 1JQIA 3SXQA 4KCFA 3TZ0A 4P13A 1X8ZA 1Y8PA 3VKHA 5B5WA 4V26A 4FF4A 2OR0A 2ZDYA 2QR4A 4M9AA 2WBIA 2J7AA 3OWMA 1XFYA 1SC5A 4G97A 3D9GA 2Q8FA 3MDDA 4OO2A 2LFWA 4F0XA 3PFDA 4N5FA 3OIBA 2YYIA 3D2RA 4JIZA 4IV6A 2CJ6A 2YYGA 1XFUA 3FO3A 5GJVE 1XFWA 4QICA 1GJVA 4L3XA 2C0UA 4E02A 4J1VA 4P79A 4E00A 3D6BA 1XFZA 4V25A 2RDZA 3SCEA 1RJ1A 1SK6A 3GQTA 1FS8A 1UKWA 4AKIA 1SIRA 3R7KA 2OEXA 5M4PA 3Q0AA 2E81A 1JM6A 3KMLA 4AKGA 2REHA 1Y8OA 4FF3A 3FCJA 1IS2A 3UU9A 1K90A 1RP3A 2UXWA 2CJ4A 2OT4A 2C12A 2XQRB 5BRKA 2EBFX 1LVCA 4W9UA 2BTZA 4LQQB 3MXLA 4Q5CA 3Q23A 3P4TA 4Q0TA 3DJLA 5GJWE 4L38A 3HWCA 5BRMA 4RM7A 2YYMA
chains in the Genus database with same CATH topology
3MDEA 1RX0A 4X28C 2JBTA 3S7WA 2RFQA 3MPJA 2Z1QA 3X0XA 2ZO5A 3EONA 3MKHA 1EGDA 3AFEA 4Q1OA 3MMOA 2VR0A 2E80A 2EBAA 4Q4UA 3SWOA 4XVXA 2JBRA 2IX6A 4Q17A 5K3HA 2JIFA 5K3IA 3GM6A 1U8VA 3AFFA 2CX9A 3LGQA 3TTBA 1UDYA 1T9GA 1EGEA 2DVLA 1FS7A 2YYJA 3GNCA 4IRNA 4L3YA 3B96A 4ZXVA 2JBSA 3BNFA 2R0MA 3RKHA 2ZAFA 4JEKA 3D9DA 3MPIA 3OWAA 1EGCA 3D1IA 1R2JA 5K3GA 2A1TA 3NF4A 4HR3A 3D9FA 2IX5A 4ZYJA 3BNHA 4Q5BA 3M9VA 3LG1A 3TORA 2DDHA 2D29A 3D9EA 3L1TA 2RF7A 4NXLA 4X28A 2PG0A 3X0YA 1SIQA 4L3ZA 4KTOA 1OAHA 1WS9A 4DOYA 3F29A 2R0NA 3EOMA 3UBRA 4O5MA 4G5EA 4WJYA 1QDBA 2FONA 2YYKA 1W07A 4L1FA 2VIGA 1FS9A 4U83A 5K3JA 3BNJA 3BNGA 1IVHA 1BUCA 3II9A 3SF6A 1GU6A 2YYLA 3SXQA 1JQIA 4KCFA 4P13A 2OR0A 4M9AA 2WBIA 2J7AA 3OWMA 3D9GA 3MDDA 4OO2A 3PFDA 4N5FA 3OIBA 2YYIA 4IV6A 2YYGA 3FO3A 4L3XA 2C0UA 3D6BA 2RDZA 3SCEA 3GQTA 1FS8A 1UKWA 1SIRA 3R7KA 2E81A 2REHA 3FCJA 1IS2A 3UU9A 2OT4A 2UXWA 2C12A 4W9UA 3MXLA 4Q5CA 3P4TA 4Q0TA 4L38A 3HWCA 4RM7A 2YYMA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3MDE A;  1RX0 A;  4X28 C;  2JBT A;  3S7W A;  2RFQ A;  3MPJ A;  2Z1Q A;  3X0X A;  2ZO5 A;  3EON A;  3MKH A;  1EGD A;  3AFE A;  4Q1O A;  3MMO A;  2VR0 A;  2E80 A;  2EBA A;  4Q4U A;  3SWO A;  4XVX A;  2JBR A;  2IX6 A;  4Q17 A;  5K3H A;  2JIF A;  5K3I A;  3GM6 A;  1U8V A;  3AFF A;  2CX9 A;  3LGQ A;  3TTB A;  1UDY A;  1T9G A;  1EGE A;  2DVL A;  1FS7 A;  2YYJ A;  3GNC A;  4IRN A;  4L3Y A;  3B96 A;  4ZXV A;  2JBS A;  3BNF A;  2R0M A;  3RKH A;  2ZAF A;  4JEK A;  3D9D A;  3MPI A;  3OWA A;  1EGC A;  3D1I A;  1R2J A;  5K3G A;  2A1T A;  3NF4 A;  4HR3 A;  3D9F A;  2IX5 A;  4ZYJ A;  3BNH A;  4Q5B A;  3M9V A;  3LG1 A;  3TOR A;  2DDH A;  2D29 A;  3D9E A;  3L1T A;  2RF7 A;  4NXL A;  4X28 A;  2PG0 A;  3X0Y A;  1SIQ A;  4L3Z A;  4KTO A;  1OAH A;  1WS9 A;  4DOY A;  3F29 A;  2R0N A;  3EOM A;  3UBR A;  4O5M A;  4G5E A;  4WJY A;  1QDB A;  2FON A;  2YYK A;  1W07 A;  4L1F A;  2VIG A;  1FS9 A;  4U83 A;  5K3J A;  3BNJ A;  3BNG A;  1IVH A;  1BUC A;  3II9 A;  3SF6 A;  1GU6 A;  2YYL A;  3SXQ A;  1JQI A;  4KCF A;  4P13 A;  2OR0 A;  4M9A A;  2WBI A;  2J7A A;  3OWM A;  3D9G A;  3MDD A;  4OO2 A;  3PFD A;  4N5F A;  3OIB A;  2YYI A;  4IV6 A;  2YYG A;  3FO3 A;  4L3X A;  2C0U A;  3D6B A;  2RDZ A;  3SCE A;  3GQT A;  1FS8 A;  1UKW A;  1SIR A;  3R7K A;  2E81 A;  2REH A;  3FCJ A;  1IS2 A;  3UU9 A;  2OT4 A;  2UXW A;  2C12 A;  4W9U A;  3MXL A;  4Q5C A;  3P4T A;  4Q0T A;  4L38 A;  3HWC A;  4RM7 A;  2YYM A; 
#chains in the Genus database with same CATH topology
 2OEV A;  3MDE A;  1RX0 A;  4X28 C;  2JBT A;  1Y8N A;  3S7W A;  4H81 A;  3U33 A;  2RFQ A;  3MPJ A;  1R3B A;  2Z1Q A;  2ZDX A;  2ZKJ A;  3TZ5 A;  3X0X A;  5M4K A;  2ZO5 A;  1Y0V A;  1K93 A;  4FF2 A;  3EON A;  3MKH A;  1EGD A;  3AFE A;  4Q1O A;  3MMO A;  3VKG A;  5B5V A;  2VR0 A;  3Q24 A;  2YGW A;  2E80 A;  2EBA A;  5J6A A;  4Q4U A;  3SWO A;  4XVX A;  5M4M A;  2JBR A;  2IX6 A;  2CJ8 A;  4Q17 A;  5K3H A;  2JIF A;  2XS8 A;  3C3L A;  5K3I A;  3GM6 A;  1U8V A;  2FP1 A;  3AFF A;  2CX9 A;  2HJN A;  3CRK A;  4E01 A;  3LGQ A;  4MPC A;  1S26 A;  1XG2 B;  2R03 A;  3TTB A;  1XFV A;  1UDY A;  1T9G A;  2BU8 A;  3CE2 A;  1EGE A;  2DVL A;  1FS7 A;  2EBH X;  2YYJ A;  3GNC A;  4IRN A;  4L3Y A;  1GKX A;  2BU7 A;  2CJ7 A;  2XS1 A;  4KSA A;  3B96 A;  4MP2 A;  2Q8H A;  4ZXV A;  4FF1 A;  1X91 A;  1K8T A;  4AKH A;  2JBS A;  3C2P A;  3BNF A;  2R0M A;  5M4N A;  2BU5 A;  2AO2 A;  1XFX A;  2PNR A;  3RKH A;  2ZAF A;  3Q22 A;  4JEK A;  3D9D A;  3MPI A;  3OWA A;  1RJ4 A;  1PK0 A;  5EZ3 A;  1EGC A;  3D1I A;  1R2J A;  2Q8G A;  2Q8I A;  5K3G A;  2A1T A;  3NF4 A;  4HR3 A;  3D9F A;  2IX5 A;  4ZYJ A;  2BU2 A;  4MPN A;  1X90 A;  2R02 A;  3BNH A;  4Q5B A;  3M9V A;  3C46 A;  3LG1 A;  4AI6 A;  4KS9 A;  4LQS B;  3TOR A;  2DDH A;  2D29 A;  3D9E A;  2F6L A;  4H85 A;  3L1T A;  4HKS A;  4JIO A;  2RF7 A;  2R05 A;  4NXL A;  4X28 A;  2PG0 A;  3X0Y A;  1SIQ A;  2EC5 A;  3VAD A;  4L3Z A;  2OJQ A;  4KTO A;  1OAH A;  1WS9 A;  4DOY A;  3F29 A;  2VF1 A;  3N0R A;  5B6B A;  4FZ4 A;  2CJ5 A;  2R0N A;  1GKZ A;  3EOM A;  1PI1 A;  3TZ4 A;  3UBR A;  4O5M A;  4G5E A;  4WJY A;  4MPE A;  3TZ2 A;  5J71 A;  1QDB A;  2FON A;  2AZE A;  2YYK A;  1W07 A;  4L1F A;  4HKR A;  2VIG A;  4DZY A;  1FS9 A;  4U83 A;  2FP2 A;  4KSF A;  4H7Q A;  3X29 A;  5K3J A;  4MP7 A;  3BNJ A;  3BNG A;  1IVH A;  1BUC A;  2BU6 A;  3CRL A;  2PO4 A;  3II9 A;  3SF6 A;  1GU6 A;  2E0A A;  2GBB A;  2YYL A;  1JQI A;  3SXQ A;  4KCF A;  3TZ0 A;  4P13 A;  1X8Z A;  1Y8P A;  3VKH A;  5B5W A;  4V26 A;  4FF4 A;  2OR0 A;  2ZDY A;  2QR4 A;  4M9A A;  2WBI A;  2J7A A;  3OWM A;  1XFY A;  1SC5 A;  4G97 A;  3D9G A;  2Q8F A;  3MDD A;  4OO2 A;  2LFW A;  4F0X A;  3PFD A;  4N5F A;  3OIB A;  2YYI A;  3D2R A;  4JIZ A;  4IV6 A;  2CJ6 A;  2YYG A;  1XFU A;  3FO3 A;  5GJV E;  1XFW A;  4QIC A;  1GJV A;  4L3X A;  2C0U A;  4E02 A;  4J1V A;  4P79 A;  4E00 A;  3D6B A;  1XFZ A;  4V25 A;  2RDZ A;  3SCE A;  1RJ1 A;  1SK6 A;  3GQT A;  1FS8 A;  1UKW A;  4AKI A;  1SIR A;  3R7K A;  2OEX A;  5M4P A;  3Q0A A;  2E81 A;  1JM6 A;  3KML A;  4AKG A;  2REH A;  1Y8O A;  4FF3 A;  3FCJ A;  1IS2 A;  3UU9 A;  1K90 A;  1RP3 A;  2UXW A;  2CJ4 A;  2OT4 A;  2C12 A;  2XQR B;  5BRK A;  2EBF X;  1LVC A;  4W9U A;  2BTZ A;  4LQQ B;  3MXL A;  4Q5C A;  3Q23 A;  3P4T A;  4Q0T A;  3DJL A;  5GJW E;  4L38 A;  3HWC A;  5BRM A;  4RM7 A;  2YYM A; 
#chains in the Genus database with same CATH homology
 3MDE A;  1RX0 A;  4X28 C;  2JBT A;  3S7W A;  2RFQ A;  3MPJ A;  2Z1Q A;  3X0X A;  2ZO5 A;  3EON A;  3MKH A;  1EGD A;  3AFE A;  4Q1O A;  3MMO A;  2VR0 A;  2E80 A;  2EBA A;  4Q4U A;  3SWO A;  4XVX A;  2JBR A;  2IX6 A;  4Q17 A;  5K3H A;  2JIF A;  5K3I A;  3GM6 A;  1U8V A;  3AFF A;  2CX9 A;  3LGQ A;  3TTB A;  1UDY A;  1T9G A;  1EGE A;  2DVL A;  1FS7 A;  2YYJ A;  3GNC A;  4IRN A;  4L3Y A;  3B96 A;  4ZXV A;  2JBS A;  3BNF A;  2R0M A;  3RKH A;  2ZAF A;  4JEK A;  3D9D A;  3MPI A;  3OWA A;  1EGC A;  3D1I A;  1R2J A;  5K3G A;  2A1T A;  3NF4 A;  4HR3 A;  3D9F A;  2IX5 A;  4ZYJ A;  3BNH A;  4Q5B A;  3M9V A;  3LG1 A;  3TOR A;  2DDH A;  2D29 A;  3D9E A;  3L1T A;  2RF7 A;  4NXL A;  4X28 A;  2PG0 A;  3X0Y A;  1SIQ A;  4L3Z A;  4KTO A;  1OAH A;  1WS9 A;  4DOY A;  3F29 A;  2R0N A;  3EOM A;  3UBR A;  4O5M A;  4G5E A;  4WJY A;  1QDB A;  2FON A;  2YYK A;  1W07 A;  4L1F A;  2VIG A;  1FS9 A;  4U83 A;  5K3J A;  3BNJ A;  3BNG A;  1IVH A;  1BUC A;  3II9 A;  3SF6 A;  1GU6 A;  2YYL A;  3SXQ A;  1JQI A;  4KCF A;  4P13 A;  2OR0 A;  4M9A A;  2WBI A;  2J7A A;  3OWM A;  3D9G A;  3MDD A;  4OO2 A;  3PFD A;  4N5F A;  3OIB A;  2YYI A;  4IV6 A;  2YYG A;  3FO3 A;  4L3X A;  2C0U A;  3D6B A;  2RDZ A;  3SCE A;  3GQT A;  1FS8 A;  1UKW A;  1SIR A;  3R7K A;  2E81 A;  2REH A;  3FCJ A;  1IS2 A;  3UU9 A;  2OT4 A;  2UXW A;  2C12 A;  4W9U A;  3MXL A;  4Q5C A;  3P4T A;  4Q0T A;  4L38 A;  3HWC A;  4RM7 A;  2YYM A; 
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similar chains in the Genus database (?% sequence similarity)
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