2ZAFA

Mechanistic and structural analyses of the roles of arg409 and asp402 in the reaction of the flavoprotein nitroalkane oxidase
Total Genus 156
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
156
sequence length
430
structure length
430
Chain Sequence
VDFKLSPSQLEARRHAQAFANTVLTKASAEYSTQKDQLSRFQATRPFYREAVRHGLIKAQVPIPLGGTMESLVHESIILEELFAVEPATSITIVATALGLMPVILCDSPSLQEKFLKPFISGEGEPLASLMHSEPNGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNSGGWDYKGADLACVVCRVSDDPSKPQDPNVDPATQIAVLLVTRETIANNKKDAYQILGEPELAGHITTSGPHTRFTEFHVPHENLLCTPGLKAQGLVETAFAMSAALVGAMAIGTARAAFEEALVFAKSDTRGGSKHIIEHQSVADKLIDCKIRLETSRLLVWKAVTTLEDEALEWKVKLEMAMQTKIYTTDVAVECVIDAMKAVGMKSYAKDMSFPRLLNEVMCYPLFDGGNIGLKRRQMQRVMALEDYEPWAATYGS
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Nitroalkane oxidase
publication title Mechanistic and structural analyses of the roles of Arg409 and Asp402 in the reaction of the flavoprotein nitroalkane oxidase.
pubmed doi rcsb
source organism Fusarium oxysporum
molecule tags Oxidoreductase
total genus 156
structure length 430
sequence length 430
chains with identical sequence B, C, D
ec nomenclature ec 1.7.3.1: Nitroalkane oxidase.
pdb deposition date 2007-10-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00441 Acyl-CoA_dh_1 Acyl-CoA dehydrogenase, C-terminal domain
A PF02771 Acyl-CoA_dh_N Acyl-CoA dehydrogenase, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.540.10 Mainly Alpha Orthogonal Bundle Butyryl-Coa Dehydrogenase, subunit A; domain 1 Acyl-CoA dehydrogenase/oxidase, N-terminal domain 2zafA01
1.20.140.10 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A; domain 3 Butyryl-CoA Dehydrogenase, subunit A, domain 3 2zafA03
2.40.110.10 Mainly Beta Beta Barrel Butyryl-CoA Dehydrogenase, subunit A; domain 2 Butyryl-CoA Dehydrogenase, subunit A, domain 2 2zafA02
1SIQA 4Q17A 2DDHA 2YYIA 3X0XA 4X28C 2YYJA 4OO2A 1JQIA 3UBRA 3PFDA 3B96A 2JBSA 1GU6A 1UKWA 4W9UA 2D29A 5K3IA 3BNHA 3OIBA 3OWAA 2RFQA 2R0MA 4ZYJA 3HWCA 2ZO5A 3F29A 2IX6A 4M9AA 4JEKA 1QDBA 3AFFA 3OWMA 3MDEA 4L3XA 3SF6A 3M9VA 3P4TA 2C0UA 4NXLA 1U8VA 1EGDA 3L1TA 3D9GA 3MDDA 4O5MA 3FO3A 1WS9A 4Q5BA 3MPJA 3TORA 4X28A 2UXWA 2DVLA 2JIFA 5K3JA 2Z1QA 2C12A 2R0NA 5K3HA 1OAHA 3MKHA 3MPIA 2PG0A 2J7AA 2E80A 3BNGA 1T9GA 3D6BA 2YYGA 4P13A 2OR0A 2ZAFA 4KCFA 4XVXA 4Q4UA 4IRNA 3AFEA 3MXLA 4U83A 3FCJA 4N5FA 4L3ZA 1FS8A 1IS2A 2VIGA 3TTBA 2EBAA 3D9DA 3EOMA 3LG1A 4Q0TA 4ZXVA 3MMOA 2RF7A 3LGQA 3NF4A 4L38A 3GQTA 3R7KA 1W07A 3D9EA 1SIRA 2JBTA 3SWOA 4WJYA 4IV6A 4G5EA 2OT4A 4HR3A 4DOYA 1BUCA 3GM6A 3SXQA 1EGEA 4Q1OA 1EGCA 3D1IA 2YYLA 2WBIA 3EONA 4L1FA 3X0YA 1RX0A 2CX9A 2IX5A 3GNCA 2YYMA 3S7WA 4KTOA 2RDZA 4L3YA 2VR0A 2A1TA 4Q5CA 2REHA 3II9A 1IVHA 1FS9A 5K3GA 3BNFA 1FS7A 3D9FA 2YYKA 2FONA 2JBRA 4RM7A 3SCEA 3UU9A 1R2JA 3RKHA 2E81A 3BNJA 1UDYA
chains in the Genus database with same CATH superfamily
1SIQA 4HKRA 4Q17A 2DDHA 2HJNA 2YYIA 2AO2A 1PI1A 3X0XA 2Q8IA 3VADA 4E01A 2EBFX 5B5WA 4X28C 2YYJA 5BRKA 3C3LA 2XQRB 5J71A 5M4KA 4OO2A 1JQIA 3KMLA 3UBRA 3PFDA 3B96A 2JBSA 4LQQB 4AKGA 1GU6A 2GBBA 3Q0AA 1UKWA 4W9UA 2D29A 5K3IA 2FP2A 2XS1A 3OIBA 2F6LA 3OWAA 3BNHA 3VKHA 4MP7A 2RFQA 2R0MA 4ZYJA 1S26A 2EBHX 2CJ7A 2XS8A 1XFUA 2AZEA 2ZKJA 3TZ4A 3HWCA 1JM6A 4LQSB 1XFXA 2BTZA 3U33A 2E0AA 2ZO5A 4AKIA 3C2PA 4G97A 1X8ZA 4FF2A 3F29A 2OJQA 2IX6A 1XFWA 4M9AA 4JEKA 1QDBA 3AFFA 3OWMA 4QICA 3MDEA 2OEXA 3CRKA 4L3XA 3SF6A 2R05A 3CE2A 3M9VA 3P4TA 4P79A 2Q8FA 2C0UA 2CJ5A 2BU8A 4NXLA 4JIOA 1Y8NA 2FP1A 2ZDYA 1XFYA 1U8VA 1EGDA 3L1TA 3TZ2A 3D9GA 4FZ4A 3MDDA 4O5MA 3FO3A 3DJLA 1WS9A 2YGWA 4Q5BA 5GJVE 3MPJA 4HKSA 3TORA 5EZ3A 2CJ4A 3TZ0A 4X28A 2UXWA 3Q24A 3C46A 2DVLA 4V25A 1SC5A 5M4MA 2JIFA 5K3JA 2Z1QA 2C12A 2R0NA 5K3HA 1OAHA 3MKHA 5M4PA 3MPIA 2PG0A 2J7AA 2E80A 3BNGA 1T9GA 1X90A 3D6BA 2YYGA 3X29A 4P13A 1XG2B 2OR0A 3D2RA 2ZAFA 4KCFA 4XVXA 4Q4UA 4IRNA 1GKXA 2BU5A 3AFEA 3MXLA 4J1VA 4U83A 4KSFA 3FCJA 4N5FA 4L3ZA 2BU6A 4KS9A 1FS8A 4F0XA 1IS2A 1PK0A 2VIGA 4MPNA 3TTBA 4H7QA 2EBAA 2LFWA 4H81A 4E00A 1GJVA 3D9DA 2QR4A 2R03A 3EOMA 1RJ1A 3LG1A 4Q0TA 4V26A 2PNRA 3VKGA 4MPEA 4ZXVA 3MMOA 2RF7A 3LGQA 3NF4A 1LVCA 2CJ6A 4L38A 4FF4A 3GQTA 3R7KA 1RP3A 5M4NA 1W07A 2EC5A 1Y8OA 5GJWE 4E02A 3Q23A 2PO4A 3D9EA 1SIRA 2JBTA 3SWOA 3N0RA 4IV6A 4G5EA 4H85A 4HR3A 1Y8PA 4WJYA 2OT4A 4DOYA 1BUCA 2R02A 3GM6A 1SK6A 1Y0VA 5B5VA 3SXQA 2VF1A 4AI6A 1K93A 1EGEA 1RJ4A 3Q22A 1GKZA 2BU2A 4Q1OA 2ZDXA 2BU7A 1K8TA 1EGCA 3D1IA 2YYLA 2WBIA 3EONA 4L1FA 4FF1A 3X0YA 1XFVA 4DZYA 1RX0A 5B6BA 2CX9A 2IX5A 3GNCA 2YYMA 4KSAA 3S7WA 4FF3A 2Q8HA 4AKHA 4KTOA 2RDZA 4L3YA 1K90A 2VR0A 2A1TA 4MP2A 4MPCA 2REHA 3II9A 3CRLA 1IVHA 4Q5CA 3TZ5A 1FS9A 5K3GA 1XFZA 3BNFA 4JIZA 1FS7A 3D9FA 2YYKA 2FONA 2JBRA 4RM7A 1X91A 2OEVA 5BRMA 1R2JA 3RKHA 2E81A 3SCEA 3UU9A 2CJ8A 5J6AA 3BNJA 1UDYA 2Q8GA 1R3BA
chains in the Genus database with same CATH topology
1SIQA 4Q17A 2DDHA 2YYIA 3X0XA 4X28C 2YYJA 4OO2A 1JQIA 3UBRA 3PFDA 3B96A 2JBSA 1GU6A 1UKWA 4W9UA 2D29A 5K3IA 3BNHA 3OIBA 3OWAA 2RFQA 2R0MA 4ZYJA 3HWCA 2ZO5A 3F29A 2IX6A 4M9AA 4JEKA 1QDBA 3AFFA 3OWMA 3MDEA 4L3XA 3SF6A 3M9VA 3P4TA 2C0UA 4NXLA 1U8VA 1EGDA 3L1TA 3D9GA 3MDDA 4O5MA 3FO3A 1WS9A 4Q5BA 3MPJA 3TORA 4X28A 2UXWA 2DVLA 2JIFA 5K3JA 2Z1QA 2C12A 2R0NA 5K3HA 1OAHA 3MKHA 3MPIA 2PG0A 2J7AA 2E80A 3BNGA 1T9GA 3D6BA 2YYGA 4P13A 2OR0A 2ZAFA 4KCFA 4XVXA 4Q4UA 4IRNA 3AFEA 3MXLA 4U83A 3FCJA 4N5FA 4L3ZA 1FS8A 1IS2A 2VIGA 3TTBA 2EBAA 3D9DA 3EOMA 3LG1A 4Q0TA 4ZXVA 3MMOA 2RF7A 3LGQA 3NF4A 4L38A 3GQTA 3R7KA 1W07A 3D9EA 1SIRA 2JBTA 3SWOA 4WJYA 4IV6A 4G5EA 2OT4A 4HR3A 4DOYA 1BUCA 3GM6A 3SXQA 1EGEA 4Q1OA 1EGCA 3D1IA 2YYLA 2WBIA 3EONA 4L1FA 3X0YA 1RX0A 2CX9A 2IX5A 3GNCA 2YYMA 3S7WA 4KTOA 2RDZA 4L3YA 2VR0A 2A1TA 4Q5CA 2REHA 3II9A 1IVHA 1FS9A 5K3GA 3BNFA 1FS7A 3D9FA 2YYKA 2FONA 2JBRA 4RM7A 3SCEA 3UU9A 1R2JA 3RKHA 2E81A 3BNJA 1UDYA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1SIQ A;  4Q17 A;  2DDH A;  2YYI A;  3X0X A;  4X28 C;  2YYJ A;  4OO2 A;  1JQI A;  3UBR A;  3PFD A;  3B96 A;  2JBS A;  1GU6 A;  1UKW A;  4W9U A;  2D29 A;  5K3I A;  3BNH A;  3OIB A;  3OWA A;  2RFQ A;  2R0M A;  4ZYJ A;  3HWC A;  2ZO5 A;  3F29 A;  2IX6 A;  4M9A A;  4JEK A;  1QDB A;  3AFF A;  3OWM A;  3MDE A;  4L3X A;  3SF6 A;  3M9V A;  3P4T A;  2C0U A;  4NXL A;  1U8V A;  1EGD A;  3L1T A;  3D9G A;  3MDD A;  4O5M A;  3FO3 A;  1WS9 A;  4Q5B A;  3MPJ A;  3TOR A;  4X28 A;  2UXW A;  2DVL A;  2JIF A;  5K3J A;  2Z1Q A;  2C12 A;  2R0N A;  5K3H A;  1OAH A;  3MKH A;  3MPI A;  2PG0 A;  2J7A A;  2E80 A;  3BNG A;  1T9G A;  3D6B A;  2YYG A;  4P13 A;  2OR0 A;  2ZAF A;  4KCF A;  4XVX A;  4Q4U A;  4IRN A;  3AFE A;  3MXL A;  4U83 A;  3FCJ A;  4N5F A;  4L3Z A;  1FS8 A;  1IS2 A;  2VIG A;  3TTB A;  2EBA A;  3D9D A;  3EOM A;  3LG1 A;  4Q0T A;  4ZXV A;  3MMO A;  2RF7 A;  3LGQ A;  3NF4 A;  4L38 A;  3GQT A;  3R7K A;  1W07 A;  3D9E A;  1SIR A;  2JBT A;  3SWO A;  4WJY A;  4IV6 A;  4G5E A;  2OT4 A;  4HR3 A;  4DOY A;  1BUC A;  3GM6 A;  3SXQ A;  1EGE A;  4Q1O A;  1EGC A;  3D1I A;  2YYL A;  2WBI A;  3EON A;  4L1F A;  3X0Y A;  1RX0 A;  2CX9 A;  2IX5 A;  3GNC A;  2YYM A;  3S7W A;  4KTO A;  2RDZ A;  4L3Y A;  2VR0 A;  2A1T A;  4Q5C A;  2REH A;  3II9 A;  1IVH A;  1FS9 A;  5K3G A;  3BNF A;  1FS7 A;  3D9F A;  2YYK A;  2FON A;  2JBR A;  4RM7 A;  3SCE A;  3UU9 A;  1R2J A;  3RKH A;  2E81 A;  3BNJ A;  1UDY A; 
#chains in the Genus database with same CATH topology
 1SIQ A;  4HKR A;  4Q17 A;  2DDH A;  2HJN A;  2YYI A;  2AO2 A;  1PI1 A;  3X0X A;  2Q8I A;  3VAD A;  4E01 A;  2EBF X;  5B5W A;  4X28 C;  2YYJ A;  5BRK A;  3C3L A;  2XQR B;  5J71 A;  5M4K A;  4OO2 A;  1JQI A;  3KML A;  3UBR A;  3PFD A;  3B96 A;  2JBS A;  4LQQ B;  4AKG A;  1GU6 A;  2GBB A;  3Q0A A;  1UKW A;  4W9U A;  2D29 A;  5K3I A;  2FP2 A;  2XS1 A;  3OIB A;  2F6L A;  3OWA A;  3BNH A;  3VKH A;  4MP7 A;  2RFQ A;  2R0M A;  4ZYJ A;  1S26 A;  2EBH X;  2CJ7 A;  2XS8 A;  1XFU A;  2AZE A;  2ZKJ A;  3TZ4 A;  3HWC A;  1JM6 A;  4LQS B;  1XFX A;  2BTZ A;  3U33 A;  2E0A A;  2ZO5 A;  4AKI A;  3C2P A;  4G97 A;  1X8Z A;  4FF2 A;  3F29 A;  2OJQ A;  2IX6 A;  1XFW A;  4M9A A;  4JEK A;  1QDB A;  3AFF A;  3OWM A;  4QIC A;  3MDE A;  2OEX A;  3CRK A;  4L3X A;  3SF6 A;  2R05 A;  3CE2 A;  3M9V A;  3P4T A;  4P79 A;  2Q8F A;  2C0U A;  2CJ5 A;  2BU8 A;  4NXL A;  4JIO A;  1Y8N A;  2FP1 A;  2ZDY A;  1XFY A;  1U8V A;  1EGD A;  3L1T A;  3TZ2 A;  3D9G A;  4FZ4 A;  3MDD A;  4O5M A;  3FO3 A;  3DJL A;  1WS9 A;  2YGW A;  4Q5B A;  5GJV E;  3MPJ A;  4HKS A;  3TOR A;  5EZ3 A;  2CJ4 A;  3TZ0 A;  4X28 A;  2UXW A;  3Q24 A;  3C46 A;  2DVL A;  4V25 A;  1SC5 A;  5M4M A;  2JIF A;  5K3J A;  2Z1Q A;  2C12 A;  2R0N A;  5K3H A;  1OAH A;  3MKH A;  5M4P A;  3MPI A;  2PG0 A;  2J7A A;  2E80 A;  3BNG A;  1T9G A;  1X90 A;  3D6B A;  2YYG A;  3X29 A;  4P13 A;  1XG2 B;  2OR0 A;  3D2R A;  2ZAF A;  4KCF A;  4XVX A;  4Q4U A;  4IRN A;  1GKX A;  2BU5 A;  3AFE A;  3MXL A;  4J1V A;  4U83 A;  4KSF A;  3FCJ A;  4N5F A;  4L3Z A;  2BU6 A;  4KS9 A;  1FS8 A;  4F0X A;  1IS2 A;  1PK0 A;  2VIG A;  4MPN A;  3TTB A;  4H7Q A;  2EBA A;  2LFW A;  4H81 A;  4E00 A;  1GJV A;  3D9D A;  2QR4 A;  2R03 A;  3EOM A;  1RJ1 A;  3LG1 A;  4Q0T A;  4V26 A;  2PNR A;  3VKG A;  4MPE A;  4ZXV A;  3MMO A;  2RF7 A;  3LGQ A;  3NF4 A;  1LVC A;  2CJ6 A;  4L38 A;  4FF4 A;  3GQT A;  3R7K A;  1RP3 A;  5M4N A;  1W07 A;  2EC5 A;  1Y8O A;  5GJW E;  4E02 A;  3Q23 A;  2PO4 A;  3D9E A;  1SIR A;  2JBT A;  3SWO A;  3N0R A;  4IV6 A;  4G5E A;  4H85 A;  4HR3 A;  1Y8P A;  4WJY A;  2OT4 A;  4DOY A;  1BUC A;  2R02 A;  3GM6 A;  1SK6 A;  1Y0V A;  5B5V A;  3SXQ A;  2VF1 A;  4AI6 A;  1K93 A;  1EGE A;  1RJ4 A;  3Q22 A;  1GKZ A;  2BU2 A;  4Q1O A;  2ZDX A;  2BU7 A;  1K8T A;  1EGC A;  3D1I A;  2YYL A;  2WBI A;  3EON A;  4L1F A;  4FF1 A;  3X0Y A;  1XFV A;  4DZY A;  1RX0 A;  5B6B A;  2CX9 A;  2IX5 A;  3GNC A;  2YYM A;  4KSA A;  3S7W A;  4FF3 A;  2Q8H A;  4AKH A;  4KTO A;  2RDZ A;  4L3Y A;  1K90 A;  2VR0 A;  2A1T A;  4MP2 A;  4MPC A;  2REH A;  3II9 A;  3CRL A;  1IVH A;  4Q5C A;  3TZ5 A;  1FS9 A;  5K3G A;  1XFZ A;  3BNF A;  4JIZ A;  1FS7 A;  3D9F A;  2YYK A;  2FON A;  2JBR A;  4RM7 A;  1X91 A;  2OEV A;  5BRM A;  1R2J A;  3RKH A;  2E81 A;  3SCE A;  3UU9 A;  2CJ8 A;  5J6A A;  3BNJ A;  1UDY A;  2Q8G A;  1R3B A; 
#chains in the Genus database with same CATH homology
 1SIQ A;  4Q17 A;  2DDH A;  2YYI A;  3X0X A;  4X28 C;  2YYJ A;  4OO2 A;  1JQI A;  3UBR A;  3PFD A;  3B96 A;  2JBS A;  1GU6 A;  1UKW A;  4W9U A;  2D29 A;  5K3I A;  3BNH A;  3OIB A;  3OWA A;  2RFQ A;  2R0M A;  4ZYJ A;  3HWC A;  2ZO5 A;  3F29 A;  2IX6 A;  4M9A A;  4JEK A;  1QDB A;  3AFF A;  3OWM A;  3MDE A;  4L3X A;  3SF6 A;  3M9V A;  3P4T A;  2C0U A;  4NXL A;  1U8V A;  1EGD A;  3L1T A;  3D9G A;  3MDD A;  4O5M A;  3FO3 A;  1WS9 A;  4Q5B A;  3MPJ A;  3TOR A;  4X28 A;  2UXW A;  2DVL A;  2JIF A;  5K3J A;  2Z1Q A;  2C12 A;  2R0N A;  5K3H A;  1OAH A;  3MKH A;  3MPI A;  2PG0 A;  2J7A A;  2E80 A;  3BNG A;  1T9G A;  3D6B A;  2YYG A;  4P13 A;  2OR0 A;  2ZAF A;  4KCF A;  4XVX A;  4Q4U A;  4IRN A;  3AFE A;  3MXL A;  4U83 A;  3FCJ A;  4N5F A;  4L3Z A;  1FS8 A;  1IS2 A;  2VIG A;  3TTB A;  2EBA A;  3D9D A;  3EOM A;  3LG1 A;  4Q0T A;  4ZXV A;  3MMO A;  2RF7 A;  3LGQ A;  3NF4 A;  4L38 A;  3GQT A;  3R7K A;  1W07 A;  3D9E A;  1SIR A;  2JBT A;  3SWO A;  4WJY A;  4IV6 A;  4G5E A;  2OT4 A;  4HR3 A;  4DOY A;  1BUC A;  3GM6 A;  3SXQ A;  1EGE A;  4Q1O A;  1EGC A;  3D1I A;  2YYL A;  2WBI A;  3EON A;  4L1F A;  3X0Y A;  1RX0 A;  2CX9 A;  2IX5 A;  3GNC A;  2YYM A;  3S7W A;  4KTO A;  2RDZ A;  4L3Y A;  2VR0 A;  2A1T A;  4Q5C A;  2REH A;  3II9 A;  1IVH A;  1FS9 A;  5K3G A;  3BNF A;  1FS7 A;  3D9F A;  2YYK A;  2FON A;  2JBR A;  4RM7 A;  3SCE A;  3UU9 A;  1R2J A;  3RKH A;  2E81 A;  3BNJ A;  1UDY A; 
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similar chains in the Genus database (?% sequence similarity)
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