2ZAFA

Mechanistic and structural analyses of the roles of arg409 and asp402 in the reaction of the flavoprotein nitroalkane oxidase
Total Genus 156
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
156
sequence length
430
structure length
430
Chain Sequence
VDFKLSPSQLEARRHAQAFANTVLTKASAEYSTQKDQLSRFQATRPFYREAVRHGLIKAQVPIPLGGTMESLVHESIILEELFAVEPATSITIVATALGLMPVILCDSPSLQEKFLKPFISGEGEPLASLMHSEPNGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNSGGWDYKGADLACVVCRVSDDPSKPQDPNVDPATQIAVLLVTRETIANNKKDAYQILGEPELAGHITTSGPHTRFTEFHVPHENLLCTPGLKAQGLVETAFAMSAALVGAMAIGTARAAFEEALVFAKSDTRGGSKHIIEHQSVADKLIDCKIRLETSRLLVWKAVTTLEDEALEWKVKLEMAMQTKIYTTDVAVECVIDAMKAVGMKSYAKDMSFPRLLNEVMCYPLFDGGNIGLKRRQMQRVMALEDYEPWAATYGS
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Nitroalkane oxidase
publication title Mechanistic and structural analyses of the roles of Arg409 and Asp402 in the reaction of the flavoprotein nitroalkane oxidase.
pubmed doi rcsb
source organism Fusarium oxysporum
molecule tags Oxidoreductase
total genus 156
structure length 430
sequence length 430
chains with identical sequence B, C, D
ec nomenclature ec 1.7.3.1: Nitroalkane oxidase.
pdb deposition date 2007-10-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00441 Acyl-CoA_dh_1 Acyl-CoA dehydrogenase, C-terminal domain
A PF02771 Acyl-CoA_dh_N Acyl-CoA dehydrogenase, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.540.10 Mainly Alpha Orthogonal Bundle Butyryl-Coa Dehydrogenase, subunit A; domain 1 Acyl-CoA dehydrogenase/oxidase, N-terminal domain 2zafA01
1.20.140.10 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A; domain 3 Butyryl-CoA Dehydrogenase, subunit A, domain 3 2zafA03
2.40.110.10 Mainly Beta Beta Barrel Butyryl-CoA Dehydrogenase, subunit A; domain 2 Butyryl-CoA Dehydrogenase, subunit A, domain 2 2zafA02
4KCFA 4HR3A 2YYLA 2A1TA 2JBRA 3BNFA 1SIQA 3OWMA 4P13A 2UXWA 5K3IA 1FS7A 2D29A 4OO2A 2R0NA 1R2JA 4Q1OA 3MXLA 2PG0A 1UKWA 4X28A 4JEKA 3S7WA 3HWCA 2ZAFA 3II9A 2Z1QA 3SXQA 2FONA 2E81A 2YYJA 1SIRA 3F29A 1IS2A 3D9FA 3MDEA 3PFDA 3FCJA 3MPJA 4XVXA 4W9UA 2YYGA 2C12A 4X28C 3D1IA 5K3HA 3D6BA 2J7AA 2VR0A 3GNCA 3FO3A 4U83A 4Q0TA 3SF6A 2JIFA 2CX9A 3BNGA 2RDZA 3GM6A 4L3XA 3UU9A 3B96A 1GU6A 3TTBA 1T9GA 2YYMA 3MPIA 2ZO5A 4Q4UA 2REHA 3L1TA 2R0MA 4M9AA 4L1FA 1FS9A 1QDBA 3TORA 1UDYA 2IX5A 3R7KA 3SWOA 2OR0A 3OWAA 3EONA 3D9DA 2E80A 1BUCA 1OAHA 4IV6A 3AFFA 3P4TA 3RKHA 2JBTA 2JBSA 3LG1A 4WJYA 2WBIA 3SCEA 2RF7A 1EGCA 3UBRA 1FS8A 2DDHA 3MDDA 2IX6A 4Q5CA 4N5FA 3LGQA 1EGDA 4Q5BA 4L3ZA 2EBAA 3OIBA 1W07A 2DVLA 4IRNA 4L3YA 3MMOA 3D9EA 4NXLA 3GQTA 1WS9A 4O5MA 4G5EA 4KTOA 2RFQA 4Q17A 5K3GA 4ZYJA 3MKHA 3NF4A 5K3JA 3X0XA 1U8VA 1RX0A 3M9VA 4L38A 2VIGA 1EGEA 4DOYA 2YYIA 3D9GA 3EOMA 2C0UA 4ZXVA 1IVHA 4RM7A 2YYKA 2OT4A 3AFEA 3BNJA 1JQIA 3X0YA 3BNHA
chains in the Genus database with same CATH superfamily
4KCFA 4HR3A 2BU8A 2YYLA 4J1VA 2A1TA 2JBRA 3BNFA 1SIQA 4AI6A 5B5VA 3OWMA 3Q0AA 4H85A 3CE2A 3TZ5A 4G97A 5M4MA 4P13A 2VF1A 2EC5A 1XG2B 3Q22A 2BU6A 2UXWA 5K3IA 1FS7A 2YGWA 2D29A 4MPNA 4OO2A 2R0NA 1R2JA 1PK0A 3CRLA 4Q1OA 3MXLA 2PG0A 1UKWA 4X28A 4JEKA 3S7WA 3HWCA 2ZAFA 1SC5A 2XQRB 1JM6A 4F0XA 3II9A 2Z1QA 3SXQA 2FONA 1Y8OA 2E81A 1SIRA 2YYJA 3F29A 4H7QA 2Q8GA 4DZYA 4FF1A 1LVCA 1IS2A 3D9FA 3MDEA 4KSAA 3PFDA 3Q24A 4KS9A 3FCJA 4E01A 3MPJA 4JIZA 4MP7A 5J71A 3TZ2A 4XVXA 2CJ6A 1XFXA 5B6BA 2CJ8A 5GJVE 4W9UA 3Q23A 2YYGA 2AZEA 1XFUA 2C12A 1Y8NA 4LQQB 4X28C 2BTZA 1S26A 2R03A 2OEVA 1XFZA 3D1IA 5K3HA 1Y8PA 3D6BA 1SK6A 2J7AA 5M4KA 2VR0A 2Q8HA 3GNCA 3FO3A 2CJ7A 4U83A 4MP2A 4Q0TA 2QR4A 3SF6A 2Q8IA 2FP2A 2PNRA 5M4PA 2CJ5A 2ZDXA 2JIFA 3C46A 2CX9A 1GKXA 3BNGA 2RDZA 3GM6A 4FZ4A 4L3XA 5EZ3A 2XS8A 1K90A 3UU9A 3B96A 1GU6A 4V25A 1T9GA 3TTBA 4FF3A 1X90A 3MPIA 1K8TA 2BU5A 2YYMA 2ZKJA 2ZO5A 1GKZA 4Q4UA 2REHA 3L1TA 1XFYA 2R0MA 4M9AA 4L1FA 1FS9A 1QDBA 3TZ0A 3X29A 3TORA 2Q8FA 2OEXA 1UDYA 2IX5A 3R7KA 3SWOA 2OR0A 3OWAA 3EONA 3DJLA 5J6AA 3D9DA 2E80A 4AKHA 2GBBA 1BUCA 1OAHA 4FF4A 4HKSA 4IV6A 3AFFA 3P4TA 1Y0VA 3N0RA 3RKHA 3TZ4A 4P79A 2JBTA 2JBSA 3LG1A 1RJ4A 3VKHA 4QICA 4AKGA 4WJYA 2WBIA 4MPCA 3SCEA 4E02A 4E00A 3VKGA 2ZDYA 4V26A 2RF7A 1XFWA 1EGCA 3UBRA 2R05A 2FP1A 3KMLA 1FS8A 2DDHA 3MDDA 2E0AA 5M4NA 5BRKA 1X8ZA 2EBHX 2IX6A 4Q5CA 4N5FA 3LGQA 1EGDA 1GJVA 1X91A 4Q5BA 4LQSB 2BU7A 2EBFX 2LFWA 2EBAA 3D2RA 4L3ZA 2OJQA 4FF2A 3OIBA 4KSFA 2F6LA 1W07A 2DVLA 4IRNA 1XFVA 3CRKA 3MMOA 4L3YA 3D9EA 4NXLA 3GQTA 1WS9A 4O5MA 4G5EA 4KTOA 2RFQA 4Q17A 5K3GA 4ZYJA 1RP3A 3MKHA 3NF4A 5K3JA 3X0XA 2PO4A 3U33A 2OT4A 1U8VA 1RX0A 3M9VA 2AO2A 2BU2A 2HJNA 2R02A 4L38A 2VIGA 1R3BA 5BRMA 4AKIA 4HKRA 1EGEA 4DOYA 1RJ1A 3D9GA 2YYIA 3C2PA 2XS1A 1PI1A 3EOMA 2C0UA 4ZXVA 3VADA 5B5WA 1IVHA 1K93A 5GJWE 4RM7A 2YYKA 2CJ4A 3AFEA 3BNJA 1JQIA 3X0YA 3BNHA 4H81A 4MPEA 3C3LA 4JIOA
chains in the Genus database with same CATH topology
4KCFA 4HR3A 2YYLA 2A1TA 2JBRA 3BNFA 1SIQA 3OWMA 4P13A 2UXWA 5K3IA 1FS7A 2D29A 4OO2A 2R0NA 1R2JA 4Q1OA 3MXLA 2PG0A 1UKWA 4X28A 4JEKA 3S7WA 3HWCA 2ZAFA 3II9A 2Z1QA 3SXQA 2FONA 2E81A 2YYJA 1SIRA 3F29A 1IS2A 3D9FA 3MDEA 3PFDA 3FCJA 3MPJA 4XVXA 4W9UA 2YYGA 2C12A 4X28C 3D1IA 5K3HA 3D6BA 2J7AA 2VR0A 3GNCA 3FO3A 4U83A 4Q0TA 3SF6A 2JIFA 2CX9A 3BNGA 2RDZA 3GM6A 4L3XA 3UU9A 3B96A 1GU6A 3TTBA 1T9GA 2YYMA 3MPIA 2ZO5A 4Q4UA 2REHA 3L1TA 2R0MA 4M9AA 4L1FA 1FS9A 1QDBA 3TORA 1UDYA 2IX5A 3R7KA 3SWOA 2OR0A 3OWAA 3EONA 3D9DA 2E80A 1BUCA 1OAHA 4IV6A 3AFFA 3P4TA 3RKHA 2JBTA 2JBSA 3LG1A 4WJYA 2WBIA 3SCEA 2RF7A 1EGCA 3UBRA 1FS8A 2DDHA 3MDDA 2IX6A 4Q5CA 4N5FA 3LGQA 1EGDA 4Q5BA 4L3ZA 2EBAA 3OIBA 1W07A 2DVLA 4IRNA 4L3YA 3MMOA 3D9EA 4NXLA 3GQTA 1WS9A 4O5MA 4G5EA 4KTOA 2RFQA 4Q17A 5K3GA 4ZYJA 3MKHA 3NF4A 5K3JA 3X0XA 1U8VA 1RX0A 3M9VA 4L38A 2VIGA 1EGEA 4DOYA 2YYIA 3D9GA 3EOMA 2C0UA 4ZXVA 1IVHA 4RM7A 2YYKA 2OT4A 3AFEA 3BNJA 1JQIA 3X0YA 3BNHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4KCF A;  4HR3 A;  2YYL A;  2A1T A;  2JBR A;  3BNF A;  1SIQ A;  3OWM A;  4P13 A;  2UXW A;  5K3I A;  1FS7 A;  2D29 A;  4OO2 A;  2R0N A;  1R2J A;  4Q1O A;  3MXL A;  2PG0 A;  1UKW A;  4X28 A;  4JEK A;  3S7W A;  3HWC A;  2ZAF A;  3II9 A;  2Z1Q A;  3SXQ A;  2FON A;  2E81 A;  2YYJ A;  1SIR A;  3F29 A;  1IS2 A;  3D9F A;  3MDE A;  3PFD A;  3FCJ A;  3MPJ A;  4XVX A;  4W9U A;  2YYG A;  2C12 A;  4X28 C;  3D1I A;  5K3H A;  3D6B A;  2J7A A;  2VR0 A;  3GNC A;  3FO3 A;  4U83 A;  4Q0T A;  3SF6 A;  2JIF A;  2CX9 A;  3BNG A;  2RDZ A;  3GM6 A;  4L3X A;  3UU9 A;  3B96 A;  1GU6 A;  3TTB A;  1T9G A;  2YYM A;  3MPI A;  2ZO5 A;  4Q4U A;  2REH A;  3L1T A;  2R0M A;  4M9A A;  4L1F A;  1FS9 A;  1QDB A;  3TOR A;  1UDY A;  2IX5 A;  3R7K A;  3SWO A;  2OR0 A;  3OWA A;  3EON A;  3D9D A;  2E80 A;  1BUC A;  1OAH A;  4IV6 A;  3AFF A;  3P4T A;  3RKH A;  2JBT A;  2JBS A;  3LG1 A;  4WJY A;  2WBI A;  3SCE A;  2RF7 A;  1EGC A;  3UBR A;  1FS8 A;  2DDH A;  3MDD A;  2IX6 A;  4Q5C A;  4N5F A;  3LGQ A;  1EGD A;  4Q5B A;  4L3Z A;  2EBA A;  3OIB A;  1W07 A;  2DVL A;  4IRN A;  4L3Y A;  3MMO A;  3D9E A;  4NXL A;  3GQT A;  1WS9 A;  4O5M A;  4G5E A;  4KTO A;  2RFQ A;  4Q17 A;  5K3G A;  4ZYJ A;  3MKH A;  3NF4 A;  5K3J A;  3X0X A;  1U8V A;  1RX0 A;  3M9V A;  4L38 A;  2VIG A;  1EGE A;  4DOY A;  2YYI A;  3D9G A;  3EOM A;  2C0U A;  4ZXV A;  1IVH A;  4RM7 A;  2YYK A;  2OT4 A;  3AFE A;  3BNJ A;  1JQI A;  3X0Y A;  3BNH A; 
#chains in the Genus database with same CATH topology
 4KCF A;  4HR3 A;  2BU8 A;  2YYL A;  4J1V A;  2A1T A;  2JBR A;  3BNF A;  1SIQ A;  4AI6 A;  5B5V A;  3OWM A;  3Q0A A;  4H85 A;  3CE2 A;  3TZ5 A;  4G97 A;  5M4M A;  4P13 A;  2VF1 A;  2EC5 A;  1XG2 B;  3Q22 A;  2BU6 A;  2UXW A;  5K3I A;  1FS7 A;  2YGW A;  2D29 A;  4MPN A;  4OO2 A;  2R0N A;  1R2J A;  1PK0 A;  3CRL A;  4Q1O A;  3MXL A;  2PG0 A;  1UKW A;  4X28 A;  4JEK A;  3S7W A;  3HWC A;  2ZAF A;  1SC5 A;  2XQR B;  1JM6 A;  4F0X A;  3II9 A;  2Z1Q A;  3SXQ A;  2FON A;  1Y8O A;  2E81 A;  1SIR A;  2YYJ A;  3F29 A;  4H7Q A;  2Q8G A;  4DZY A;  4FF1 A;  1LVC A;  1IS2 A;  3D9F A;  3MDE A;  4KSA A;  3PFD A;  3Q24 A;  4KS9 A;  3FCJ A;  4E01 A;  3MPJ A;  4JIZ A;  4MP7 A;  5J71 A;  3TZ2 A;  4XVX A;  2CJ6 A;  1XFX A;  5B6B A;  2CJ8 A;  5GJV E;  4W9U A;  3Q23 A;  2YYG A;  2AZE A;  1XFU A;  2C12 A;  1Y8N A;  4LQQ B;  4X28 C;  2BTZ A;  1S26 A;  2R03 A;  2OEV A;  1XFZ A;  3D1I A;  5K3H A;  1Y8P A;  3D6B A;  1SK6 A;  2J7A A;  5M4K A;  2VR0 A;  2Q8H A;  3GNC A;  3FO3 A;  2CJ7 A;  4U83 A;  4MP2 A;  4Q0T A;  2QR4 A;  3SF6 A;  2Q8I A;  2FP2 A;  2PNR A;  5M4P A;  2CJ5 A;  2ZDX A;  2JIF A;  3C46 A;  2CX9 A;  1GKX A;  3BNG A;  2RDZ A;  3GM6 A;  4FZ4 A;  4L3X A;  5EZ3 A;  2XS8 A;  1K90 A;  3UU9 A;  3B96 A;  1GU6 A;  4V25 A;  1T9G A;  3TTB A;  4FF3 A;  1X90 A;  3MPI A;  1K8T A;  2BU5 A;  2YYM A;  2ZKJ A;  2ZO5 A;  1GKZ A;  4Q4U A;  2REH A;  3L1T A;  1XFY A;  2R0M A;  4M9A A;  4L1F A;  1FS9 A;  1QDB A;  3TZ0 A;  3X29 A;  3TOR A;  2Q8F A;  2OEX A;  1UDY A;  2IX5 A;  3R7K A;  3SWO A;  2OR0 A;  3OWA A;  3EON A;  3DJL A;  5J6A A;  3D9D A;  2E80 A;  4AKH A;  2GBB A;  1BUC A;  1OAH A;  4FF4 A;  4HKS A;  4IV6 A;  3AFF A;  3P4T A;  1Y0V A;  3N0R A;  3RKH A;  3TZ4 A;  4P79 A;  2JBT A;  2JBS A;  3LG1 A;  1RJ4 A;  3VKH A;  4QIC A;  4AKG A;  4WJY A;  2WBI A;  4MPC A;  3SCE A;  4E02 A;  4E00 A;  3VKG A;  2ZDY A;  4V26 A;  2RF7 A;  1XFW A;  1EGC A;  3UBR A;  2R05 A;  2FP1 A;  3KML A;  1FS8 A;  2DDH A;  3MDD A;  2E0A A;  5M4N A;  5BRK A;  1X8Z A;  2EBH X;  2IX6 A;  4Q5C A;  4N5F A;  3LGQ A;  1EGD A;  1GJV A;  1X91 A;  4Q5B A;  4LQS B;  2BU7 A;  2EBF X;  2LFW A;  2EBA A;  3D2R A;  4L3Z A;  2OJQ A;  4FF2 A;  3OIB A;  4KSF A;  2F6L A;  1W07 A;  2DVL A;  4IRN A;  1XFV A;  3CRK A;  3MMO A;  4L3Y A;  3D9E A;  4NXL A;  3GQT A;  1WS9 A;  4O5M A;  4G5E A;  4KTO A;  2RFQ A;  4Q17 A;  5K3G A;  4ZYJ A;  1RP3 A;  3MKH A;  3NF4 A;  5K3J A;  3X0X A;  2PO4 A;  3U33 A;  2OT4 A;  1U8V A;  1RX0 A;  3M9V A;  2AO2 A;  2BU2 A;  2HJN A;  2R02 A;  4L38 A;  2VIG A;  1R3B A;  5BRM A;  4AKI A;  4HKR A;  1EGE A;  4DOY A;  1RJ1 A;  3D9G A;  2YYI A;  3C2P A;  2XS1 A;  1PI1 A;  3EOM A;  2C0U A;  4ZXV A;  3VAD A;  5B5W A;  1IVH A;  1K93 A;  5GJW E;  4RM7 A;  2YYK A;  2CJ4 A;  3AFE A;  3BNJ A;  1JQI A;  3X0Y A;  3BNH A;  4H81 A;  4MPE A;  3C3L A;  4JIO A; 
#chains in the Genus database with same CATH homology
 4KCF A;  4HR3 A;  2YYL A;  2A1T A;  2JBR A;  3BNF A;  1SIQ A;  3OWM A;  4P13 A;  2UXW A;  5K3I A;  1FS7 A;  2D29 A;  4OO2 A;  2R0N A;  1R2J A;  4Q1O A;  3MXL A;  2PG0 A;  1UKW A;  4X28 A;  4JEK A;  3S7W A;  3HWC A;  2ZAF A;  3II9 A;  2Z1Q A;  3SXQ A;  2FON A;  2E81 A;  2YYJ A;  1SIR A;  3F29 A;  1IS2 A;  3D9F A;  3MDE A;  3PFD A;  3FCJ A;  3MPJ A;  4XVX A;  4W9U A;  2YYG A;  2C12 A;  4X28 C;  3D1I A;  5K3H A;  3D6B A;  2J7A A;  2VR0 A;  3GNC A;  3FO3 A;  4U83 A;  4Q0T A;  3SF6 A;  2JIF A;  2CX9 A;  3BNG A;  2RDZ A;  3GM6 A;  4L3X A;  3UU9 A;  3B96 A;  1GU6 A;  3TTB A;  1T9G A;  2YYM A;  3MPI A;  2ZO5 A;  4Q4U A;  2REH A;  3L1T A;  2R0M A;  4M9A A;  4L1F A;  1FS9 A;  1QDB A;  3TOR A;  1UDY A;  2IX5 A;  3R7K A;  3SWO A;  2OR0 A;  3OWA A;  3EON A;  3D9D A;  2E80 A;  1BUC A;  1OAH A;  4IV6 A;  3AFF A;  3P4T A;  3RKH A;  2JBT A;  2JBS A;  3LG1 A;  4WJY A;  2WBI A;  3SCE A;  2RF7 A;  1EGC A;  3UBR A;  1FS8 A;  2DDH A;  3MDD A;  2IX6 A;  4Q5C A;  4N5F A;  3LGQ A;  1EGD A;  4Q5B A;  4L3Z A;  2EBA A;  3OIB A;  1W07 A;  2DVL A;  4IRN A;  4L3Y A;  3MMO A;  3D9E A;  4NXL A;  3GQT A;  1WS9 A;  4O5M A;  4G5E A;  4KTO A;  2RFQ A;  4Q17 A;  5K3G A;  4ZYJ A;  3MKH A;  3NF4 A;  5K3J A;  3X0X A;  1U8V A;  1RX0 A;  3M9V A;  4L38 A;  2VIG A;  1EGE A;  4DOY A;  2YYI A;  3D9G A;  3EOM A;  2C0U A;  4ZXV A;  1IVH A;  4RM7 A;  2YYK A;  2OT4 A;  3AFE A;  3BNJ A;  1JQI A;  3X0Y A;  3BNH A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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