2C0UA

Crystal structure of a covalent complex of nitroalkane oxidase trapped during substrate turnover
Total Genus 143
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
143
sequence length
430
structure length
430
Chain Sequence
b'VDFKLSPSQLEARRHAQAFANTVLTKASAEYSTQKDQLSRFQATRPFYREAVRHGLIKAQVPIPLGGTMESLVHESIILEELFAVEPATSITIVATALGLMPVILCDSPSLQEKFLKPFISGEGEPLASLMHSEPNGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNSGGWDYKGADLACVVCRVSDDPSKPQDPNVDPATQIAVLLVTRETIANNKKDAYQILGEPELAGHITTSGPHTRFTEFHVPHENLLCTPGLKAQGLVETAFAMSAALVGAMAIGTARAAFEEALVFAKSDTRGGSKHIIEHQSVADKLIDCKIRLETSRLLVWKAVTTLEDEALEWKVKLEMAMQTKIYTTDVAVECVIDAMKAVGMKSYAKDMSFPRLLNEVMCYPLFDGGNIGLRRRQMQRVMALEDYEPWAATYGS'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords NITROALKANE OXIDASE
publication title Crystal Structures of Nitroalkane Oxidase: Insights Into the Reaction Mechanism from a Covalent Complex of the Flavoenzyme Trapped During Turnover.
pubmed doi rcsb
source organism Fusarium oxysporum
molecule tags Oxidoreductase
total genus 143
structure length 430
sequence length 430
chains with identical sequence B, C, D
ec nomenclature ec 1.7.3.1: Nitroalkane oxidase.
pdb deposition date 2005-09-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00441 Acyl-CoA_dh_1 Acyl-CoA dehydrogenase, C-terminal domain
A PF02771 Acyl-CoA_dh_N Acyl-CoA dehydrogenase, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.540.10 Mainly Alpha Orthogonal Bundle Butyryl-Coa Dehydrogenase, subunit A; domain 1 Acyl-CoA dehydrogenase/oxidase, N-terminal domain 2c0uA01
1.20.140.10 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A; domain 3 Butyryl-CoA Dehydrogenase, subunit A, domain 3 2c0uA03
2.40.110.10 Mainly Beta Beta Barrel Butyryl-CoA Dehydrogenase, subunit A; domain 2 Butyryl-CoA Dehydrogenase, subunit A, domain 2 2c0uA02
3SXQA 3RKHA 3D9DA 5K3JA 4L3YA 2EBAA 3MXLA 3MDEA 4G5EA 4L38A 4WJYA 1UKWA 2VIGA 3BNHA 1R2JA 2JBTA 2JIFA 2Z1QA 4JEKA 3BNFA 2DDHA 3BNJA 3X0XA 2UXWA 2RFQA 3EOMA 4O5MA 3SCEA 3X0YA 3L1TA 3OIBA 2D29A 1U8VA 3AFFA 2YYMA 2ZO5A 4L1FA 2YYKA 3FO3A 4IRNA 3AFEA 2REHA 4RM7A 5K3GA 4Q5CA 4DOYA 4ZXVA 4X28A 2YYLA 3GM6A 3R7KA 2C12A 2YYIA 1SIRA 3D9FA 4Q4UA 1BUCA 2J7AA 3MPJA 2RDZA 4Q1OA 4N5FA 2ZAFA 5K3HA 2IX6A 3F29A 1IVHA 2JBRA 2WBIA 1QDBA 4P13A 3SWOA 4Q5BA 4Q17A 4L3ZA 3HWCA 4OO2A 4W9UA 2OT4A 3D9GA 3D6BA 4XVXA 4M9AA 3LG1A 3M9VA 2E80A 2CX9A 1RX0A 1JQIA 1EGDA 3MMOA 2A1TA 2FONA 2YYJA 3MPIA 3D9EA 4HR3A 2YYGA 3SF6A 4L3XA 1T9GA 3EONA 3LGQA 4NXLA 3NF4A 1WS9A 4Q0TA 3PFDA 2IX5A 3UBRA 1OAHA 4ZYJA 3TORA 1UDYA 2R0MA 3MKHA 3UU9A 2DVLA 2R0NA 2RF7A 1IS2A 3S7WA 2JBSA 4X28C 3MDDA 4IV6A 3GNCA 1W07A 3P4TA 2E81A 3TTBA 1FS7A 3FCJA 3GQTA 1EGCA 4U83A 1SIQA 5K3IA 1EGEA 3II9A 3OWMA 2OR0A 2VR0A 3OWAA 4KTOA 2PG0A 1FS8A 1GU6A 3D1IA 2C0UA 4KCFA 1FS9A 3B96A 3BNGA
chains in the Genus database with same CATH superfamily
2HJNA 3SXQA 3RKHA 3D9DA 3Q22A 5K3JA 4L3YA 2Q8GA 2EBAA 3TZ5A 4V26A 2VF1A 5J71A 1XFUA 3MXLA 3MDEA 1RJ1A 1XFWA 2GBBA 4G5EA 4F0XA 5M4KA 4L38A 4WJYA 4J1VA 3N0RA 1UKWA 2VIGA 3BNHA 1R2JA 3C2PA 2JBTA 2JIFA 2Z1QA 4JEKA 3BNFA 4G97A 4KSAA 4MP7A 2EBHX 1RJ4A 4AKIA 4E02A 2DDHA 4AKGA 2R02A 1Y8PA 3X0XA 3BNJA 1PK0A 2UXWA 2RFQA 3EOMA 4O5MA 2F6LA 3X0YA 3KMLA 4LQQB 5GJWE 2QR4A 3L1TA 3SCEA 4P79A 3OIBA 2D29A 1U8VA 3AFFA 2YYMA 1XFVA 2ZO5A 2Q8HA 4H7QA 2BU8A 4L1FA 2YYKA 3FO3A 1SC5A 4IRNA 3AFEA 2ZDYA 1K93A 2REHA 4RM7A 1K90A 3CE2A 4FF4A 5K3GA 4Q5CA 4DOYA 4AKHA 4ZXVA 4X28A 2YYLA 3GM6A 4E01A 3R7KA 2C12A 4FZ4A 1Y0VA 2YYIA 5J6AA 1SIRA 3D9FA 2EBFX 3VADA 1X91A 4AI6A 4Q4UA 4V25A 1BUCA 2J7AA 2R05A 3MPJA 2RDZA 5EZ3A 4JIOA 2OEVA 4Q1OA 4N5FA 4QICA 1PI1A 4KS9A 3Q23A 2ZAFA 2BTZA 5K3HA 2IX6A 3F29A 1S26A 1IVHA 1X90A 3TZ2A 2JBRA 2WBIA 4HKRA 4FF1A 5M4MA 1QDBA 4P13A 3SWOA 1SK6A 2OJQA 2BU5A 4Q5BA 4Q17A 4L3ZA 3HWCA 4OO2A 4W9UA 4E00A 2AZEA 2PNRA 2OT4A 2PO4A 4KSFA 2ZDXA 2XS1A 2YGWA 3D9GA 5M4NA 1RP3A 5BRKA 3D6BA 4XVXA 4M9AA 1XG2B 2BU7A 2LFWA 3M9VA 3LG1A 2E80A 5M4PA 2CX9A 1RX0A 1JQIA 2CJ6A 1EGDA 2XS8A 2A1TA 2FONA 3MMOA 2CJ4A 2R03A 1GJVA 2XQRB 2YYJA 4MPEA 3MPIA 3D9EA 4HR3A 2BU6A 2CJ8A 3SF6A 2YYGA 4MPNA 1XFYA 3X29A 4L3XA 1T9GA 3EONA 3LGQA 3TZ0A 4DZYA 2Q8IA 4FF3A 2AO2A 4NXLA 2EC5A 3NF4A 1XFXA 1WS9A 1R3BA 4Q0TA 3C3LA 3PFDA 2IX5A 3UBRA 1OAHA 3U33A 4ZYJA 3TORA 1UDYA 2R0MA 5GJVE 1Y8OA 3CRKA 3MKHA 4HKSA 2ZKJA 5B6BA 3UU9A 2OEXA 4MPCA 3TZ4A 5B5VA 2Q8FA 2DVLA 2R0NA 2RF7A 1IS2A 5BRMA 3S7WA 2JBSA 2E0AA 4H81A 4X28C 3C46A 3MDDA 4IV6A 3GNCA 3Q24A 2FP1A 2CJ5A 1W07A 3P4TA 1GKXA 4FF2A 1XFZA 3DJLA 2E81A 3TTBA 2BU2A 1X8ZA 1FS7A 4JIZA 1GKZA 4LQSB 3FCJA 3GQTA 1EGCA 4U83A 1SIQA 2CJ7A 5K3IA 1EGEA 3II9A 3OWMA 3D2RA 2OR0A 5B5WA 2VR0A 1Y8NA 3CRLA 3OWAA 3Q0AA 3VKGA 4KTOA 4MP2A 2PG0A 1FS8A 3VKHA 1GU6A 4H85A 1K8TA 2FP2A 3D1IA 2C0UA 1LVCA 4KCFA 1FS9A 3B96A 1JM6A 3BNGA
chains in the Genus database with same CATH topology
3SXQA 3RKHA 3D9DA 5K3JA 4L3YA 2EBAA 3MXLA 3MDEA 4G5EA 4L38A 4WJYA 1UKWA 2VIGA 3BNHA 1R2JA 2JBTA 2JIFA 2Z1QA 4JEKA 3BNFA 2DDHA 3BNJA 3X0XA 2UXWA 2RFQA 3EOMA 4O5MA 3SCEA 3X0YA 3L1TA 3OIBA 2D29A 1U8VA 3AFFA 2YYMA 2ZO5A 4L1FA 2YYKA 3FO3A 4IRNA 3AFEA 2REHA 4RM7A 5K3GA 4Q5CA 4DOYA 4ZXVA 4X28A 2YYLA 3GM6A 3R7KA 2C12A 2YYIA 1SIRA 3D9FA 4Q4UA 1BUCA 2J7AA 3MPJA 2RDZA 4Q1OA 4N5FA 2ZAFA 5K3HA 2IX6A 3F29A 1IVHA 2JBRA 2WBIA 1QDBA 4P13A 3SWOA 4Q5BA 4Q17A 4L3ZA 3HWCA 4OO2A 4W9UA 2OT4A 3D9GA 3D6BA 4XVXA 4M9AA 3LG1A 3M9VA 2E80A 2CX9A 1RX0A 1JQIA 1EGDA 3MMOA 2A1TA 2FONA 2YYJA 3MPIA 3D9EA 4HR3A 2YYGA 3SF6A 4L3XA 1T9GA 3EONA 3LGQA 4NXLA 3NF4A 1WS9A 4Q0TA 3PFDA 2IX5A 3UBRA 1OAHA 4ZYJA 3TORA 1UDYA 2R0MA 3MKHA 3UU9A 2DVLA 2R0NA 2RF7A 1IS2A 3S7WA 2JBSA 4X28C 3MDDA 4IV6A 3GNCA 1W07A 3P4TA 2E81A 3TTBA 1FS7A 3FCJA 3GQTA 1EGCA 4U83A 1SIQA 5K3IA 1EGEA 3II9A 3OWMA 2OR0A 2VR0A 3OWAA 4KTOA 2PG0A 1FS8A 1GU6A 3D1IA 2C0UA 4KCFA 1FS9A 3B96A 3BNGA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3SXQ A;  3RKH A;  3D9D A;  5K3J A;  4L3Y A;  2EBA A;  3MXL A;  3MDE A;  4G5E A;  4L38 A;  4WJY A;  1UKW A;  2VIG A;  3BNH A;  1R2J A;  2JBT A;  2JIF A;  2Z1Q A;  4JEK A;  3BNF A;  2DDH A;  3BNJ A;  3X0X A;  2UXW A;  2RFQ A;  3EOM A;  4O5M A;  3SCE A;  3X0Y A;  3L1T A;  3OIB A;  2D29 A;  1U8V A;  3AFF A;  2YYM A;  2ZO5 A;  4L1F A;  2YYK A;  3FO3 A;  4IRN A;  3AFE A;  2REH A;  4RM7 A;  5K3G A;  4Q5C A;  4DOY A;  4ZXV A;  4X28 A;  2YYL A;  3GM6 A;  3R7K A;  2C12 A;  2YYI A;  1SIR A;  3D9F A;  4Q4U A;  1BUC A;  2J7A A;  3MPJ A;  2RDZ A;  4Q1O A;  4N5F A;  2ZAF A;  5K3H A;  2IX6 A;  3F29 A;  1IVH A;  2JBR A;  2WBI A;  1QDB A;  4P13 A;  3SWO A;  4Q5B A;  4Q17 A;  4L3Z A;  3HWC A;  4OO2 A;  4W9U A;  2OT4 A;  3D9G A;  3D6B A;  4XVX A;  4M9A A;  3LG1 A;  3M9V A;  2E80 A;  2CX9 A;  1RX0 A;  1JQI A;  1EGD A;  3MMO A;  2A1T A;  2FON A;  2YYJ A;  3MPI A;  3D9E A;  4HR3 A;  2YYG A;  3SF6 A;  4L3X A;  1T9G A;  3EON A;  3LGQ A;  4NXL A;  3NF4 A;  1WS9 A;  4Q0T A;  3PFD A;  2IX5 A;  3UBR A;  1OAH A;  4ZYJ A;  3TOR A;  1UDY A;  2R0M A;  3MKH A;  3UU9 A;  2DVL A;  2R0N A;  2RF7 A;  1IS2 A;  3S7W A;  2JBS A;  4X28 C;  3MDD A;  4IV6 A;  3GNC A;  1W07 A;  3P4T A;  2E81 A;  3TTB A;  1FS7 A;  3FCJ A;  3GQT A;  1EGC A;  4U83 A;  1SIQ A;  5K3I A;  1EGE A;  3II9 A;  3OWM A;  2OR0 A;  2VR0 A;  3OWA A;  4KTO A;  2PG0 A;  1FS8 A;  1GU6 A;  3D1I A;  2C0U A;  4KCF A;  1FS9 A;  3B96 A;  3BNG A; 
#chains in the Genus database with same CATH topology
 2HJN A;  3SXQ A;  3RKH A;  3D9D A;  3Q22 A;  5K3J A;  4L3Y A;  2Q8G A;  2EBA A;  3TZ5 A;  4V26 A;  2VF1 A;  5J71 A;  1XFU A;  3MXL A;  3MDE A;  1RJ1 A;  1XFW A;  2GBB A;  4G5E A;  4F0X A;  5M4K A;  4L38 A;  4WJY A;  4J1V A;  3N0R A;  1UKW A;  2VIG A;  3BNH A;  1R2J A;  3C2P A;  2JBT A;  2JIF A;  2Z1Q A;  4JEK A;  3BNF A;  4G97 A;  4KSA A;  4MP7 A;  2EBH X;  1RJ4 A;  4AKI A;  4E02 A;  2DDH A;  4AKG A;  2R02 A;  1Y8P A;  3X0X A;  3BNJ A;  1PK0 A;  2UXW A;  2RFQ A;  3EOM A;  4O5M A;  2F6L A;  3X0Y A;  3KML A;  4LQQ B;  5GJW E;  2QR4 A;  3L1T A;  3SCE A;  4P79 A;  3OIB A;  2D29 A;  1U8V A;  3AFF A;  2YYM A;  1XFV A;  2ZO5 A;  2Q8H A;  4H7Q A;  2BU8 A;  4L1F A;  2YYK A;  3FO3 A;  1SC5 A;  4IRN A;  3AFE A;  2ZDY A;  1K93 A;  2REH A;  4RM7 A;  1K90 A;  3CE2 A;  4FF4 A;  5K3G A;  4Q5C A;  4DOY A;  4AKH A;  4ZXV A;  4X28 A;  2YYL A;  3GM6 A;  4E01 A;  3R7K A;  2C12 A;  4FZ4 A;  1Y0V A;  2YYI A;  5J6A A;  1SIR A;  3D9F A;  2EBF X;  3VAD A;  1X91 A;  4AI6 A;  4Q4U A;  4V25 A;  1BUC A;  2J7A A;  2R05 A;  3MPJ A;  2RDZ A;  5EZ3 A;  4JIO A;  2OEV A;  4Q1O A;  4N5F A;  4QIC A;  1PI1 A;  4KS9 A;  3Q23 A;  2ZAF A;  2BTZ A;  5K3H A;  2IX6 A;  3F29 A;  1S26 A;  1IVH A;  1X90 A;  3TZ2 A;  2JBR A;  2WBI A;  4HKR A;  4FF1 A;  5M4M A;  1QDB A;  4P13 A;  3SWO A;  1SK6 A;  2OJQ A;  2BU5 A;  4Q5B A;  4Q17 A;  4L3Z A;  3HWC A;  4OO2 A;  4W9U A;  4E00 A;  2AZE A;  2PNR A;  2OT4 A;  2PO4 A;  4KSF A;  2ZDX A;  2XS1 A;  2YGW A;  3D9G A;  5M4N A;  1RP3 A;  5BRK A;  3D6B A;  4XVX A;  4M9A A;  1XG2 B;  2BU7 A;  2LFW A;  3M9V A;  3LG1 A;  2E80 A;  5M4P A;  2CX9 A;  1RX0 A;  1JQI A;  2CJ6 A;  1EGD A;  2XS8 A;  2A1T A;  2FON A;  3MMO A;  2CJ4 A;  2R03 A;  1GJV A;  2XQR B;  2YYJ A;  4MPE A;  3MPI A;  3D9E A;  4HR3 A;  2BU6 A;  2CJ8 A;  3SF6 A;  2YYG A;  4MPN A;  1XFY A;  3X29 A;  4L3X A;  1T9G A;  3EON A;  3LGQ A;  3TZ0 A;  4DZY A;  2Q8I A;  4FF3 A;  2AO2 A;  4NXL A;  2EC5 A;  3NF4 A;  1XFX A;  1WS9 A;  1R3B A;  4Q0T A;  3C3L A;  3PFD A;  2IX5 A;  3UBR A;  1OAH A;  3U33 A;  4ZYJ A;  3TOR A;  1UDY A;  2R0M A;  5GJV E;  1Y8O A;  3CRK A;  3MKH A;  4HKS A;  2ZKJ A;  5B6B A;  3UU9 A;  2OEX A;  4MPC A;  3TZ4 A;  5B5V A;  2Q8F A;  2DVL A;  2R0N A;  2RF7 A;  1IS2 A;  5BRM A;  3S7W A;  2JBS A;  2E0A A;  4H81 A;  4X28 C;  3C46 A;  3MDD A;  4IV6 A;  3GNC A;  3Q24 A;  2FP1 A;  2CJ5 A;  1W07 A;  3P4T A;  1GKX A;  4FF2 A;  1XFZ A;  3DJL A;  2E81 A;  3TTB A;  2BU2 A;  1X8Z A;  1FS7 A;  4JIZ A;  1GKZ A;  4LQS B;  3FCJ A;  3GQT A;  1EGC A;  4U83 A;  1SIQ A;  2CJ7 A;  5K3I A;  1EGE A;  3II9 A;  3OWM A;  3D2R A;  2OR0 A;  5B5W A;  2VR0 A;  1Y8N A;  3CRL A;  3OWA A;  3Q0A A;  3VKG A;  4KTO A;  4MP2 A;  2PG0 A;  1FS8 A;  3VKH A;  1GU6 A;  4H85 A;  1K8T A;  2FP2 A;  3D1I A;  2C0U A;  1LVC A;  4KCF A;  1FS9 A;  3B96 A;  1JM6 A;  3BNG A; 
#chains in the Genus database with same CATH homology
 3SXQ A;  3RKH A;  3D9D A;  5K3J A;  4L3Y A;  2EBA A;  3MXL A;  3MDE A;  4G5E A;  4L38 A;  4WJY A;  1UKW A;  2VIG A;  3BNH A;  1R2J A;  2JBT A;  2JIF A;  2Z1Q A;  4JEK A;  3BNF A;  2DDH A;  3BNJ A;  3X0X A;  2UXW A;  2RFQ A;  3EOM A;  4O5M A;  3SCE A;  3X0Y A;  3L1T A;  3OIB A;  2D29 A;  1U8V A;  3AFF A;  2YYM A;  2ZO5 A;  4L1F A;  2YYK A;  3FO3 A;  4IRN A;  3AFE A;  2REH A;  4RM7 A;  5K3G A;  4Q5C A;  4DOY A;  4ZXV A;  4X28 A;  2YYL A;  3GM6 A;  3R7K A;  2C12 A;  2YYI A;  1SIR A;  3D9F A;  4Q4U A;  1BUC A;  2J7A A;  3MPJ A;  2RDZ A;  4Q1O A;  4N5F A;  2ZAF A;  5K3H A;  2IX6 A;  3F29 A;  1IVH A;  2JBR A;  2WBI A;  1QDB A;  4P13 A;  3SWO A;  4Q5B A;  4Q17 A;  4L3Z A;  3HWC A;  4OO2 A;  4W9U A;  2OT4 A;  3D9G A;  3D6B A;  4XVX A;  4M9A A;  3LG1 A;  3M9V A;  2E80 A;  2CX9 A;  1RX0 A;  1JQI A;  1EGD A;  3MMO A;  2A1T A;  2FON A;  2YYJ A;  3MPI A;  3D9E A;  4HR3 A;  2YYG A;  3SF6 A;  4L3X A;  1T9G A;  3EON A;  3LGQ A;  4NXL A;  3NF4 A;  1WS9 A;  4Q0T A;  3PFD A;  2IX5 A;  3UBR A;  1OAH A;  4ZYJ A;  3TOR A;  1UDY A;  2R0M A;  3MKH A;  3UU9 A;  2DVL A;  2R0N A;  2RF7 A;  1IS2 A;  3S7W A;  2JBS A;  4X28 C;  3MDD A;  4IV6 A;  3GNC A;  1W07 A;  3P4T A;  2E81 A;  3TTB A;  1FS7 A;  3FCJ A;  3GQT A;  1EGC A;  4U83 A;  1SIQ A;  5K3I A;  1EGE A;  3II9 A;  3OWM A;  2OR0 A;  2VR0 A;  3OWA A;  4KTO A;  2PG0 A;  1FS8 A;  1GU6 A;  3D1I A;  2C0U A;  4KCF A;  1FS9 A;  3B96 A;  3BNG A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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