2C0UA

Crystal structure of a covalent complex of nitroalkane oxidase trapped during substrate turnover
Total Genus 143
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
143
sequence length
430
structure length
430
Chain Sequence
VDFKLSPSQLEARRHAQAFANTVLTKASAEYSTQKDQLSRFQATRPFYREAVRHGLIKAQVPIPLGGTMESLVHESIILEELFAVEPATSITIVATALGLMPVILCDSPSLQEKFLKPFISGEGEPLASLMHSEPNGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNSGGWDYKGADLACVVCRVSDDPSKPQDPNVDPATQIAVLLVTRETIANNKKDAYQILGEPELAGHITTSGPHTRFTEFHVPHENLLCTPGLKAQGLVETAFAMSAALVGAMAIGTARAAFEEALVFAKSDTRGGSKHIIEHQSVADKLIDCKIRLETSRLLVWKAVTTLEDEALEWKVKLEMAMQTKIYTTDVAVECVIDAMKAVGMKSYAKDMSFPRLLNEVMCYPLFDGGNIGLRRRQMQRVMALEDYEPWAATYGS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords NITROALKANE OXIDASE
publication title Crystal Structures of Nitroalkane Oxidase: Insights Into the Reaction Mechanism from a Covalent Complex of the Flavoenzyme Trapped During Turnover.
pubmed doi rcsb
source organism Fusarium oxysporum
molecule tags Oxidoreductase
total genus 143
structure length 430
sequence length 430
chains with identical sequence B, C, D
ec nomenclature ec 1.7.3.1: Nitroalkane oxidase.
pdb deposition date 2005-09-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00441 Acyl-CoA_dh_1 Acyl-CoA dehydrogenase, C-terminal domain
A PF02771 Acyl-CoA_dh_N Acyl-CoA dehydrogenase, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.540.10 Mainly Alpha Orthogonal Bundle Butyryl-Coa Dehydrogenase, subunit A; domain 1 Acyl-CoA dehydrogenase/oxidase, N-terminal domain 2c0uA01
1.20.140.10 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A; domain 3 Butyryl-CoA Dehydrogenase, subunit A, domain 3 2c0uA03
2.40.110.10 Mainly Beta Beta Barrel Butyryl-CoA Dehydrogenase, subunit A; domain 2 Butyryl-CoA Dehydrogenase, subunit A, domain 2 2c0uA02
4Q17A 2DVLA 3B96A 1FS7A 5K3HA 3D9GA 1SIRA 2ZO5A 4L3YA 4Q1OA 2R0NA 2OR0A 4Q0TA 3L1TA 3D1IA 3SXQA 3SF6A 4RM7A 1JQIA 3M9VA 2J7AA 3UU9A 3MPIA 3MPJA 2UXWA 1WS9A 4X28A 4NXLA 2WBIA 4IV6A 2DDHA 1GU6A 2VR0A 1EGCA 2EBAA 3LGQA 1FS8A 4L3XA 2R0MA 2C0UA 1U8VA 2Z1QA 5K3GA 4O5MA 4KTOA 2YYLA 3MKHA 4L38A 2YYMA 3D6BA 3X0YA 2RDZA 2RF7A 4HR3A 2REHA 4L3ZA 3AFFA 2FONA 3SCEA 4Q5BA 3S7WA 3FO3A 1UKWA 2CX9A 2VIGA 1W07A 3AFEA 3FCJA 3X0XA 2YYJA 2OT4A 3MXLA 3GNCA 4N5FA 2JBSA 2RFQA 4DOYA 4Q4UA 1QDBA 3D9DA 3HWCA 1IVHA 1UDYA 3II9A 3LG1A 2YYIA 1R2JA 5K3JA 4XVXA 4IRNA 2D29A 1BUCA 3D9FA 3PFDA 3GM6A 4L1FA 2C12A 3MMOA 2PG0A 1IS2A 2E81A 2E80A 4G5EA 2JBTA 4W9UA 2YYGA 4WJYA 3MDDA 3P4TA 5K3IA 4Q5CA 3OWAA 4M9AA 2ZAFA 2IX6A 2YYKA 4OO2A 3BNHA 3D9EA 3BNFA 2JIFA 1EGEA 2JBRA 4X28C 3EONA 3R7KA 3BNGA 3TTBA 1EGDA 3OWMA 1T9GA 1OAHA 3EOMA 3OIBA 2IX5A 3F29A 1SIQA 3NF4A 3GQTA 1FS9A 3RKHA 4ZXVA 3TORA 1RX0A 2A1TA 3MDEA 3BNJA 4P13A 4ZYJA 3SWOA 4U83A 3UBRA 4KCFA 4JEKA
chains in the Genus database with same CATH superfamily
3Q0AA 4Q17A 4FF3A 4JIZA 2DVLA 3B96A 1FS7A 3TZ2A 5K3HA 3D9GA 4F0XA 1SIRA 2ZO5A 4L3YA 4Q1OA 4J1VA 2R0NA 2OR0A 4HKSA 4Q0TA 2Q8HA 3C2PA 2XS8A 3L1TA 2PNRA 3D1IA 4LQSB 3SXQA 3SF6A 2Q8GA 4RM7A 1JQIA 1JM6A 4AI6A 3M9VA 4FF2A 2J7AA 3UU9A 5M4MA 1K93A 5M4PA 3MPIA 3MPJA 1RJ4A 2UXWA 1WS9A 4X28A 1X91A 4NXLA 4MPCA 2CJ7A 4E02A 5BRMA 2WBIA 4IV6A 2DDHA 1GU6A 1XFZA 1GKZA 2VR0A 5GJVE 1EGCA 2EBAA 4MPEA 5GJWE 3LGQA 1FS8A 4QICA 4L3XA 2YGWA 2R0MA 3CRKA 2C0UA 1U8VA 2Z1QA 1XFXA 5K3GA 1X90A 4O5MA 4AKIA 4KTOA 4AKHA 2YYLA 3MKHA 1XG2B 2BU5A 2CJ6A 2YYMA 3D6BA 3X0YA 1GJVA 2CJ4A 4H85A 4L38A 4V26A 2RDZA 2RF7A 2PO4A 4HR3A 2REHA 4E01A 4L3ZA 3AFFA 2FONA 2R02A 3SCEA 4Q5BA 3S7WA 3FO3A 1UKWA 2CX9A 3VADA 2VIGA 3N0RA 1W07A 3AFEA 3FCJA 5B5WA 3X0XA 2FP2A 2OEXA 5B6BA 1Y8PA 2YYJA 3TZ4A 5EZ3A 2Q8FA 2BU6A 3KMLA 4MPNA 2OT4A 4G97A 4DZYA 3X29A 3MXLA 3GNCA 4N5FA 1XFYA 3CRLA 2JBSA 2RFQA 4DOYA 1XFWA 1Y0VA 4Q4UA 3U33A 1QDBA 3D9DA 2LFWA 3HWCA 1IVHA 1UDYA 3II9A 2BU2A 2YYIA 3LG1A 4H81A 1RJ1A 3Q23A 1R2JA 5K3JA 4XVXA 4IRNA 2E0AA 2D29A 1BUCA 2AZEA 4H7QA 3D9FA 3PFDA 3GM6A 4L1FA 2R03A 2R05A 2C12A 4V25A 2F6LA 4HKRA 4AKGA 2EBHX 4P79A 2EC5A 3MMOA 2OEVA 3D2RA 2EBFX 2PG0A 1IS2A 3C3LA 2E81A 1Y8NA 2E80A 4G5EA 4JIOA 3TZ5A 2JBTA 4W9UA 1SC5A 4MP2A 2YYGA 4WJYA 2ZKJA 3VKGA 3MDDA 2ZDYA 3P4TA 5K3IA 1PK0A 2BU7A 3OWAA 4M9AA 2ZAFA 2IX6A 4KSFA 2YYKA 4Q5CA 4E00A 4OO2A 1K8TA 3D9EA 2AO2A 3BNHA 5B5VA 3BNFA 2JIFA 4FF4A 2OJQA 1EGEA 1SK6A 2BTZA 3VKHA 5M4NA 1GKXA 2JBRA 4KSAA 3Q24A 4X28C 2QR4A 4LQQB 2CJ8A 1XFVA 3EONA 3R7KA 3BNGA 3TTBA 1EGDA 3DJLA 1S26A 3OWMA 1T9GA 1OAHA 3EOMA 5M4KA 3OIBA 2IX5A 3CE2A 4KS9A 3TZ0A 3F29A 2GBBA 2ZDXA 1SIQA 3NF4A 1RP3A 3GQTA 1FS9A 1K90A 2FP1A 3RKHA 4ZXVA 3TORA 2HJNA 1R3BA 1RX0A 5J71A 2Q8IA 1Y8OA 3C46A 2A1TA 3Q22A 3MDEA 2XS1A 4P13A 4ZYJA 3BNJA 4MP7A 3SWOA 4U83A 1PI1A 1X8ZA 5BRKA 5J6AA 1LVCA 4FF1A 3UBRA 4KCFA 2XQRB 2BU8A 2CJ5A 2VF1A 4FZ4A 4JEKA 1XFUA
chains in the Genus database with same CATH topology
4Q17A 2DVLA 3B96A 1FS7A 5K3HA 3D9GA 1SIRA 2ZO5A 4L3YA 4Q1OA 2R0NA 2OR0A 4Q0TA 3L1TA 3D1IA 3SXQA 3SF6A 4RM7A 1JQIA 3M9VA 2J7AA 3UU9A 3MPIA 3MPJA 2UXWA 1WS9A 4X28A 4NXLA 2WBIA 4IV6A 2DDHA 1GU6A 2VR0A 1EGCA 2EBAA 3LGQA 1FS8A 4L3XA 2R0MA 2C0UA 1U8VA 2Z1QA 5K3GA 4O5MA 4KTOA 2YYLA 3MKHA 4L38A 2YYMA 3D6BA 3X0YA 2RDZA 2RF7A 4HR3A 2REHA 4L3ZA 3AFFA 2FONA 3SCEA 4Q5BA 3S7WA 3FO3A 1UKWA 2CX9A 2VIGA 1W07A 3AFEA 3FCJA 3X0XA 2YYJA 2OT4A 3MXLA 3GNCA 4N5FA 2JBSA 2RFQA 4DOYA 4Q4UA 1QDBA 3D9DA 3HWCA 1IVHA 1UDYA 3II9A 3LG1A 2YYIA 1R2JA 5K3JA 4XVXA 4IRNA 2D29A 1BUCA 3D9FA 3PFDA 3GM6A 4L1FA 2C12A 3MMOA 2PG0A 1IS2A 2E81A 2E80A 4G5EA 2JBTA 4W9UA 2YYGA 4WJYA 3MDDA 3P4TA 5K3IA 4Q5CA 3OWAA 4M9AA 2ZAFA 2IX6A 2YYKA 4OO2A 3BNHA 3D9EA 3BNFA 2JIFA 1EGEA 2JBRA 4X28C 3EONA 3R7KA 3BNGA 3TTBA 1EGDA 3OWMA 1T9GA 1OAHA 3EOMA 3OIBA 2IX5A 3F29A 1SIQA 3NF4A 3GQTA 1FS9A 3RKHA 4ZXVA 3TORA 1RX0A 2A1TA 3MDEA 3BNJA 4P13A 4ZYJA 3SWOA 4U83A 3UBRA 4KCFA 4JEKA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4Q17 A;  2DVL A;  3B96 A;  1FS7 A;  5K3H A;  3D9G A;  1SIR A;  2ZO5 A;  4L3Y A;  4Q1O A;  2R0N A;  2OR0 A;  4Q0T A;  3L1T A;  3D1I A;  3SXQ A;  3SF6 A;  4RM7 A;  1JQI A;  3M9V A;  2J7A A;  3UU9 A;  3MPI A;  3MPJ A;  2UXW A;  1WS9 A;  4X28 A;  4NXL A;  2WBI A;  4IV6 A;  2DDH A;  1GU6 A;  2VR0 A;  1EGC A;  2EBA A;  3LGQ A;  1FS8 A;  4L3X A;  2R0M A;  2C0U A;  1U8V A;  2Z1Q A;  5K3G A;  4O5M A;  4KTO A;  2YYL A;  3MKH A;  4L38 A;  2YYM A;  3D6B A;  3X0Y A;  2RDZ A;  2RF7 A;  4HR3 A;  2REH A;  4L3Z A;  3AFF A;  2FON A;  3SCE A;  4Q5B A;  3S7W A;  3FO3 A;  1UKW A;  2CX9 A;  2VIG A;  1W07 A;  3AFE A;  3FCJ A;  3X0X A;  2YYJ A;  2OT4 A;  3MXL A;  3GNC A;  4N5F A;  2JBS A;  2RFQ A;  4DOY A;  4Q4U A;  1QDB A;  3D9D A;  3HWC A;  1IVH A;  1UDY A;  3II9 A;  3LG1 A;  2YYI A;  1R2J A;  5K3J A;  4XVX A;  4IRN A;  2D29 A;  1BUC A;  3D9F A;  3PFD A;  3GM6 A;  4L1F A;  2C12 A;  3MMO A;  2PG0 A;  1IS2 A;  2E81 A;  2E80 A;  4G5E A;  2JBT A;  4W9U A;  2YYG A;  4WJY A;  3MDD A;  3P4T A;  5K3I A;  4Q5C A;  3OWA A;  4M9A A;  2ZAF A;  2IX6 A;  2YYK A;  4OO2 A;  3BNH A;  3D9E A;  3BNF A;  2JIF A;  1EGE A;  2JBR A;  4X28 C;  3EON A;  3R7K A;  3BNG A;  3TTB A;  1EGD A;  3OWM A;  1T9G A;  1OAH A;  3EOM A;  3OIB A;  2IX5 A;  3F29 A;  1SIQ A;  3NF4 A;  3GQT A;  1FS9 A;  3RKH A;  4ZXV A;  3TOR A;  1RX0 A;  2A1T A;  3MDE A;  3BNJ A;  4P13 A;  4ZYJ A;  3SWO A;  4U83 A;  3UBR A;  4KCF A;  4JEK A; 
#chains in the Genus database with same CATH topology
 3Q0A A;  4Q17 A;  4FF3 A;  4JIZ A;  2DVL A;  3B96 A;  1FS7 A;  3TZ2 A;  5K3H A;  3D9G A;  4F0X A;  1SIR A;  2ZO5 A;  4L3Y A;  4Q1O A;  4J1V A;  2R0N A;  2OR0 A;  4HKS A;  4Q0T A;  2Q8H A;  3C2P A;  2XS8 A;  3L1T A;  2PNR A;  3D1I A;  4LQS B;  3SXQ A;  3SF6 A;  2Q8G A;  4RM7 A;  1JQI A;  1JM6 A;  4AI6 A;  3M9V A;  4FF2 A;  2J7A A;  3UU9 A;  5M4M A;  1K93 A;  5M4P A;  3MPI A;  3MPJ A;  1RJ4 A;  2UXW A;  1WS9 A;  4X28 A;  1X91 A;  4NXL A;  4MPC A;  2CJ7 A;  4E02 A;  5BRM A;  2WBI A;  4IV6 A;  2DDH A;  1GU6 A;  1XFZ A;  1GKZ A;  2VR0 A;  5GJV E;  1EGC A;  2EBA A;  4MPE A;  5GJW E;  3LGQ A;  1FS8 A;  4QIC A;  4L3X A;  2YGW A;  2R0M A;  3CRK A;  2C0U A;  1U8V A;  2Z1Q A;  1XFX A;  5K3G A;  1X90 A;  4O5M A;  4AKI A;  4KTO A;  4AKH A;  2YYL A;  3MKH A;  1XG2 B;  2BU5 A;  2CJ6 A;  2YYM A;  3D6B A;  3X0Y A;  1GJV A;  2CJ4 A;  4H85 A;  4L38 A;  4V26 A;  2RDZ A;  2RF7 A;  2PO4 A;  4HR3 A;  2REH A;  4E01 A;  4L3Z A;  3AFF A;  2FON A;  2R02 A;  3SCE A;  4Q5B A;  3S7W A;  3FO3 A;  1UKW A;  2CX9 A;  3VAD A;  2VIG A;  3N0R A;  1W07 A;  3AFE A;  3FCJ A;  5B5W A;  3X0X A;  2FP2 A;  2OEX A;  5B6B A;  1Y8P A;  2YYJ A;  3TZ4 A;  5EZ3 A;  2Q8F A;  2BU6 A;  3KML A;  4MPN A;  2OT4 A;  4G97 A;  4DZY A;  3X29 A;  3MXL A;  3GNC A;  4N5F A;  1XFY A;  3CRL A;  2JBS A;  2RFQ A;  4DOY A;  1XFW A;  1Y0V A;  4Q4U A;  3U33 A;  1QDB A;  3D9D A;  2LFW A;  3HWC A;  1IVH A;  1UDY A;  3II9 A;  2BU2 A;  2YYI A;  3LG1 A;  4H81 A;  1RJ1 A;  3Q23 A;  1R2J A;  5K3J A;  4XVX A;  4IRN A;  2E0A A;  2D29 A;  1BUC A;  2AZE A;  4H7Q A;  3D9F A;  3PFD A;  3GM6 A;  4L1F A;  2R03 A;  2R05 A;  2C12 A;  4V25 A;  2F6L A;  4HKR A;  4AKG A;  2EBH X;  4P79 A;  2EC5 A;  3MMO A;  2OEV A;  3D2R A;  2EBF X;  2PG0 A;  1IS2 A;  3C3L A;  2E81 A;  1Y8N A;  2E80 A;  4G5E A;  4JIO A;  3TZ5 A;  2JBT A;  4W9U A;  1SC5 A;  4MP2 A;  2YYG A;  4WJY A;  2ZKJ A;  3VKG A;  3MDD A;  2ZDY A;  3P4T A;  5K3I A;  1PK0 A;  2BU7 A;  3OWA A;  4M9A A;  2ZAF A;  2IX6 A;  4KSF A;  2YYK A;  4Q5C A;  4E00 A;  4OO2 A;  1K8T A;  3D9E A;  2AO2 A;  3BNH A;  5B5V A;  3BNF A;  2JIF A;  4FF4 A;  2OJQ A;  1EGE A;  1SK6 A;  2BTZ A;  3VKH A;  5M4N A;  1GKX A;  2JBR A;  4KSA A;  3Q24 A;  4X28 C;  2QR4 A;  4LQQ B;  2CJ8 A;  1XFV A;  3EON A;  3R7K A;  3BNG A;  3TTB A;  1EGD A;  3DJL A;  1S26 A;  3OWM A;  1T9G A;  1OAH A;  3EOM A;  5M4K A;  3OIB A;  2IX5 A;  3CE2 A;  4KS9 A;  3TZ0 A;  3F29 A;  2GBB A;  2ZDX A;  1SIQ A;  3NF4 A;  1RP3 A;  3GQT A;  1FS9 A;  1K90 A;  2FP1 A;  3RKH A;  4ZXV A;  3TOR A;  2HJN A;  1R3B A;  1RX0 A;  5J71 A;  2Q8I A;  1Y8O A;  3C46 A;  2A1T A;  3Q22 A;  3MDE A;  2XS1 A;  4P13 A;  4ZYJ A;  3BNJ A;  4MP7 A;  3SWO A;  4U83 A;  1PI1 A;  1X8Z A;  5BRK A;  5J6A A;  1LVC A;  4FF1 A;  3UBR A;  4KCF A;  2XQR B;  2BU8 A;  2CJ5 A;  2VF1 A;  4FZ4 A;  4JEK A;  1XFU A; 
#chains in the Genus database with same CATH homology
 4Q17 A;  2DVL A;  3B96 A;  1FS7 A;  5K3H A;  3D9G A;  1SIR A;  2ZO5 A;  4L3Y A;  4Q1O A;  2R0N A;  2OR0 A;  4Q0T A;  3L1T A;  3D1I A;  3SXQ A;  3SF6 A;  4RM7 A;  1JQI A;  3M9V A;  2J7A A;  3UU9 A;  3MPI A;  3MPJ A;  2UXW A;  1WS9 A;  4X28 A;  4NXL A;  2WBI A;  4IV6 A;  2DDH A;  1GU6 A;  2VR0 A;  1EGC A;  2EBA A;  3LGQ A;  1FS8 A;  4L3X A;  2R0M A;  2C0U A;  1U8V A;  2Z1Q A;  5K3G A;  4O5M A;  4KTO A;  2YYL A;  3MKH A;  4L38 A;  2YYM A;  3D6B A;  3X0Y A;  2RDZ A;  2RF7 A;  4HR3 A;  2REH A;  4L3Z A;  3AFF A;  2FON A;  3SCE A;  4Q5B A;  3S7W A;  3FO3 A;  1UKW A;  2CX9 A;  2VIG A;  1W07 A;  3AFE A;  3FCJ A;  3X0X A;  2YYJ A;  2OT4 A;  3MXL A;  3GNC A;  4N5F A;  2JBS A;  2RFQ A;  4DOY A;  4Q4U A;  1QDB A;  3D9D A;  3HWC A;  1IVH A;  1UDY A;  3II9 A;  3LG1 A;  2YYI A;  1R2J A;  5K3J A;  4XVX A;  4IRN A;  2D29 A;  1BUC A;  3D9F A;  3PFD A;  3GM6 A;  4L1F A;  2C12 A;  3MMO A;  2PG0 A;  1IS2 A;  2E81 A;  2E80 A;  4G5E A;  2JBT A;  4W9U A;  2YYG A;  4WJY A;  3MDD A;  3P4T A;  5K3I A;  4Q5C A;  3OWA A;  4M9A A;  2ZAF A;  2IX6 A;  2YYK A;  4OO2 A;  3BNH A;  3D9E A;  3BNF A;  2JIF A;  1EGE A;  2JBR A;  4X28 C;  3EON A;  3R7K A;  3BNG A;  3TTB A;  1EGD A;  3OWM A;  1T9G A;  1OAH A;  3EOM A;  3OIB A;  2IX5 A;  3F29 A;  1SIQ A;  3NF4 A;  3GQT A;  1FS9 A;  3RKH A;  4ZXV A;  3TOR A;  1RX0 A;  2A1T A;  3MDE A;  3BNJ A;  4P13 A;  4ZYJ A;  3SWO A;  4U83 A;  3UBR A;  4KCF A;  4JEK A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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