2C0UA

Crystal structure of a covalent complex of nitroalkane oxidase trapped during substrate turnover
Total Genus 143
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
143
sequence length
430
structure length
430
Chain Sequence
VDFKLSPSQLEARRHAQAFANTVLTKASAEYSTQKDQLSRFQATRPFYREAVRHGLIKAQVPIPLGGTMESLVHESIILEELFAVEPATSITIVATALGLMPVILCDSPSLQEKFLKPFISGEGEPLASLMHSEPNGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNSGGWDYKGADLACVVCRVSDDPSKPQDPNVDPATQIAVLLVTRETIANNKKDAYQILGEPELAGHITTSGPHTRFTEFHVPHENLLCTPGLKAQGLVETAFAMSAALVGAMAIGTARAAFEEALVFAKSDTRGGSKHIIEHQSVADKLIDCKIRLETSRLLVWKAVTTLEDEALEWKVKLEMAMQTKIYTTDVAVECVIDAMKAVGMKSYAKDMSFPRLLNEVMCYPLFDGGNIGLRRRQMQRVMALEDYEPWAATYGS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords NITROALKANE OXIDASE
publication title Crystal Structures of Nitroalkane Oxidase: Insights Into the Reaction Mechanism from a Covalent Complex of the Flavoenzyme Trapped During Turnover.
pubmed doi rcsb
source organism Fusarium oxysporum
total genus 143
structure length 430
sequence length 430
chains with identical sequence B, C, D
ec nomenclature ec 1.7.3.1: Nitroalkane oxidase.
pdb deposition date 2005-09-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00441 Acyl-CoA_dh_1 Acyl-CoA dehydrogenase, C-terminal domain
A PF02771 Acyl-CoA_dh_N Acyl-CoA dehydrogenase, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.540.10 Mainly Alpha Orthogonal Bundle Butyryl-Coa Dehydrogenase, subunit A; domain 1 Acyl-CoA dehydrogenase/oxidase, N-terminal domain 2c0uA01
1.20.140.10 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A; domain 3 Butyryl-CoA Dehydrogenase, subunit A, domain 3 2c0uA03
2.40.110.10 Mainly Beta Beta Barrel Butyryl-CoA Dehydrogenase, subunit A; domain 2 Butyryl-CoA Dehydrogenase, subunit A, domain 2 2c0uA02
3BNGA 3L1TA 2PG0A 3TTBA 2IX5A 3P4TA 1QDBA 3AFEA 2RDZA 5K3HA 3SWOA 2D29A 4RM7A 2JIFA 3D1IA 1EGDA 3D9DA 1JQIA 3MPJA 1BUCA 4KCFA 4Q17A 2E81A 3S7WA 3MPIA 3D9FA 3MXLA 2YYMA 2CX9A 4L1FA 2ZAFA 4JEKA 2RFQA 4G5EA 4Q1OA 2YYKA 3RKHA 3MKHA 4L38A 3D9GA 4Q5CA 4XVXA 3SXQA 1SIQA 3SCEA 3LGQA 1UDYA 2YYJA 1OAHA 1FS7A 4NXLA 2YYGA 3LG1A 2YYIA 2OT4A 3UBRA 4U83A 3AFFA 2DDHA 2C0UA 3PFDA 3X0XA 4M9AA 4ZXVA 4O5MA 4P13A 4W9UA 3OIBA 4OO2A 3MDDA 3GM6A 3D9EA 1EGCA 2IX6A 4IRNA 5K3JA 4Q5BA 2R0NA 4WJYA 4Q4UA 1RX0A 2VR0A 2UXWA 3UU9A 4N5FA 1IVHA 3OWMA 4DOYA 3BNFA 3SF6A 4KTOA 3EONA 2J7AA 2Z1QA 3BNHA 3II9A 1SIRA 3MDEA 1UKWA 2FONA 2EBAA 1WS9A 3FCJA 3F29A 3FO3A 3MMOA 4L3YA 3GNCA 2VIGA 3TORA 2JBSA 1IS2A 2YYLA 1FS8A 4IV6A 3M9VA 4Q0TA 4L3XA 2OR0A 2JBTA 3D6BA 1EGEA 1T9GA 2DVLA 3X0YA 3B96A 4X28C 5K3IA 2E80A 2C12A 1W07A 3BNJA 3HWCA 1R2JA 2REHA 3OWAA 1GU6A 3EOMA 4L3ZA 3NF4A 2RF7A 3GQTA 4HR3A 3R7KA 2JBRA 2ZO5A 4ZYJA 5K3GA 1FS9A 4X28A 2R0MA 1U8VA 2A1TA 2WBIA
chains in the Genus database with same CATH superfamily
3BNGA 2YGWA 3VKGA 3L1TA 2PG0A 3TTBA 1XFVA 4E01A 1XFUA 2IX5A 2CJ5A 3TZ4A 3P4TA 1QDBA 3AFEA 2VF1A 5B5VA 3TZ5A 1PK0A 3C46A 2RDZA 3VADA 4E00A 5K3HA 1S26A 1Y8NA 1RJ1A 1Y8PA 3SWOA 1GJVA 2ZKJA 2D29A 4RM7A 2JIFA 3D1IA 1EGDA 3D9DA 1JQIA 3MPJA 1BUCA 3CRLA 5M4NA 4KCFA 4Q17A 2Q8IA 2E81A 3S7WA 3MPIA 2R03A 2BTZA 2Q8FA 3Q0AA 2Q8GA 3D9FA 3MXLA 2XS1A 2YYMA 1X8ZA 4FF2A 4AKIA 2CX9A 1X91A 4L1FA 2ZAFA 4F0XA 3C3LA 4MPNA 4JEKA 2RFQA 1GKZA 2LFWA 4G5EA 4Q1OA 2YYKA 3RKHA 4H81A 3MKHA 4L38A 2OEVA 3D9GA 4Q5CA 2BU8A 4XVXA 4P79A 3SXQA 4HKSA 1SIQA 2Q8HA 3SCEA 3LGQA 1X90A 1UDYA 2YYJA 2QR4A 1OAHA 1FS7A 4JIOA 4DZYA 2CJ7A 1Y8OA 4KSFA 3X29A 2BU6A 4KS9A 2E0AA 2GBBA 4NXLA 4G97A 2YYGA 3LG1A 2YYIA 4KSAA 1RJ4A 1Y0VA 2OT4A 3UBRA 4U83A 3AFFA 2DDHA 2BU7A 2BU2A 1PI1A 5M4KA 2AZEA 2C0UA 2AO2A 3DJLA 2CJ6A 5EZ3A 5BRKA 2OJQA 2XQRB 5M4PA 1XFXA 3PFDA 4FF4A 3X0XA 4M9AA 4ZXVA 4O5MA 4P13A 4W9UA 3OIBA 4OO2A 3MDDA 4HKRA 3GM6A 4J1VA 3D9EA 1EGCA 2IX6A 3TZ0A 2CJ4A 4AI6A 4IRNA 5K3JA 4Q5BA 5GJWE 2EC5A 2R0NA 4WJYA 1XFZA 1JM6A 4Q4UA 1RX0A 3Q23A 4FZ4A 2VR0A 3U33A 2UXWA 4AKHA 3UU9A 4N5FA 1IVHA 3OWMA 5M4MA 5J6AA 4DOYA 2F6LA 1LVCA 3BNFA 3SF6A 4KTOA 3Q22A 3EONA 2J7AA 4MPCA 3D2RA 2Z1QA 3BNHA 2XS8A 4FF1A 1SC5A 4FF3A 3II9A 4AKGA 3VKHA 1SIRA 2ZDYA 3MDEA 1UKWA 2FONA 1XG2B 2EBAA 5GJVE 1WS9A 3FCJA 3F29A 4MP7A 3FO3A 2ZDXA 5BRMA 3MMOA 4L3YA 4MP2A 3GNCA 2VIGA 3TORA 2JBSA 1R3BA 1IS2A 2BU5A 2YYLA 4JIZA 2EBHX 1FS8A 5B5WA 4IV6A 3M9VA 3C2PA 4Q0TA 1RP3A 4V26A 1K93A 2R05A 4QICA 4H85A 4L3XA 2PNRA 1K90A 3N0RA 2OR0A 2JBTA 4V25A 3D6BA 1EGEA 1GKXA 3CE2A 4H7QA 2R02A 1T9GA 1SK6A 2DVLA 1K8TA 2PO4A 3X0YA 5J71A 3B96A 4X28C 5K3IA 2E80A 2C12A 1XFWA 1W07A 2EBFX 2FP2A 3BNJA 3HWCA 1R2JA 3TZ2A 2REHA 3OWAA 1GU6A 2FP1A 4LQQB 4E02A 1XFYA 3CRKA 3EOMA 4L3ZA 4LQSB 2OEXA 2CJ8A 3KMLA 3NF4A 5B6BA 2RF7A 3GQTA 4HR3A 3R7KA 2JBRA 2ZO5A 3Q24A 4ZYJA 5K3GA 4MPEA 1FS9A 4X28A 2HJNA 2R0MA 1U8VA 2A1TA 2WBIA
chains in the Genus database with same CATH topology
3BNGA 3L1TA 2PG0A 3TTBA 2IX5A 3P4TA 1QDBA 3AFEA 2RDZA 5K3HA 3SWOA 2D29A 4RM7A 2JIFA 3D1IA 1EGDA 3D9DA 1JQIA 3MPJA 1BUCA 4KCFA 4Q17A 2E81A 3S7WA 3MPIA 3D9FA 3MXLA 2YYMA 2CX9A 4L1FA 2ZAFA 4JEKA 2RFQA 4G5EA 4Q1OA 2YYKA 3RKHA 3MKHA 4L38A 3D9GA 4Q5CA 4XVXA 3SXQA 1SIQA 3SCEA 3LGQA 1UDYA 2YYJA 1OAHA 1FS7A 4NXLA 2YYGA 3LG1A 2YYIA 2OT4A 3UBRA 4U83A 3AFFA 2DDHA 2C0UA 3PFDA 3X0XA 4M9AA 4ZXVA 4O5MA 4P13A 4W9UA 3OIBA 4OO2A 3MDDA 3GM6A 3D9EA 1EGCA 2IX6A 4IRNA 5K3JA 4Q5BA 2R0NA 4WJYA 4Q4UA 1RX0A 2VR0A 2UXWA 3UU9A 4N5FA 1IVHA 3OWMA 4DOYA 3BNFA 3SF6A 4KTOA 3EONA 2J7AA 2Z1QA 3BNHA 3II9A 1SIRA 3MDEA 1UKWA 2FONA 2EBAA 1WS9A 3FCJA 3F29A 3FO3A 3MMOA 4L3YA 3GNCA 2VIGA 3TORA 2JBSA 1IS2A 2YYLA 1FS8A 4IV6A 3M9VA 4Q0TA 4L3XA 2OR0A 2JBTA 3D6BA 1EGEA 1T9GA 2DVLA 3X0YA 3B96A 4X28C 5K3IA 2E80A 2C12A 1W07A 3BNJA 3HWCA 1R2JA 2REHA 3OWAA 1GU6A 3EOMA 4L3ZA 3NF4A 2RF7A 3GQTA 4HR3A 3R7KA 2JBRA 2ZO5A 4ZYJA 5K3GA 1FS9A 4X28A 2R0MA 1U8VA 2A1TA 2WBIA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3BNG A;  3L1T A;  2PG0 A;  3TTB A;  2IX5 A;  3P4T A;  1QDB A;  3AFE A;  2RDZ A;  5K3H A;  3SWO A;  2D29 A;  4RM7 A;  2JIF A;  3D1I A;  1EGD A;  3D9D A;  1JQI A;  3MPJ A;  1BUC A;  4KCF A;  4Q17 A;  2E81 A;  3S7W A;  3MPI A;  3D9F A;  3MXL A;  2YYM A;  2CX9 A;  4L1F A;  2ZAF A;  4JEK A;  2RFQ A;  4G5E A;  4Q1O A;  2YYK A;  3RKH A;  3MKH A;  4L38 A;  3D9G A;  4Q5C A;  4XVX A;  3SXQ A;  1SIQ A;  3SCE A;  3LGQ A;  1UDY A;  2YYJ A;  1OAH A;  1FS7 A;  4NXL A;  2YYG A;  3LG1 A;  2YYI A;  2OT4 A;  3UBR A;  4U83 A;  3AFF A;  2DDH A;  2C0U A;  3PFD A;  3X0X A;  4M9A A;  4ZXV A;  4O5M A;  4P13 A;  4W9U A;  3OIB A;  4OO2 A;  3MDD A;  3GM6 A;  3D9E A;  1EGC A;  2IX6 A;  4IRN A;  5K3J A;  4Q5B A;  2R0N A;  4WJY A;  4Q4U A;  1RX0 A;  2VR0 A;  2UXW A;  3UU9 A;  4N5F A;  1IVH A;  3OWM A;  4DOY A;  3BNF A;  3SF6 A;  4KTO A;  3EON A;  2J7A A;  2Z1Q A;  3BNH A;  3II9 A;  1SIR A;  3MDE A;  1UKW A;  2FON A;  2EBA A;  1WS9 A;  3FCJ A;  3F29 A;  3FO3 A;  3MMO A;  4L3Y A;  3GNC A;  2VIG A;  3TOR A;  2JBS A;  1IS2 A;  2YYL A;  1FS8 A;  4IV6 A;  3M9V A;  4Q0T A;  4L3X A;  2OR0 A;  2JBT A;  3D6B A;  1EGE A;  1T9G A;  2DVL A;  3X0Y A;  3B96 A;  4X28 C;  5K3I A;  2E80 A;  2C12 A;  1W07 A;  3BNJ A;  3HWC A;  1R2J A;  2REH A;  3OWA A;  1GU6 A;  3EOM A;  4L3Z A;  3NF4 A;  2RF7 A;  3GQT A;  4HR3 A;  3R7K A;  2JBR A;  2ZO5 A;  4ZYJ A;  5K3G A;  1FS9 A;  4X28 A;  2R0M A;  1U8V A;  2A1T A;  2WBI A; 
#chains in the Genus database with same CATH topology
 3BNG A;  2YGW A;  3VKG A;  3L1T A;  2PG0 A;  3TTB A;  1XFV A;  4E01 A;  1XFU A;  2IX5 A;  2CJ5 A;  3TZ4 A;  3P4T A;  1QDB A;  3AFE A;  2VF1 A;  5B5V A;  3TZ5 A;  1PK0 A;  3C46 A;  2RDZ A;  3VAD A;  4E00 A;  5K3H A;  1S26 A;  1Y8N A;  1RJ1 A;  1Y8P A;  3SWO A;  1GJV A;  2ZKJ A;  2D29 A;  4RM7 A;  2JIF A;  3D1I A;  1EGD A;  3D9D A;  1JQI A;  3MPJ A;  1BUC A;  3CRL A;  5M4N A;  4KCF A;  4Q17 A;  2Q8I A;  2E81 A;  3S7W A;  3MPI A;  2R03 A;  2BTZ A;  2Q8F A;  3Q0A A;  2Q8G A;  3D9F A;  3MXL A;  2XS1 A;  2YYM A;  1X8Z A;  4FF2 A;  4AKI A;  2CX9 A;  1X91 A;  4L1F A;  2ZAF A;  4F0X A;  3C3L A;  4MPN A;  4JEK A;  2RFQ A;  1GKZ A;  2LFW A;  4G5E A;  4Q1O A;  2YYK A;  3RKH A;  4H81 A;  3MKH A;  4L38 A;  2OEV A;  3D9G A;  4Q5C A;  2BU8 A;  4XVX A;  4P79 A;  3SXQ A;  4HKS A;  1SIQ A;  2Q8H A;  3SCE A;  3LGQ A;  1X90 A;  1UDY A;  2YYJ A;  2QR4 A;  1OAH A;  1FS7 A;  4JIO A;  4DZY A;  2CJ7 A;  1Y8O A;  4KSF A;  3X29 A;  2BU6 A;  4KS9 A;  2E0A A;  2GBB A;  4NXL A;  4G97 A;  2YYG A;  3LG1 A;  2YYI A;  4KSA A;  1RJ4 A;  1Y0V A;  2OT4 A;  3UBR A;  4U83 A;  3AFF A;  2DDH A;  2BU7 A;  2BU2 A;  1PI1 A;  5M4K A;  2AZE A;  2C0U A;  2AO2 A;  3DJL A;  2CJ6 A;  5EZ3 A;  5BRK A;  2OJQ A;  2XQR B;  5M4P A;  1XFX A;  3PFD A;  4FF4 A;  3X0X A;  4M9A A;  4ZXV A;  4O5M A;  4P13 A;  4W9U A;  3OIB A;  4OO2 A;  3MDD A;  4HKR A;  3GM6 A;  4J1V A;  3D9E A;  1EGC A;  2IX6 A;  3TZ0 A;  2CJ4 A;  4AI6 A;  4IRN A;  5K3J A;  4Q5B A;  5GJW E;  2EC5 A;  2R0N A;  4WJY A;  1XFZ A;  1JM6 A;  4Q4U A;  1RX0 A;  3Q23 A;  4FZ4 A;  2VR0 A;  3U33 A;  2UXW A;  4AKH A;  3UU9 A;  4N5F A;  1IVH A;  3OWM A;  5M4M A;  5J6A A;  4DOY A;  2F6L A;  1LVC A;  3BNF A;  3SF6 A;  4KTO A;  3Q22 A;  3EON A;  2J7A A;  4MPC A;  3D2R A;  2Z1Q A;  3BNH A;  2XS8 A;  4FF1 A;  1SC5 A;  4FF3 A;  3II9 A;  4AKG A;  3VKH A;  1SIR A;  2ZDY A;  3MDE A;  1UKW A;  2FON A;  1XG2 B;  2EBA A;  5GJV E;  1WS9 A;  3FCJ A;  3F29 A;  4MP7 A;  3FO3 A;  2ZDX A;  5BRM A;  3MMO A;  4L3Y A;  4MP2 A;  3GNC A;  2VIG A;  3TOR A;  2JBS A;  1R3B A;  1IS2 A;  2BU5 A;  2YYL A;  4JIZ A;  2EBH X;  1FS8 A;  5B5W A;  4IV6 A;  3M9V A;  3C2P A;  4Q0T A;  1RP3 A;  4V26 A;  1K93 A;  2R05 A;  4QIC A;  4H85 A;  4L3X A;  2PNR A;  1K90 A;  3N0R A;  2OR0 A;  2JBT A;  4V25 A;  3D6B A;  1EGE A;  1GKX A;  3CE2 A;  4H7Q A;  2R02 A;  1T9G A;  1SK6 A;  2DVL A;  1K8T A;  2PO4 A;  3X0Y A;  5J71 A;  3B96 A;  4X28 C;  5K3I A;  2E80 A;  2C12 A;  1XFW A;  1W07 A;  2EBF X;  2FP2 A;  3BNJ A;  3HWC A;  1R2J A;  3TZ2 A;  2REH A;  3OWA A;  1GU6 A;  2FP1 A;  4LQQ B;  4E02 A;  1XFY A;  3CRK A;  3EOM A;  4L3Z A;  4LQS B;  2OEX A;  2CJ8 A;  3KML A;  3NF4 A;  5B6B A;  2RF7 A;  3GQT A;  4HR3 A;  3R7K A;  2JBR A;  2ZO5 A;  3Q24 A;  4ZYJ A;  5K3G A;  4MPE A;  1FS9 A;  4X28 A;  2HJN A;  2R0M A;  1U8V A;  2A1T A;  2WBI A; 
#chains in the Genus database with same CATH homology
 3BNG A;  3L1T A;  2PG0 A;  3TTB A;  2IX5 A;  3P4T A;  1QDB A;  3AFE A;  2RDZ A;  5K3H A;  3SWO A;  2D29 A;  4RM7 A;  2JIF A;  3D1I A;  1EGD A;  3D9D A;  1JQI A;  3MPJ A;  1BUC A;  4KCF A;  4Q17 A;  2E81 A;  3S7W A;  3MPI A;  3D9F A;  3MXL A;  2YYM A;  2CX9 A;  4L1F A;  2ZAF A;  4JEK A;  2RFQ A;  4G5E A;  4Q1O A;  2YYK A;  3RKH A;  3MKH A;  4L38 A;  3D9G A;  4Q5C A;  4XVX A;  3SXQ A;  1SIQ A;  3SCE A;  3LGQ A;  1UDY A;  2YYJ A;  1OAH A;  1FS7 A;  4NXL A;  2YYG A;  3LG1 A;  2YYI A;  2OT4 A;  3UBR A;  4U83 A;  3AFF A;  2DDH A;  2C0U A;  3PFD A;  3X0X A;  4M9A A;  4ZXV A;  4O5M A;  4P13 A;  4W9U A;  3OIB A;  4OO2 A;  3MDD A;  3GM6 A;  3D9E A;  1EGC A;  2IX6 A;  4IRN A;  5K3J A;  4Q5B A;  2R0N A;  4WJY A;  4Q4U A;  1RX0 A;  2VR0 A;  2UXW A;  3UU9 A;  4N5F A;  1IVH A;  3OWM A;  4DOY A;  3BNF A;  3SF6 A;  4KTO A;  3EON A;  2J7A A;  2Z1Q A;  3BNH A;  3II9 A;  1SIR A;  3MDE A;  1UKW A;  2FON A;  2EBA A;  1WS9 A;  3FCJ A;  3F29 A;  3FO3 A;  3MMO A;  4L3Y A;  3GNC A;  2VIG A;  3TOR A;  2JBS A;  1IS2 A;  2YYL A;  1FS8 A;  4IV6 A;  3M9V A;  4Q0T A;  4L3X A;  2OR0 A;  2JBT A;  3D6B A;  1EGE A;  1T9G A;  2DVL A;  3X0Y A;  3B96 A;  4X28 C;  5K3I A;  2E80 A;  2C12 A;  1W07 A;  3BNJ A;  3HWC A;  1R2J A;  2REH A;  3OWA A;  1GU6 A;  3EOM A;  4L3Z A;  3NF4 A;  2RF7 A;  3GQT A;  4HR3 A;  3R7K A;  2JBR A;  2ZO5 A;  4ZYJ A;  5K3G A;  1FS9 A;  4X28 A;  2R0M A;  1U8V A;  2A1T A;  2WBI A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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