5K3IA

Crystal structure of acyl-coa oxidase-1 in caenorhabditis elegans complexed with fad and atp
Total Genus 271
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
271
sequence length
668
structure length
661
Chain Sequence
VHLNKTIQEGDNPDLTAERLTATFDTHAMAAQIYGGEMRARRRREITAKLAEIPELHDSMPLPYMTREEKIMESARKLTVLTQRMSEIIDPTDAGELYHLNNEVLGIEGNPMALHGVMFIPALNAQASDEQQAKWLIRALRREIIGTYAQTEMGHGTNLQNLETTATYDIGTQEFVLHTPKITALKWWPGNLGKSSNYAVVVAHMYIKGKNFGPHTFMVPLRDEKTHKPLPGITIGDIGPKMAYNIVDNGFLGFNNYRIPRTNLLMRHTKVEADGTYIKPPAMVHVRSYMLTGQAIMLSYALNIATRYSAVRRQGQIDKNEPEVKVLEYQTQQHRLFPFIARAYAFQFAGAETVKLYERVLKEMKSGNVSLMADLHALTSGLKSVVTHQTGEGIEQARMACGGHGYSMASYISEIYGVAIGGCTYAGENMVMLLQLARYLVKSAALVKSGKASQLGPLVAYLGARSEPTSLIDRVPNGGITEYIKTFQHIAKRQTLKAANKFFGLMENGEKREIAWNKSSVELNRASRLHTRLFIVEAFARRVNEIGDITIKEALSDLLHLHVNYELLDVATYALEDGFMSSTQLDYVRDQLYFYLQKIRPNAVSLLDSWEFSDRELRSVLGRRDGHVYENLFKWAKESPLNKTDVLPSVDTYLKPMMEKA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Structural characterization of acyl-CoA oxidases reveals a direct link between pheromone biosynthesis and metabolic state in Caenorhabditis elegans.
pubmed doi rcsb
molecule tags Oxidoreductase
source organism Caenorhabditis elegans
molecule keywords Acyl-coenzyme A oxidase
total genus 271
structure length 661
sequence length 668
chains with identical sequence B, C, D, E, F, G, H
ec nomenclature
pdb deposition date 2016-05-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01756 ACOX Acyl-CoA oxidase
A PF02770 Acyl-CoA_dh_M Acyl-CoA dehydrogenase, middle domain
A PF14749 Acyl-CoA_ox_N Acyl-coenzyme A oxidase N-terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.540.10 Mainly Alpha Orthogonal Bundle Butyryl-Coa Dehydrogenase, subunit A; domain 1 Acyl-CoA dehydrogenase/oxidase, N-terminal domain 5k3iA01
1.20.140.10 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A; domain 3 Butyryl-CoA Dehydrogenase, subunit A, domain 3 5k3iA03
1.20.140.10 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A; domain 3 Butyryl-CoA Dehydrogenase, subunit A, domain 3 5k3iA04
2.40.110.10 Mainly Beta Beta Barrel Butyryl-CoA Dehydrogenase, subunit A; domain 2 Butyryl-CoA Dehydrogenase, subunit A, domain 2 5k3iA02
2VIGA 2E81A 4Q17A 4IV6A 1GU6A 3D1IA 2JIFA 3M9VA 2YYGA 3FCJA 3MPIA 2YYMA 2A1TA 2C12A 4Q1OA 5K3IA 1R2JA 4U83A 4P13A 2WBIA 1OAHA 3MDDA 4O5MA 3FO3A 4XVXA 1QDBA 3P4TA 3NF4A 3AFFA 2JBTA 3LG1A 2OT4A 3D9EA 3OWMA 4NXLA 3D6BA 2DDHA 3EOMA 4OO2A 1EGDA 3SCEA 1FS8A 2JBRA 4L3ZA 2R0MA 3GQTA 3BNFA 1W07A 4ZXVA 1EGEA 3MMOA 4WJYA 4KCFA 2Z1QA 3B96A 2DVLA 2YYIA 2VR0A 1EGCA 3BNHA 3MPJA 2RDZA 2UXWA 3R7KA 3SF6A 2OR0A 4RM7A 4Q5CA 1UKWA 2ZAFA 2REHA 3L1TA 1SIQA 4Q4UA 5K3JA 2ZO5A 4X28C 3D9GA 4L38A 3OWAA 4HR3A 1RX0A 1UDYA 3X0YA 3MDEA 3D9DA 1FS7A 4KTOA 2FONA 3S7WA 3X0XA 1T9GA 1WS9A 4ZYJA 3HWCA 2RF7A 4Q0TA 2D29A 4L1FA 2PG0A 2C0UA 2YYJA 1JQIA 3UBRA 3SXQA 3MKHA 2YYKA 3LGQA 3TTBA 4L3XA 1U8VA 5K3HA 3GNCA 3AFEA 4W9UA 3BNJA 2RFQA 1SIRA 4N5FA 4M9AA 3TORA 3SWOA 3F29A 2JBSA 1IVHA 3D9FA 3OIBA 1IS2A 4X28A 4Q5BA 2IX6A 3EONA 5K3GA 3GM6A 3II9A 4DOYA 3MXLA 4JEKA 3RKHA 4L3YA 3UU9A 4IRNA 1FS9A 2YYLA 1BUCA 3PFDA 2R0NA 3BNGA 2CX9A 2E80A 2IX5A 4G5EA 2EBAA 2J7AA
chains in the Genus database with same CATH superfamily
1S26A 2VIGA 2E81A 2XS1A 3Q23A 4Q17A 4IV6A 1GU6A 1Y8NA 3TZ5A 3D1IA 2JIFA 4AKGA 3M9VA 2F6LA 2YYGA 3FCJA 2PO4A 3MPIA 2AO2A 2YYMA 2A1TA 2C12A 4Q1OA 5K3IA 1K93A 1R2JA 4U83A 3C2PA 1SK6A 4P13A 4HKRA 2WBIA 1OAHA 4AI6A 3MDDA 2BU5A 4KSAA 4O5MA 3FO3A 1K90A 4XVXA 1QDBA 3P4TA 3NF4A 4MPCA 4DZYA 4AKIA 2AZEA 3AFFA 2JBTA 3LG1A 4G97A 5GJWE 2OT4A 2GBBA 3D9EA 2BU2A 3D2RA 3OWMA 4NXLA 3D6BA 4L38A 4H85A 2DDHA 3EOMA 2FP2A 4H81A 4OO2A 1XFXA 1EGDA 3SCEA 1FS8A 2CJ6A 2JBRA 1X8ZA 4L3ZA 4KSFA 1PI1A 2R0MA 3GQTA 3BNFA 2E0AA 1XFYA 1W07A 4F0XA 4ZXVA 4LQQB 1EGEA 3DJLA 1XFZA 4E01A 1PK0A 3MMOA 1X91A 4WJYA 4KCFA 1Y8PA 4JIZA 2Q8IA 2Z1QA 3B96A 4QICA 3TZ0A 3C46A 2DVLA 2R03A 4E00A 2YYIA 3CRLA 2VR0A 1EGCA 3BNHA 3MPJA 2RDZA 4LQSB 5B5VA 2UXWA 3R7KA 2FP1A 3SF6A 2OR0A 4RM7A 5BRKA 4Q5CA 2EBFX 4AKHA 1UKWA 2ZAFA 2EC5A 2BTZA 2REHA 1LVCA 3L1TA 1SIQA 4Q4UA 5K3JA 2ZO5A 3N0RA 2R02A 4X28C 3D9GA 4H7QA 4JIOA 3OWAA 4HR3A 1GKZA 1X90A 1RX0A 1UDYA 2CJ7A 2LFWA 2VF1A 5GJVE 3X0YA 5M4PA 3MDEA 3D9DA 1FS7A 4KTOA 2FONA 2CJ4A 4FZ4A 4MPNA 3S7WA 3Q0AA 1RJ4A 3X0XA 1T9GA 2Q8FA 3VADA 5J71A 4E02A 5M4MA 4FF2A 1WS9A 2Q8GA 4V25A 3X29A 3CE2A 4ZYJA 3HWCA 5B6BA 2QR4A 3Q22A 2RF7A 1XFWA 2HJNA 4Q0TA 1XFVA 1R3BA 2D29A 4L1FA 2PG0A 1K8TA 2BU7A 2BU8A 2OEVA 5M4KA 2C0UA 2YYJA 5J6AA 1JQIA 3UBRA 1GJVA 2YGWA 2EBHX 3KMLA 3SXQA 3MKHA 1GKXA 2YYKA 5M4NA 4FF4A 3LGQA 3TTBA 4P79A 2R05A 1U8VA 5K3HA 4L3XA 3GNCA 3AFEA 4W9UA 3BNJA 1Y8OA 2RFQA 4MPEA 3TZ2A 1SIRA 4MP7A 3TZ4A 2PNRA 4N5FA 4M9AA 3TORA 3SWOA 3F29A 4J1VA 2JBSA 2ZDYA 1IVHA 3D9FA 3OIBA 3VKGA 1IS2A 4X28A 4Q5BA 1RP3A 2CJ5A 2IX6A 4KS9A 3EONA 5K3GA 3GM6A 4FF3A 2XQRB 3Q24A 1Y0VA 3II9A 3C3LA 4DOYA 3VKHA 2OJQA 3MXLA 2BU6A 2Q8HA 4JEKA 3RKHA 4FF1A 4L3YA 1SC5A 3UU9A 4IRNA 4MP2A 1FS9A 1XFUA 2YYLA 1BUCA 3PFDA 2XS8A 3U33A 1JM6A 1XG2B 2OEXA 2ZDXA 1RJ1A 2ZKJA 5BRMA 2R0NA 5B5WA 3BNGA 2CX9A 5EZ3A 4V26A 2E80A 4HKSA 2IX5A 2CJ8A 3CRKA 4G5EA 2EBAA 2J7AA
chains in the Genus database with same CATH topology
2VIGA 2E81A 4Q17A 4IV6A 1GU6A 3D1IA 2JIFA 3M9VA 2YYGA 3FCJA 3MPIA 2YYMA 2A1TA 2C12A 4Q1OA 5K3IA 1R2JA 4U83A 4P13A 2WBIA 1OAHA 3MDDA 4O5MA 3FO3A 4XVXA 1QDBA 3P4TA 3NF4A 3AFFA 2JBTA 3LG1A 2OT4A 3D9EA 3OWMA 4NXLA 3D6BA 2DDHA 3EOMA 4OO2A 1EGDA 3SCEA 1FS8A 2JBRA 4L3ZA 2R0MA 3GQTA 3BNFA 1W07A 4ZXVA 1EGEA 3MMOA 4WJYA 4KCFA 2Z1QA 3B96A 2DVLA 2YYIA 2VR0A 1EGCA 3BNHA 3MPJA 2RDZA 2UXWA 3R7KA 3SF6A 2OR0A 4RM7A 4Q5CA 1UKWA 2ZAFA 2REHA 3L1TA 1SIQA 4Q4UA 5K3JA 2ZO5A 4X28C 3D9GA 4L38A 3OWAA 4HR3A 1RX0A 1UDYA 3X0YA 3MDEA 3D9DA 1FS7A 4KTOA 2FONA 3S7WA 3X0XA 1T9GA 1WS9A 4ZYJA 3HWCA 2RF7A 4Q0TA 2D29A 4L1FA 2PG0A 2C0UA 2YYJA 1JQIA 3UBRA 3SXQA 3MKHA 2YYKA 3LGQA 3TTBA 4L3XA 1U8VA 5K3HA 3GNCA 3AFEA 4W9UA 3BNJA 2RFQA 1SIRA 4N5FA 4M9AA 3TORA 3SWOA 3F29A 2JBSA 1IVHA 3D9FA 3OIBA 1IS2A 4X28A 4Q5BA 2IX6A 3EONA 5K3GA 3GM6A 3II9A 4DOYA 3MXLA 4JEKA 3RKHA 4L3YA 3UU9A 4IRNA 1FS9A 2YYLA 1BUCA 3PFDA 2R0NA 3BNGA 2CX9A 2E80A 2IX5A 4G5EA 2EBAA 2J7AA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2VIG A;  2E81 A;  4Q17 A;  4IV6 A;  1GU6 A;  3D1I A;  2JIF A;  3M9V A;  2YYG A;  3FCJ A;  3MPI A;  2YYM A;  2A1T A;  2C12 A;  4Q1O A;  5K3I A;  1R2J A;  4U83 A;  4P13 A;  2WBI A;  1OAH A;  3MDD A;  4O5M A;  3FO3 A;  4XVX A;  1QDB A;  3P4T A;  3NF4 A;  3AFF A;  2JBT A;  3LG1 A;  2OT4 A;  3D9E A;  3OWM A;  4NXL A;  3D6B A;  2DDH A;  3EOM A;  4OO2 A;  1EGD A;  3SCE A;  1FS8 A;  2JBR A;  4L3Z A;  2R0M A;  3GQT A;  3BNF A;  1W07 A;  4ZXV A;  1EGE A;  3MMO A;  4WJY A;  4KCF A;  2Z1Q A;  3B96 A;  2DVL A;  2YYI A;  2VR0 A;  1EGC A;  3BNH A;  3MPJ A;  2RDZ A;  2UXW A;  3R7K A;  3SF6 A;  2OR0 A;  4RM7 A;  4Q5C A;  1UKW A;  2ZAF A;  2REH A;  3L1T A;  1SIQ A;  4Q4U A;  5K3J A;  2ZO5 A;  4X28 C;  3D9G A;  4L38 A;  3OWA A;  4HR3 A;  1RX0 A;  1UDY A;  3X0Y A;  3MDE A;  3D9D A;  1FS7 A;  4KTO A;  2FON A;  3S7W A;  3X0X A;  1T9G A;  1WS9 A;  4ZYJ A;  3HWC A;  2RF7 A;  4Q0T A;  2D29 A;  4L1F A;  2PG0 A;  2C0U A;  2YYJ A;  1JQI A;  3UBR A;  3SXQ A;  3MKH A;  2YYK A;  3LGQ A;  3TTB A;  4L3X A;  1U8V A;  5K3H A;  3GNC A;  3AFE A;  4W9U A;  3BNJ A;  2RFQ A;  1SIR A;  4N5F A;  4M9A A;  3TOR A;  3SWO A;  3F29 A;  2JBS A;  1IVH A;  3D9F A;  3OIB A;  1IS2 A;  4X28 A;  4Q5B A;  2IX6 A;  3EON A;  5K3G A;  3GM6 A;  3II9 A;  4DOY A;  3MXL A;  4JEK A;  3RKH A;  4L3Y A;  3UU9 A;  4IRN A;  1FS9 A;  2YYL A;  1BUC A;  3PFD A;  2R0N A;  3BNG A;  2CX9 A;  2E80 A;  2IX5 A;  4G5E A;  2EBA A;  2J7A A; 
#chains in the Genus database with same CATH topology
 1S26 A;  2VIG A;  2E81 A;  2XS1 A;  3Q23 A;  4Q17 A;  4IV6 A;  1GU6 A;  1Y8N A;  3TZ5 A;  3D1I A;  2JIF A;  4AKG A;  3M9V A;  2F6L A;  2YYG A;  3FCJ A;  2PO4 A;  3MPI A;  2AO2 A;  2YYM A;  2A1T A;  2C12 A;  4Q1O A;  5K3I A;  1K93 A;  1R2J A;  4U83 A;  3C2P A;  1SK6 A;  4P13 A;  4HKR A;  2WBI A;  1OAH A;  4AI6 A;  3MDD A;  2BU5 A;  4KSA A;  4O5M A;  3FO3 A;  1K90 A;  4XVX A;  1QDB A;  3P4T A;  3NF4 A;  4MPC A;  4DZY A;  4AKI A;  2AZE A;  3AFF A;  2JBT A;  3LG1 A;  4G97 A;  5GJW E;  2OT4 A;  2GBB A;  3D9E A;  2BU2 A;  3D2R A;  3OWM A;  4NXL A;  3D6B A;  4L38 A;  4H85 A;  2DDH A;  3EOM A;  2FP2 A;  4H81 A;  4OO2 A;  1XFX A;  1EGD A;  3SCE A;  1FS8 A;  2CJ6 A;  2JBR A;  1X8Z A;  4L3Z A;  4KSF A;  1PI1 A;  2R0M A;  3GQT A;  3BNF A;  2E0A A;  1XFY A;  1W07 A;  4F0X A;  4ZXV A;  4LQQ B;  1EGE A;  3DJL A;  1XFZ A;  4E01 A;  1PK0 A;  3MMO A;  1X91 A;  4WJY A;  4KCF A;  1Y8P A;  4JIZ A;  2Q8I A;  2Z1Q A;  3B96 A;  4QIC A;  3TZ0 A;  3C46 A;  2DVL A;  2R03 A;  4E00 A;  2YYI A;  3CRL A;  2VR0 A;  1EGC A;  3BNH A;  3MPJ A;  2RDZ A;  4LQS B;  5B5V A;  2UXW A;  3R7K A;  2FP1 A;  3SF6 A;  2OR0 A;  4RM7 A;  5BRK A;  4Q5C A;  2EBF X;  4AKH A;  1UKW A;  2ZAF A;  2EC5 A;  2BTZ A;  2REH A;  1LVC A;  3L1T A;  1SIQ A;  4Q4U A;  5K3J A;  2ZO5 A;  3N0R A;  2R02 A;  4X28 C;  3D9G A;  4H7Q A;  4JIO A;  3OWA A;  4HR3 A;  1GKZ A;  1X90 A;  1RX0 A;  1UDY A;  2CJ7 A;  2LFW A;  2VF1 A;  5GJV E;  3X0Y A;  5M4P A;  3MDE A;  3D9D A;  1FS7 A;  4KTO A;  2FON A;  2CJ4 A;  4FZ4 A;  4MPN A;  3S7W A;  3Q0A A;  1RJ4 A;  3X0X A;  1T9G A;  2Q8F A;  3VAD A;  5J71 A;  4E02 A;  5M4M A;  4FF2 A;  1WS9 A;  2Q8G A;  4V25 A;  3X29 A;  3CE2 A;  4ZYJ A;  3HWC A;  5B6B A;  2QR4 A;  3Q22 A;  2RF7 A;  1XFW A;  2HJN A;  4Q0T A;  1XFV A;  1R3B A;  2D29 A;  4L1F A;  2PG0 A;  1K8T A;  2BU7 A;  2BU8 A;  2OEV A;  5M4K A;  2C0U A;  2YYJ A;  5J6A A;  1JQI A;  3UBR A;  1GJV A;  2YGW A;  2EBH X;  3KML A;  3SXQ A;  3MKH A;  1GKX A;  2YYK A;  5M4N A;  4FF4 A;  3LGQ A;  3TTB A;  4P79 A;  2R05 A;  1U8V A;  5K3H A;  4L3X A;  3GNC A;  3AFE A;  4W9U A;  3BNJ A;  1Y8O A;  2RFQ A;  4MPE A;  3TZ2 A;  1SIR A;  4MP7 A;  3TZ4 A;  2PNR A;  4N5F A;  4M9A A;  3TOR A;  3SWO A;  3F29 A;  4J1V A;  2JBS A;  2ZDY A;  1IVH A;  3D9F A;  3OIB A;  3VKG A;  1IS2 A;  4X28 A;  4Q5B A;  1RP3 A;  2CJ5 A;  2IX6 A;  4KS9 A;  3EON A;  5K3G A;  3GM6 A;  4FF3 A;  2XQR B;  3Q24 A;  1Y0V A;  3II9 A;  3C3L A;  4DOY A;  3VKH A;  2OJQ A;  3MXL A;  2BU6 A;  2Q8H A;  4JEK A;  3RKH A;  4FF1 A;  4L3Y A;  1SC5 A;  3UU9 A;  4IRN A;  4MP2 A;  1FS9 A;  1XFU A;  2YYL A;  1BUC A;  3PFD A;  2XS8 A;  3U33 A;  1JM6 A;  1XG2 B;  2OEX A;  2ZDX A;  1RJ1 A;  2ZKJ A;  5BRM A;  2R0N A;  5B5W A;  3BNG A;  2CX9 A;  5EZ3 A;  4V26 A;  2E80 A;  4HKS A;  2IX5 A;  2CJ8 A;  3CRK A;  4G5E A;  2EBA A;  2J7A A; 
#chains in the Genus database with same CATH homology
 2VIG A;  2E81 A;  4Q17 A;  4IV6 A;  1GU6 A;  3D1I A;  2JIF A;  3M9V A;  2YYG A;  3FCJ A;  3MPI A;  2YYM A;  2A1T A;  2C12 A;  4Q1O A;  5K3I A;  1R2J A;  4U83 A;  4P13 A;  2WBI A;  1OAH A;  3MDD A;  4O5M A;  3FO3 A;  4XVX A;  1QDB A;  3P4T A;  3NF4 A;  3AFF A;  2JBT A;  3LG1 A;  2OT4 A;  3D9E A;  3OWM A;  4NXL A;  3D6B A;  2DDH A;  3EOM A;  4OO2 A;  1EGD A;  3SCE A;  1FS8 A;  2JBR A;  4L3Z A;  2R0M A;  3GQT A;  3BNF A;  1W07 A;  4ZXV A;  1EGE A;  3MMO A;  4WJY A;  4KCF A;  2Z1Q A;  3B96 A;  2DVL A;  2YYI A;  2VR0 A;  1EGC A;  3BNH A;  3MPJ A;  2RDZ A;  2UXW A;  3R7K A;  3SF6 A;  2OR0 A;  4RM7 A;  4Q5C A;  1UKW A;  2ZAF A;  2REH A;  3L1T A;  1SIQ A;  4Q4U A;  5K3J A;  2ZO5 A;  4X28 C;  3D9G A;  4L38 A;  3OWA A;  4HR3 A;  1RX0 A;  1UDY A;  3X0Y A;  3MDE A;  3D9D A;  1FS7 A;  4KTO A;  2FON A;  3S7W A;  3X0X A;  1T9G A;  1WS9 A;  4ZYJ A;  3HWC A;  2RF7 A;  4Q0T A;  2D29 A;  4L1F A;  2PG0 A;  2C0U A;  2YYJ A;  1JQI A;  3UBR A;  3SXQ A;  3MKH A;  2YYK A;  3LGQ A;  3TTB A;  4L3X A;  1U8V A;  5K3H A;  3GNC A;  3AFE A;  4W9U A;  3BNJ A;  2RFQ A;  1SIR A;  4N5F A;  4M9A A;  3TOR A;  3SWO A;  3F29 A;  2JBS A;  1IVH A;  3D9F A;  3OIB A;  1IS2 A;  4X28 A;  4Q5B A;  2IX6 A;  3EON A;  5K3G A;  3GM6 A;  3II9 A;  4DOY A;  3MXL A;  4JEK A;  3RKH A;  4L3Y A;  3UU9 A;  4IRN A;  1FS9 A;  2YYL A;  1BUC A;  3PFD A;  2R0N A;  3BNG A;  2CX9 A;  2E80 A;  2IX5 A;  4G5E A;  2EBA A;  2J7A A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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