5K3IA

Crystal structure of acyl-coa oxidase-1 in caenorhabditis elegans complexed with fad and atp
Total Genus 271
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
271
sequence length
668
structure length
661
Chain Sequence
VHLNKTIQEGDNPDLTAERLTATFDTHAMAAQIYGGEMRARRRREITAKLAEIPELHDSMPLPYMTREEKIMESARKLTVLTQRMSEIIDPTDAGELYHLNNEVLGIEGNPMALHGVMFIPALNAQASDEQQAKWLIRALRREIIGTYAQTEMGHGTNLQNLETTATYDIGTQEFVLHTPKITALKWWPGNLGKSSNYAVVVAHMYIKGKNFGPHTFMVPLRDEKTHKPLPGITIGDIGPKMAYNIVDNGFLGFNNYRIPRTNLLMRHTKVEADGTYIKPPAMVHVRSYMLTGQAIMLSYALNIATRYSAVRRQGQIDKNEPEVKVLEYQTQQHRLFPFIARAYAFQFAGAETVKLYERVLKEMKSGNVSLMADLHALTSGLKSVVTHQTGEGIEQARMACGGHGYSMASYISEIYGVAIGGCTYAGENMVMLLQLARYLVKSAALVKSGKASQLGPLVAYLGARSEPTSLIDRVPNGGITEYIKTFQHIAKRQTLKAANKFFGLMENGEKREIAWNKSSVELNRASRLHTRLFIVEAFARRVNEIGDITIKEALSDLLHLHVNYELLDVATYALEDGFMSSTQLDYVRDQLYFYLQKIRPNAVSLLDSWEFSDRELRSVLGRRDGHVYENLFKWAKESPLNKTDVLPSVDTYLKPMMEKA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
molecule keywords Acyl-coenzyme A oxidase
publication title Structural characterization of acyl-CoA oxidases reveals a direct link between pheromone biosynthesis and metabolic state in Caenorhabditis elegans.
pubmed doi rcsb
source organism Caenorhabditis elegans
total genus 271
structure length 661
sequence length 668
chains with identical sequence B, C, D, E, F, G, H
ec nomenclature
pdb deposition date 2016-05-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01756 ACOX Acyl-CoA oxidase
A PF02770 Acyl-CoA_dh_M Acyl-CoA dehydrogenase, middle domain
A PF14749 Acyl-CoA_ox_N Acyl-coenzyme A oxidase N-terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.540.10 Mainly Alpha Orthogonal Bundle Butyryl-Coa Dehydrogenase, subunit A; domain 1 Acyl-CoA dehydrogenase/oxidase, N-terminal domain 5k3iA01
1.20.140.10 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A; domain 3 Butyryl-CoA Dehydrogenase, subunit A, domain 3 5k3iA03
1.20.140.10 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A; domain 3 Butyryl-CoA Dehydrogenase, subunit A, domain 3 5k3iA04
2.40.110.10 Mainly Beta Beta Barrel Butyryl-CoA Dehydrogenase, subunit A; domain 2 Butyryl-CoA Dehydrogenase, subunit A, domain 2 5k3iA02
4JEKA 1FS8A 2RDZA 1GU6A 3TORA 2UXWA 3D1IA 4O5MA 3L1TA 2C12A 3R7KA 2VIGA 2ZO5A 1FS9A 2WBIA 3RKHA 3F29A 4IRNA 3AFFA 3FCJA 4L1FA 5K3JA 1WS9A 1T9GA 4KCFA 4N5FA 2D29A 4RM7A 1SIRA 2RF7A 4Q5BA 4U83A 1EGDA 3GNCA 2DDHA 1EGCA 4DOYA 3NF4A 5K3IA 3D9GA 3D9DA 3BNGA 3PFDA 5K3HA 3D9EA 2CX9A 3GM6A 1IS2A 2FONA 3P4TA 3SF6A 3BNJA 3UU9A 2Z1QA 3UBRA 3X0XA 2YYGA 2DVLA 3FO3A 1R2JA 4L3YA 4P13A 1FS7A 2IX5A 3SCEA 3OIBA 3X0YA 4M9AA 1RX0A 3EONA 2YYMA 4Q1OA 4OO2A 3TTBA 1SIQA 4ZXVA 2VR0A 4Q5CA 3LGQA 1EGEA 3D6BA 3MDEA 3SWOA 1IVHA 2IX6A 3OWAA 2JBSA 2REHA 3MPIA 3HWCA 3AFEA 4Q17A 1QDBA 2RFQA 2JIFA 2R0MA 3MPJA 3LG1A 2OT4A 4WJYA 2E80A 2PG0A 4KTOA 5K3GA 1UDYA 4NXLA 3MMOA 4L38A 3SXQA 2J7AA 4Q0TA 3M9VA 3S7WA 2EBAA 2JBRA 3MXLA 3MKHA 2JBTA 2C0UA 4IV6A 4HR3A 2OR0A 4XVXA 3OWMA 3BNHA 2ZAFA 4W9UA 4X28A 3BNFA 1W07A 4ZYJA 3EOMA 4L3XA 1OAHA 2YYKA 4G5EA 1JQIA 4L3ZA 3GQTA 4X28C 2YYIA 3MDDA 3D9FA 1BUCA 1UKWA 2A1TA 3B96A 2R0NA 2YYJA 4Q4UA 2E81A 3II9A 1U8VA 2YYLA
chains in the Genus database with same CATH superfamily
4JEKA 1FS8A 2E0AA 2RDZA 4P79A 2R03A 1GU6A 4F0XA 3TORA 3TZ4A 2UXWA 2R05A 4O5MA 3D1IA 3L1TA 2C12A 3R7KA 3D2RA 4HKRA 3DJLA 2EBHX 4DZYA 2AZEA 2VIGA 3U33A 4FF2A 2ZO5A 1FS9A 2WBIA 3RKHA 3F29A 4IRNA 3AFFA 3FCJA 4L1FA 1RJ4A 5K3JA 1WS9A 1XG2B 3KMLA 4MP2A 5GJVE 2BTZA 2PNRA 2EC5A 1T9GA 1K93A 2OEVA 4KCFA 1S26A 4N5FA 2GBBA 3UU9A 3Q0AA 2D29A 1RP3A 1XFUA 4RM7A 2BU2A 2OJQA 2YGWA 1SIRA 2RF7A 5M4NA 1XFZA 2CJ8A 4Q5BA 4JIZA 5BRKA 2EBFX 3N0RA 4HKSA 4H7QA 2QR4A 3X29A 2XS1A 2CJ7A 4U83A 1XFYA 1EGDA 2R02A 3GNCA 2DDHA 1EGCA 4DOYA 3NF4A 5K3IA 1GJVA 2YYLA 3D9GA 3D9DA 1Y8NA 2HJNA 4G97A 3Q24A 2AO2A 5EZ3A 3BNGA 1LVCA 3PFDA 4FF1A 5K3HA 2XS8A 3D9EA 2CX9A 1SK6A 3GM6A 2BU7A 1IS2A 2FONA 3P4TA 3SF6A 3BNJA 4H85A 2Z1QA 2Q8FA 3UBRA 3X0XA 2YYGA 2Q8GA 3VADA 2DVLA 2CJ4A 3FO3A 1R2JA 1XFXA 4P13A 1FS7A 4KS9A 2IX5A 4L3YA 4MPCA 3SCEA 3Q23A 3OIBA 3X0YA 4M9AA 1RX0A 3EONA 2BU5A 2YYMA 2PO4A 4Q1OA 4OO2A 2BU8A 3TTBA 4E02A 1SIQA 2VF1A 1Y8OA 4ZXVA 2VR0A 4Q5CA 5B5VA 5B5WA 1GKXA 1R3BA 3LGQA 1EGEA 3Q22A 3CE2A 3D6BA 3MDEA 3SWOA 4JIOA 1IVHA 2IX6A 1SC5A 4LQSB 3OWAA 3C2PA 4AKGA 3C46A 2JBSA 1PI1A 4AI6A 2REHA 4E00A 3MPIA 2ZDXA 2ZDYA 4MPNA 3HWCA 3AFEA 4Q17A 5B6BA 1QDBA 2BU6A 4LQQB 4KSFA 2RFQA 2JIFA 2R0MA 3MPJA 4MP7A 2Q8IA 3LG1A 2OT4A 4WJYA 2E80A 2PG0A 4KTOA 5K3GA 1UDYA 4NXLA 1PK0A 3MMOA 4L38A 3SXQA 2J7AA 4Q0TA 3M9VA 2CJ6A 4QICA 4FF4A 3S7WA 3VKGA 2EBAA 1XFVA 1X91A 4MPEA 5GJWE 2JBRA 3C3LA 3MXLA 1K90A 3TZ0A 5M4MA 3MKHA 5J6AA 5M4KA 2JBTA 2C0UA 4E01A 3CRKA 4IV6A 5J71A 4HR3A 2OR0A 4XVXA 2FP1A 3OWMA 4FZ4A 3BNHA 2ZAFA 4W9UA 4X28A 1JM6A 2LFWA 3BNFA 3CRLA 1W07A 4ZYJA 4FF3A 3EOMA 4L3XA 1OAHA 3VKHA 1RJ1A 2YYKA 5M4PA 4G5EA 1JQIA 1K8TA 1X8ZA 4L3ZA 3TZ2A 4V25A 3GQTA 4H81A 2OEXA 4X28C 2F6LA 1GKZA 4AKHA 2YYIA 2ZKJA 3MDDA 1Y8PA 4KSAA 3D9FA 2CJ5A 4J1VA 1BUCA 1X90A 2Q8HA 1UKWA 4V26A 2A1TA 3B96A 2R0NA 3TZ5A 2YYJA 5BRMA 1XFWA 4Q4UA 2FP2A 2E81A 3II9A 4AKIA 1U8VA 2XQRB 1Y0VA
chains in the Genus database with same CATH topology
4JEKA 1FS8A 2RDZA 1GU6A 3TORA 2UXWA 3D1IA 4O5MA 3L1TA 2C12A 3R7KA 2VIGA 2ZO5A 1FS9A 2WBIA 3RKHA 3F29A 4IRNA 3AFFA 3FCJA 4L1FA 5K3JA 1WS9A 1T9GA 4KCFA 4N5FA 2D29A 4RM7A 1SIRA 2RF7A 4Q5BA 4U83A 1EGDA 3GNCA 2DDHA 1EGCA 4DOYA 3NF4A 5K3IA 3D9GA 3D9DA 3BNGA 3PFDA 5K3HA 3D9EA 2CX9A 3GM6A 1IS2A 2FONA 3P4TA 3SF6A 3BNJA 3UU9A 2Z1QA 3UBRA 3X0XA 2YYGA 2DVLA 3FO3A 1R2JA 4L3YA 4P13A 1FS7A 2IX5A 3SCEA 3OIBA 3X0YA 4M9AA 1RX0A 3EONA 2YYMA 4Q1OA 4OO2A 3TTBA 1SIQA 4ZXVA 2VR0A 4Q5CA 3LGQA 1EGEA 3D6BA 3MDEA 3SWOA 1IVHA 2IX6A 3OWAA 2JBSA 2REHA 3MPIA 3HWCA 3AFEA 4Q17A 1QDBA 2RFQA 2JIFA 2R0MA 3MPJA 3LG1A 2OT4A 4WJYA 2E80A 2PG0A 4KTOA 5K3GA 1UDYA 4NXLA 3MMOA 4L38A 3SXQA 2J7AA 4Q0TA 3M9VA 3S7WA 2EBAA 2JBRA 3MXLA 3MKHA 2JBTA 2C0UA 4IV6A 4HR3A 2OR0A 4XVXA 3OWMA 3BNHA 2ZAFA 4W9UA 4X28A 3BNFA 1W07A 4ZYJA 3EOMA 4L3XA 1OAHA 2YYKA 4G5EA 1JQIA 4L3ZA 3GQTA 4X28C 2YYIA 3MDDA 3D9FA 1BUCA 1UKWA 2A1TA 3B96A 2R0NA 2YYJA 4Q4UA 2E81A 3II9A 1U8VA 2YYLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4JEK A;  1FS8 A;  2RDZ A;  1GU6 A;  3TOR A;  2UXW A;  3D1I A;  4O5M A;  3L1T A;  2C12 A;  3R7K A;  2VIG A;  2ZO5 A;  1FS9 A;  2WBI A;  3RKH A;  3F29 A;  4IRN A;  3AFF A;  3FCJ A;  4L1F A;  5K3J A;  1WS9 A;  1T9G A;  4KCF A;  4N5F A;  2D29 A;  4RM7 A;  1SIR A;  2RF7 A;  4Q5B A;  4U83 A;  1EGD A;  3GNC A;  2DDH A;  1EGC A;  4DOY A;  3NF4 A;  5K3I A;  3D9G A;  3D9D A;  3BNG A;  3PFD A;  5K3H A;  3D9E A;  2CX9 A;  3GM6 A;  1IS2 A;  2FON A;  3P4T A;  3SF6 A;  3BNJ A;  3UU9 A;  2Z1Q A;  3UBR A;  3X0X A;  2YYG A;  2DVL A;  3FO3 A;  1R2J A;  4L3Y A;  4P13 A;  1FS7 A;  2IX5 A;  3SCE A;  3OIB A;  3X0Y A;  4M9A A;  1RX0 A;  3EON A;  2YYM A;  4Q1O A;  4OO2 A;  3TTB A;  1SIQ A;  4ZXV A;  2VR0 A;  4Q5C A;  3LGQ A;  1EGE A;  3D6B A;  3MDE A;  3SWO A;  1IVH A;  2IX6 A;  3OWA A;  2JBS A;  2REH A;  3MPI A;  3HWC A;  3AFE A;  4Q17 A;  1QDB A;  2RFQ A;  2JIF A;  2R0M A;  3MPJ A;  3LG1 A;  2OT4 A;  4WJY A;  2E80 A;  2PG0 A;  4KTO A;  5K3G A;  1UDY A;  4NXL A;  3MMO A;  4L38 A;  3SXQ A;  2J7A A;  4Q0T A;  3M9V A;  3S7W A;  2EBA A;  2JBR A;  3MXL A;  3MKH A;  2JBT A;  2C0U A;  4IV6 A;  4HR3 A;  2OR0 A;  4XVX A;  3OWM A;  3BNH A;  2ZAF A;  4W9U A;  4X28 A;  3BNF A;  1W07 A;  4ZYJ A;  3EOM A;  4L3X A;  1OAH A;  2YYK A;  4G5E A;  1JQI A;  4L3Z A;  3GQT A;  4X28 C;  2YYI A;  3MDD A;  3D9F A;  1BUC A;  1UKW A;  2A1T A;  3B96 A;  2R0N A;  2YYJ A;  4Q4U A;  2E81 A;  3II9 A;  1U8V A;  2YYL A; 
#chains in the Genus database with same CATH topology
 4JEK A;  1FS8 A;  2E0A A;  2RDZ A;  4P79 A;  2R03 A;  1GU6 A;  4F0X A;  3TOR A;  3TZ4 A;  2UXW A;  2R05 A;  4O5M A;  3D1I A;  3L1T A;  2C12 A;  3R7K A;  3D2R A;  4HKR A;  3DJL A;  2EBH X;  4DZY A;  2AZE A;  2VIG A;  3U33 A;  4FF2 A;  2ZO5 A;  1FS9 A;  2WBI A;  3RKH A;  3F29 A;  4IRN A;  3AFF A;  3FCJ A;  4L1F A;  1RJ4 A;  5K3J A;  1WS9 A;  1XG2 B;  3KML A;  4MP2 A;  5GJV E;  2BTZ A;  2PNR A;  2EC5 A;  1T9G A;  1K93 A;  2OEV A;  4KCF A;  1S26 A;  4N5F A;  2GBB A;  3UU9 A;  3Q0A A;  2D29 A;  1RP3 A;  1XFU A;  4RM7 A;  2BU2 A;  2OJQ A;  2YGW A;  1SIR A;  2RF7 A;  5M4N A;  1XFZ A;  2CJ8 A;  4Q5B A;  4JIZ A;  5BRK A;  2EBF X;  3N0R A;  4HKS A;  4H7Q A;  2QR4 A;  3X29 A;  2XS1 A;  2CJ7 A;  4U83 A;  1XFY A;  1EGD A;  2R02 A;  3GNC A;  2DDH A;  1EGC A;  4DOY A;  3NF4 A;  5K3I A;  1GJV A;  2YYL A;  3D9G A;  3D9D A;  1Y8N A;  2HJN A;  4G97 A;  3Q24 A;  2AO2 A;  5EZ3 A;  3BNG A;  1LVC A;  3PFD A;  4FF1 A;  5K3H A;  2XS8 A;  3D9E A;  2CX9 A;  1SK6 A;  3GM6 A;  2BU7 A;  1IS2 A;  2FON A;  3P4T A;  3SF6 A;  3BNJ A;  4H85 A;  2Z1Q A;  2Q8F A;  3UBR A;  3X0X A;  2YYG A;  2Q8G A;  3VAD A;  2DVL A;  2CJ4 A;  3FO3 A;  1R2J A;  1XFX A;  4P13 A;  1FS7 A;  4KS9 A;  2IX5 A;  4L3Y A;  4MPC A;  3SCE A;  3Q23 A;  3OIB A;  3X0Y A;  4M9A A;  1RX0 A;  3EON A;  2BU5 A;  2YYM A;  2PO4 A;  4Q1O A;  4OO2 A;  2BU8 A;  3TTB A;  4E02 A;  1SIQ A;  2VF1 A;  1Y8O A;  4ZXV A;  2VR0 A;  4Q5C A;  5B5V A;  5B5W A;  1GKX A;  1R3B A;  3LGQ A;  1EGE A;  3Q22 A;  3CE2 A;  3D6B A;  3MDE A;  3SWO A;  4JIO A;  1IVH A;  2IX6 A;  1SC5 A;  4LQS B;  3OWA A;  3C2P A;  4AKG A;  3C46 A;  2JBS A;  1PI1 A;  4AI6 A;  2REH A;  4E00 A;  3MPI A;  2ZDX A;  2ZDY A;  4MPN A;  3HWC A;  3AFE A;  4Q17 A;  5B6B A;  1QDB A;  2BU6 A;  4LQQ B;  4KSF A;  2RFQ A;  2JIF A;  2R0M A;  3MPJ A;  4MP7 A;  2Q8I A;  3LG1 A;  2OT4 A;  4WJY A;  2E80 A;  2PG0 A;  4KTO A;  5K3G A;  1UDY A;  4NXL A;  1PK0 A;  3MMO A;  4L38 A;  3SXQ A;  2J7A A;  4Q0T A;  3M9V A;  2CJ6 A;  4QIC A;  4FF4 A;  3S7W A;  3VKG A;  2EBA A;  1XFV A;  1X91 A;  4MPE A;  5GJW E;  2JBR A;  3C3L A;  3MXL A;  1K90 A;  3TZ0 A;  5M4M A;  3MKH A;  5J6A A;  5M4K A;  2JBT A;  2C0U A;  4E01 A;  3CRK A;  4IV6 A;  5J71 A;  4HR3 A;  2OR0 A;  4XVX A;  2FP1 A;  3OWM A;  4FZ4 A;  3BNH A;  2ZAF A;  4W9U A;  4X28 A;  1JM6 A;  2LFW A;  3BNF A;  3CRL A;  1W07 A;  4ZYJ A;  4FF3 A;  3EOM A;  4L3X A;  1OAH A;  3VKH A;  1RJ1 A;  2YYK A;  5M4P A;  4G5E A;  1JQI A;  1K8T A;  1X8Z A;  4L3Z A;  3TZ2 A;  4V25 A;  3GQT A;  4H81 A;  2OEX A;  4X28 C;  2F6L A;  1GKZ A;  4AKH A;  2YYI A;  2ZKJ A;  3MDD A;  1Y8P A;  4KSA A;  3D9F A;  2CJ5 A;  4J1V A;  1BUC A;  1X90 A;  2Q8H A;  1UKW A;  4V26 A;  2A1T A;  3B96 A;  2R0N A;  3TZ5 A;  2YYJ A;  5BRM A;  1XFW A;  4Q4U A;  2FP2 A;  2E81 A;  3II9 A;  4AKI A;  1U8V A;  2XQR B;  1Y0V A; 
#chains in the Genus database with same CATH homology
 4JEK A;  1FS8 A;  2RDZ A;  1GU6 A;  3TOR A;  2UXW A;  3D1I A;  4O5M A;  3L1T A;  2C12 A;  3R7K A;  2VIG A;  2ZO5 A;  1FS9 A;  2WBI A;  3RKH A;  3F29 A;  4IRN A;  3AFF A;  3FCJ A;  4L1F A;  5K3J A;  1WS9 A;  1T9G A;  4KCF A;  4N5F A;  2D29 A;  4RM7 A;  1SIR A;  2RF7 A;  4Q5B A;  4U83 A;  1EGD A;  3GNC A;  2DDH A;  1EGC A;  4DOY A;  3NF4 A;  5K3I A;  3D9G A;  3D9D A;  3BNG A;  3PFD A;  5K3H A;  3D9E A;  2CX9 A;  3GM6 A;  1IS2 A;  2FON A;  3P4T A;  3SF6 A;  3BNJ A;  3UU9 A;  2Z1Q A;  3UBR A;  3X0X A;  2YYG A;  2DVL A;  3FO3 A;  1R2J A;  4L3Y A;  4P13 A;  1FS7 A;  2IX5 A;  3SCE A;  3OIB A;  3X0Y A;  4M9A A;  1RX0 A;  3EON A;  2YYM A;  4Q1O A;  4OO2 A;  3TTB A;  1SIQ A;  4ZXV A;  2VR0 A;  4Q5C A;  3LGQ A;  1EGE A;  3D6B A;  3MDE A;  3SWO A;  1IVH A;  2IX6 A;  3OWA A;  2JBS A;  2REH A;  3MPI A;  3HWC A;  3AFE A;  4Q17 A;  1QDB A;  2RFQ A;  2JIF A;  2R0M A;  3MPJ A;  3LG1 A;  2OT4 A;  4WJY A;  2E80 A;  2PG0 A;  4KTO A;  5K3G A;  1UDY A;  4NXL A;  3MMO A;  4L38 A;  3SXQ A;  2J7A A;  4Q0T A;  3M9V A;  3S7W A;  2EBA A;  2JBR A;  3MXL A;  3MKH A;  2JBT A;  2C0U A;  4IV6 A;  4HR3 A;  2OR0 A;  4XVX A;  3OWM A;  3BNH A;  2ZAF A;  4W9U A;  4X28 A;  3BNF A;  1W07 A;  4ZYJ A;  3EOM A;  4L3X A;  1OAH A;  2YYK A;  4G5E A;  1JQI A;  4L3Z A;  3GQT A;  4X28 C;  2YYI A;  3MDD A;  3D9F A;  1BUC A;  1UKW A;  2A1T A;  3B96 A;  2R0N A;  2YYJ A;  4Q4U A;  2E81 A;  3II9 A;  1U8V A;  2YYL A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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