3EOMA

2.4 a crystal structure of native glutaryl-coa dehydrogenase from burkholderia pseudomallei
Total Genus 148
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
148
sequence length
392
structure length
387
Chain Sequence
ATFHWDDPLLLDQQLADDERMVRDAAHAYAQGKLAPRVTEAFRHETTDAAIFREMGEIGLLGPTIPEQYGGPGLDYVSYGLIAREVERVDSGYRSMMSVQSSLVMVPIFEFGSDAQKEKYLPKLATGEWIGCFGLTEPDPGSMVTRARKVPGGYSLSGSKMWITNSPIADVFVVWAKLDEDGRDEIRGFILEKGCKGLSAPAIHGKVGLRASITGEIVLDEAFVPEENILPHVKGLRGPFTCLNSARYGIAWGALGAAESCWHIARQYVLDRKQFGRPLAANQLIQKKLADMQTEITLGLQGVLRLGRMKDEGTAAVEITSIMKRNSCGKALDIARLARDMLGGNGSDEFGVARHLVNLEVVNTYEGTHDIHALILGRAQTGIQAFF
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
source organism Burkholderia pseudomallei
publication title Probing conformational states of glutaryl-CoA dehydrogenase by fragment screening.
pubmed doi rcsb
molecule keywords Glutaryl-CoA dehydrogenase
total genus 148
structure length 387
sequence length 392
chains with identical sequence B, C, D
ec nomenclature ec 1.3.99.7: Transferred entry: 1.3.8.6.
pdb deposition date 2008-09-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00441 Acyl-CoA_dh_1 Acyl-CoA dehydrogenase, C-terminal domain
A PF02770 Acyl-CoA_dh_M Acyl-CoA dehydrogenase, middle domain
A PF02771 Acyl-CoA_dh_N Acyl-CoA dehydrogenase, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.540.10 Mainly Alpha Orthogonal Bundle Butyryl-Coa Dehydrogenase, subunit A; domain 1 Acyl-CoA dehydrogenase/oxidase, N-terminal domain 3eomA01
1.20.140.10 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A; domain 3 Butyryl-CoA Dehydrogenase, subunit A, domain 3 3eomA03
2.40.110.10 Mainly Beta Beta Barrel Butyryl-CoA Dehydrogenase, subunit A; domain 2 Butyryl-CoA Dehydrogenase, subunit A, domain 2 3eomA02
1FS8A 3LG1A 3D9GA 2IX6A 1GU6A 4Q5CA 3RKHA 1OAHA 4L38A 2YYMA 1IS2A 4X28C 3OWMA 5K3GA 2C0UA 4L1FA 3S7WA 2VR0A 2OR0A 4KTOA 4KCFA 2JBSA 3UU9A 3PFDA 4L3XA 2PG0A 2WBIA 2YYJA 2YYGA 3OWAA 3MMOA 1SIQA 2D29A 4O5MA 2JBRA 3FO3A 1UDYA 4X28A 4IRNA 2VIGA 3D9DA 2REHA 4NXLA 1T9GA 4WJYA 2R0NA 4L3YA 1EGEA 3UBRA 4IV6A 4OO2A 1R2JA 4Q17A 4RM7A 3MKHA 1FS7A 1U8VA 3B96A 4W9UA 1RX0A 4Q5BA 3MDDA 3D9FA 2IX5A 4Q4UA 3D6BA 3EONA 2DVLA 4N5FA 3MDEA 4M9AA 3SF6A 2YYIA 2J7AA 3M9VA 3MXLA 3X0YA 3D9EA 3AFEA 3LGQA 3OIBA 2RDZA 1W07A 3F29A 3EOMA 1QDBA 2OT4A 5K3IA 4ZXVA 2ZO5A 3TTBA 4G5EA 3BNJA 3L1TA 3SCEA 2E81A 2CX9A 2FONA 3NF4A 3AFFA 3SXQA 2Z1QA 2YYLA 3SWOA 2DDHA 5K3HA 1UKWA 2JIFA 2R0MA 3X0XA 2YYKA 2UXWA 3GNCA 1WS9A 3R7KA 4P13A 3HWCA 5K3JA 1BUCA 3GM6A 2JBTA 4HR3A 3FCJA 3GQTA 4DOYA 2C12A 3P4TA 2RF7A 2RFQA 2ZAFA 2A1TA 3MPJA 2E80A 3MPIA 1FS9A 1IVHA 4JEKA 1SIRA 4Q1OA 3II9A 3BNFA 3D1IA 4XVXA 4L3ZA 1EGDA 1EGCA 4ZYJA 1JQIA 3BNHA 4U83A 3TORA 4Q0TA 2EBAA 3BNGA
chains in the Genus database with same CATH superfamily
1Y8PA 1GJVA 4KSAA 5B5WA 4KSFA 1FS8A 5B6BA 3LG1A 4FF1A 3VKHA 1X8ZA 3D9GA 2BU2A 5BRMA 2IX6A 1GU6A 3D2RA 4Q5CA 1OAHA 3RKHA 3TZ0A 4L38A 4FF4A 4AKIA 4E01A 2YYMA 4DZYA 4AKHA 2LFWA 1IS2A 4X28C 3OWMA 5J71A 5K3GA 4JIZA 3CE2A 2C0UA 4L1FA 3S7WA 2VR0A 2OR0A 4KTOA 4KCFA 2AZEA 2JBSA 2BU7A 1XFWA 2CJ6A 3UU9A 4HKSA 3PFDA 2Q8GA 4E02A 4L3XA 2PG0A 2CJ5A 3TZ4A 2WBIA 1GKZA 2YYJA 2Q8IA 2YYGA 5M4PA 3OWAA 3MMOA 1SIQA 2D29A 4O5MA 4MPNA 4V26A 3TZ2A 2JBRA 3FO3A 3N0RA 1UDYA 4X28A 2OEVA 4IRNA 2VIGA 2OJQA 3D9DA 2REHA 4NXLA 2PNRA 2ZKJA 1T9GA 4WJYA 3Q22A 4JIOA 1R3BA 2CJ7A 2R05A 4KS9A 2CJ8A 2R0NA 1XFZA 2YGWA 3CRKA 1EGEA 1RJ4A 4L3YA 3UBRA 4IV6A 4OO2A 1R2JA 4Q17A 4RM7A 3MKHA 4F0XA 1FS7A 2ZDYA 1X90A 4QICA 1U8VA 1XFVA 3B96A 2QR4A 2XQRB 4W9UA 1RX0A 3C2PA 4HKRA 4Q5BA 3MDDA 3D9FA 2IX5A 4Q4UA 1RP3A 3D6BA 3EONA 2DVLA 4N5FA 2ZDXA 3MDEA 1XFYA 4J1VA 4M9AA 3SF6A 2EBFX 4FF2A 2YYIA 2EBHX 4P79A 2J7AA 3M9VA 3MXLA 2BU8A 4AKGA 1PK0A 4H81A 3X0YA 4LQSB 2Q8FA 5M4KA 3D9EA 3AFEA 1JM6A 2FP2A 3LGQA 4MPEA 5BRKA 3OIBA 1SK6A 2RDZA 4FF3A 5EZ3A 1XFUA 1W07A 2CJ4A 3F29A 3EOMA 1K93A 2PO4A 1QDBA 1Y0VA 2VF1A 2BU5A 1K8TA 1Y8NA 5K3IA 4ZXVA 2AO2A 2ZO5A 2OT4A 3TTBA 3X29A 3Q23A 3U33A 4G5EA 3BNJA 2R02A 1X91A 3C3LA 3L1TA 5B5VA 3SCEA 1SC5A 4MPCA 2GBBA 2E81A 2OEXA 3TZ5A 2CX9A 2FONA 2R03A 3NF4A 4LQQB 3CRLA 4MP7A 3AFFA 3SXQA 3Q24A 2Z1QA 2YYLA 3SWOA 2DDHA 5K3HA 1UKWA 2FP1A 2JIFA 2R0MA 3X0XA 3Q0AA 2YYKA 3DJLA 2UXWA 3KMLA 3GNCA 4V25A 1WS9A 5GJVE 2F6LA 2EC5A 1K90A 3R7KA 2XS8A 4P13A 4G97A 3HWCA 3C46A 5K3JA 1BUCA 2BU6A 3GM6A 3VKGA 2JBTA 4H85A 4HR3A 4H7QA 5M4MA 3FCJA 3GQTA 1GKXA 1XG2B 4DOYA 2C12A 3P4TA 2RF7A 2BTZA 2RFQA 2ZAFA 2A1TA 3MPJA 2E80A 3MPIA 1FS9A 1IVHA 4AI6A 5GJWE 2HJNA 4JEKA 1SIRA 5J6AA 4MP2A 3II9A 3BNFA 4Q1OA 5M4NA 1PI1A 3D1IA 1LVCA 1RJ1A 1XFXA 1S26A 1Y8OA 2E0AA 4XVXA 4FZ4A 2XS1A 4L3ZA 1EGDA 1EGCA 4ZYJA 2Q8HA 4E00A 1JQIA 3BNHA 4U83A 3TORA 3VADA 4Q0TA 2EBAA 3BNGA
chains in the Genus database with same CATH topology
1FS8A 3LG1A 3D9GA 2IX6A 1GU6A 4Q5CA 3RKHA 1OAHA 4L38A 2YYMA 1IS2A 4X28C 3OWMA 5K3GA 2C0UA 4L1FA 3S7WA 2VR0A 2OR0A 4KTOA 4KCFA 2JBSA 3UU9A 3PFDA 4L3XA 2PG0A 2WBIA 2YYJA 2YYGA 3OWAA 3MMOA 1SIQA 2D29A 4O5MA 2JBRA 3FO3A 1UDYA 4X28A 4IRNA 2VIGA 3D9DA 2REHA 4NXLA 1T9GA 4WJYA 2R0NA 4L3YA 1EGEA 3UBRA 4IV6A 4OO2A 1R2JA 4Q17A 4RM7A 3MKHA 1FS7A 1U8VA 3B96A 4W9UA 1RX0A 4Q5BA 3MDDA 3D9FA 2IX5A 4Q4UA 3D6BA 3EONA 2DVLA 4N5FA 3MDEA 4M9AA 3SF6A 2YYIA 2J7AA 3M9VA 3MXLA 3X0YA 3D9EA 3AFEA 3LGQA 3OIBA 2RDZA 1W07A 3F29A 3EOMA 1QDBA 2OT4A 5K3IA 4ZXVA 2ZO5A 3TTBA 4G5EA 3BNJA 3L1TA 3SCEA 2E81A 2CX9A 2FONA 3NF4A 3AFFA 3SXQA 2Z1QA 2YYLA 3SWOA 2DDHA 5K3HA 1UKWA 2JIFA 2R0MA 3X0XA 2YYKA 2UXWA 3GNCA 1WS9A 3R7KA 4P13A 3HWCA 5K3JA 1BUCA 3GM6A 2JBTA 4HR3A 3FCJA 3GQTA 4DOYA 2C12A 3P4TA 2RF7A 2RFQA 2ZAFA 2A1TA 3MPJA 2E80A 3MPIA 1FS9A 1IVHA 4JEKA 1SIRA 4Q1OA 3II9A 3BNFA 3D1IA 4XVXA 4L3ZA 1EGDA 1EGCA 4ZYJA 1JQIA 3BNHA 4U83A 3TORA 4Q0TA 2EBAA 3BNGA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1FS8 A;  3LG1 A;  3D9G A;  2IX6 A;  1GU6 A;  4Q5C A;  3RKH A;  1OAH A;  4L38 A;  2YYM A;  1IS2 A;  4X28 C;  3OWM A;  5K3G A;  2C0U A;  4L1F A;  3S7W A;  2VR0 A;  2OR0 A;  4KTO A;  4KCF A;  2JBS A;  3UU9 A;  3PFD A;  4L3X A;  2PG0 A;  2WBI A;  2YYJ A;  2YYG A;  3OWA A;  3MMO A;  1SIQ A;  2D29 A;  4O5M A;  2JBR A;  3FO3 A;  1UDY A;  4X28 A;  4IRN A;  2VIG A;  3D9D A;  2REH A;  4NXL A;  1T9G A;  4WJY A;  2R0N A;  4L3Y A;  1EGE A;  3UBR A;  4IV6 A;  4OO2 A;  1R2J A;  4Q17 A;  4RM7 A;  3MKH A;  1FS7 A;  1U8V A;  3B96 A;  4W9U A;  1RX0 A;  4Q5B A;  3MDD A;  3D9F A;  2IX5 A;  4Q4U A;  3D6B A;  3EON A;  2DVL A;  4N5F A;  3MDE A;  4M9A A;  3SF6 A;  2YYI A;  2J7A A;  3M9V A;  3MXL A;  3X0Y A;  3D9E A;  3AFE A;  3LGQ A;  3OIB A;  2RDZ A;  1W07 A;  3F29 A;  3EOM A;  1QDB A;  2OT4 A;  5K3I A;  4ZXV A;  2ZO5 A;  3TTB A;  4G5E A;  3BNJ A;  3L1T A;  3SCE A;  2E81 A;  2CX9 A;  2FON A;  3NF4 A;  3AFF A;  3SXQ A;  2Z1Q A;  2YYL A;  3SWO A;  2DDH A;  5K3H A;  1UKW A;  2JIF A;  2R0M A;  3X0X A;  2YYK A;  2UXW A;  3GNC A;  1WS9 A;  3R7K A;  4P13 A;  3HWC A;  5K3J A;  1BUC A;  3GM6 A;  2JBT A;  4HR3 A;  3FCJ A;  3GQT A;  4DOY A;  2C12 A;  3P4T A;  2RF7 A;  2RFQ A;  2ZAF A;  2A1T A;  3MPJ A;  2E80 A;  3MPI A;  1FS9 A;  1IVH A;  4JEK A;  1SIR A;  4Q1O A;  3II9 A;  3BNF A;  3D1I A;  4XVX A;  4L3Z A;  1EGD A;  1EGC A;  4ZYJ A;  1JQI A;  3BNH A;  4U83 A;  3TOR A;  4Q0T A;  2EBA A;  3BNG A; 
#chains in the Genus database with same CATH topology
 1Y8P A;  1GJV A;  4KSA A;  5B5W A;  4KSF A;  1FS8 A;  5B6B A;  3LG1 A;  4FF1 A;  3VKH A;  1X8Z A;  3D9G A;  2BU2 A;  5BRM A;  2IX6 A;  1GU6 A;  3D2R A;  4Q5C A;  1OAH A;  3RKH A;  3TZ0 A;  4L38 A;  4FF4 A;  4AKI A;  4E01 A;  2YYM A;  4DZY A;  4AKH A;  2LFW A;  1IS2 A;  4X28 C;  3OWM A;  5J71 A;  5K3G A;  4JIZ A;  3CE2 A;  2C0U A;  4L1F A;  3S7W A;  2VR0 A;  2OR0 A;  4KTO A;  4KCF A;  2AZE A;  2JBS A;  2BU7 A;  1XFW A;  2CJ6 A;  3UU9 A;  4HKS A;  3PFD A;  2Q8G A;  4E02 A;  4L3X A;  2PG0 A;  2CJ5 A;  3TZ4 A;  2WBI A;  1GKZ A;  2YYJ A;  2Q8I A;  2YYG A;  5M4P A;  3OWA A;  3MMO A;  1SIQ A;  2D29 A;  4O5M A;  4MPN A;  4V26 A;  3TZ2 A;  2JBR A;  3FO3 A;  3N0R A;  1UDY A;  4X28 A;  2OEV A;  4IRN A;  2VIG A;  2OJQ A;  3D9D A;  2REH A;  4NXL A;  2PNR A;  2ZKJ A;  1T9G A;  4WJY A;  3Q22 A;  4JIO A;  1R3B A;  2CJ7 A;  2R05 A;  4KS9 A;  2CJ8 A;  2R0N A;  1XFZ A;  2YGW A;  3CRK A;  1EGE A;  1RJ4 A;  4L3Y A;  3UBR A;  4IV6 A;  4OO2 A;  1R2J A;  4Q17 A;  4RM7 A;  3MKH A;  4F0X A;  1FS7 A;  2ZDY A;  1X90 A;  4QIC A;  1U8V A;  1XFV A;  3B96 A;  2QR4 A;  2XQR B;  4W9U A;  1RX0 A;  3C2P A;  4HKR A;  4Q5B A;  3MDD A;  3D9F A;  2IX5 A;  4Q4U A;  1RP3 A;  3D6B A;  3EON A;  2DVL A;  4N5F A;  2ZDX A;  3MDE A;  1XFY A;  4J1V A;  4M9A A;  3SF6 A;  2EBF X;  4FF2 A;  2YYI A;  2EBH X;  4P79 A;  2J7A A;  3M9V A;  3MXL A;  2BU8 A;  4AKG A;  1PK0 A;  4H81 A;  3X0Y A;  4LQS B;  2Q8F A;  5M4K A;  3D9E A;  3AFE A;  1JM6 A;  2FP2 A;  3LGQ A;  4MPE A;  5BRK A;  3OIB A;  1SK6 A;  2RDZ A;  4FF3 A;  5EZ3 A;  1XFU A;  1W07 A;  2CJ4 A;  3F29 A;  3EOM A;  1K93 A;  2PO4 A;  1QDB A;  1Y0V A;  2VF1 A;  2BU5 A;  1K8T A;  1Y8N A;  5K3I A;  4ZXV A;  2AO2 A;  2ZO5 A;  2OT4 A;  3TTB A;  3X29 A;  3Q23 A;  3U33 A;  4G5E A;  3BNJ A;  2R02 A;  1X91 A;  3C3L A;  3L1T A;  5B5V A;  3SCE A;  1SC5 A;  4MPC A;  2GBB A;  2E81 A;  2OEX A;  3TZ5 A;  2CX9 A;  2FON A;  2R03 A;  3NF4 A;  4LQQ B;  3CRL A;  4MP7 A;  3AFF A;  3SXQ A;  3Q24 A;  2Z1Q A;  2YYL A;  3SWO A;  2DDH A;  5K3H A;  1UKW A;  2FP1 A;  2JIF A;  2R0M A;  3X0X A;  3Q0A A;  2YYK A;  3DJL A;  2UXW A;  3KML A;  3GNC A;  4V25 A;  1WS9 A;  5GJV E;  2F6L A;  2EC5 A;  1K90 A;  3R7K A;  2XS8 A;  4P13 A;  4G97 A;  3HWC A;  3C46 A;  5K3J A;  1BUC A;  2BU6 A;  3GM6 A;  3VKG A;  2JBT A;  4H85 A;  4HR3 A;  4H7Q A;  5M4M A;  3FCJ A;  3GQT A;  1GKX A;  1XG2 B;  4DOY A;  2C12 A;  3P4T A;  2RF7 A;  2BTZ A;  2RFQ A;  2ZAF A;  2A1T A;  3MPJ A;  2E80 A;  3MPI A;  1FS9 A;  1IVH A;  4AI6 A;  5GJW E;  2HJN A;  4JEK A;  1SIR A;  5J6A A;  4MP2 A;  3II9 A;  3BNF A;  4Q1O A;  5M4N A;  1PI1 A;  3D1I A;  1LVC A;  1RJ1 A;  1XFX A;  1S26 A;  1Y8O A;  2E0A A;  4XVX A;  4FZ4 A;  2XS1 A;  4L3Z A;  1EGD A;  1EGC A;  4ZYJ A;  2Q8H A;  4E00 A;  1JQI A;  3BNH A;  4U83 A;  3TOR A;  3VAD A;  4Q0T A;  2EBA A;  3BNG A; 
#chains in the Genus database with same CATH homology
 1FS8 A;  3LG1 A;  3D9G A;  2IX6 A;  1GU6 A;  4Q5C A;  3RKH A;  1OAH A;  4L38 A;  2YYM A;  1IS2 A;  4X28 C;  3OWM A;  5K3G A;  2C0U A;  4L1F A;  3S7W A;  2VR0 A;  2OR0 A;  4KTO A;  4KCF A;  2JBS A;  3UU9 A;  3PFD A;  4L3X A;  2PG0 A;  2WBI A;  2YYJ A;  2YYG A;  3OWA A;  3MMO A;  1SIQ A;  2D29 A;  4O5M A;  2JBR A;  3FO3 A;  1UDY A;  4X28 A;  4IRN A;  2VIG A;  3D9D A;  2REH A;  4NXL A;  1T9G A;  4WJY A;  2R0N A;  4L3Y A;  1EGE A;  3UBR A;  4IV6 A;  4OO2 A;  1R2J A;  4Q17 A;  4RM7 A;  3MKH A;  1FS7 A;  1U8V A;  3B96 A;  4W9U A;  1RX0 A;  4Q5B A;  3MDD A;  3D9F A;  2IX5 A;  4Q4U A;  3D6B A;  3EON A;  2DVL A;  4N5F A;  3MDE A;  4M9A A;  3SF6 A;  2YYI A;  2J7A A;  3M9V A;  3MXL A;  3X0Y A;  3D9E A;  3AFE A;  3LGQ A;  3OIB A;  2RDZ A;  1W07 A;  3F29 A;  3EOM A;  1QDB A;  2OT4 A;  5K3I A;  4ZXV A;  2ZO5 A;  3TTB A;  4G5E A;  3BNJ A;  3L1T A;  3SCE A;  2E81 A;  2CX9 A;  2FON A;  3NF4 A;  3AFF A;  3SXQ A;  2Z1Q A;  2YYL A;  3SWO A;  2DDH A;  5K3H A;  1UKW A;  2JIF A;  2R0M A;  3X0X A;  2YYK A;  2UXW A;  3GNC A;  1WS9 A;  3R7K A;  4P13 A;  3HWC A;  5K3J A;  1BUC A;  3GM6 A;  2JBT A;  4HR3 A;  3FCJ A;  3GQT A;  4DOY A;  2C12 A;  3P4T A;  2RF7 A;  2RFQ A;  2ZAF A;  2A1T A;  3MPJ A;  2E80 A;  3MPI A;  1FS9 A;  1IVH A;  4JEK A;  1SIR A;  4Q1O A;  3II9 A;  3BNF A;  3D1I A;  4XVX A;  4L3Z A;  1EGD A;  1EGC A;  4ZYJ A;  1JQI A;  3BNH A;  4U83 A;  3TOR A;  4Q0T A;  2EBA A;  3BNG A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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