3D9EA

Nitroalkane oxidase: active site mutant d402n crystallized with 1-nitrooctane
Total Genus 158
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
158
sequence length
431
structure length
431
Chain Sequence
VDFKLSPSQLEARRHAQAFANTVLTKASAEYSTQKDQLSRFQATRPFYREAVRHGLIKAQVPIPLGGTMESLVHESIILEELFAVEPATSITIVATALGLMPVILCDSPSLQEKFLKPFISGEGEPLASLMHSEPNGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNSGGWDYKGADLACVVCRVSDDPSKPQDPNVDPATQIAVLLVTRETIANNKKDAYQILGEPELAGHITTSGPHTRFTEFHVPHENLLCTPGLKAQGLVETAFAMSAALVGAMAIGTARAAFEEALVFAKSDTRGGSKHIIEHQSVADKLIDCKIRLETSRLLVWKAVTTLEDEALEWKVKLEMAMQTKIYTTDVAVECVIDAMKAVGMKSYAKDMSFPRLLNEVMCYPLFNGGNIGLRRRQMQRVMALEDYEPWAATYGSS
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Oxidoreductase
molecule keywords Nitroalkane oxidase
publication title Crystal structures of intermediates in the nitroalkane oxidase reaction.
pubmed doi rcsb
source organism Fusarium oxysporum
total genus 158
structure length 431
sequence length 431
chains with identical sequence B, C, D
ec nomenclature ec 1.7.3.1: Nitroalkane oxidase.
pdb deposition date 2008-05-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00441 Acyl-CoA_dh_1 Acyl-CoA dehydrogenase, C-terminal domain
A PF02771 Acyl-CoA_dh_N Acyl-CoA dehydrogenase, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.540.10 Mainly Alpha Orthogonal Bundle Butyryl-Coa Dehydrogenase, subunit A; domain 1 Acyl-CoA dehydrogenase/oxidase, N-terminal domain 3d9eA01
1.20.140.10 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A; domain 3 Butyryl-CoA Dehydrogenase, subunit A, domain 3 3d9eA03
2.40.110.10 Mainly Beta Beta Barrel Butyryl-CoA Dehydrogenase, subunit A; domain 2 Butyryl-CoA Dehydrogenase, subunit A, domain 2 3d9eA02
5K3HA 3D9FA 4Q17A 1EGCA 2OT4A 2VIGA 3SXQA 3UU9A 1GU6A 3SF6A 3BNFA 3BNHA 2E81A 3D6BA 1UKWA 4L1FA 2RFQA 2YYKA 3LGQA 2JBRA 2EBAA 3SWOA 1BUCA 4NXLA 4L3YA 4W9UA 3II9A 4RM7A 3R7KA 2RF7A 2YYLA 4Q1OA 1IS2A 4Q5CA 3GQTA 2YYJA 4Q5BA 3P4TA 3GM6A 3MPIA 3AFEA 2ZO5A 2CX9A 1FS9A 4O5MA 4P13A 2RDZA 1RX0A 3X0YA 4L38A 4X28A 1QDBA 3OWAA 2D29A 2C0UA 2R0MA 3D9GA 1R2JA 1T9GA 2JBTA 2VR0A 2YYIA 2DDHA 4U83A 4DOYA 5K3GA 1EGDA 3AFFA 3UBRA 4Q4UA 1W07A 3TTBA 4X28C 4L3XA 2JIFA 3OWMA 4G5EA 2ZAFA 3BNJA 3GNCA 4KTOA 1JQIA 1EGEA 1FS8A 1U8VA 3LG1A 3D9DA 3NF4A 4IRNA 4JEKA 1SIQA 2IX6A 2YYMA 3X0XA 2PG0A 2IX5A 4KCFA 3MXLA 2C12A 2UXWA 2YYGA 3OIBA 1UDYA 2DVLA 4OO2A 3MDDA 3PFDA 3D1IA 5K3JA 3SCEA 3MMOA 2FONA 2R0NA 1IVHA 2REHA 4IV6A 5K3IA 3BNGA 4L3ZA 4HR3A 3MDEA 3MPJA 3FCJA 3D9EA 1OAHA 3M9VA 3EOMA 4WJYA 3S7WA 4ZXVA 2JBSA 2A1TA 2J7AA 1WS9A 3B96A 4Q0TA 3EONA 3L1TA 3TORA 3HWCA 2OR0A 1SIRA 4N5FA 2WBIA 4M9AA 4ZYJA 2E80A 3RKHA 3FO3A 3MKHA 4XVXA 2Z1QA 3F29A 1FS7A
chains in the Genus database with same CATH superfamily
5K3HA 1S26A 2CJ5A 3D9FA 4Q17A 2EBFX 2CJ6A 1EGCA 2Q8IA 2OT4A 3TZ2A 2VIGA 2BTZA 3SXQA 3U33A 3UU9A 1GU6A 3Q0AA 3SF6A 1XFUA 2PO4A 3BNFA 3BNHA 1K90A 4H7QA 4DZYA 2E81A 3D6BA 2YGWA 1UKWA 4L1FA 1XFXA 2RFQA 5BRMA 1Y8NA 2LFWA 2YYKA 3Q23A 3LGQA 2JBRA 2EBAA 2CJ7A 1RJ1A 3KMLA 2OJQA 4MP2A 3SWOA 1BUCA 4NXLA 5J71A 4L3YA 2OEVA 4W9UA 2EC5A 5B6BA 3II9A 4RM7A 1PK0A 1XFZA 3R7KA 2AZEA 2RF7A 2GBBA 2YYLA 3VADA 1XFVA 4Q1OA 1IS2A 4E00A 2EBHX 4Q5CA 3GQTA 2YYJA 4Q5BA 2R03A 2QR4A 3P4TA 1X8ZA 4J1VA 3GM6A 1GJVA 3MPIA 4AKGA 3AFEA 2ZO5A 1K93A 2CX9A 5J6AA 1FS9A 4O5MA 2FP1A 4P13A 2RDZA 1RX0A 3X0YA 3CRKA 2BU2A 3N0RA 2BU8A 4JIOA 4L38A 4X28A 1QDBA 3OWAA 1K8TA 2D29A 2C0UA 2R0MA 4AKIA 2XS8A 2XS1A 3D9GA 4FF2A 1XFYA 1R2JA 1T9GA 2JBTA 2FP2A 2ZKJA 2VR0A 1GKZA 2YYIA 2DDHA 4U83A 2AO2A 2CJ4A 4DOYA 5K3GA 1LVCA 1EGDA 3AFFA 1Y8PA 3UBRA 4HKSA 4Q4UA 1XFWA 1W07A 1SK6A 3TTBA 2ZDXA 4LQSB 2R02A 2Q8HA 4X28C 4L3XA 5GJWE 2JIFA 3VKGA 3OWMA 4G5EA 2ZAFA 3BNJA 3TZ5A 3GNCA 4KTOA 1JQIA 3D2RA 1Y8OA 1EGEA 1FS8A 1U8VA 4KS9A 3LG1A 3D9DA 3NF4A 4IRNA 4JEKA 3CE2A 1RJ4A 2HJNA 4AI6A 4F0XA 1SIQA 2IX6A 2YYMA 2BU5A 3X0XA 2PG0A 2R05A 2IX5A 4KCFA 5BRKA 3MXLA 2C12A 2UXWA 1PI1A 2YYGA 4KSFA 4KSAA 3OIBA 5B5VA 1UDYA 2OEXA 5M4MA 1SC5A 1XG2B 5M4NA 2Q8GA 2DVLA 4OO2A 3MDDA 4AKHA 3PFDA 2E0AA 4FF4A 3D1IA 5K3JA 5M4KA 3SCEA 4FF3A 4P79A 1X90A 4JIZA 3MMOA 3VKHA 2FONA 3C2PA 2R0NA 1IVHA 2REHA 4MPCA 4IV6A 5K3IA 3BNGA 4E01A 4L3ZA 4HR3A 3MDEA 3MPJA 4FZ4A 2PNRA 4H85A 4V25A 4E02A 3CRLA 4H81A 3FCJA 2VF1A 4G97A 5B5WA 3DJLA 3D9EA 5EZ3A 4V26A 2CJ8A 1R3BA 1OAHA 3M9VA 3EOMA 1GKXA 4WJYA 4LQQB 3S7WA 4ZXVA 4MPNA 2JBSA 2A1TA 2J7AA 1WS9A 3B96A 1Y0VA 2BU6A 4Q0TA 4QICA 3C46A 3EONA 3L1TA 3Q22A 3TZ4A 3TORA 1X91A 3HWCA 3Q24A 1RP3A 2OR0A 2XQRB 1JM6A 3TZ0A 4FF1A 1SIRA 4N5FA 2WBIA 4M9AA 5GJVE 2BU7A 4HKRA 4MP7A 4ZYJA 2E80A 2F6LA 3FO3A 2Q8FA 3RKHA 2ZDYA 3X29A 3MKHA 3C3LA 4XVXA 4MPEA 2Z1QA 3F29A 1FS7A 5M4PA
chains in the Genus database with same CATH topology
5K3HA 3D9FA 4Q17A 1EGCA 2OT4A 2VIGA 3SXQA 3UU9A 1GU6A 3SF6A 3BNFA 3BNHA 2E81A 3D6BA 1UKWA 4L1FA 2RFQA 2YYKA 3LGQA 2JBRA 2EBAA 3SWOA 1BUCA 4NXLA 4L3YA 4W9UA 3II9A 4RM7A 3R7KA 2RF7A 2YYLA 4Q1OA 1IS2A 4Q5CA 3GQTA 2YYJA 4Q5BA 3P4TA 3GM6A 3MPIA 3AFEA 2ZO5A 2CX9A 1FS9A 4O5MA 4P13A 2RDZA 1RX0A 3X0YA 4L38A 4X28A 1QDBA 3OWAA 2D29A 2C0UA 2R0MA 3D9GA 1R2JA 1T9GA 2JBTA 2VR0A 2YYIA 2DDHA 4U83A 4DOYA 5K3GA 1EGDA 3AFFA 3UBRA 4Q4UA 1W07A 3TTBA 4X28C 4L3XA 2JIFA 3OWMA 4G5EA 2ZAFA 3BNJA 3GNCA 4KTOA 1JQIA 1EGEA 1FS8A 1U8VA 3LG1A 3D9DA 3NF4A 4IRNA 4JEKA 1SIQA 2IX6A 2YYMA 3X0XA 2PG0A 2IX5A 4KCFA 3MXLA 2C12A 2UXWA 2YYGA 3OIBA 1UDYA 2DVLA 4OO2A 3MDDA 3PFDA 3D1IA 5K3JA 3SCEA 3MMOA 2FONA 2R0NA 1IVHA 2REHA 4IV6A 5K3IA 3BNGA 4L3ZA 4HR3A 3MDEA 3MPJA 3FCJA 3D9EA 1OAHA 3M9VA 3EOMA 4WJYA 3S7WA 4ZXVA 2JBSA 2A1TA 2J7AA 1WS9A 3B96A 4Q0TA 3EONA 3L1TA 3TORA 3HWCA 2OR0A 1SIRA 4N5FA 2WBIA 4M9AA 4ZYJA 2E80A 3RKHA 3FO3A 3MKHA 4XVXA 2Z1QA 3F29A 1FS7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5K3H A;  3D9F A;  4Q17 A;  1EGC A;  2OT4 A;  2VIG A;  3SXQ A;  3UU9 A;  1GU6 A;  3SF6 A;  3BNF A;  3BNH A;  2E81 A;  3D6B A;  1UKW A;  4L1F A;  2RFQ A;  2YYK A;  3LGQ A;  2JBR A;  2EBA A;  3SWO A;  1BUC A;  4NXL A;  4L3Y A;  4W9U A;  3II9 A;  4RM7 A;  3R7K A;  2RF7 A;  2YYL A;  4Q1O A;  1IS2 A;  4Q5C A;  3GQT A;  2YYJ A;  4Q5B A;  3P4T A;  3GM6 A;  3MPI A;  3AFE A;  2ZO5 A;  2CX9 A;  1FS9 A;  4O5M A;  4P13 A;  2RDZ A;  1RX0 A;  3X0Y A;  4L38 A;  4X28 A;  1QDB A;  3OWA A;  2D29 A;  2C0U A;  2R0M A;  3D9G A;  1R2J A;  1T9G A;  2JBT A;  2VR0 A;  2YYI A;  2DDH A;  4U83 A;  4DOY A;  5K3G A;  1EGD A;  3AFF A;  3UBR A;  4Q4U A;  1W07 A;  3TTB A;  4X28 C;  4L3X A;  2JIF A;  3OWM A;  4G5E A;  2ZAF A;  3BNJ A;  3GNC A;  4KTO A;  1JQI A;  1EGE A;  1FS8 A;  1U8V A;  3LG1 A;  3D9D A;  3NF4 A;  4IRN A;  4JEK A;  1SIQ A;  2IX6 A;  2YYM A;  3X0X A;  2PG0 A;  2IX5 A;  4KCF A;  3MXL A;  2C12 A;  2UXW A;  2YYG A;  3OIB A;  1UDY A;  2DVL A;  4OO2 A;  3MDD A;  3PFD A;  3D1I A;  5K3J A;  3SCE A;  3MMO A;  2FON A;  2R0N A;  1IVH A;  2REH A;  4IV6 A;  5K3I A;  3BNG A;  4L3Z A;  4HR3 A;  3MDE A;  3MPJ A;  3FCJ A;  3D9E A;  1OAH A;  3M9V A;  3EOM A;  4WJY A;  3S7W A;  4ZXV A;  2JBS A;  2A1T A;  2J7A A;  1WS9 A;  3B96 A;  4Q0T A;  3EON A;  3L1T A;  3TOR A;  3HWC A;  2OR0 A;  1SIR A;  4N5F A;  2WBI A;  4M9A A;  4ZYJ A;  2E80 A;  3RKH A;  3FO3 A;  3MKH A;  4XVX A;  2Z1Q A;  3F29 A;  1FS7 A; 
#chains in the Genus database with same CATH topology
 5K3H A;  1S26 A;  2CJ5 A;  3D9F A;  4Q17 A;  2EBF X;  2CJ6 A;  1EGC A;  2Q8I A;  2OT4 A;  3TZ2 A;  2VIG A;  2BTZ A;  3SXQ A;  3U33 A;  3UU9 A;  1GU6 A;  3Q0A A;  3SF6 A;  1XFU A;  2PO4 A;  3BNF A;  3BNH A;  1K90 A;  4H7Q A;  4DZY A;  2E81 A;  3D6B A;  2YGW A;  1UKW A;  4L1F A;  1XFX A;  2RFQ A;  5BRM A;  1Y8N A;  2LFW A;  2YYK A;  3Q23 A;  3LGQ A;  2JBR A;  2EBA A;  2CJ7 A;  1RJ1 A;  3KML A;  2OJQ A;  4MP2 A;  3SWO A;  1BUC A;  4NXL A;  5J71 A;  4L3Y A;  2OEV A;  4W9U A;  2EC5 A;  5B6B A;  3II9 A;  4RM7 A;  1PK0 A;  1XFZ A;  3R7K A;  2AZE A;  2RF7 A;  2GBB A;  2YYL A;  3VAD A;  1XFV A;  4Q1O A;  1IS2 A;  4E00 A;  2EBH X;  4Q5C A;  3GQT A;  2YYJ A;  4Q5B A;  2R03 A;  2QR4 A;  3P4T A;  1X8Z A;  4J1V A;  3GM6 A;  1GJV A;  3MPI A;  4AKG A;  3AFE A;  2ZO5 A;  1K93 A;  2CX9 A;  5J6A A;  1FS9 A;  4O5M A;  2FP1 A;  4P13 A;  2RDZ A;  1RX0 A;  3X0Y A;  3CRK A;  2BU2 A;  3N0R A;  2BU8 A;  4JIO A;  4L38 A;  4X28 A;  1QDB A;  3OWA A;  1K8T A;  2D29 A;  2C0U A;  2R0M A;  4AKI A;  2XS8 A;  2XS1 A;  3D9G A;  4FF2 A;  1XFY A;  1R2J A;  1T9G A;  2JBT A;  2FP2 A;  2ZKJ A;  2VR0 A;  1GKZ A;  2YYI A;  2DDH A;  4U83 A;  2AO2 A;  2CJ4 A;  4DOY A;  5K3G A;  1LVC A;  1EGD A;  3AFF A;  1Y8P A;  3UBR A;  4HKS A;  4Q4U A;  1XFW A;  1W07 A;  1SK6 A;  3TTB A;  2ZDX A;  4LQS B;  2R02 A;  2Q8H A;  4X28 C;  4L3X A;  5GJW E;  2JIF A;  3VKG A;  3OWM A;  4G5E A;  2ZAF A;  3BNJ A;  3TZ5 A;  3GNC A;  4KTO A;  1JQI A;  3D2R A;  1Y8O A;  1EGE A;  1FS8 A;  1U8V A;  4KS9 A;  3LG1 A;  3D9D A;  3NF4 A;  4IRN A;  4JEK A;  3CE2 A;  1RJ4 A;  2HJN A;  4AI6 A;  4F0X A;  1SIQ A;  2IX6 A;  2YYM A;  2BU5 A;  3X0X A;  2PG0 A;  2R05 A;  2IX5 A;  4KCF A;  5BRK A;  3MXL A;  2C12 A;  2UXW A;  1PI1 A;  2YYG A;  4KSF A;  4KSA A;  3OIB A;  5B5V A;  1UDY A;  2OEX A;  5M4M A;  1SC5 A;  1XG2 B;  5M4N A;  2Q8G A;  2DVL A;  4OO2 A;  3MDD A;  4AKH A;  3PFD A;  2E0A A;  4FF4 A;  3D1I A;  5K3J A;  5M4K A;  3SCE A;  4FF3 A;  4P79 A;  1X90 A;  4JIZ A;  3MMO A;  3VKH A;  2FON A;  3C2P A;  2R0N A;  1IVH A;  2REH A;  4MPC A;  4IV6 A;  5K3I A;  3BNG A;  4E01 A;  4L3Z A;  4HR3 A;  3MDE A;  3MPJ A;  4FZ4 A;  2PNR A;  4H85 A;  4V25 A;  4E02 A;  3CRL A;  4H81 A;  3FCJ A;  2VF1 A;  4G97 A;  5B5W A;  3DJL A;  3D9E A;  5EZ3 A;  4V26 A;  2CJ8 A;  1R3B A;  1OAH A;  3M9V A;  3EOM A;  1GKX A;  4WJY A;  4LQQ B;  3S7W A;  4ZXV A;  4MPN A;  2JBS A;  2A1T A;  2J7A A;  1WS9 A;  3B96 A;  1Y0V A;  2BU6 A;  4Q0T A;  4QIC A;  3C46 A;  3EON A;  3L1T A;  3Q22 A;  3TZ4 A;  3TOR A;  1X91 A;  3HWC A;  3Q24 A;  1RP3 A;  2OR0 A;  2XQR B;  1JM6 A;  3TZ0 A;  4FF1 A;  1SIR A;  4N5F A;  2WBI A;  4M9A A;  5GJV E;  2BU7 A;  4HKR A;  4MP7 A;  4ZYJ A;  2E80 A;  2F6L A;  3FO3 A;  2Q8F A;  3RKH A;  2ZDY A;  3X29 A;  3MKH A;  3C3L A;  4XVX A;  4MPE A;  2Z1Q A;  3F29 A;  1FS7 A;  5M4P A; 
#chains in the Genus database with same CATH homology
 5K3H A;  3D9F A;  4Q17 A;  1EGC A;  2OT4 A;  2VIG A;  3SXQ A;  3UU9 A;  1GU6 A;  3SF6 A;  3BNF A;  3BNH A;  2E81 A;  3D6B A;  1UKW A;  4L1F A;  2RFQ A;  2YYK A;  3LGQ A;  2JBR A;  2EBA A;  3SWO A;  1BUC A;  4NXL A;  4L3Y A;  4W9U A;  3II9 A;  4RM7 A;  3R7K A;  2RF7 A;  2YYL A;  4Q1O A;  1IS2 A;  4Q5C A;  3GQT A;  2YYJ A;  4Q5B A;  3P4T A;  3GM6 A;  3MPI A;  3AFE A;  2ZO5 A;  2CX9 A;  1FS9 A;  4O5M A;  4P13 A;  2RDZ A;  1RX0 A;  3X0Y A;  4L38 A;  4X28 A;  1QDB A;  3OWA A;  2D29 A;  2C0U A;  2R0M A;  3D9G A;  1R2J A;  1T9G A;  2JBT A;  2VR0 A;  2YYI A;  2DDH A;  4U83 A;  4DOY A;  5K3G A;  1EGD A;  3AFF A;  3UBR A;  4Q4U A;  1W07 A;  3TTB A;  4X28 C;  4L3X A;  2JIF A;  3OWM A;  4G5E A;  2ZAF A;  3BNJ A;  3GNC A;  4KTO A;  1JQI A;  1EGE A;  1FS8 A;  1U8V A;  3LG1 A;  3D9D A;  3NF4 A;  4IRN A;  4JEK A;  1SIQ A;  2IX6 A;  2YYM A;  3X0X A;  2PG0 A;  2IX5 A;  4KCF A;  3MXL A;  2C12 A;  2UXW A;  2YYG A;  3OIB A;  1UDY A;  2DVL A;  4OO2 A;  3MDD A;  3PFD A;  3D1I A;  5K3J A;  3SCE A;  3MMO A;  2FON A;  2R0N A;  1IVH A;  2REH A;  4IV6 A;  5K3I A;  3BNG A;  4L3Z A;  4HR3 A;  3MDE A;  3MPJ A;  3FCJ A;  3D9E A;  1OAH A;  3M9V A;  3EOM A;  4WJY A;  3S7W A;  4ZXV A;  2JBS A;  2A1T A;  2J7A A;  1WS9 A;  3B96 A;  4Q0T A;  3EON A;  3L1T A;  3TOR A;  3HWC A;  2OR0 A;  1SIR A;  4N5F A;  2WBI A;  4M9A A;  4ZYJ A;  2E80 A;  3RKH A;  3FO3 A;  3MKH A;  4XVX A;  2Z1Q A;  3F29 A;  1FS7 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...