3D9EA

Nitroalkane oxidase: active site mutant d402n crystallized with 1-nitrooctane
Total Genus 158
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
158
sequence length
431
structure length
431
Chain Sequence
VDFKLSPSQLEARRHAQAFANTVLTKASAEYSTQKDQLSRFQATRPFYREAVRHGLIKAQVPIPLGGTMESLVHESIILEELFAVEPATSITIVATALGLMPVILCDSPSLQEKFLKPFISGEGEPLASLMHSEPNGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNSGGWDYKGADLACVVCRVSDDPSKPQDPNVDPATQIAVLLVTRETIANNKKDAYQILGEPELAGHITTSGPHTRFTEFHVPHENLLCTPGLKAQGLVETAFAMSAALVGAMAIGTARAAFEEALVFAKSDTRGGSKHIIEHQSVADKLIDCKIRLETSRLLVWKAVTTLEDEALEWKVKLEMAMQTKIYTTDVAVECVIDAMKAVGMKSYAKDMSFPRLLNEVMCYPLFNGGNIGLRRRQMQRVMALEDYEPWAATYGSS
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Nitroalkane oxidase
publication title Crystal structures of intermediates in the nitroalkane oxidase reaction.
pubmed doi rcsb
source organism Fusarium oxysporum
molecule tags Oxidoreductase
total genus 158
structure length 431
sequence length 431
chains with identical sequence B, C, D
ec nomenclature ec 1.7.3.1: Nitroalkane oxidase.
pdb deposition date 2008-05-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00441 Acyl-CoA_dh_1 Acyl-CoA dehydrogenase, C-terminal domain
A PF02771 Acyl-CoA_dh_N Acyl-CoA dehydrogenase, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.540.10 Mainly Alpha Orthogonal Bundle Butyryl-Coa Dehydrogenase, subunit A; domain 1 Acyl-CoA dehydrogenase/oxidase, N-terminal domain 3d9eA01
1.20.140.10 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A; domain 3 Butyryl-CoA Dehydrogenase, subunit A, domain 3 3d9eA03
2.40.110.10 Mainly Beta Beta Barrel Butyryl-CoA Dehydrogenase, subunit A; domain 2 Butyryl-CoA Dehydrogenase, subunit A, domain 2 3d9eA02
2Z1QA 3OWAA 3FO3A 4G5EA 3MDEA 1EGCA 4Q4UA 4DOYA 4X28C 3MMOA 4HR3A 2IX5A 2JIFA 1SIQA 2JBSA 2YYIA 3LG1A 3OIBA 3MPIA 4L3ZA 5K3GA 2YYGA 3P4TA 2C12A 3SWOA 2YYMA 2IX6A 3EOMA 1W07A 1FS8A 1QDBA 4OO2A 2VR0A 3NF4A 2JBTA 4KCFA 2UXWA 4P13A 3MPJA 4L38A 2E81A 1UKWA 1IVHA 3II9A 1JQIA 3GQTA 1RX0A 2WBIA 1GU6A 1WS9A 3BNJA 4N5FA 3D9DA 2D29A 2YYKA 4IRNA 2A1TA 3L1TA 1EGDA 3X0XA 5K3HA 4ZXVA 1FS9A 4ZYJA 1EGEA 5K3JA 4O5MA 3PFDA 2DVLA 2CX9A 5K3IA 4Q0TA 4JEKA 3RKHA 3OWMA 2EBAA 4Q17A 1T9GA 2PG0A 3S7WA 4WJYA 3UBRA 2REHA 2VIGA 3MDDA 2J7AA 3BNGA 3LGQA 3B96A 4KTOA 4W9UA 1U8VA 3GNCA 2JBRA 3MXLA 4RM7A 3TTBA 4M9AA 2YYLA 2DDHA 2E80A 2FONA 1UDYA 1R2JA 3BNFA 2R0MA 2OR0A 3SF6A 4L3XA 3MKHA 3D9GA 3FCJA 4NXLA 3D9EA 3M9VA 3R7KA 3EONA 4Q5CA 1IS2A 2R0NA 3X0YA 3AFFA 3UU9A 4L3YA 2C0UA 1OAHA 3D9FA 2RF7A 3SCEA 1SIRA 4L1FA 4Q1OA 3BNHA 3SXQA 1BUCA 4IV6A 4X28A 3D6BA 2ZO5A 2RDZA 2RFQA 1FS7A 2OT4A 4Q5BA 3GM6A 3D1IA 4U83A 2ZAFA 3F29A 3HWCA 4XVXA 2YYJA 3AFEA 3TORA
chains in the Genus database with same CATH superfamily
2Z1QA 1JM6A 3OWAA 3CRLA 3FO3A 4G5EA 4V26A 2LFWA 3VADA 2AZEA 1Y0VA 3MDEA 1XFUA 1EGCA 1XFWA 4Q4UA 3C2PA 4DOYA 5M4NA 4X28C 3MMOA 4HR3A 1XFYA 2IX5A 4G97A 4HKSA 4JIZA 2Q8HA 2JIFA 4FZ4A 4QICA 1SIQA 2JBSA 1RJ4A 4H81A 2YYIA 3LG1A 3OIBA 2BU2A 2VF1A 3CRKA 4AKGA 3MPIA 4L3ZA 1PI1A 1GJVA 5K3GA 2YYGA 4MP2A 3U33A 3P4TA 2C12A 3SWOA 2CJ7A 2BU6A 2IX6A 3EOMA 1W07A 1PK0A 1XFVA 1Y8PA 2QR4A 2R05A 4KS9A 3TZ4A 3VKGA 3KMLA 4FF4A 3C46A 1FS8A 2CJ6A 2BTZA 4KSFA 1QDBA 1Y8NA 2BU5A 1X90A 4OO2A 1K93A 2VR0A 1GKXA 2R03A 3C3LA 3NF4A 2JBTA 1XFZA 3X29A 2ZDXA 4KCFA 2UXWA 4P13A 4FF3A 4AI6A 4V25A 3MPJA 5BRKA 4L38A 2E81A 2ZDYA 1UKWA 1IVHA 1S26A 5M4MA 3II9A 4E02A 2HJNA 2PO4A 2CJ4A 4E01A 1JQIA 3GQTA 1RX0A 2WBIA 1GU6A 1WS9A 3DJLA 3BNJA 4N5FA 3D9DA 2D29A 1Y8OA 4IRNA 2YYKA 2Q8IA 1K8TA 4MPCA 2A1TA 2GBBA 3L1TA 1EGDA 1LVCA 3X0XA 3Q22A 3Q0AA 5K3HA 4ZXVA 2E0AA 1FS9A 4ZYJA 4KSAA 3TZ0A 1EGEA 5EZ3A 5K3JA 4O5MA 3PFDA 2DVLA 3Q24A 1RJ1A 2CJ5A 2CX9A 5K3IA 4Q0TA 5B6BA 3Q23A 4FF1A 4JEKA 1R3BA 3OWMA 5B5VA 2EBFX 1X91A 3RKHA 4F0XA 2EBAA 4Q17A 4MPEA 3N0RA 1T9GA 2PG0A 2XS1A 3S7WA 4WJYA 3UBRA 2REHA 2VIGA 3MDDA 2J7AA 3BNGA 3LGQA 2FP2A 3B96A 4KTOA 4W9UA 1U8VA 5BRMA 1XFXA 3GNCA 1SK6A 2JBRA 3MXLA 2YGWA 2BU8A 4RM7A 3TTBA 4AKIA 4M9AA 1GKZA 2YYLA 2DDHA 1SC5A 2E80A 3D2RA 4H85A 2FONA 1UDYA 1R2JA 2XS8A 3BNFA 2R0MA 2OR0A 3SF6A 4L3XA 3MKHA 5M4KA 2EC5A 4MP7A 3D9GA 3FCJA 4NXLA 3D9EA 3M9VA 3R7KA 3EONA 2AO2A 1IS2A 2R0NA 3X0YA 2YYMA 2FP1A 2ZKJA 1RP3A 2OEXA 2R02A 4E00A 4FF2A 3AFFA 3UU9A 1X8ZA 2CJ8A 4L3YA 4LQSB 2C0UA 4LQQB 1OAHA 3D9FA 4AKHA 2RF7A 3SCEA 1SIRA 4HKRA 2F6LA 4L1FA 2XQRB 4JIOA 4Q1OA 1XG2B 4J1VA 2OJQA 3BNHA 3SXQA 1BUCA 4IV6A 4X28A 3VKHA 3D6BA 2ZO5A 2RDZA 4Q5CA 3CE2A 5B5WA 4H7QA 2RFQA 5GJVE 2OEVA 5M4PA 1FS7A 2EBHX 2OT4A 2Q8GA 3TZ5A 2BU7A 4MPNA 4Q5BA 3GM6A 4P79A 5GJWE 2PNRA 3D1IA 4U83A 4DZYA 5J6AA 2ZAFA 3F29A 3HWCA 5J71A 2Q8FA 3TZ2A 4XVXA 2YYJA 3AFEA 1K90A 3TORA
chains in the Genus database with same CATH topology
2Z1QA 3OWAA 3FO3A 4G5EA 3MDEA 1EGCA 4Q4UA 4DOYA 4X28C 3MMOA 4HR3A 2IX5A 2JIFA 1SIQA 2JBSA 2YYIA 3LG1A 3OIBA 3MPIA 4L3ZA 5K3GA 2YYGA 3P4TA 2C12A 3SWOA 2YYMA 2IX6A 3EOMA 1W07A 1FS8A 1QDBA 4OO2A 2VR0A 3NF4A 2JBTA 4KCFA 2UXWA 4P13A 3MPJA 4L38A 2E81A 1UKWA 1IVHA 3II9A 1JQIA 3GQTA 1RX0A 2WBIA 1GU6A 1WS9A 3BNJA 4N5FA 3D9DA 2D29A 2YYKA 4IRNA 2A1TA 3L1TA 1EGDA 3X0XA 5K3HA 4ZXVA 1FS9A 4ZYJA 1EGEA 5K3JA 4O5MA 3PFDA 2DVLA 2CX9A 5K3IA 4Q0TA 4JEKA 3RKHA 3OWMA 2EBAA 4Q17A 1T9GA 2PG0A 3S7WA 4WJYA 3UBRA 2REHA 2VIGA 3MDDA 2J7AA 3BNGA 3LGQA 3B96A 4KTOA 4W9UA 1U8VA 3GNCA 2JBRA 3MXLA 4RM7A 3TTBA 4M9AA 2YYLA 2DDHA 2E80A 2FONA 1UDYA 1R2JA 3BNFA 2R0MA 2OR0A 3SF6A 4L3XA 3MKHA 3D9GA 3FCJA 4NXLA 3D9EA 3M9VA 3R7KA 3EONA 4Q5CA 1IS2A 2R0NA 3X0YA 3AFFA 3UU9A 4L3YA 2C0UA 1OAHA 3D9FA 2RF7A 3SCEA 1SIRA 4L1FA 4Q1OA 3BNHA 3SXQA 1BUCA 4IV6A 4X28A 3D6BA 2ZO5A 2RDZA 2RFQA 1FS7A 2OT4A 4Q5BA 3GM6A 3D1IA 4U83A 2ZAFA 3F29A 3HWCA 4XVXA 2YYJA 3AFEA 3TORA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2Z1Q A;  3OWA A;  3FO3 A;  4G5E A;  3MDE A;  1EGC A;  4Q4U A;  4DOY A;  4X28 C;  3MMO A;  4HR3 A;  2IX5 A;  2JIF A;  1SIQ A;  2JBS A;  2YYI A;  3LG1 A;  3OIB A;  3MPI A;  4L3Z A;  5K3G A;  2YYG A;  3P4T A;  2C12 A;  3SWO A;  2YYM A;  2IX6 A;  3EOM A;  1W07 A;  1FS8 A;  1QDB A;  4OO2 A;  2VR0 A;  3NF4 A;  2JBT A;  4KCF A;  2UXW A;  4P13 A;  3MPJ A;  4L38 A;  2E81 A;  1UKW A;  1IVH A;  3II9 A;  1JQI A;  3GQT A;  1RX0 A;  2WBI A;  1GU6 A;  1WS9 A;  3BNJ A;  4N5F A;  3D9D A;  2D29 A;  2YYK A;  4IRN A;  2A1T A;  3L1T A;  1EGD A;  3X0X A;  5K3H A;  4ZXV A;  1FS9 A;  4ZYJ A;  1EGE A;  5K3J A;  4O5M A;  3PFD A;  2DVL A;  2CX9 A;  5K3I A;  4Q0T A;  4JEK A;  3RKH A;  3OWM A;  2EBA A;  4Q17 A;  1T9G A;  2PG0 A;  3S7W A;  4WJY A;  3UBR A;  2REH A;  2VIG A;  3MDD A;  2J7A A;  3BNG A;  3LGQ A;  3B96 A;  4KTO A;  4W9U A;  1U8V A;  3GNC A;  2JBR A;  3MXL A;  4RM7 A;  3TTB A;  4M9A A;  2YYL A;  2DDH A;  2E80 A;  2FON A;  1UDY A;  1R2J A;  3BNF A;  2R0M A;  2OR0 A;  3SF6 A;  4L3X A;  3MKH A;  3D9G A;  3FCJ A;  4NXL A;  3D9E A;  3M9V A;  3R7K A;  3EON A;  4Q5C A;  1IS2 A;  2R0N A;  3X0Y A;  3AFF A;  3UU9 A;  4L3Y A;  2C0U A;  1OAH A;  3D9F A;  2RF7 A;  3SCE A;  1SIR A;  4L1F A;  4Q1O A;  3BNH A;  3SXQ A;  1BUC A;  4IV6 A;  4X28 A;  3D6B A;  2ZO5 A;  2RDZ A;  2RFQ A;  1FS7 A;  2OT4 A;  4Q5B A;  3GM6 A;  3D1I A;  4U83 A;  2ZAF A;  3F29 A;  3HWC A;  4XVX A;  2YYJ A;  3AFE A;  3TOR A; 
#chains in the Genus database with same CATH topology
 2Z1Q A;  1JM6 A;  3OWA A;  3CRL A;  3FO3 A;  4G5E A;  4V26 A;  2LFW A;  3VAD A;  2AZE A;  1Y0V A;  3MDE A;  1XFU A;  1EGC A;  1XFW A;  4Q4U A;  3C2P A;  4DOY A;  5M4N A;  4X28 C;  3MMO A;  4HR3 A;  1XFY A;  2IX5 A;  4G97 A;  4HKS A;  4JIZ A;  2Q8H A;  2JIF A;  4FZ4 A;  4QIC A;  1SIQ A;  2JBS A;  1RJ4 A;  4H81 A;  2YYI A;  3LG1 A;  3OIB A;  2BU2 A;  2VF1 A;  3CRK A;  4AKG A;  3MPI A;  4L3Z A;  1PI1 A;  1GJV A;  5K3G A;  2YYG A;  4MP2 A;  3U33 A;  3P4T A;  2C12 A;  3SWO A;  2CJ7 A;  2BU6 A;  2IX6 A;  3EOM A;  1W07 A;  1PK0 A;  1XFV A;  1Y8P A;  2QR4 A;  2R05 A;  4KS9 A;  3TZ4 A;  3VKG A;  3KML A;  4FF4 A;  3C46 A;  1FS8 A;  2CJ6 A;  2BTZ A;  4KSF A;  1QDB A;  1Y8N A;  2BU5 A;  1X90 A;  4OO2 A;  1K93 A;  2VR0 A;  1GKX A;  2R03 A;  3C3L A;  3NF4 A;  2JBT A;  1XFZ A;  3X29 A;  2ZDX A;  4KCF A;  2UXW A;  4P13 A;  4FF3 A;  4AI6 A;  4V25 A;  3MPJ A;  5BRK A;  4L38 A;  2E81 A;  2ZDY A;  1UKW A;  1IVH A;  1S26 A;  5M4M A;  3II9 A;  4E02 A;  2HJN A;  2PO4 A;  2CJ4 A;  4E01 A;  1JQI A;  3GQT A;  1RX0 A;  2WBI A;  1GU6 A;  1WS9 A;  3DJL A;  3BNJ A;  4N5F A;  3D9D A;  2D29 A;  1Y8O A;  4IRN A;  2YYK A;  2Q8I A;  1K8T A;  4MPC A;  2A1T A;  2GBB A;  3L1T A;  1EGD A;  1LVC A;  3X0X A;  3Q22 A;  3Q0A A;  5K3H A;  4ZXV A;  2E0A A;  1FS9 A;  4ZYJ A;  4KSA A;  3TZ0 A;  1EGE A;  5EZ3 A;  5K3J A;  4O5M A;  3PFD A;  2DVL A;  3Q24 A;  1RJ1 A;  2CJ5 A;  2CX9 A;  5K3I A;  4Q0T A;  5B6B A;  3Q23 A;  4FF1 A;  4JEK A;  1R3B A;  3OWM A;  5B5V A;  2EBF X;  1X91 A;  3RKH A;  4F0X A;  2EBA A;  4Q17 A;  4MPE A;  3N0R A;  1T9G A;  2PG0 A;  2XS1 A;  3S7W A;  4WJY A;  3UBR A;  2REH A;  2VIG A;  3MDD A;  2J7A A;  3BNG A;  3LGQ A;  2FP2 A;  3B96 A;  4KTO A;  4W9U A;  1U8V A;  5BRM A;  1XFX A;  3GNC A;  1SK6 A;  2JBR A;  3MXL A;  2YGW A;  2BU8 A;  4RM7 A;  3TTB A;  4AKI A;  4M9A A;  1GKZ A;  2YYL A;  2DDH A;  1SC5 A;  2E80 A;  3D2R A;  4H85 A;  2FON A;  1UDY A;  1R2J A;  2XS8 A;  3BNF A;  2R0M A;  2OR0 A;  3SF6 A;  4L3X A;  3MKH A;  5M4K A;  2EC5 A;  4MP7 A;  3D9G A;  3FCJ A;  4NXL A;  3D9E A;  3M9V A;  3R7K A;  3EON A;  2AO2 A;  1IS2 A;  2R0N A;  3X0Y A;  2YYM A;  2FP1 A;  2ZKJ A;  1RP3 A;  2OEX A;  2R02 A;  4E00 A;  4FF2 A;  3AFF A;  3UU9 A;  1X8Z A;  2CJ8 A;  4L3Y A;  4LQS B;  2C0U A;  4LQQ B;  1OAH A;  3D9F A;  4AKH A;  2RF7 A;  3SCE A;  1SIR A;  4HKR A;  2F6L A;  4L1F A;  2XQR B;  4JIO A;  4Q1O A;  1XG2 B;  4J1V A;  2OJQ A;  3BNH A;  3SXQ A;  1BUC A;  4IV6 A;  4X28 A;  3VKH A;  3D6B A;  2ZO5 A;  2RDZ A;  4Q5C A;  3CE2 A;  5B5W A;  4H7Q A;  2RFQ A;  5GJV E;  2OEV A;  5M4P A;  1FS7 A;  2EBH X;  2OT4 A;  2Q8G A;  3TZ5 A;  2BU7 A;  4MPN A;  4Q5B A;  3GM6 A;  4P79 A;  5GJW E;  2PNR A;  3D1I A;  4U83 A;  4DZY A;  5J6A A;  2ZAF A;  3F29 A;  3HWC A;  5J71 A;  2Q8F A;  3TZ2 A;  4XVX A;  2YYJ A;  3AFE A;  1K90 A;  3TOR A; 
#chains in the Genus database with same CATH homology
 2Z1Q A;  3OWA A;  3FO3 A;  4G5E A;  3MDE A;  1EGC A;  4Q4U A;  4DOY A;  4X28 C;  3MMO A;  4HR3 A;  2IX5 A;  2JIF A;  1SIQ A;  2JBS A;  2YYI A;  3LG1 A;  3OIB A;  3MPI A;  4L3Z A;  5K3G A;  2YYG A;  3P4T A;  2C12 A;  3SWO A;  2YYM A;  2IX6 A;  3EOM A;  1W07 A;  1FS8 A;  1QDB A;  4OO2 A;  2VR0 A;  3NF4 A;  2JBT A;  4KCF A;  2UXW A;  4P13 A;  3MPJ A;  4L38 A;  2E81 A;  1UKW A;  1IVH A;  3II9 A;  1JQI A;  3GQT A;  1RX0 A;  2WBI A;  1GU6 A;  1WS9 A;  3BNJ A;  4N5F A;  3D9D A;  2D29 A;  2YYK A;  4IRN A;  2A1T A;  3L1T A;  1EGD A;  3X0X A;  5K3H A;  4ZXV A;  1FS9 A;  4ZYJ A;  1EGE A;  5K3J A;  4O5M A;  3PFD A;  2DVL A;  2CX9 A;  5K3I A;  4Q0T A;  4JEK A;  3RKH A;  3OWM A;  2EBA A;  4Q17 A;  1T9G A;  2PG0 A;  3S7W A;  4WJY A;  3UBR A;  2REH A;  2VIG A;  3MDD A;  2J7A A;  3BNG A;  3LGQ A;  3B96 A;  4KTO A;  4W9U A;  1U8V A;  3GNC A;  2JBR A;  3MXL A;  4RM7 A;  3TTB A;  4M9A A;  2YYL A;  2DDH A;  2E80 A;  2FON A;  1UDY A;  1R2J A;  3BNF A;  2R0M A;  2OR0 A;  3SF6 A;  4L3X A;  3MKH A;  3D9G A;  3FCJ A;  4NXL A;  3D9E A;  3M9V A;  3R7K A;  3EON A;  4Q5C A;  1IS2 A;  2R0N A;  3X0Y A;  3AFF A;  3UU9 A;  4L3Y A;  2C0U A;  1OAH A;  3D9F A;  2RF7 A;  3SCE A;  1SIR A;  4L1F A;  4Q1O A;  3BNH A;  3SXQ A;  1BUC A;  4IV6 A;  4X28 A;  3D6B A;  2ZO5 A;  2RDZ A;  2RFQ A;  1FS7 A;  2OT4 A;  4Q5B A;  3GM6 A;  3D1I A;  4U83 A;  2ZAF A;  3F29 A;  3HWC A;  4XVX A;  2YYJ A;  3AFE A;  3TOR A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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