3D9EA

Nitroalkane oxidase: active site mutant d402n crystallized with 1-nitrooctane
Total Genus 158
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
158
sequence length
431
structure length
431
Chain Sequence
VDFKLSPSQLEARRHAQAFANTVLTKASAEYSTQKDQLSRFQATRPFYREAVRHGLIKAQVPIPLGGTMESLVHESIILEELFAVEPATSITIVATALGLMPVILCDSPSLQEKFLKPFISGEGEPLASLMHSEPNGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNSGGWDYKGADLACVVCRVSDDPSKPQDPNVDPATQIAVLLVTRETIANNKKDAYQILGEPELAGHITTSGPHTRFTEFHVPHENLLCTPGLKAQGLVETAFAMSAALVGAMAIGTARAAFEEALVFAKSDTRGGSKHIIEHQSVADKLIDCKIRLETSRLLVWKAVTTLEDEALEWKVKLEMAMQTKIYTTDVAVECVIDAMKAVGMKSYAKDMSFPRLLNEVMCYPLFNGGNIGLRRRQMQRVMALEDYEPWAATYGSS
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords Nitroalkane oxidase
publication title Crystal structures of intermediates in the nitroalkane oxidase reaction.
pubmed doi rcsb
source organism Fusarium oxysporum
total genus 158
structure length 431
sequence length 431
chains with identical sequence B, C, D
ec nomenclature ec 1.7.3.1: Nitroalkane oxidase.
pdb deposition date 2008-05-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00441 Acyl-CoA_dh_1 Acyl-CoA dehydrogenase, C-terminal domain
A PF02771 Acyl-CoA_dh_N Acyl-CoA dehydrogenase, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.540.10 Mainly Alpha Orthogonal Bundle Butyryl-Coa Dehydrogenase, subunit A; domain 1 Acyl-CoA dehydrogenase/oxidase, N-terminal domain 3d9eA01
1.20.140.10 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A; domain 3 Butyryl-CoA Dehydrogenase, subunit A, domain 3 3d9eA03
2.40.110.10 Mainly Beta Beta Barrel Butyryl-CoA Dehydrogenase, subunit A; domain 2 Butyryl-CoA Dehydrogenase, subunit A, domain 2 3d9eA02
3EOMA 3BNJA 3SWOA 3BNHA 1FS7A 1SIRA 4OO2A 3D1IA 3D9FA 4XVXA 2UXWA 3SXQA 2C12A 2PG0A 3B96A 3NF4A 4Q17A 1EGEA 3D9GA 1BUCA 2YYGA 2OT4A 3X0XA 4RM7A 2RF7A 2IX5A 3OIBA 5K3GA 4L3YA 4Q0TA 1U8VA 1WS9A 3PFDA 2FONA 3LGQA 5K3JA 3S7WA 2YYLA 2YYKA 3AFFA 3MPIA 3MXLA 2WBIA 4NXLA 4W9UA 2D29A 2R0MA 2CX9A 4X28C 2R0NA 3X0YA 4Q1OA 3GNCA 3D9DA 4L3XA 2EBAA 4L1FA 5K3IA 2E80A 4Q4UA 4IRNA 4L3ZA 3EONA 1QDBA 1EGDA 2A1TA 2JIFA 1SIQA 1W07A 1EGCA 4IV6A 1UKWA 2VR0A 3AFEA 1IVHA 3FCJA 3MPJA 4ZXVA 1FS9A 3RKHA 1T9GA 2RFQA 4WJYA 3II9A 4DOYA 3SCEA 3R7KA 4Q5CA 1IS2A 4P13A 3BNGA 3UBRA 3OWAA 1UDYA 2DDHA 3GQTA 1JQIA 2IX6A 2E81A 2YYIA 2JBRA 2Z1QA 3M9VA 2JBTA 1GU6A 4L38A 4M9AA 3MDEA 2YYJA 2OR0A 1RX0A 3FO3A 3P4TA 5K3HA 3UU9A 2ZO5A 3BNFA 2JBSA 4X28A 3SF6A 2ZAFA 3TTBA 3F29A 2C0UA 3MMOA 3D9EA 3HWCA 3LG1A 4G5EA 3MKHA 2YYMA 2VIGA 4U83A 4ZYJA 3OWMA 4HR3A 1OAHA 2DVLA 2REHA 3L1TA 4O5MA 3TORA 4KTOA 1R2JA 4KCFA 1FS8A 2RDZA 4JEKA 3D6BA 3MDDA 4Q5BA 3GM6A 4N5FA 2J7AA
chains in the Genus database with same CATH superfamily
2XS1A 3EOMA 2AO2A 4HKSA 2VF1A 3BNJA 3SWOA 4AKIA 5GJWE 3BNHA 1FS7A 1Y0VA 4LQQB 2EBHX 1SIRA 3TZ2A 2YGWA 4OO2A 3U33A 3D1IA 3D9FA 2CJ5A 4XVXA 3CRKA 4DZYA 2UXWA 3SXQA 2R02A 5M4PA 2EBFX 3Q0AA 2C12A 2PG0A 1LVCA 2QR4A 1XFZA 3B96A 3C2PA 3NF4A 2GBBA 1EGEA 4Q17A 3D9GA 1BUCA 2BU8A 2YYGA 2OT4A 3X0XA 4RM7A 1K90A 2RF7A 2ZDXA 2IX5A 3OIBA 5K3GA 2BU5A 4L3YA 4Q0TA 1U8VA 2CJ7A 2OEXA 1WS9A 4H7QA 1S26A 3PFDA 2OJQA 4V26A 2FONA 2PNRA 3LGQA 5K3JA 3S7WA 2R03A 2YYLA 2YYKA 3AFFA 3VKGA 3MPIA 3MXLA 2WBIA 4NXLA 1X90A 2XQRB 3D2RA 3X29A 4W9UA 2D29A 1RJ1A 2R0MA 2Q8HA 2CX9A 4X28C 2R0NA 3X0YA 2BU7A 2ZKJA 5EZ3A 5BRKA 1RJ4A 4Q1OA 3GNCA 4KS9A 3D9DA 2OEVA 4LQSB 4MPNA 1X91A 4L3XA 2EBAA 5M4NA 1K8TA 4L1FA 4FF4A 2CJ4A 5K3IA 2E80A 4FZ4A 4KSFA 4Q4UA 4IRNA 4L3ZA 3EONA 4FF2A 1SK6A 1QDBA 4V25A 1EGDA 2A1TA 2JIFA 1RP3A 2Q8GA 4F0XA 3TZ4A 1SIQA 1W07A 2BU6A 3N0RA 3VADA 5M4MA 5B6BA 1EGCA 4IV6A 1UKWA 2VR0A 2ZDYA 4MPEA 3C3LA 3VKHA 3AFEA 2AZEA 1IVHA 3FCJA 3MPJA 4ZXVA 1FS9A 5B5VA 3RKHA 1T9GA 2RFQA 4WJYA 4HKRA 3II9A 4DOYA 3SCEA 3R7KA 4Q5CA 3DJLA 1IS2A 4P13A 1XFVA 3BNGA 1X8ZA 3UBRA 3OWAA 3Q24A 1UDYA 1PK0A 2DDHA 1SC5A 1XG2B 2CJ8A 4MPCA 4J1VA 1JM6A 3GQTA 2FP1A 2LFWA 3CE2A 3TZ0A 1JQIA 2IX6A 3TZ5A 2E81A 2YYIA 4AI6A 5GJVE 2JBRA 2Z1QA 3M9VA 4E00A 2JBTA 1GU6A 1XFXA 2F6LA 4L38A 4M9AA 4P79A 1GKXA 3MDEA 2YYJA 4QICA 2OR0A 1RX0A 4JIZA 3C46A 3KMLA 3FO3A 3P4TA 4G97A 5K3HA 5BRMA 4E02A 3UU9A 2CJ6A 2ZO5A 4AKGA 3BNFA 2JBSA 4JIOA 1GJVA 4AKHA 1GKZA 5J71A 2BTZA 4X28A 1Y8PA 2Q8IA 5J6AA 3SF6A 1PI1A 2ZAFA 3Q22A 3TTBA 4FF3A 3CRLA 1Y8OA 3F29A 2C0UA 3MMOA 1R3BA 3D9EA 2R05A 3HWCA 3LG1A 3Q23A 1Y8NA 3MKHA 2YYMA 2VIGA 4G5EA 5B5WA 4U83A 4ZYJA 3OWMA 2FP2A 1K93A 4HR3A 2PO4A 1OAHA 2DVLA 4FF1A 1XFWA 4E01A 2REHA 4MP2A 2Q8FA 3L1TA 4O5MA 2EC5A 1XFUA 3TORA 4KTOA 1R2JA 4H81A 4KCFA 4KSAA 1FS8A 1XFYA 2RDZA 5M4KA 4JEKA 3D6BA 3MDDA 2XS8A 4H85A 4MP7A 2E0AA 3GM6A 4Q5BA 2HJNA 4N5FA 2J7AA 2BU2A
chains in the Genus database with same CATH topology
3EOMA 3BNJA 3SWOA 3BNHA 1FS7A 1SIRA 4OO2A 3D1IA 3D9FA 4XVXA 2UXWA 3SXQA 2C12A 2PG0A 3B96A 3NF4A 4Q17A 1EGEA 3D9GA 1BUCA 2YYGA 2OT4A 3X0XA 4RM7A 2RF7A 2IX5A 3OIBA 5K3GA 4L3YA 4Q0TA 1U8VA 1WS9A 3PFDA 2FONA 3LGQA 5K3JA 3S7WA 2YYLA 2YYKA 3AFFA 3MPIA 3MXLA 2WBIA 4NXLA 4W9UA 2D29A 2R0MA 2CX9A 4X28C 2R0NA 3X0YA 4Q1OA 3GNCA 3D9DA 4L3XA 2EBAA 4L1FA 5K3IA 2E80A 4Q4UA 4IRNA 4L3ZA 3EONA 1QDBA 1EGDA 2A1TA 2JIFA 1SIQA 1W07A 1EGCA 4IV6A 1UKWA 2VR0A 3AFEA 1IVHA 3FCJA 3MPJA 4ZXVA 1FS9A 3RKHA 1T9GA 2RFQA 4WJYA 3II9A 4DOYA 3SCEA 3R7KA 4Q5CA 1IS2A 4P13A 3BNGA 3UBRA 3OWAA 1UDYA 2DDHA 3GQTA 1JQIA 2IX6A 2E81A 2YYIA 2JBRA 2Z1QA 3M9VA 2JBTA 1GU6A 4L38A 4M9AA 3MDEA 2YYJA 2OR0A 1RX0A 3FO3A 3P4TA 5K3HA 3UU9A 2ZO5A 3BNFA 2JBSA 4X28A 3SF6A 2ZAFA 3TTBA 3F29A 2C0UA 3MMOA 3D9EA 3HWCA 3LG1A 4G5EA 3MKHA 2YYMA 2VIGA 4U83A 4ZYJA 3OWMA 4HR3A 1OAHA 2DVLA 2REHA 3L1TA 4O5MA 3TORA 4KTOA 1R2JA 4KCFA 1FS8A 2RDZA 4JEKA 3D6BA 3MDDA 4Q5BA 3GM6A 4N5FA 2J7AA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3EOM A;  3BNJ A;  3SWO A;  3BNH A;  1FS7 A;  1SIR A;  4OO2 A;  3D1I A;  3D9F A;  4XVX A;  2UXW A;  3SXQ A;  2C12 A;  2PG0 A;  3B96 A;  3NF4 A;  4Q17 A;  1EGE A;  3D9G A;  1BUC A;  2YYG A;  2OT4 A;  3X0X A;  4RM7 A;  2RF7 A;  2IX5 A;  3OIB A;  5K3G A;  4L3Y A;  4Q0T A;  1U8V A;  1WS9 A;  3PFD A;  2FON A;  3LGQ A;  5K3J A;  3S7W A;  2YYL A;  2YYK A;  3AFF A;  3MPI A;  3MXL A;  2WBI A;  4NXL A;  4W9U A;  2D29 A;  2R0M A;  2CX9 A;  4X28 C;  2R0N A;  3X0Y A;  4Q1O A;  3GNC A;  3D9D A;  4L3X A;  2EBA A;  4L1F A;  5K3I A;  2E80 A;  4Q4U A;  4IRN A;  4L3Z A;  3EON A;  1QDB A;  1EGD A;  2A1T A;  2JIF A;  1SIQ A;  1W07 A;  1EGC A;  4IV6 A;  1UKW A;  2VR0 A;  3AFE A;  1IVH A;  3FCJ A;  3MPJ A;  4ZXV A;  1FS9 A;  3RKH A;  1T9G A;  2RFQ A;  4WJY A;  3II9 A;  4DOY A;  3SCE A;  3R7K A;  4Q5C A;  1IS2 A;  4P13 A;  3BNG A;  3UBR A;  3OWA A;  1UDY A;  2DDH A;  3GQT A;  1JQI A;  2IX6 A;  2E81 A;  2YYI A;  2JBR A;  2Z1Q A;  3M9V A;  2JBT A;  1GU6 A;  4L38 A;  4M9A A;  3MDE A;  2YYJ A;  2OR0 A;  1RX0 A;  3FO3 A;  3P4T A;  5K3H A;  3UU9 A;  2ZO5 A;  3BNF A;  2JBS A;  4X28 A;  3SF6 A;  2ZAF A;  3TTB A;  3F29 A;  2C0U A;  3MMO A;  3D9E A;  3HWC A;  3LG1 A;  4G5E A;  3MKH A;  2YYM A;  2VIG A;  4U83 A;  4ZYJ A;  3OWM A;  4HR3 A;  1OAH A;  2DVL A;  2REH A;  3L1T A;  4O5M A;  3TOR A;  4KTO A;  1R2J A;  4KCF A;  1FS8 A;  2RDZ A;  4JEK A;  3D6B A;  3MDD A;  4Q5B A;  3GM6 A;  4N5F A;  2J7A A; 
#chains in the Genus database with same CATH topology
 2XS1 A;  3EOM A;  2AO2 A;  4HKS A;  2VF1 A;  3BNJ A;  3SWO A;  4AKI A;  5GJW E;  3BNH A;  1FS7 A;  1Y0V A;  4LQQ B;  2EBH X;  1SIR A;  3TZ2 A;  2YGW A;  4OO2 A;  3U33 A;  3D1I A;  3D9F A;  2CJ5 A;  4XVX A;  3CRK A;  4DZY A;  2UXW A;  3SXQ A;  2R02 A;  5M4P A;  2EBF X;  3Q0A A;  2C12 A;  2PG0 A;  1LVC A;  2QR4 A;  1XFZ A;  3B96 A;  3C2P A;  3NF4 A;  2GBB A;  1EGE A;  4Q17 A;  3D9G A;  1BUC A;  2BU8 A;  2YYG A;  2OT4 A;  3X0X A;  4RM7 A;  1K90 A;  2RF7 A;  2ZDX A;  2IX5 A;  3OIB A;  5K3G A;  2BU5 A;  4L3Y A;  4Q0T A;  1U8V A;  2CJ7 A;  2OEX A;  1WS9 A;  4H7Q A;  1S26 A;  3PFD A;  2OJQ A;  4V26 A;  2FON A;  2PNR A;  3LGQ A;  5K3J A;  3S7W A;  2R03 A;  2YYL A;  2YYK A;  3AFF A;  3VKG A;  3MPI A;  3MXL A;  2WBI A;  4NXL A;  1X90 A;  2XQR B;  3D2R A;  3X29 A;  4W9U A;  2D29 A;  1RJ1 A;  2R0M A;  2Q8H A;  2CX9 A;  4X28 C;  2R0N A;  3X0Y A;  2BU7 A;  2ZKJ A;  5EZ3 A;  5BRK A;  1RJ4 A;  4Q1O A;  3GNC A;  4KS9 A;  3D9D A;  2OEV A;  4LQS B;  4MPN A;  1X91 A;  4L3X A;  2EBA A;  5M4N A;  1K8T A;  4L1F A;  4FF4 A;  2CJ4 A;  5K3I A;  2E80 A;  4FZ4 A;  4KSF A;  4Q4U A;  4IRN A;  4L3Z A;  3EON A;  4FF2 A;  1SK6 A;  1QDB A;  4V25 A;  1EGD A;  2A1T A;  2JIF A;  1RP3 A;  2Q8G A;  4F0X A;  3TZ4 A;  1SIQ A;  1W07 A;  2BU6 A;  3N0R A;  3VAD A;  5M4M A;  5B6B A;  1EGC A;  4IV6 A;  1UKW A;  2VR0 A;  2ZDY A;  4MPE A;  3C3L A;  3VKH A;  3AFE A;  2AZE A;  1IVH A;  3FCJ A;  3MPJ A;  4ZXV A;  1FS9 A;  5B5V A;  3RKH A;  1T9G A;  2RFQ A;  4WJY A;  4HKR A;  3II9 A;  4DOY A;  3SCE A;  3R7K A;  4Q5C A;  3DJL A;  1IS2 A;  4P13 A;  1XFV A;  3BNG A;  1X8Z A;  3UBR A;  3OWA A;  3Q24 A;  1UDY A;  1PK0 A;  2DDH A;  1SC5 A;  1XG2 B;  2CJ8 A;  4MPC A;  4J1V A;  1JM6 A;  3GQT A;  2FP1 A;  2LFW A;  3CE2 A;  3TZ0 A;  1JQI A;  2IX6 A;  3TZ5 A;  2E81 A;  2YYI A;  4AI6 A;  5GJV E;  2JBR A;  2Z1Q A;  3M9V A;  4E00 A;  2JBT A;  1GU6 A;  1XFX A;  2F6L A;  4L38 A;  4M9A A;  4P79 A;  1GKX A;  3MDE A;  2YYJ A;  4QIC A;  2OR0 A;  1RX0 A;  4JIZ A;  3C46 A;  3KML A;  3FO3 A;  3P4T A;  4G97 A;  5K3H A;  5BRM A;  4E02 A;  3UU9 A;  2CJ6 A;  2ZO5 A;  4AKG A;  3BNF A;  2JBS A;  4JIO A;  1GJV A;  4AKH A;  1GKZ A;  5J71 A;  2BTZ A;  4X28 A;  1Y8P A;  2Q8I A;  5J6A A;  3SF6 A;  1PI1 A;  2ZAF A;  3Q22 A;  3TTB A;  4FF3 A;  3CRL A;  1Y8O A;  3F29 A;  2C0U A;  3MMO A;  1R3B A;  3D9E A;  2R05 A;  3HWC A;  3LG1 A;  3Q23 A;  1Y8N A;  3MKH A;  2YYM A;  2VIG A;  4G5E A;  5B5W A;  4U83 A;  4ZYJ A;  3OWM A;  2FP2 A;  1K93 A;  4HR3 A;  2PO4 A;  1OAH A;  2DVL A;  4FF1 A;  1XFW A;  4E01 A;  2REH A;  4MP2 A;  2Q8F A;  3L1T A;  4O5M A;  2EC5 A;  1XFU A;  3TOR A;  4KTO A;  1R2J A;  4H81 A;  4KCF A;  4KSA A;  1FS8 A;  1XFY A;  2RDZ A;  5M4K A;  4JEK A;  3D6B A;  3MDD A;  2XS8 A;  4H85 A;  4MP7 A;  2E0A A;  3GM6 A;  4Q5B A;  2HJN A;  4N5F A;  2J7A A;  2BU2 A; 
#chains in the Genus database with same CATH homology
 3EOM A;  3BNJ A;  3SWO A;  3BNH A;  1FS7 A;  1SIR A;  4OO2 A;  3D1I A;  3D9F A;  4XVX A;  2UXW A;  3SXQ A;  2C12 A;  2PG0 A;  3B96 A;  3NF4 A;  4Q17 A;  1EGE A;  3D9G A;  1BUC A;  2YYG A;  2OT4 A;  3X0X A;  4RM7 A;  2RF7 A;  2IX5 A;  3OIB A;  5K3G A;  4L3Y A;  4Q0T A;  1U8V A;  1WS9 A;  3PFD A;  2FON A;  3LGQ A;  5K3J A;  3S7W A;  2YYL A;  2YYK A;  3AFF A;  3MPI A;  3MXL A;  2WBI A;  4NXL A;  4W9U A;  2D29 A;  2R0M A;  2CX9 A;  4X28 C;  2R0N A;  3X0Y A;  4Q1O A;  3GNC A;  3D9D A;  4L3X A;  2EBA A;  4L1F A;  5K3I A;  2E80 A;  4Q4U A;  4IRN A;  4L3Z A;  3EON A;  1QDB A;  1EGD A;  2A1T A;  2JIF A;  1SIQ A;  1W07 A;  1EGC A;  4IV6 A;  1UKW A;  2VR0 A;  3AFE A;  1IVH A;  3FCJ A;  3MPJ A;  4ZXV A;  1FS9 A;  3RKH A;  1T9G A;  2RFQ A;  4WJY A;  3II9 A;  4DOY A;  3SCE A;  3R7K A;  4Q5C A;  1IS2 A;  4P13 A;  3BNG A;  3UBR A;  3OWA A;  1UDY A;  2DDH A;  3GQT A;  1JQI A;  2IX6 A;  2E81 A;  2YYI A;  2JBR A;  2Z1Q A;  3M9V A;  2JBT A;  1GU6 A;  4L38 A;  4M9A A;  3MDE A;  2YYJ A;  2OR0 A;  1RX0 A;  3FO3 A;  3P4T A;  5K3H A;  3UU9 A;  2ZO5 A;  3BNF A;  2JBS A;  4X28 A;  3SF6 A;  2ZAF A;  3TTB A;  3F29 A;  2C0U A;  3MMO A;  3D9E A;  3HWC A;  3LG1 A;  4G5E A;  3MKH A;  2YYM A;  2VIG A;  4U83 A;  4ZYJ A;  3OWM A;  4HR3 A;  1OAH A;  2DVL A;  2REH A;  3L1T A;  4O5M A;  3TOR A;  4KTO A;  1R2J A;  4KCF A;  1FS8 A;  2RDZ A;  4JEK A;  3D6B A;  3MDD A;  4Q5B A;  3GM6 A;  4N5F A;  2J7A A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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