3D9EA

Nitroalkane oxidase: active site mutant d402n crystallized with 1-nitrooctane
Total Genus 158
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
158
sequence length
431
structure length
431
Chain Sequence
b'VDFKLSPSQLEARRHAQAFANTVLTKASAEYSTQKDQLSRFQATRPFYREAVRHGLIKAQVPIPLGGTMESLVHESIILEELFAVEPATSITIVATALGLMPVILCDSPSLQEKFLKPFISGEGEPLASLMHSEPNGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNSGGWDYKGADLACVVCRVSDDPSKPQDPNVDPATQIAVLLVTRETIANNKKDAYQILGEPELAGHITTSGPHTRFTEFHVPHENLLCTPGLKAQGLVETAFAMSAALVGAMAIGTARAAFEEALVFAKSDTRGGSKHIIEHQSVADKLIDCKIRLETSRLLVWKAVTTLEDEALEWKVKLEMAMQTKIYTTDVAVECVIDAMKAVGMKSYAKDMSFPRLLNEVMCYPLFNGGNIGLRRRQMQRVMALEDYEPWAATYGSS'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Nitroalkane oxidase
publication title Crystal structures of intermediates in the nitroalkane oxidase reaction.
pubmed doi rcsb
source organism Fusarium oxysporum
molecule tags Oxidoreductase
total genus 158
structure length 431
sequence length 431
chains with identical sequence B, C, D
ec nomenclature ec 1.7.3.1: Nitroalkane oxidase.
pdb deposition date 2008-05-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00441 Acyl-CoA_dh_1 Acyl-CoA dehydrogenase, C-terminal domain
A PF02771 Acyl-CoA_dh_N Acyl-CoA dehydrogenase, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.540.10 Mainly Alpha Orthogonal Bundle Butyryl-Coa Dehydrogenase, subunit A; domain 1 Acyl-CoA dehydrogenase/oxidase, N-terminal domain 3d9eA01
1.20.140.10 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A; domain 3 Butyryl-CoA Dehydrogenase, subunit A, domain 3 3d9eA03
2.40.110.10 Mainly Beta Beta Barrel Butyryl-CoA Dehydrogenase, subunit A; domain 2 Butyryl-CoA Dehydrogenase, subunit A, domain 2 3d9eA02
1EGEA 2R0MA 2J7AA 2UXWA 2YYMA 3LG1A 2PG0A 1U8VA 4WJYA 3UU9A 4IRNA 2REHA 5K3IA 3GQTA 4Q5BA 1JQIA 3D9FA 3TORA 3F29A 1EGDA 2IX5A 4OO2A 1SIQA 3M9VA 1UDYA 2RFQA 3EOMA 3BNFA 1SIRA 3SXQA 1IS2A 4XVXA 3X0XA 1UKWA 4Q1OA 3OWMA 3MPIA 5K3GA 3BNGA 1WS9A 3PFDA 5K3JA 4L3YA 4M9AA 2Z1QA 2ZO5A 3SWOA 2C12A 3D9GA 2E80A 3MDDA 2JBTA 2YYIA 4HR3A 3RKHA 1OAHA 4Q4UA 4L1FA 2JIFA 1EGCA 1FS8A 4N5FA 3SF6A 2CX9A 2RDZA 3BNHA 1W07A 3MKHA 4ZXVA 2VIGA 4IV6A 1BUCA 5K3HA 3P4TA 3AFEA 4KTOA 4Q0TA 4JEKA 3LGQA 2R0NA 4Q17A 2IX6A 3II9A 4RM7A 3SCEA 3FO3A 3GNCA 3L1TA 2WBIA 1FS9A 3D9EA 3D1IA 2DDHA 2EBAA 3MPJA 3OWAA 3HWCA 3MXLA 4Q5CA 2OR0A 2DVLA 3X0YA 4ZYJA 1IVHA 4X28C 4L38A 4X28A 4KCFA 3B96A 2JBRA 3EONA 4O5MA 1R2JA 2FONA 3TTBA 4G5EA 2YYJA 1QDBA 4L3XA 4P13A 2YYKA 4L3ZA 2A1TA 1T9GA 2JBSA 3FCJA 2RF7A 2YYGA 1RX0A 1FS7A 2C0UA 3D9DA 4U83A 1GU6A 3MDEA 3OIBA 3BNJA 3R7KA 2D29A 3GM6A 3D6BA 3S7WA 3AFFA 4DOYA 2OT4A 2VR0A 3MMOA 4W9UA 2E81A 2YYLA 3NF4A 4NXLA 2ZAFA 3UBRA
chains in the Genus database with same CATH superfamily
1EGEA 2R0MA 1RP3A 2J7AA 2UXWA 2YYMA 3LG1A 2PG0A 1U8VA 4WJYA 2Q8FA 1K90A 2Q8GA 3UU9A 4IRNA 2REHA 5K3IA 3GQTA 1Y8OA 4Q5BA 1JQIA 1Y8NA 4P79A 3D9FA 3Q24A 4AI6A 3TORA 2R05A 5B5VA 3F29A 1EGDA 2IX5A 1Y8PA 4OO2A 1SIQA 3M9VA 1UDYA 2RFQA 3EOMA 3BNFA 3TZ0A 1SIRA 3SXQA 3DJLA 1IS2A 4XVXA 3X0XA 1UKWA 2R02A 4HKRA 4Q1OA 4LQSB 2OEXA 4V25A 3OWMA 2EBFX 1XFWA 3MPIA 5K3GA 3BNGA 1WS9A 3PFDA 2CJ6A 5K3JA 2QR4A 2BU2A 3KMLA 3VKGA 4L3YA 4M9AA 2Z1QA 2CJ7A 3SWOA 2C12A 2E0AA 2ZO5A 4DZYA 3D9GA 2E80A 3MDDA 2JBTA 1SK6A 4MPNA 5GJWE 4AKGA 2CJ4A 2YYIA 1RJ1A 4HR3A 3RKHA 3Q0AA 1OAHA 5M4KA 4Q4UA 3C3LA 4L1FA 2CJ8A 1K93A 1RJ4A 2FP1A 4MPEA 2JIFA 3CRLA 1EGCA 1FS8A 4FZ4A 4N5FA 3SF6A 2CX9A 2RDZA 3BNHA 4LQQB 1W07A 4JIZA 4JIOA 3MKHA 2BU6A 3TZ5A 4F0XA 4ZXVA 2VIGA 1SC5A 2EBHX 4IV6A 1K8TA 1BUCA 4HKSA 4MP7A 4FF3A 5K3HA 4AKHA 1PK0A 2OJQA 3P4TA 4QICA 3AFEA 4KTOA 4Q0TA 2XS1A 4JEKA 1JM6A 2ZKJA 3LGQA 3TZ2A 2R0NA 4Q17A 3TZ4A 2IX6A 3II9A 4RM7A 2R03A 3SCEA 5M4MA 2BU5A 1GKXA 3FO3A 3GNCA 3CRKA 2HJNA 2Q8HA 3L1TA 2PO4A 5GJVE 2ZDYA 4H85A 5J71A 2WBIA 1GKZA 5B5WA 1FS9A 3D9EA 3D1IA 3U33A 2DDHA 2EBAA 3MPJA 3OWAA 3HWCA 3CE2A 2Q8IA 3MXLA 4Q5CA 2OR0A 2CJ5A 2OEVA 2YGWA 2DVLA 3X0YA 4ZYJA 3Q22A 3Q23A 1IVHA 5B6BA 4E01A 2ZDXA 4X28C 2BTZA 2VF1A 4FF2A 4H7QA 1R3BA 4L38A 4E00A 1XFUA 4KSFA 4X28A 4KCFA 5BRMA 5M4PA 2BU7A 4V26A 3B96A 4H81A 2JBRA 4MP2A 3EONA 4O5MA 1XFXA 4J1VA 3VKHA 1X91A 2PNRA 1R2JA 3N0RA 3C2PA 2FONA 4KSAA 5BRKA 3TTBA 4AKIA 4G5EA 4MPCA 2YYJA 3VADA 1QDBA 4G97A 4L3XA 4KS9A 2XQRB 5J6AA 4P13A 2YYKA 4L3ZA 2AZEA 2A1TA 1T9GA 2AO2A 2JBSA 3FCJA 4FF4A 2LFWA 1XFYA 3D2RA 2XS8A 2RF7A 2EC5A 4E02A 2YYGA 1RX0A 1FS7A 1PI1A 1X8ZA 2BU8A 1S26A 2C0UA 1LVCA 3D9DA 4U83A 1XG2B 1GU6A 1XFVA 3MDEA 3OIBA 3BNJA 3R7KA 2D29A 2GBBA 1X90A 3GM6A 5M4NA 3D6BA 1Y0VA 3S7WA 3AFFA 1GJVA 4DOYA 2OT4A 2F6LA 2FP2A 4W9UA 2E81A 2VR0A 2YYLA 3MMOA 1XFZA 3NF4A 5EZ3A 4NXLA 3X29A 2ZAFA 3UBRA 4FF1A 3C46A
chains in the Genus database with same CATH topology
1EGEA 2R0MA 2J7AA 2UXWA 2YYMA 3LG1A 2PG0A 1U8VA 4WJYA 3UU9A 4IRNA 2REHA 5K3IA 3GQTA 4Q5BA 1JQIA 3D9FA 3TORA 3F29A 1EGDA 2IX5A 4OO2A 1SIQA 3M9VA 1UDYA 2RFQA 3EOMA 3BNFA 1SIRA 3SXQA 1IS2A 4XVXA 3X0XA 1UKWA 4Q1OA 3OWMA 3MPIA 5K3GA 3BNGA 1WS9A 3PFDA 5K3JA 4L3YA 4M9AA 2Z1QA 2ZO5A 3SWOA 2C12A 3D9GA 2E80A 3MDDA 2JBTA 2YYIA 4HR3A 3RKHA 1OAHA 4Q4UA 4L1FA 2JIFA 1EGCA 1FS8A 4N5FA 3SF6A 2CX9A 2RDZA 3BNHA 1W07A 3MKHA 4ZXVA 2VIGA 4IV6A 1BUCA 5K3HA 3P4TA 3AFEA 4KTOA 4Q0TA 4JEKA 3LGQA 2R0NA 4Q17A 2IX6A 3II9A 4RM7A 3SCEA 3FO3A 3GNCA 3L1TA 2WBIA 1FS9A 3D9EA 3D1IA 2DDHA 2EBAA 3MPJA 3OWAA 3HWCA 3MXLA 4Q5CA 2OR0A 2DVLA 3X0YA 4ZYJA 1IVHA 4X28C 4L38A 4X28A 4KCFA 3B96A 2JBRA 3EONA 4O5MA 1R2JA 2FONA 3TTBA 4G5EA 2YYJA 1QDBA 4L3XA 4P13A 2YYKA 4L3ZA 2A1TA 1T9GA 2JBSA 3FCJA 2RF7A 2YYGA 1RX0A 1FS7A 2C0UA 3D9DA 4U83A 1GU6A 3MDEA 3OIBA 3BNJA 3R7KA 2D29A 3GM6A 3D6BA 3S7WA 3AFFA 4DOYA 2OT4A 2VR0A 3MMOA 4W9UA 2E81A 2YYLA 3NF4A 4NXLA 2ZAFA 3UBRA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1EGE A;  2R0M A;  2J7A A;  2UXW A;  2YYM A;  3LG1 A;  2PG0 A;  1U8V A;  4WJY A;  3UU9 A;  4IRN A;  2REH A;  5K3I A;  3GQT A;  4Q5B A;  1JQI A;  3D9F A;  3TOR A;  3F29 A;  1EGD A;  2IX5 A;  4OO2 A;  1SIQ A;  3M9V A;  1UDY A;  2RFQ A;  3EOM A;  3BNF A;  1SIR A;  3SXQ A;  1IS2 A;  4XVX A;  3X0X A;  1UKW A;  4Q1O A;  3OWM A;  3MPI A;  5K3G A;  3BNG A;  1WS9 A;  3PFD A;  5K3J A;  4L3Y A;  4M9A A;  2Z1Q A;  2ZO5 A;  3SWO A;  2C12 A;  3D9G A;  2E80 A;  3MDD A;  2JBT A;  2YYI A;  4HR3 A;  3RKH A;  1OAH A;  4Q4U A;  4L1F A;  2JIF A;  1EGC A;  1FS8 A;  4N5F A;  3SF6 A;  2CX9 A;  2RDZ A;  3BNH A;  1W07 A;  3MKH A;  4ZXV A;  2VIG A;  4IV6 A;  1BUC A;  5K3H A;  3P4T A;  3AFE A;  4KTO A;  4Q0T A;  4JEK A;  3LGQ A;  2R0N A;  4Q17 A;  2IX6 A;  3II9 A;  4RM7 A;  3SCE A;  3FO3 A;  3GNC A;  3L1T A;  2WBI A;  1FS9 A;  3D9E A;  3D1I A;  2DDH A;  2EBA A;  3MPJ A;  3OWA A;  3HWC A;  3MXL A;  4Q5C A;  2OR0 A;  2DVL A;  3X0Y A;  4ZYJ A;  1IVH A;  4X28 C;  4L38 A;  4X28 A;  4KCF A;  3B96 A;  2JBR A;  3EON A;  4O5M A;  1R2J A;  2FON A;  3TTB A;  4G5E A;  2YYJ A;  1QDB A;  4L3X A;  4P13 A;  2YYK A;  4L3Z A;  2A1T A;  1T9G A;  2JBS A;  3FCJ A;  2RF7 A;  2YYG A;  1RX0 A;  1FS7 A;  2C0U A;  3D9D A;  4U83 A;  1GU6 A;  3MDE A;  3OIB A;  3BNJ A;  3R7K A;  2D29 A;  3GM6 A;  3D6B A;  3S7W A;  3AFF A;  4DOY A;  2OT4 A;  2VR0 A;  3MMO A;  4W9U A;  2E81 A;  2YYL A;  3NF4 A;  4NXL A;  2ZAF A;  3UBR A; 
#chains in the Genus database with same CATH topology
 1EGE A;  2R0M A;  1RP3 A;  2J7A A;  2UXW A;  2YYM A;  3LG1 A;  2PG0 A;  1U8V A;  4WJY A;  2Q8F A;  1K90 A;  2Q8G A;  3UU9 A;  4IRN A;  2REH A;  5K3I A;  3GQT A;  1Y8O A;  4Q5B A;  1JQI A;  1Y8N A;  4P79 A;  3D9F A;  3Q24 A;  4AI6 A;  3TOR A;  2R05 A;  5B5V A;  3F29 A;  1EGD A;  2IX5 A;  1Y8P A;  4OO2 A;  1SIQ A;  3M9V A;  1UDY A;  2RFQ A;  3EOM A;  3BNF A;  3TZ0 A;  1SIR A;  3SXQ A;  3DJL A;  1IS2 A;  4XVX A;  3X0X A;  1UKW A;  2R02 A;  4HKR A;  4Q1O A;  4LQS B;  2OEX A;  4V25 A;  3OWM A;  2EBF X;  1XFW A;  3MPI A;  5K3G A;  3BNG A;  1WS9 A;  3PFD A;  2CJ6 A;  5K3J A;  2QR4 A;  2BU2 A;  3KML A;  3VKG A;  4L3Y A;  4M9A A;  2Z1Q A;  2CJ7 A;  3SWO A;  2C12 A;  2E0A A;  2ZO5 A;  4DZY A;  3D9G A;  2E80 A;  3MDD A;  2JBT A;  1SK6 A;  4MPN A;  5GJW E;  4AKG A;  2CJ4 A;  2YYI A;  1RJ1 A;  4HR3 A;  3RKH A;  3Q0A A;  1OAH A;  5M4K A;  4Q4U A;  3C3L A;  4L1F A;  2CJ8 A;  1K93 A;  1RJ4 A;  2FP1 A;  4MPE A;  2JIF A;  3CRL A;  1EGC A;  1FS8 A;  4FZ4 A;  4N5F A;  3SF6 A;  2CX9 A;  2RDZ A;  3BNH A;  4LQQ B;  1W07 A;  4JIZ A;  4JIO A;  3MKH A;  2BU6 A;  3TZ5 A;  4F0X A;  4ZXV A;  2VIG A;  1SC5 A;  2EBH X;  4IV6 A;  1K8T A;  1BUC A;  4HKS A;  4MP7 A;  4FF3 A;  5K3H A;  4AKH A;  1PK0 A;  2OJQ A;  3P4T A;  4QIC A;  3AFE A;  4KTO A;  4Q0T A;  2XS1 A;  4JEK A;  1JM6 A;  2ZKJ A;  3LGQ A;  3TZ2 A;  2R0N A;  4Q17 A;  3TZ4 A;  2IX6 A;  3II9 A;  4RM7 A;  2R03 A;  3SCE A;  5M4M A;  2BU5 A;  1GKX A;  3FO3 A;  3GNC A;  3CRK A;  2HJN A;  2Q8H A;  3L1T A;  2PO4 A;  5GJV E;  2ZDY A;  4H85 A;  5J71 A;  2WBI A;  1GKZ A;  5B5W A;  1FS9 A;  3D9E A;  3D1I A;  3U33 A;  2DDH A;  2EBA A;  3MPJ A;  3OWA A;  3HWC A;  3CE2 A;  2Q8I A;  3MXL A;  4Q5C A;  2OR0 A;  2CJ5 A;  2OEV A;  2YGW A;  2DVL A;  3X0Y A;  4ZYJ A;  3Q22 A;  3Q23 A;  1IVH A;  5B6B A;  4E01 A;  2ZDX A;  4X28 C;  2BTZ A;  2VF1 A;  4FF2 A;  4H7Q A;  1R3B A;  4L38 A;  4E00 A;  1XFU A;  4KSF A;  4X28 A;  4KCF A;  5BRM A;  5M4P A;  2BU7 A;  4V26 A;  3B96 A;  4H81 A;  2JBR A;  4MP2 A;  3EON A;  4O5M A;  1XFX A;  4J1V A;  3VKH A;  1X91 A;  2PNR A;  1R2J A;  3N0R A;  3C2P A;  2FON A;  4KSA A;  5BRK A;  3TTB A;  4AKI A;  4G5E A;  4MPC A;  2YYJ A;  3VAD A;  1QDB A;  4G97 A;  4L3X A;  4KS9 A;  2XQR B;  5J6A A;  4P13 A;  2YYK A;  4L3Z A;  2AZE A;  2A1T A;  1T9G A;  2AO2 A;  2JBS A;  3FCJ A;  4FF4 A;  2LFW A;  1XFY A;  3D2R A;  2XS8 A;  2RF7 A;  2EC5 A;  4E02 A;  2YYG A;  1RX0 A;  1FS7 A;  1PI1 A;  1X8Z A;  2BU8 A;  1S26 A;  2C0U A;  1LVC A;  3D9D A;  4U83 A;  1XG2 B;  1GU6 A;  1XFV A;  3MDE A;  3OIB A;  3BNJ A;  3R7K A;  2D29 A;  2GBB A;  1X90 A;  3GM6 A;  5M4N A;  3D6B A;  1Y0V A;  3S7W A;  3AFF A;  1GJV A;  4DOY A;  2OT4 A;  2F6L A;  2FP2 A;  4W9U A;  2E81 A;  2VR0 A;  2YYL A;  3MMO A;  1XFZ A;  3NF4 A;  5EZ3 A;  4NXL A;  3X29 A;  2ZAF A;  3UBR A;  4FF1 A;  3C46 A; 
#chains in the Genus database with same CATH homology
 1EGE A;  2R0M A;  2J7A A;  2UXW A;  2YYM A;  3LG1 A;  2PG0 A;  1U8V A;  4WJY A;  3UU9 A;  4IRN A;  2REH A;  5K3I A;  3GQT A;  4Q5B A;  1JQI A;  3D9F A;  3TOR A;  3F29 A;  1EGD A;  2IX5 A;  4OO2 A;  1SIQ A;  3M9V A;  1UDY A;  2RFQ A;  3EOM A;  3BNF A;  1SIR A;  3SXQ A;  1IS2 A;  4XVX A;  3X0X A;  1UKW A;  4Q1O A;  3OWM A;  3MPI A;  5K3G A;  3BNG A;  1WS9 A;  3PFD A;  5K3J A;  4L3Y A;  4M9A A;  2Z1Q A;  2ZO5 A;  3SWO A;  2C12 A;  3D9G A;  2E80 A;  3MDD A;  2JBT A;  2YYI A;  4HR3 A;  3RKH A;  1OAH A;  4Q4U A;  4L1F A;  2JIF A;  1EGC A;  1FS8 A;  4N5F A;  3SF6 A;  2CX9 A;  2RDZ A;  3BNH A;  1W07 A;  3MKH A;  4ZXV A;  2VIG A;  4IV6 A;  1BUC A;  5K3H A;  3P4T A;  3AFE A;  4KTO A;  4Q0T A;  4JEK A;  3LGQ A;  2R0N A;  4Q17 A;  2IX6 A;  3II9 A;  4RM7 A;  3SCE A;  3FO3 A;  3GNC A;  3L1T A;  2WBI A;  1FS9 A;  3D9E A;  3D1I A;  2DDH A;  2EBA A;  3MPJ A;  3OWA A;  3HWC A;  3MXL A;  4Q5C A;  2OR0 A;  2DVL A;  3X0Y A;  4ZYJ A;  1IVH A;  4X28 C;  4L38 A;  4X28 A;  4KCF A;  3B96 A;  2JBR A;  3EON A;  4O5M A;  1R2J A;  2FON A;  3TTB A;  4G5E A;  2YYJ A;  1QDB A;  4L3X A;  4P13 A;  2YYK A;  4L3Z A;  2A1T A;  1T9G A;  2JBS A;  3FCJ A;  2RF7 A;  2YYG A;  1RX0 A;  1FS7 A;  2C0U A;  3D9D A;  4U83 A;  1GU6 A;  3MDE A;  3OIB A;  3BNJ A;  3R7K A;  2D29 A;  3GM6 A;  3D6B A;  3S7W A;  3AFF A;  4DOY A;  2OT4 A;  2VR0 A;  3MMO A;  4W9U A;  2E81 A;  2YYL A;  3NF4 A;  4NXL A;  2ZAF A;  3UBR A; 
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similar chains in the Genus database (?% sequence similarity)
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#similar chains in the Genus database (?% sequence similarity)
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