5EZ3A

Crystal structure acyl-coa dehydrogenase from brucella melitensis in complex with fad
Total Genus 209
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
209
sequence length
540
structure length
540
Chain Sequence
KTHEVTNQTPPITGTNAYLGDPLLMQIAARFPKELHTELEQAGRFVLSAEAQDLARLANTELPKLRTHDRQGRRIDLVEYHPAYHALMRRSVAQGLHSSIWEDNPLESGRRHQARAARFYLTAQLEAGHLCPLTMTSASLAALMASPEVYKQWSPAVLSRKYDFSQKPAFRKQGVTLGMGMTEKQGGTDVRANATRAEPAIGGAWRLTGHKWFMSAPMSDAFLTLAQTKEGLSCFLLPRLGEKGESNGFFFQRLKDKLGNRSNASSEVEFDGALGQMIGSPGEGVKTIMDMVTLTRLDCAVASAGLMRSGLAEAVHHSRHRHVFGKPLVEQPLMQRVLADMALDVAGATALSMRLARAFDMAASDRAEAAFARSMTPVVKYWVCKIAPALLYEAMECLGGNGYIEDGNLARAYREAPVNAIWEGSGNVMALDVARVLSRAPALFDGVLDWISGQLGPRGQGTIDVLRAALQLTETDQGVARLLTEQLAFAAAAAELRQLGADDIADAFIETRLGGLWRTTYGMLDARHNAMRIIDQLYPA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Acyl-CoA dehydrogenase
publication title Crystal structure Acyl-CoA dehydrogenase from Brucella melitensis in complex with FAD
rcsb
source organism Brucella melitensis biotype 1
molecule tags Oxidoreductase
total genus 209
structure length 540
sequence length 540
chains with identical sequence B, C, D
ec nomenclature ec 1.3.8.-:
pdb deposition date 2015-11-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00441 Acyl-CoA_dh_1 Acyl-CoA dehydrogenase, C-terminal domain
A PF02770 Acyl-CoA_dh_M Acyl-CoA dehydrogenase, middle domain
A PF18158 AidB_N Adaptive response protein AidB N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.110.20 Mainly Beta Beta Barrel Butyryl-CoA Dehydrogenase, subunit A; domain 2 Butyryl-CoA Dehydrogenase, subunit A; domain 2 5ez3A03
3DJLA 3U33A 5EZ3A
chains in the Genus database with same CATH superfamily
1UDYA 2IX6A 2YYMA 4X28A 1JQIA 4HR3A 2YYJA 3OWAA 4O5MA 3GQTA 3MDDA 3MDEA 1RX0A 3MPJA 4DOYA 4ZYJA 4U83A 4G5EA 4P13A 5EZ3A 2JBTA 2JIFA 1U8VA 2YYLA 2EBAA 1SIQA 2Z1QA 5K3JA 3D9FA 2C12A 3SF6A 1IS2A 2R0MA 2JBSA 2PG0A 2D29A 2REHA 2CX9A 2RFQA 2YYIA 1EGCA 2VIGA 5K3GA 2C0UA 1W07A 3PFDA 3X0XA 2FONA 5K3HA 3B96A 3U33A 2WBIA 3P4TA 1IVHA 4KCFA 4ZXVA 2OR0A 3M9VA 3MKHA 4IRNA 4JEKA 1T9GA 2UXWA 3DJLA 3MXLA 2DDHA 1EGEA 4W9UA 3D9EA 2YYGA 3MPIA 3X0YA 2ZAFA 1WS9A 3GNCA 3R7KA 3AFFA 3AFEA 3D9DA 2IX5A 1R2JA 1EGDA 5K3IA 2R0NA 4X28C 1SIRA 4M9AA 2DVLA 3NF4A 3II9A 3FCJA 1UKWA 3EONA 4N5FA 2YYKA 1BUCA 3SWOA 3EOMA 2A1TA 4KTOA 4NXLA 3HWCA 4XVXA 4L1FA 3D9GA 2JBRA 4IV6A 4RM7A 3D6BA 3OIBA
chains in the Genus database with same CATH topology
3DJLA 3U33A 5EZ3A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3DJL A;  3U33 A;  5EZ3 A; 
#chains in the Genus database with same CATH topology
 1UDY A;  2IX6 A;  2YYM A;  4X28 A;  1JQI A;  4HR3 A;  2YYJ A;  3OWA A;  4O5M A;  3GQT A;  3MDD A;  3MDE A;  1RX0 A;  3MPJ A;  4DOY A;  4ZYJ A;  4U83 A;  4G5E A;  4P13 A;  5EZ3 A;  2JBT A;  2JIF A;  1U8V A;  2YYL A;  2EBA A;  1SIQ A;  2Z1Q A;  5K3J A;  3D9F A;  2C12 A;  3SF6 A;  1IS2 A;  2R0M A;  2JBS A;  2PG0 A;  2D29 A;  2REH A;  2CX9 A;  2RFQ A;  2YYI A;  1EGC A;  2VIG A;  5K3G A;  2C0U A;  1W07 A;  3PFD A;  3X0X A;  2FON A;  5K3H A;  3B96 A;  3U33 A;  2WBI A;  3P4T A;  1IVH A;  4KCF A;  4ZXV A;  2OR0 A;  3M9V A;  3MKH A;  4IRN A;  4JEK A;  1T9G A;  2UXW A;  3DJL A;  3MXL A;  2DDH A;  1EGE A;  4W9U A;  3D9E A;  2YYG A;  3MPI A;  3X0Y A;  2ZAF A;  1WS9 A;  3GNC A;  3R7K A;  3AFF A;  3AFE A;  3D9D A;  2IX5 A;  1R2J A;  1EGD A;  5K3I A;  2R0N A;  4X28 C;  1SIR A;  4M9A A;  2DVL A;  3NF4 A;  3II9 A;  3FCJ A;  1UKW A;  3EON A;  4N5F A;  2YYK A;  1BUC A;  3SWO A;  3EOM A;  2A1T A;  4KTO A;  4NXL A;  3HWC A;  4XVX A;  4L1F A;  3D9G A;  2JBR A;  4IV6 A;  4RM7 A;  3D6B A;  3OIB A; 
#chains in the Genus database with same CATH homology
 3DJL A;  3U33 A;  5EZ3 A; 
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similar chains in the Genus database (?% sequence similarity)
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