2C12A

Crystal structure of nitroalkane oxidase in complex with spermine, a competitive inhibitor
Total Genus 158
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
158
sequence length
430
structure length
430
Chain Sequence
VDFKLSPSQLEARRHAQAFANTVLTKASAEYSTQKDQLSRFQATRPFYREAVRHGLIKAQVPIPLGGTMESLVHESIILEELFAVEPATSITIVATALGLMPVILCDSPSLQEKFLKPFISGEGEPLASLMHSEPNGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNSGGWDYKGADLACVVCRVSDDPSKPQDPNVDPATQIAVLLVTRETIANNKKDAYQILGEPELAGHITTSGPHTRFTEFHVPHENLLCTPGLKAQGLVETAFAMSAALVGAMAIGTARAAFEEALVFAKSDTRGGSKHIIEHQSVADKLIDCKIRLETSRLLVWKAVTTLEDEALEWKVKLEMAMQTKIYTTDVAVECVIDAMKAVGMKSYAKDMSFPRLLNEVMCYPLFDGGNIGLRRRQMQRVMALEDYEPWAATYGS
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords NITROALKANE OXIDASE
publication title Crystal Structures of Nitroalkane Oxidase: Insights Into the Reaction Mechanism from a Covalent Complex of the Flavoenzyme Trapped During Turnover.
pubmed doi rcsb
source organism Fusarium oxysporum
total genus 158
structure length 430
sequence length 430
chains with identical sequence B, C, D, E, F
ec nomenclature ec 1.7.3.1: Nitroalkane oxidase.
pdb deposition date 2005-09-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00441 Acyl-CoA_dh_1 Acyl-CoA dehydrogenase, C-terminal domain
A PF02771 Acyl-CoA_dh_N Acyl-CoA dehydrogenase, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.540.10 Mainly Alpha Orthogonal Bundle Butyryl-Coa Dehydrogenase, subunit A; domain 1 Acyl-CoA dehydrogenase/oxidase, N-terminal domain 2c12A01
1.20.140.10 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A; domain 3 Butyryl-CoA Dehydrogenase, subunit A, domain 3 2c12A03
2.40.110.10 Mainly Beta Beta Barrel Butyryl-CoA Dehydrogenase, subunit A; domain 2 Butyryl-CoA Dehydrogenase, subunit A, domain 2 2c12A02
1FS9A 4X28A 3D6BA 1FS8A 4N5FA 4WJYA 3PFDA 4X28C 3BNFA 4JEKA 2WBIA 4W9UA 2R0NA 2OT4A 3II9A 1SIRA 2CX9A 1GU6A 2PG0A 3MDEA 2VR0A 2VIGA 2YYKA 2RFQA 4U83A 3UU9A 3FO3A 1IVHA 3SWOA 3D9EA 2YYMA 4P13A 2IX5A 4KTOA 1T9GA 3MXLA 4OO2A 2FONA 5K3IA 3RKHA 2JBRA 2YYLA 2Z1QA 3SF6A 2ZAFA 2REHA 4L3XA 1UDYA 2A1TA 2YYJA 4L3ZA 2R0MA 1EGCA 4HR3A 3MPIA 4ZYJA 2E80A 4G5EA 4RM7A 4KCFA 4L3YA 3D1IA 3L1TA 2RF7A 2OR0A 3HWCA 4L38A 3LG1A 3S7WA 1WS9A 3B96A 2ZO5A 4Q5CA 4O5MA 2JBSA 4XVXA 3SCEA 3GNCA 3MKHA 4Q1OA 1QDBA 4L1FA 1FS7A 2E81A 3X0XA 2UXWA 1UKWA 3OWAA 1EGDA 2DVLA 1RX0A 3R7KA 3AFFA 3MMOA 3OIBA 4Q17A 2IX6A 5K3JA 1W07A 5K3GA 3LGQA 5K3HA 3AFEA 3TTBA 1EGEA 1SIQA 3M9VA 3BNGA 3P4TA 3X0YA 2J7AA 1U8VA 1JQIA 2C0UA 4Q0TA 3OWMA 2YYIA 3BNHA 2D29A 2C12A 3F29A 2RDZA 3SXQA 3D9GA 3EONA 4IV6A 3BNJA 3TORA 1BUCA 2JIFA 4M9AA 3GQTA 4DOYA 4NXLA 4Q4UA 2JBTA 3NF4A 4ZXVA 3EOMA 4Q5BA 4IRNA 2EBAA 1R2JA 3GM6A 2DDHA 1OAHA 3FCJA 1IS2A 3D9FA 3MPJA 2YYGA 3D9DA 3MDDA 3UBRA
chains in the Genus database with same CATH superfamily
1FS9A 4P79A 4X28A 2EC5A 3TZ5A 5M4NA 3D6BA 1FS8A 4N5FA 4WJYA 2R02A 3PFDA 4E00A 4X28C 3BNFA 4JEKA 2LFWA 2WBIA 2BU7A 5J71A 4W9UA 2R0NA 2VF1A 4LQQB 4E02A 2OT4A 3II9A 1SIRA 2CX9A 1GU6A 2PG0A 3MDEA 1XFVA 2CJ4A 2FP2A 2VIGA 2VR0A 2YYKA 4LQSB 3Q0AA 4AKGA 2RFQA 5M4KA 2EBHX 1K90A 1GKZA 1PK0A 4U83A 3UU9A 3C46A 1SK6A 3FO3A 2AZEA 1IVHA 3SWOA 4FF4A 3D9EA 1RJ4A 4F0XA 5M4MA 4MPCA 2YYMA 4P13A 4HKRA 2CJ6A 4FF3A 2IX5A 4KTOA 1T9GA 3MXLA 2ZKJA 4OO2A 2FONA 5K3IA 1XFXA 1X91A 3N0RA 3RKHA 2JBRA 2YYLA 5B6BA 2CJ5A 2Z1QA 1SC5A 3SF6A 2BU8A 2ZAFA 2REHA 2R05A 2HJNA 3X29A 1PI1A 4AI6A 4L3XA 5GJWE 1UDYA 2A1TA 2YYJA 4J1VA 2R0MA 4L3ZA 3TZ0A 1EGCA 4HR3A 2E0AA 3MPIA 4ZYJA 2E80A 4FZ4A 4RM7A 2YGWA 1Y8NA 4G5EA 4KCFA 3CRKA 2BTZA 3D1IA 4KS9A 4L3YA 2OEVA 2Q8FA 3L1TA 2F6LA 4E01A 2RF7A 2XS1A 2OR0A 3HWCA 3KMLA 4JIOA 4L38A 5M4PA 2GBBA 2Q8IA 3LG1A 4HKSA 1GJVA 2PNRA 3S7WA 3VKHA 2XQRB 1WS9A 3B96A 2ZO5A 4Q5CA 2QR4A 4O5MA 4MPNA 5BRMA 2JBSA 4XVXA 1R3BA 3SCEA 3Q22A 2BU2A 3GNCA 3MKHA 3VADA 2ZDXA 3VKGA 1GKXA 2CJ7A 4Q1OA 4V26A 1X90A 1QDBA 4JIZA 1S26A 4L1FA 3CRLA 3C3LA 2BU5A 1FS7A 2E81A 3X0XA 2UXWA 1K93A 1UKWA 3OWAA 3Q23A 1XG2B 1EGDA 2DVLA 1RX0A 1X8ZA 3R7KA 2ZDYA 3AFFA 2PO4A 3MMOA 3OIBA 4Q17A 2IX6A 3C2PA 5K3JA 5B5VA 5EZ3A 4AKIA 1W07A 5K3GA 3LGQA 4H7QA 5K3HA 3AFEA 3TTBA 1EGEA 1XFYA 1SIQA 3M9VA 3BNGA 3P4TA 3Q24A 3X0YA 1Y0VA 2J7AA 1U8VA 1JQIA 2C0UA 4Q0TA 3OWMA 2YYIA 2AO2A 5J6AA 2OJQA 1RP3A 3BNHA 2D29A 2C12A 3F29A 4KSAA 1Y8PA 4QICA 1JM6A 1LVCA 1Y8OA 2RDZA 3SXQA 2OEXA 1XFUA 2R03A 3D9GA 3EONA 4IV6A 1XFWA 2CJ8A 2EBFX 1BUCA 3BNJA 4MP2A 5GJVE 3TORA 3TZ4A 4AKHA 2JIFA 3CE2A 4FF1A 4M9AA 3DJLA 3GQTA 4DOYA 1K8TA 4MPEA 4NXLA 2FP1A 4Q4UA 4FF2A 5B5WA 3D2RA 2JBTA 3NF4A 4ZXVA 1XFZA 4V25A 2Q8GA 4H81A 4G97A 3EOMA 4MP7A 4Q5BA 3TZ2A 1RJ1A 2XS8A 4H85A 3U33A 4IRNA 2EBAA 2BU6A 1R2JA 3GM6A 2DDHA 1OAHA 3FCJA 1IS2A 3D9FA 2Q8HA 3MPJA 2YYGA 4KSFA 4DZYA 3D9DA 3MDDA 3UBRA 5BRKA
chains in the Genus database with same CATH topology
1FS9A 4X28A 3D6BA 1FS8A 4N5FA 4WJYA 3PFDA 4X28C 3BNFA 4JEKA 2WBIA 4W9UA 2R0NA 2OT4A 3II9A 1SIRA 2CX9A 1GU6A 2PG0A 3MDEA 2VR0A 2VIGA 2YYKA 2RFQA 4U83A 3UU9A 3FO3A 1IVHA 3SWOA 3D9EA 2YYMA 4P13A 2IX5A 4KTOA 1T9GA 3MXLA 4OO2A 2FONA 5K3IA 3RKHA 2JBRA 2YYLA 2Z1QA 3SF6A 2ZAFA 2REHA 4L3XA 1UDYA 2A1TA 2YYJA 4L3ZA 2R0MA 1EGCA 4HR3A 3MPIA 4ZYJA 2E80A 4G5EA 4RM7A 4KCFA 4L3YA 3D1IA 3L1TA 2RF7A 2OR0A 3HWCA 4L38A 3LG1A 3S7WA 1WS9A 3B96A 2ZO5A 4Q5CA 4O5MA 2JBSA 4XVXA 3SCEA 3GNCA 3MKHA 4Q1OA 1QDBA 4L1FA 1FS7A 2E81A 3X0XA 2UXWA 1UKWA 3OWAA 1EGDA 2DVLA 1RX0A 3R7KA 3AFFA 3MMOA 3OIBA 4Q17A 2IX6A 5K3JA 1W07A 5K3GA 3LGQA 5K3HA 3AFEA 3TTBA 1EGEA 1SIQA 3M9VA 3BNGA 3P4TA 3X0YA 2J7AA 1U8VA 1JQIA 2C0UA 4Q0TA 3OWMA 2YYIA 3BNHA 2D29A 2C12A 3F29A 2RDZA 3SXQA 3D9GA 3EONA 4IV6A 3BNJA 3TORA 1BUCA 2JIFA 4M9AA 3GQTA 4DOYA 4NXLA 4Q4UA 2JBTA 3NF4A 4ZXVA 3EOMA 4Q5BA 4IRNA 2EBAA 1R2JA 3GM6A 2DDHA 1OAHA 3FCJA 1IS2A 3D9FA 3MPJA 2YYGA 3D9DA 3MDDA 3UBRA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1FS9 A;  4X28 A;  3D6B A;  1FS8 A;  4N5F A;  4WJY A;  3PFD A;  4X28 C;  3BNF A;  4JEK A;  2WBI A;  4W9U A;  2R0N A;  2OT4 A;  3II9 A;  1SIR A;  2CX9 A;  1GU6 A;  2PG0 A;  3MDE A;  2VR0 A;  2VIG A;  2YYK A;  2RFQ A;  4U83 A;  3UU9 A;  3FO3 A;  1IVH A;  3SWO A;  3D9E A;  2YYM A;  4P13 A;  2IX5 A;  4KTO A;  1T9G A;  3MXL A;  4OO2 A;  2FON A;  5K3I A;  3RKH A;  2JBR A;  2YYL A;  2Z1Q A;  3SF6 A;  2ZAF A;  2REH A;  4L3X A;  1UDY A;  2A1T A;  2YYJ A;  4L3Z A;  2R0M A;  1EGC A;  4HR3 A;  3MPI A;  4ZYJ A;  2E80 A;  4G5E A;  4RM7 A;  4KCF A;  4L3Y A;  3D1I A;  3L1T A;  2RF7 A;  2OR0 A;  3HWC A;  4L38 A;  3LG1 A;  3S7W A;  1WS9 A;  3B96 A;  2ZO5 A;  4Q5C A;  4O5M A;  2JBS A;  4XVX A;  3SCE A;  3GNC A;  3MKH A;  4Q1O A;  1QDB A;  4L1F A;  1FS7 A;  2E81 A;  3X0X A;  2UXW A;  1UKW A;  3OWA A;  1EGD A;  2DVL A;  1RX0 A;  3R7K A;  3AFF A;  3MMO A;  3OIB A;  4Q17 A;  2IX6 A;  5K3J A;  1W07 A;  5K3G A;  3LGQ A;  5K3H A;  3AFE A;  3TTB A;  1EGE A;  1SIQ A;  3M9V A;  3BNG A;  3P4T A;  3X0Y A;  2J7A A;  1U8V A;  1JQI A;  2C0U A;  4Q0T A;  3OWM A;  2YYI A;  3BNH A;  2D29 A;  2C12 A;  3F29 A;  2RDZ A;  3SXQ A;  3D9G A;  3EON A;  4IV6 A;  3BNJ A;  3TOR A;  1BUC A;  2JIF A;  4M9A A;  3GQT A;  4DOY A;  4NXL A;  4Q4U A;  2JBT A;  3NF4 A;  4ZXV A;  3EOM A;  4Q5B A;  4IRN A;  2EBA A;  1R2J A;  3GM6 A;  2DDH A;  1OAH A;  3FCJ A;  1IS2 A;  3D9F A;  3MPJ A;  2YYG A;  3D9D A;  3MDD A;  3UBR A; 
#chains in the Genus database with same CATH topology
 1FS9 A;  4P79 A;  4X28 A;  2EC5 A;  3TZ5 A;  5M4N A;  3D6B A;  1FS8 A;  4N5F A;  4WJY A;  2R02 A;  3PFD A;  4E00 A;  4X28 C;  3BNF A;  4JEK A;  2LFW A;  2WBI A;  2BU7 A;  5J71 A;  4W9U A;  2R0N A;  2VF1 A;  4LQQ B;  4E02 A;  2OT4 A;  3II9 A;  1SIR A;  2CX9 A;  1GU6 A;  2PG0 A;  3MDE A;  1XFV A;  2CJ4 A;  2FP2 A;  2VIG A;  2VR0 A;  2YYK A;  4LQS B;  3Q0A A;  4AKG A;  2RFQ A;  5M4K A;  2EBH X;  1K90 A;  1GKZ A;  1PK0 A;  4U83 A;  3UU9 A;  3C46 A;  1SK6 A;  3FO3 A;  2AZE A;  1IVH A;  3SWO A;  4FF4 A;  3D9E A;  1RJ4 A;  4F0X A;  5M4M A;  4MPC A;  2YYM A;  4P13 A;  4HKR A;  2CJ6 A;  4FF3 A;  2IX5 A;  4KTO A;  1T9G A;  3MXL A;  2ZKJ A;  4OO2 A;  2FON A;  5K3I A;  1XFX A;  1X91 A;  3N0R A;  3RKH A;  2JBR A;  2YYL A;  5B6B A;  2CJ5 A;  2Z1Q A;  1SC5 A;  3SF6 A;  2BU8 A;  2ZAF A;  2REH A;  2R05 A;  2HJN A;  3X29 A;  1PI1 A;  4AI6 A;  4L3X A;  5GJW E;  1UDY A;  2A1T A;  2YYJ A;  4J1V A;  2R0M A;  4L3Z A;  3TZ0 A;  1EGC A;  4HR3 A;  2E0A A;  3MPI A;  4ZYJ A;  2E80 A;  4FZ4 A;  4RM7 A;  2YGW A;  1Y8N A;  4G5E A;  4KCF A;  3CRK A;  2BTZ A;  3D1I A;  4KS9 A;  4L3Y A;  2OEV A;  2Q8F A;  3L1T A;  2F6L A;  4E01 A;  2RF7 A;  2XS1 A;  2OR0 A;  3HWC A;  3KML A;  4JIO A;  4L38 A;  5M4P A;  2GBB A;  2Q8I A;  3LG1 A;  4HKS A;  1GJV A;  2PNR A;  3S7W A;  3VKH A;  2XQR B;  1WS9 A;  3B96 A;  2ZO5 A;  4Q5C A;  2QR4 A;  4O5M A;  4MPN A;  5BRM A;  2JBS A;  4XVX A;  1R3B A;  3SCE A;  3Q22 A;  2BU2 A;  3GNC A;  3MKH A;  3VAD A;  2ZDX A;  3VKG A;  1GKX A;  2CJ7 A;  4Q1O A;  4V26 A;  1X90 A;  1QDB A;  4JIZ A;  1S26 A;  4L1F A;  3CRL A;  3C3L A;  2BU5 A;  1FS7 A;  2E81 A;  3X0X A;  2UXW A;  1K93 A;  1UKW A;  3OWA A;  3Q23 A;  1XG2 B;  1EGD A;  2DVL A;  1RX0 A;  1X8Z A;  3R7K A;  2ZDY A;  3AFF A;  2PO4 A;  3MMO A;  3OIB A;  4Q17 A;  2IX6 A;  3C2P A;  5K3J A;  5B5V A;  5EZ3 A;  4AKI A;  1W07 A;  5K3G A;  3LGQ A;  4H7Q A;  5K3H A;  3AFE A;  3TTB A;  1EGE A;  1XFY A;  1SIQ A;  3M9V A;  3BNG A;  3P4T A;  3Q24 A;  3X0Y A;  1Y0V A;  2J7A A;  1U8V A;  1JQI A;  2C0U A;  4Q0T A;  3OWM A;  2YYI A;  2AO2 A;  5J6A A;  2OJQ A;  1RP3 A;  3BNH A;  2D29 A;  2C12 A;  3F29 A;  4KSA A;  1Y8P A;  4QIC A;  1JM6 A;  1LVC A;  1Y8O A;  2RDZ A;  3SXQ A;  2OEX A;  1XFU A;  2R03 A;  3D9G A;  3EON A;  4IV6 A;  1XFW A;  2CJ8 A;  2EBF X;  1BUC A;  3BNJ A;  4MP2 A;  5GJV E;  3TOR A;  3TZ4 A;  4AKH A;  2JIF A;  3CE2 A;  4FF1 A;  4M9A A;  3DJL A;  3GQT A;  4DOY A;  1K8T A;  4MPE A;  4NXL A;  2FP1 A;  4Q4U A;  4FF2 A;  5B5W A;  3D2R A;  2JBT A;  3NF4 A;  4ZXV A;  1XFZ A;  4V25 A;  2Q8G A;  4H81 A;  4G97 A;  3EOM A;  4MP7 A;  4Q5B A;  3TZ2 A;  1RJ1 A;  2XS8 A;  4H85 A;  3U33 A;  4IRN A;  2EBA A;  2BU6 A;  1R2J A;  3GM6 A;  2DDH A;  1OAH A;  3FCJ A;  1IS2 A;  3D9F A;  2Q8H A;  3MPJ A;  2YYG A;  4KSF A;  4DZY A;  3D9D A;  3MDD A;  3UBR A;  5BRK A; 
#chains in the Genus database with same CATH homology
 1FS9 A;  4X28 A;  3D6B A;  1FS8 A;  4N5F A;  4WJY A;  3PFD A;  4X28 C;  3BNF A;  4JEK A;  2WBI A;  4W9U A;  2R0N A;  2OT4 A;  3II9 A;  1SIR A;  2CX9 A;  1GU6 A;  2PG0 A;  3MDE A;  2VR0 A;  2VIG A;  2YYK A;  2RFQ A;  4U83 A;  3UU9 A;  3FO3 A;  1IVH A;  3SWO A;  3D9E A;  2YYM A;  4P13 A;  2IX5 A;  4KTO A;  1T9G A;  3MXL A;  4OO2 A;  2FON A;  5K3I A;  3RKH A;  2JBR A;  2YYL A;  2Z1Q A;  3SF6 A;  2ZAF A;  2REH A;  4L3X A;  1UDY A;  2A1T A;  2YYJ A;  4L3Z A;  2R0M A;  1EGC A;  4HR3 A;  3MPI A;  4ZYJ A;  2E80 A;  4G5E A;  4RM7 A;  4KCF A;  4L3Y A;  3D1I A;  3L1T A;  2RF7 A;  2OR0 A;  3HWC A;  4L38 A;  3LG1 A;  3S7W A;  1WS9 A;  3B96 A;  2ZO5 A;  4Q5C A;  4O5M A;  2JBS A;  4XVX A;  3SCE A;  3GNC A;  3MKH A;  4Q1O A;  1QDB A;  4L1F A;  1FS7 A;  2E81 A;  3X0X A;  2UXW A;  1UKW A;  3OWA A;  1EGD A;  2DVL A;  1RX0 A;  3R7K A;  3AFF A;  3MMO A;  3OIB A;  4Q17 A;  2IX6 A;  5K3J A;  1W07 A;  5K3G A;  3LGQ A;  5K3H A;  3AFE A;  3TTB A;  1EGE A;  1SIQ A;  3M9V A;  3BNG A;  3P4T A;  3X0Y A;  2J7A A;  1U8V A;  1JQI A;  2C0U A;  4Q0T A;  3OWM A;  2YYI A;  3BNH A;  2D29 A;  2C12 A;  3F29 A;  2RDZ A;  3SXQ A;  3D9G A;  3EON A;  4IV6 A;  3BNJ A;  3TOR A;  1BUC A;  2JIF A;  4M9A A;  3GQT A;  4DOY A;  4NXL A;  4Q4U A;  2JBT A;  3NF4 A;  4ZXV A;  3EOM A;  4Q5B A;  4IRN A;  2EBA A;  1R2J A;  3GM6 A;  2DDH A;  1OAH A;  3FCJ A;  1IS2 A;  3D9F A;  3MPJ A;  2YYG A;  3D9D A;  3MDD A;  3UBR A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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