5EZ3 | Genus

Total Genus 209

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	209
sequence length	540
structure length	540
Chain Sequence	KTHEVTNQTPPITGTNAYLGDPLLMQIAARFPKELHTELEQAGRFVLSAEAQDLARLANTELPKLRTHDRQGRRIDLVEYHPAYHALMRRSVAQGLHSSIWEDNPLESGRRHQARAARFYLTAQLEAGHLCPLTMTSASLAALMASPEVYKQWSPAVLSRKYDFSQKPAFRKQGVTLGMGMTEKQGGTDVRANATRAEPAIGGAWRLTGHKWFMSAPMSDAFLTLAQTKEGLSCFLLPRLGEKGESNGFFFQRLKDKLGNRSNASSEVEFDGALGQMIGSPGEGVKTIMDMVTLTRLDCAVASAGLMRSGLAEAVHHSRHRHVFGKPLVEQPLMQRVLADMALDVAGATALSMRLARAFDMAASDRAEAAFARSMTPVVKYWVCKIAPALLYEAMECLGGNGYIEDGNLARAYREAPVNAIWEGSGNVMALDVARVLSRAPALFDGVLDWISGQLGPRGQGTIDVLRAALQLTETDQGVARLLTEQLAFAAAAAELRQLGADDIADAFIETRLGGLWRTTYGMLDARHNAMRIIDQLYPA

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Oxidoreductase
source organism	Brucella melitensis biotype 1
publication title	Crystal structure Acyl-CoA dehydrogenase from Brucella melitensis in complex with FAD rcsb
molecule keywords	Acyl-CoA dehydrogenase
total genus	209
structure length	540
sequence length	540
chains with identical sequence	B, C, D
ec nomenclature	ec 1.3.8.-:
pdb deposition date	2015-11-26

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00441	Acyl-CoA_dh_1	Acyl-CoA dehydrogenase, C-terminal domain
A	PF02770	Acyl-CoA_dh_M	Acyl-CoA dehydrogenase, middle domain
A	PF18158	AidB_N	Adaptive response protein AidB N-terminal domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.40.110.20	Mainly Beta	Beta Barrel	Butyryl-CoA Dehydrogenase, subunit A; domain 2	Butyryl-CoA Dehydrogenase, subunit A; domain 2	5ez3A03

3DJLA 3U33A 5EZ3A
chains in the Genus database with same CATH superfamily

2OR0A 4O5MA 2R0NA 2IX5A 3HWCA 2JBSA 2RFQA 3NF4A 2C12A 3OWAA 1BUCA 2UXWA 4KCFA 3PFDA 3X0YA 3D9GA 4W9UA 2ZAFA 3MDDA 2YYKA 4ZXVA 2VIGA 2YYIA 2IX6A 2Z1QA 3D9DA 3DJLA 1IS2A 2EBAA 2YYLA 4IRNA 4NXLA 1SIRA 1T9GA 3D6BA 3B96A 4KTOA 4G5EA 4ZYJA 3R7KA 3OIBA 4M9AA 1IVHA 3MXLA 3MDEA 4N5FA 5K3GA 2DVLA 4XVXA 3AFFA 4U83A 5K3HA 2C0UA 2JIFA 3MPIA 2DDHA 3GNCA 2R0MA 1EGCA 1UKWA 3U33A 3MPJA 2REHA 2YYGA 3M9VA 1EGEA 3X0XA 2FONA 2JBRA 1SIQA 2D29A 3EONA 4DOYA 2A1TA 2YYJA 1RX0A 2PG0A 4X28C 4P13A 1WS9A 3SF6A 3MKHA 2CX9A 3P4TA 3II9A 5K3JA 3D9EA 4IV6A 4L1FA 2JBTA 1W07A 5K3IA 4RM7A 3AFEA 1JQIA 4X28A 1UDYA 2YYMA 3D9FA 5EZ3A 3FCJA 3SWOA 3GQTA 2WBIA 1R2JA 4HR3A 3EOMA 4JEKA 1EGDA 1U8VA
chains in the Genus database with same CATH topology

3DJLA 3U33A 5EZ3A
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 3DJL A;  3U33 A;  5EZ3 A; 
#chains in the Genus database with same CATH topology
 2OR0 A;  4O5M A;  2R0N A;  2IX5 A;  3HWC A;  2JBS A;  2RFQ A;  3NF4 A;  2C12 A;  3OWA A;  1BUC A;  2UXW A;  4KCF A;  3PFD A;  3X0Y A;  3D9G A;  4W9U A;  2ZAF A;  3MDD A;  2YYK A;  4ZXV A;  2VIG A;  2YYI A;  2IX6 A;  2Z1Q A;  3D9D A;  3DJL A;  1IS2 A;  2EBA A;  2YYL A;  4IRN A;  4NXL A;  1SIR A;  1T9G A;  3D6B A;  3B96 A;  4KTO A;  4G5E A;  4ZYJ A;  3R7K A;  3OIB A;  4M9A A;  1IVH A;  3MXL A;  3MDE A;  4N5F A;  5K3G A;  2DVL A;  4XVX A;  3AFF A;  4U83 A;  5K3H A;  2C0U A;  2JIF A;  3MPI A;  2DDH A;  3GNC A;  2R0M A;  1EGC A;  1UKW A;  3U33 A;  3MPJ A;  2REH A;  2YYG A;  3M9V A;  1EGE A;  3X0X A;  2FON A;  2JBR A;  1SIQ A;  2D29 A;  3EON A;  4DOY A;  2A1T A;  2YYJ A;  1RX0 A;  2PG0 A;  4X28 C;  4P13 A;  1WS9 A;  3SF6 A;  3MKH A;  2CX9 A;  3P4T A;  3II9 A;  5K3J A;  3D9E A;  4IV6 A;  4L1F A;  2JBT A;  1W07 A;  5K3I A;  4RM7 A;  3AFE A;  1JQI A;  4X28 A;  1UDY A;  2YYM A;  3D9F A;  5EZ3 A;  3FCJ A;  3SWO A;  3GQT A;  2WBI A;  1R2J A;  4HR3 A;  3EOM A;  4JEK A;  1EGD A;  1U8V A; 
#chains in the Genus database with same CATH homology
 3DJL A;  3U33 A;  5EZ3 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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5EZ3A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations