The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
77
|
sequence length |
237
|
structure length |
224
|
Chain Sequence |
RNIEKSKAVTCLSNRENIKTQIVIAMAEESSKDKNEVIKEVLENKDGKYFETEPKCKSGGIYSATFDKVYVTCTKHPDGIEMARDIHQSMKDLIASFAQDPSIIPGASKGNDDFRKYLLDNKYKNGWPTIPDEFKAKYGLSKDTLYIQPYAYNPTKSDATVVVFANNKTGGNWYTSLVYDYDEGRWYKGKNGISVAGRSWDVDTDSVKSVKTEIHSKEGWGPLN
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Structure of Clostridium difficile PilJ Exhibits Unprecedented Divergence from Known Type IV Pilins.
pubmed doi rcsb |
| molecule keywords |
Fimbrial protein (Pilin)
|
| molecule tags |
Cell adhesion
|
| source organism |
Clostridium difficile
|
| total genus |
77
|
| structure length |
224
|
| sequence length |
237
|
| chains with identical sequence |
B
|
| ec nomenclature | |
| pdb deposition date | 2013-01-25 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF18223 | PilJ_C | Pili PilJ C-terminal domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | Pantoate--beta-alanine Ligase; Chain: A,domain 2 | Pantoate--beta-alanine Ligase; Chain: A,domain 2 | ||
| Alpha Beta | 2-Layer Sandwich | TcpA-like pilin | TcpA-like pilin |
#chains in the Genus database with same CATH superfamily 4IXJ A; #chains in the Genus database with same CATH topology 4DDK A; 2LME A; 3HRV A; 3UK2 A; 2G5Z A; 3IVX A; 2A54 A; 5BW0 B; 3COW A; 2OGF A; 1N2H A; 3IUB A; 3CFH L; 3MXT A; 3CI0 I; 3HL6 A; 4MUF A; 3IOB A; 1ZWT A; 4BHR A; 3Q12 A; 4FZJ A; 2G16 A; 4DDM A; 3IVG A; 1OQV A; 2A86 A; 2A56 A; 1V8F A; 2G2S A; 4MQ6 A; 5KWV A; 2GR8 A; 4G5Y A; 3IME A; 1N2E A; 3IOE A; 3QTT A; 3UY4 A; 1Q5F A; 3IMG A; 4MUE A; 2GW4 A; 2A53 A; 2X3F A; 2A50 A; 2A84 A; 3COZ A; 1N2B A; 1MOP A; 4MUL A; 1N2J A; 3IOC A; 3S0T A; 4MUJ A; 4MUG A; 3INN A; 3UA0 A; 3N8H A; 4EFK A; 1N2O A; 1IHO A; 2G3D A; 3EMO A; 3ISJ A; 4MUN A; 4MUH A; 5HG0 A; 3IOD A; 3FHV A; 2A88 A; 4MUK A; 4G5F A; 3IUE A; 2EJC A; 2RET A; 1N2I A; 5G2F A; 3LE8 A; 3CFA L; 3IVC A; 3AG5 A; 5EXC A; 3AG6 A; 1N2G A; 3FHU A; 2IEC A; 3VOR A; 3CI0 K; 3COY A; 3COV A; 4MUI A; 3Q10 A; 4EF6 A; 4DE5 A; 4DDH A; 3LF4 A; 2A7X A; 3CFF L; 4IXJ A; 2A52 A; 2GR7 A; 2I52 A; 3MUE A; 3CFI A; 1UFV A; 3IMC A; #chains in the Genus database with same CATH homology 4DDK A; 3HRV A; 3UK2 A; 2G5Z A; 3IVX A; 2A54 A; 3COW A; 1N2H A; 3IUB A; 3CFH L; 3MXT A; 3HL6 A; 4MUF A; 3IOB A; 1ZWT A; 4BHR A; 3Q12 A; 4FZJ A; 2G16 A; 4DDM A; 3IVG A; 1OQV A; 2A86 A; 2A56 A; 1V8F A; 2G2S A; 4MQ6 A; 5KWV A; 4G5Y A; 3IME A; 1N2E A; 3IOE A; 3QTT A; 3UY4 A; 1Q5F A; 3IMG A; 4MUE A; 2GW4 A; 2A53 A; 2X3F A; 2A50 A; 2A84 A; 3COZ A; 1N2B A; 1MOP A; 4MUL A; 1N2J A; 3IOC A; 3S0T A; 4MUJ A; 4MUG A; 3INN A; 3UA0 A; 3N8H A; 4EFK A; 1N2O A; 1IHO A; 2G3D A; 3ISJ A; 4MUN A; 4MUH A; 5HG0 A; 3IOD A; 3FHV A; 2A88 A; 4MUK A; 4G5F A; 3IUE A; 2EJC A; 5G2F A; 1N2I A; 3LE8 A; 3CFA L; 3IVC A; 3AG5 A; 5EXC A; 3AG6 A; 1N2G A; 3FHU A; 3VOR A; 3COY A; 3COV A; 4MUI A; 3Q10 A; 4EF6 A; 4DE5 A; 4DDH A; 3LF4 A; 2A7X A; 3CFF L; 4IXJ A; 2A52 A; 3MUE A; 1UFV A; 3IMC A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
