1HB6 | Genus

Total Genus 36

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	36
sequence length	86
structure length	86
Chain Sequence	SQAEFDKAAEEVKHLKTKPADEEMLFIYSHYKQATVGDINTERPGMLDFKGKAKWDAWNELKGTSKEDAMKAYIDKVEELKKKYGI

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Acyl-coenzyme a binding protein
publication title	Binding Site Differences Revealed by Crystal Structures of Plasmodium Falciparum and Bovine Acyl-Coa Binding Protein pubmed doi rcsb
molecule keywords	ACYL-COA BINDING PROTEIN
total genus	36
structure length	86
sequence length	86
ec nomenclature
pdb deposition date	2001-04-12

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00887	ACBP	Acyl CoA binding protein

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.20.80.10	Mainly Alpha	Up-down Bundle	Acyl-CoA Binding Protein	Acyl-CoA Binding Protein	1hb6A00

4F7GA 2CB8A 3QIJA 1MIXA 2I1KA 3U7DA 1J19A 1HB8A 2RQ1A 3AU4A 1GC7A 1Y19B 3U8ZA 4ZRIA 1GG3A 1E5WA 2HE7A 2WH5A 2EMSA 1HB6A 2D2QA 3ZDTA 1ST7A 1NI2A 4P7IA 3WA0A 2FJ9A 1EF1A 1NVLA 1NTIA 1SGHA 3PVLA 4CYEA 4EKUA 4HDQA 1ACAA 3FLVA 2YVCA 3G9WA 2FDQA 2J0MA 3FP5A 1GC6A 2D10A 3AU5A 2ABDA 1MK9B 3EPYA 4ZRKA 2CQUA 2HRJA 2ZPYA 2LBBA 4ZRJA 4HDOA 2AEHA 1ISNA 1MK7B 1HBKA 2D11A 1MIZB 2J0KA 2AL6A 3IVFA 1H4RA 3X23A 3BINA 4NY0A 3PZDA 2COPA 2J0JA 4DXAB 2I1JA 5IJMA 2EMTA 4YL8A
chains in the Genus database with same CATH superfamily

3QIJA 1MIXA 2X0SA 2RQ1A 1GG3A 1E5WA 2EMSA 1HB6A 1NVLA 1NTIA 2R82A 3FLVA 4ILHA 4JKGB 2FDQA 3FP5A 2D10A 2CQUA 3ENBA 3SBGA 4JKGA 1DIKA 5JVLA 2J0KA 3IVFA 4JK7A 4JKBA 4NY0A 2COPA 2J0JA 3AU5A 4ILJA 1Y19B 4JKCA 4ILGB 3U8ZA 1JDEA 4TKNA 1VBGA 2D2QA 3ZDTA 4P7IA 3WA0A 2FJ9A 4JKEA 4EKUA 4CYEA 3PVLA 2YVCA 2J0MA 1GC6A 2HRJA 3E9OA 4GXBA 4JK9A 1HBKA 1VBHA 2AL6A 4DXAB 1KBLA 5IJMA 4F7GA 1J19A 3AU4A 1GC7A 2DIKA 2HE7A 1ST7A 1NI2A 4JKAA 3EPYA 1MK9B 2ZPYA 2AEHA 1ISNA 1MK7B 1MIZB 1KC7A 3X23A 3BINA 3PZDA 4YL8A 2CB8A 4JKFA 2I1KA 3U7DA 3E9PA 1HB8A 1GGOA 4ZRIA 2WH5A 4JKHA 4JK8A 4JKDA 1EF1A 1SGHA 3SBTA 4HDQA 1ACAA 3E9LA 3G9WA 3E66A 2ABDA 4ZRKA 2LBBA 4ZRJA 4HDOA 2D11A 1H4RA 2I1JA 2EMTA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 4F7G A;  2CB8 A;  3QIJ A;  1MIX A;  2I1K A;  3U7D A;  1J19 A;  1HB8 A;  2RQ1 A;  3AU4 A;  1GC7 A;  1Y19 B;  3U8Z A;  4ZRI A;  1GG3 A;  1E5W A;  2HE7 A;  2WH5 A;  2EMS A;  1HB6 A;  2D2Q A;  3ZDT A;  1ST7 A;  1NI2 A;  4P7I A;  3WA0 A;  2FJ9 A;  1EF1 A;  1NVL A;  1NTI A;  1SGH A;  3PVL A;  4CYE A;  4EKU A;  4HDQ A;  1ACA A;  3FLV A;  2YVC A;  3G9W A;  2FDQ A;  2J0M A;  3FP5 A;  1GC6 A;  2D10 A;  3AU5 A;  2ABD A;  1MK9 B;  3EPY A;  4ZRK A;  2CQU A;  2HRJ A;  2ZPY A;  2LBB A;  4ZRJ A;  4HDO A;  2AEH A;  1ISN A;  1MK7 B;  1HBK A;  2D11 A;  1MIZ B;  2J0K A;  2AL6 A;  3IVF A;  1H4R A;  3X23 A;  3BIN A;  4NY0 A;  3PZD A;  2COP A;  2J0J A;  4DXA B;  2I1J A;  5IJM A;  2EMT A;  4YL8 A; 
#chains in the Genus database with same CATH topology
 3QIJ A;  1MIX A;  2X0S A;  2RQ1 A;  1GG3 A;  1E5W A;  2EMS A;  1HB6 A;  1NVL A;  1NTI A;  2R82 A;  3FLV A;  4ILH A;  4JKG B;  2FDQ A;  3FP5 A;  2D10 A;  2CQU A;  3ENB A;  3SBG A;  4JKG A;  1DIK A;  5JVL A;  2J0K A;  3IVF A;  4JK7 A;  4JKB A;  4NY0 A;  2COP A;  2J0J A;  3AU5 A;  4ILJ A;  1Y19 B;  4JKC A;  4ILG B;  3U8Z A;  1JDE A;  4TKN A;  1VBG A;  2D2Q A;  3ZDT A;  4P7I A;  3WA0 A;  2FJ9 A;  4JKE A;  4EKU A;  4CYE A;  3PVL A;  2YVC A;  2J0M A;  1GC6 A;  2HRJ A;  3E9O A;  4GXB A;  4JK9 A;  1HBK A;  1VBH A;  2AL6 A;  4DXA B;  1KBL A;  5IJM A;  4F7G A;  1J19 A;  3AU4 A;  1GC7 A;  2DIK A;  2HE7 A;  1ST7 A;  1NI2 A;  4JKA A;  3EPY A;  1MK9 B;  2ZPY A;  2AEH A;  1ISN A;  1MK7 B;  1MIZ B;  1KC7 A;  3X23 A;  3BIN A;  3PZD A;  4YL8 A;  2CB8 A;  4JKF A;  2I1K A;  3U7D A;  3E9P A;  1HB8 A;  1GGO A;  4ZRI A;  2WH5 A;  4JKH A;  4JK8 A;  4JKD A;  1EF1 A;  1SGH A;  3SBT A;  4HDQ A;  1ACA A;  3E9L A;  3G9W A;  3E66 A;  2ABD A;  4ZRK A;  2LBB A;  4ZRJ A;  4HDO A;  2D11 A;  1H4R A;  2I1J A;  2EMT A; 
#chains in the Genus database with same CATH homology
 3QIJ A;  1MIX A;  2X0S A;  2RQ1 A;  1GG3 A;  1E5W A;  2EMS A;  1HB6 A;  1NVL A;  1NTI A;  2R82 A;  3FLV A;  4ILH A;  4JKG B;  2FDQ A;  3FP5 A;  2D10 A;  2CQU A;  3ENB A;  3SBG A;  4JKG A;  1DIK A;  5JVL A;  2J0K A;  3IVF A;  4JK7 A;  4JKB A;  4NY0 A;  2COP A;  2J0J A;  3AU5 A;  4ILJ A;  1Y19 B;  4JKC A;  4ILG B;  3U8Z A;  1JDE A;  4TKN A;  1VBG A;  2D2Q A;  3ZDT A;  4P7I A;  3WA0 A;  2FJ9 A;  4JKE A;  4EKU A;  4CYE A;  3PVL A;  2YVC A;  2J0M A;  1GC6 A;  2HRJ A;  3E9O A;  4GXB A;  4JK9 A;  1HBK A;  1VBH A;  2AL6 A;  4DXA B;  1KBL A;  5IJM A;  4F7G A;  1J19 A;  3AU4 A;  1GC7 A;  2DIK A;  2HE7 A;  1ST7 A;  1NI2 A;  4JKA A;  3EPY A;  1MK9 B;  2ZPY A;  2AEH A;  1ISN A;  1MK7 B;  1MIZ B;  1KC7 A;  3X23 A;  3BIN A;  3PZD A;  4YL8 A;  2CB8 A;  4JKF A;  2I1K A;  3U7D A;  3E9P A;  1HB8 A;  1GGO A;  4ZRI A;  2WH5 A;  4JKH A;  4JK8 A;  4JKD A;  1EF1 A;  1SGH A;  3SBT A;  4HDQ A;  1ACA A;  3E9L A;  3G9W A;  3E66 A;  2ABD A;  4ZRK A;  2LBB A;  4ZRJ A;  4HDO A;  2D11 A;  1H4R A;  2I1J A;  2EMT A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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1HB6A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations