3EPYA

Crystal structure of human acyl-coa binding domain 7 complexed with palmitoyl-coa
Total Genus 30
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
30
sequence length
88
structure length
88
Chain Sequence
MALQADFDRAAEDVRKLKARPDDGELKELYGLYKQAIVGDINIACPGMLDLKGKAKWEAWNLKKGLSTEDATSAYISKAKELIEKYGI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal Structure of human acyl-CoA binding domain 7 complexed with palmitoyl-Coa
rcsb
molecule tags Lipid binding protein
source organism Homo sapiens
molecule keywords Acyl-CoA-binding domain-containing protein 7
total genus 30
structure length 88
sequence length 88
chains with identical sequence B
ec nomenclature
pdb deposition date 2008-09-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00887 ACBP Acyl CoA binding protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.80.10 Mainly Alpha Up-down Bundle Acyl-CoA Binding Protein Acyl-CoA Binding Protein 3epyA00
2WH5A 1H4RA 5IJMA 2FJ9A 1ACAA 2I1JA 3U8ZA 1E5WA 4HDOA 1EF1A 1Y19B 1MIZB 3QIJA 4HDQA 1NVLA 4EKUA 4F7GA 3X23A 4CYEA 1MIXA 2YVCA 3FP5A 1GG3A 2HE7A 1NI2A 2FDQA 3IVFA 3U7DA 4NY0A 2ABDA 3EPYA 2J0KA 1ST7A 2HRJA 2J0MA 4P7IA 4ZRKA 1HB8A 3G9WA 1SGHA 2EMTA 2D10A 2J0JA 3BINA 3WA0A 1MK9B 2LBBA 2EMSA 3AU5A 1J19A 2CQUA 3PZDA 4YL8A 4DXAB 1ISNA 3ZDTA 1NTIA 2CB8A 2RQ1A 3PVLA 2AEHA 1HBKA 2I1KA 1HB6A 3AU4A 4ZRIA 4ZRJA 2AL6A 1MK7B 1GC7A 2ZPYA 1GC6A 2COPA 2D2QA 3FLVA 2D11A
chains in the Genus database with same CATH superfamily
1DIKA 4JK8A 4F7GA 1JDEA 2HE7A 3EPYA 3ENBA 4JK7A 1ST7A 4P7IA 3WA0A 3BINA 3PZDA 2CQUA 1NTIA 2X0SA 4JKFA 2D2QA 3SBTA 2WH5A 2I1JA 3U8ZA 3QIJA 1NVLA 4JKGB 4JKBA 3FP5A 3IVFA 2FDQA 4JKGA 2HRJA 1VBGA 1SGHA 5JVLA 2D10A 2J0JA 4EKUA 4ZRKA 3PVLA 2AEHA 3AU4A 1HB6A 4JK9A 2AL6A 3E9PA 3SBGA 3E9LA 4TKNA 1H4RA 2FJ9A 4GXBA 4HDOA 1MIZB 4HDQA 4JKEA 3X23A 4ILJA 3E9OA 1GG3A 3U7DA 4NY0A 2J0KA 2EMTA 1ACAA 2EMSA 1J19A 4YL8A 1ISNA 4ILHA 2RQ1A 1VBHA 2I1KA 2R82A 4ZRIA 4ZRJA 1KC7A 4JKHA 1GC7A 2ZPYA 3ZDTA 2D11A 5IJMA 4JKDA 1E5WA 3E66A 1EF1A 1Y19B 4CYEA 1GGOA 1MIXA 2YVCA 1KBLA 1NI2A 4JKAA 2ABDA 2DIKA 2J0MA 4ILGB 1HB8A 3G9WA 1MK9B 2LBBA 3AU5A 4DXAB 2CB8A 1HBKA 1MK7B 4JKCA 1GC6A 2COPA 3FLVA
chains in the Genus database with same CATH topology
1DIKA 4JK8A 4F7GA 1JDEA 2HE7A 3EPYA 3ENBA 4JK7A 1ST7A 4P7IA 3WA0A 3BINA 3PZDA 2CQUA 1NTIA 2X0SA 4JKFA 2D2QA 3SBTA 2WH5A 2I1JA 3U8ZA 3QIJA 1NVLA 4JKGB 4JKBA 3FP5A 3IVFA 2FDQA 4JKGA 2HRJA 1VBGA 1SGHA 5JVLA 2D10A 2J0JA 4EKUA 4ZRKA 3PVLA 2AEHA 3AU4A 1HB6A 4JK9A 2AL6A 3E9PA 3SBGA 3E9LA 4TKNA 1H4RA 2FJ9A 4GXBA 4HDOA 1MIZB 4HDQA 4JKEA 3X23A 4ILJA 3E9OA 1GG3A 3U7DA 4NY0A 2J0KA 2EMTA 1ACAA 2EMSA 1J19A 4YL8A 1ISNA 4ILHA 2RQ1A 1VBHA 2I1KA 2R82A 4ZRIA 4ZRJA 1KC7A 4JKHA 1GC7A 2ZPYA 3ZDTA 2D11A 5IJMA 4JKDA 1E5WA 3E66A 1EF1A 1Y19B 4CYEA 1GGOA 1MIXA 2YVCA 1KBLA 1NI2A 4JKAA 2ABDA 2DIKA 2J0MA 4ILGB 1HB8A 3G9WA 1MK9B 2LBBA 3AU5A 4DXAB 2CB8A 1HBKA 1MK7B 4JKCA 1GC6A 2COPA 3FLVA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2WH5 A;  1H4R A;  5IJM A;  2FJ9 A;  1ACA A;  2I1J A;  3U8Z A;  1E5W A;  4HDO A;  1EF1 A;  1Y19 B;  1MIZ B;  3QIJ A;  4HDQ A;  1NVL A;  4EKU A;  4F7G A;  3X23 A;  4CYE A;  1MIX A;  2YVC A;  3FP5 A;  1GG3 A;  2HE7 A;  1NI2 A;  2FDQ A;  3IVF A;  3U7D A;  4NY0 A;  2ABD A;  3EPY A;  2J0K A;  1ST7 A;  2HRJ A;  2J0M A;  4P7I A;  4ZRK A;  1HB8 A;  3G9W A;  1SGH A;  2EMT A;  2D10 A;  2J0J A;  3BIN A;  3WA0 A;  1MK9 B;  2LBB A;  2EMS A;  3AU5 A;  1J19 A;  2CQU A;  3PZD A;  4YL8 A;  4DXA B;  1ISN A;  3ZDT A;  1NTI A;  2CB8 A;  2RQ1 A;  3PVL A;  2AEH A;  1HBK A;  2I1K A;  1HB6 A;  3AU4 A;  4ZRI A;  4ZRJ A;  2AL6 A;  1MK7 B;  1GC7 A;  2ZPY A;  1GC6 A;  2COP A;  2D2Q A;  3FLV A;  2D11 A; 
#chains in the Genus database with same CATH topology
 1DIK A;  4JK8 A;  4F7G A;  1JDE A;  2HE7 A;  3EPY A;  3ENB A;  4JK7 A;  1ST7 A;  4P7I A;  3WA0 A;  3BIN A;  3PZD A;  2CQU A;  1NTI A;  2X0S A;  4JKF A;  2D2Q A;  3SBT A;  2WH5 A;  2I1J A;  3U8Z A;  3QIJ A;  1NVL A;  4JKG B;  4JKB A;  3FP5 A;  3IVF A;  2FDQ A;  4JKG A;  2HRJ A;  1VBG A;  1SGH A;  5JVL A;  2D10 A;  2J0J A;  4EKU A;  4ZRK A;  3PVL A;  2AEH A;  3AU4 A;  1HB6 A;  4JK9 A;  2AL6 A;  3E9P A;  3SBG A;  3E9L A;  4TKN A;  1H4R A;  2FJ9 A;  4GXB A;  4HDO A;  1MIZ B;  4HDQ A;  4JKE A;  3X23 A;  4ILJ A;  3E9O A;  1GG3 A;  3U7D A;  4NY0 A;  2J0K A;  2EMT A;  1ACA A;  2EMS A;  1J19 A;  4YL8 A;  1ISN A;  4ILH A;  2RQ1 A;  1VBH A;  2I1K A;  2R82 A;  4ZRI A;  4ZRJ A;  1KC7 A;  4JKH A;  1GC7 A;  2ZPY A;  3ZDT A;  2D11 A;  5IJM A;  4JKD A;  1E5W A;  3E66 A;  1EF1 A;  1Y19 B;  4CYE A;  1GGO A;  1MIX A;  2YVC A;  1KBL A;  1NI2 A;  4JKA A;  2ABD A;  2DIK A;  2J0M A;  4ILG B;  1HB8 A;  3G9W A;  1MK9 B;  2LBB A;  3AU5 A;  4DXA B;  2CB8 A;  1HBK A;  1MK7 B;  4JKC A;  1GC6 A;  2COP A;  3FLV A; 
#chains in the Genus database with same CATH homology
 1DIK A;  4JK8 A;  4F7G A;  1JDE A;  2HE7 A;  3EPY A;  3ENB A;  4JK7 A;  1ST7 A;  4P7I A;  3WA0 A;  3BIN A;  3PZD A;  2CQU A;  1NTI A;  2X0S A;  4JKF A;  2D2Q A;  3SBT A;  2WH5 A;  2I1J A;  3U8Z A;  3QIJ A;  1NVL A;  4JKG B;  4JKB A;  3FP5 A;  3IVF A;  2FDQ A;  4JKG A;  2HRJ A;  1VBG A;  1SGH A;  5JVL A;  2D10 A;  2J0J A;  4EKU A;  4ZRK A;  3PVL A;  2AEH A;  3AU4 A;  1HB6 A;  4JK9 A;  2AL6 A;  3E9P A;  3SBG A;  3E9L A;  4TKN A;  1H4R A;  2FJ9 A;  4GXB A;  4HDO A;  1MIZ B;  4HDQ A;  4JKE A;  3X23 A;  4ILJ A;  3E9O A;  1GG3 A;  3U7D A;  4NY0 A;  2J0K A;  2EMT A;  1ACA A;  2EMS A;  1J19 A;  4YL8 A;  1ISN A;  4ILH A;  2RQ1 A;  1VBH A;  2I1K A;  2R82 A;  4ZRI A;  4ZRJ A;  1KC7 A;  4JKH A;  1GC7 A;  2ZPY A;  3ZDT A;  2D11 A;  5IJM A;  4JKD A;  1E5W A;  3E66 A;  1EF1 A;  1Y19 B;  4CYE A;  1GGO A;  1MIX A;  2YVC A;  1KBL A;  1NI2 A;  4JKA A;  2ABD A;  2DIK A;  2J0M A;  4ILG B;  1HB8 A;  3G9W A;  1MK9 B;  2LBB A;  3AU5 A;  4DXA B;  2CB8 A;  1HBK A;  1MK7 B;  4JKC A;  1GC6 A;  2COP A;  3FLV A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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