2RQ1A

Solution structure of the 4.1r ferm alpha lobe domain
Total Genus 31

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
31
sequence length
109
structure length
109
Chain Sequence
GSHMDPAQLTEDITRYYLCLQLRQDIVAGRLPCSFATLALLGSYTIQSELGDYDPELHGVDYVSDFKLAPNQTKELEEKVMELHKSYRSMTPAQADLEFLENAKKLSMY

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (87-106)TI1 (83-86)TIV2 (107-110)EMPTYUpdating...
connected with : NaN
molecule tags Membrane protein
source organism Homo sapiens
publication title Solution structure and glycophorin C binding studies of the protein 4.1R FERM alpha-lobe domain
pubmed doi rcsb
molecule keywords Protein 4.1
total genus 31
structure length 109
sequence length 109
ec nomenclature
pdb deposition date 2009-01-09
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.80.10 Mainly Alpha Up-down Bundle Acyl-CoA Binding Protein Acyl-CoA Binding Protein 2rq1A00
4P7IA 4DXAB 1E5WA 2FDQA 1SGHA 1MIXA 1ST7A 1NVLA 3G9WA 1ISNA 1EF1A 2RQ1A 1GC7A 2J0MA 4CYEA 3PVLA 3WA0A 1NI2A 1ACAA 2WH5A 2AL6A 2HRJA 1HB8A 2ABDA 3BINA 3PZDA 3U7DA 1MIZB 4ZRKA 1MK9B 1J19A 3IVFA 1NTIA 2CQUA 1Y19B 3AU4A 2HE7A 4ZRJA 2FJ9A 3FP5A 3AU5A 2D10A 2I1KA 4EKUA 1MK7B 4YL8A 2CB8A 4F7GA 2LBBA 1HBKA 4NY0A 2YVCA 3U8ZA 1HB6A 2J0JA 3FLVA 3QIJA 2D11A 2EMTA 3ZDTA 1H4RA 4HDQA 2COPA 4ZRIA 2D2QA 2I1JA 3X23A 2ZPYA 2J0KA 4HDOA 1GC6A 3EPYA 1GG3A 2AEHA 2EMSA 5IJMA
chains in the Genus database with same CATH superfamily
4P7IA 1E5WA 1MIXA 1NVLA 1VBGA 3E9PA 4JKCA 1J19A 4JKFA 2FJ9A 2DIKA 2I1KA 1MK7B 4F7GA 1HBKA 3U8ZA 3QIJA 2J0JA 3ZDTA 1KBLA 2EMTA 1H4RA 5JVLA 3SBGA 3EPYA 5IJMA 4DXAB 1SGHA 1ST7A 1EF1A 4GXBA 4JKAA 2R82A 2RQ1A 4JKBA 1GC7A 2J0MA 1ACAA 2AL6A 3BINA 3U7DA 4ZRKA 1MK9B 3IVFA 1NTIA 1Y19B 3FP5A 2CB8A 4NY0A 2YVCA 4JKGB 4HDQA 1JDEA 4ILJA 1GC6A 1GG3A 2AEHA 4EKUA 4CYEA 3PVLA 3SBTA 2ABDA 3PZDA 4JKHA 4JK8A 2CQUA 4ILGB 3AU4A 4ZRJA 3AU5A 4JKDA 1HB6A 2D2QA 2I1JA 3X23A 4HDOA 4JK7A 4ZRIA 3ENBA 2FDQA 3E66A 3G9WA 4JKEA 1ISNA 2X0SA 3WA0A 1NI2A 2WH5A 2HRJA 1HB8A 1MIZB 1VBHA 1GGOA 4JKGA 4ILHA 2HE7A 3E9LA 4JK9A 1KC7A 2D10A 4YL8A 2LBBA 3FLVA 2D11A 3E9OA 1DIKA 2COPA 2ZPYA 2J0KA 4TKNA 2EMSA
chains in the Genus database with same CATH topology
4P7IA 1E5WA 1MIXA 1NVLA 1VBGA 3E9PA 4JKCA 1J19A 4JKFA 2FJ9A 2DIKA 2I1KA 1MK7B 4F7GA 1HBKA 3U8ZA 3QIJA 2J0JA 3ZDTA 1KBLA 2EMTA 1H4RA 5JVLA 3SBGA 3EPYA 5IJMA 4DXAB 1SGHA 1ST7A 1EF1A 4GXBA 4JKAA 2R82A 2RQ1A 4JKBA 1GC7A 2J0MA 1ACAA 2AL6A 3BINA 3U7DA 4ZRKA 1MK9B 3IVFA 1NTIA 1Y19B 3FP5A 2CB8A 4NY0A 2YVCA 4JKGB 4HDQA 1JDEA 4ILJA 1GC6A 1GG3A 2AEHA 4EKUA 4CYEA 3PVLA 3SBTA 2ABDA 3PZDA 4JKHA 4JK8A 2CQUA 4ILGB 3AU4A 4ZRJA 3AU5A 4JKDA 1HB6A 2D2QA 2I1JA 3X23A 4HDOA 4JK7A 4ZRIA 3ENBA 2FDQA 3E66A 3G9WA 4JKEA 1ISNA 2X0SA 3WA0A 1NI2A 2WH5A 2HRJA 1HB8A 1MIZB 1VBHA 1GGOA 4JKGA 4ILHA 2HE7A 3E9LA 4JK9A 1KC7A 2D10A 4YL8A 2LBBA 3FLVA 2D11A 3E9OA 1DIKA 2COPA 2ZPYA 2J0KA 4TKNA 2EMSA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4P7I A;  4DXA B;  1E5W A;  2FDQ A;  1SGH A;  1MIX A;  1ST7 A;  1NVL A;  3G9W A;  1ISN A;  1EF1 A;  2RQ1 A;  1GC7 A;  2J0M A;  4CYE A;  3PVL A;  3WA0 A;  1NI2 A;  1ACA A;  2WH5 A;  2AL6 A;  2HRJ A;  1HB8 A;  2ABD A;  3BIN A;  3PZD A;  3U7D A;  1MIZ B;  4ZRK A;  1MK9 B;  1J19 A;  3IVF A;  1NTI A;  2CQU A;  1Y19 B;  3AU4 A;  2HE7 A;  4ZRJ A;  2FJ9 A;  3FP5 A;  3AU5 A;  2D10 A;  2I1K A;  4EKU A;  1MK7 B;  4YL8 A;  2CB8 A;  4F7G A;  2LBB A;  1HBK A;  4NY0 A;  2YVC A;  3U8Z A;  1HB6 A;  2J0J A;  3FLV A;  3QIJ A;  2D11 A;  2EMT A;  3ZDT A;  1H4R A;  4HDQ A;  2COP A;  4ZRI A;  2D2Q A;  2I1J A;  3X23 A;  2ZPY A;  2J0K A;  4HDO A;  1GC6 A;  3EPY A;  1GG3 A;  2AEH A;  2EMS A;  5IJM A; 
#chains in the Genus database with same CATH topology
 4P7I A;  1E5W A;  1MIX A;  1NVL A;  1VBG A;  3E9P A;  4JKC A;  1J19 A;  4JKF A;  2FJ9 A;  2DIK A;  2I1K A;  1MK7 B;  4F7G A;  1HBK A;  3U8Z A;  3QIJ A;  2J0J A;  3ZDT A;  1KBL A;  2EMT A;  1H4R A;  5JVL A;  3SBG A;  3EPY A;  5IJM A;  4DXA B;  1SGH A;  1ST7 A;  1EF1 A;  4GXB A;  4JKA A;  2R82 A;  2RQ1 A;  4JKB A;  1GC7 A;  2J0M A;  1ACA A;  2AL6 A;  3BIN A;  3U7D A;  4ZRK A;  1MK9 B;  3IVF A;  1NTI A;  1Y19 B;  3FP5 A;  2CB8 A;  4NY0 A;  2YVC A;  4JKG B;  4HDQ A;  1JDE A;  4ILJ A;  1GC6 A;  1GG3 A;  2AEH A;  4EKU A;  4CYE A;  3PVL A;  3SBT A;  2ABD A;  3PZD A;  4JKH A;  4JK8 A;  2CQU A;  4ILG B;  3AU4 A;  4ZRJ A;  3AU5 A;  4JKD A;  1HB6 A;  2D2Q A;  2I1J A;  3X23 A;  4HDO A;  4JK7 A;  4ZRI A;  3ENB A;  2FDQ A;  3E66 A;  3G9W A;  4JKE A;  1ISN A;  2X0S A;  3WA0 A;  1NI2 A;  2WH5 A;  2HRJ A;  1HB8 A;  1MIZ B;  1VBH A;  1GGO A;  4JKG A;  4ILH A;  2HE7 A;  3E9L A;  4JK9 A;  1KC7 A;  2D10 A;  4YL8 A;  2LBB A;  3FLV A;  2D11 A;  3E9O A;  1DIK A;  2COP A;  2ZPY A;  2J0K A;  4TKN A;  2EMS A; 
#chains in the Genus database with same CATH homology
 4P7I A;  1E5W A;  1MIX A;  1NVL A;  1VBG A;  3E9P A;  4JKC A;  1J19 A;  4JKF A;  2FJ9 A;  2DIK A;  2I1K A;  1MK7 B;  4F7G A;  1HBK A;  3U8Z A;  3QIJ A;  2J0J A;  3ZDT A;  1KBL A;  2EMT A;  1H4R A;  5JVL A;  3SBG A;  3EPY A;  5IJM A;  4DXA B;  1SGH A;  1ST7 A;  1EF1 A;  4GXB A;  4JKA A;  2R82 A;  2RQ1 A;  4JKB A;  1GC7 A;  2J0M A;  1ACA A;  2AL6 A;  3BIN A;  3U7D A;  4ZRK A;  1MK9 B;  3IVF A;  1NTI A;  1Y19 B;  3FP5 A;  2CB8 A;  4NY0 A;  2YVC A;  4JKG B;  4HDQ A;  1JDE A;  4ILJ A;  1GC6 A;  1GG3 A;  2AEH A;  4EKU A;  4CYE A;  3PVL A;  3SBT A;  2ABD A;  3PZD A;  4JKH A;  4JK8 A;  2CQU A;  4ILG B;  3AU4 A;  4ZRJ A;  3AU5 A;  4JKD A;  1HB6 A;  2D2Q A;  2I1J A;  3X23 A;  4HDO A;  4JK7 A;  4ZRI A;  3ENB A;  2FDQ A;  3E66 A;  3G9W A;  4JKE A;  1ISN A;  2X0S A;  3WA0 A;  1NI2 A;  2WH5 A;  2HRJ A;  1HB8 A;  1MIZ B;  1VBH A;  1GGO A;  4JKG A;  4ILH A;  2HE7 A;  3E9L A;  4JK9 A;  1KC7 A;  2D10 A;  4YL8 A;  2LBB A;  3FLV A;  2D11 A;  3E9O A;  1DIK A;  2COP A;  2ZPY A;  2J0K A;  4TKN A;  2EMS A; 
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similar chains in the pdb database (?% sequence similarity)

 
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