2CQUA

Solution structure of rsgi ruh-045, a human acyl-coa binding protein
Total Genus 19
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
19
sequence length
116
structure length
116
Chain Sequence
GSSGSSGMNRTAMRASQKDFENSMNQVKLLKKDPGNEVKLKLYALYKQATEGPCNMPKPGVFDLINKAKWDAWNALGSLPKEAARQNYVDLVSSLSPSLESSSQVEPGTDSGPSSG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords peroxisomal D3,D2-enoyl-CoA isomerase
publication title Solution Structure of RSGI RUH-045, a Human Acyl-CoA Binding Protein
rcsb
source organism Homo sapiens
molecule tags Isomerase
total genus 19
structure length 116
sequence length 116
ec nomenclature ec 5.3.3.8: Delta(3)-Delta(2)-enoyl-CoA isomerase.
pdb deposition date 2005-05-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00887 ACBP Acyl CoA binding protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.80.10 Mainly Alpha Up-down Bundle Acyl-CoA Binding Protein Acyl-CoA Binding Protein 2cquA00
1GC6A 4DXAB 3PVLA 1E5WA 2FDQA 1NI2A 2J0KA 3G9WA 4CYEA 1H4RA 2EMTA 1J19A 4HDOA 1MIXA 1NTIA 1NVLA 2HRJA 4EKUA 3AU5A 1ISNA 4YL8A 2D2QA 2HE7A 2D11A 3X23A 5IJMA 2CQUA 3FP5A 2YVCA 3U8ZA 4P7IA 2COPA 3ZDTA 1EF1A 3FLVA 1MIZB 3U7DA 1SGHA 3PZDA 3EPYA 2D10A 2AL6A 3WA0A 1GC7A 1HB6A 3QIJA 1MK7B 2AEHA 3IVFA 2LBBA 4HDQA 4ZRJA 2ZPYA 4ZRIA 2EMSA 4NY0A 1HB8A 2J0MA 1ST7A 2ABDA 3BINA 2J0JA 2I1KA 4ZRKA 1ACAA 2FJ9A 2RQ1A 1HBKA 2CB8A 3AU4A 4F7GA 2I1JA 1Y19B 2WH5A 1MK9B 1GG3A
chains in the Genus database with same CATH superfamily
4JKBA 4DXAB 3PVLA 1E5WA 4JKEA 2J0KA 2X0SA 4HDOA 1NTIA 1KBLA 1ISNA 3X23A 3E9LA 4GXBA 3U8ZA 4ILHA 2AL6A 3IVFA 2LBBA 2ZPYA 4ZRIA 5JVLA 2J0JA 2I1KA 1ACAA 4JKDA 2FJ9A 2RQ1A 1HBKA 2CB8A 2WH5A 1Y19B 3E9PA 4CYEA 1NI2A 2EMTA 1J19A 4EKUA 3AU5A 4YL8A 1GGOA 3FP5A 4JKGB 4P7IA 3ZDTA 4JKGA 4JK7A 1SGHA 3PZDA 3WA0A 1HB6A 3QIJA 2AEHA 2R82A 3ENBA 4NY0A 1HB8A 2J0MA 1JDEA 4ZRKA 3SBTA 1GG3A 1GC6A 4JKCA 2FDQA 3E66A 3G9WA 1H4RA 1NVLA 2HRJA 2D2QA 2HE7A 4JKFA 2YVCA 3E9OA 2COPA 1EF1A 3FLVA 3U7DA 4JKHA 1GC7A 1MK7B 4ZRJA 4HDQA 2EMSA 4ILGB 1ST7A 3BINA 4JK9A 4ILJA 4JK8A 4F7GA 2DIKA 1MK9B 4TKNA 1MIXA 2D11A 3SBGA 5IJMA 1DIKA 1VBGA 2CQUA 1MIZB 3EPYA 2D10A 1KC7A 2ABDA 4JKAA 3AU4A 2I1JA 1VBHA
chains in the Genus database with same CATH topology
4JKBA 4DXAB 3PVLA 1E5WA 4JKEA 2J0KA 2X0SA 4HDOA 1NTIA 1KBLA 1ISNA 3X23A 3E9LA 4GXBA 3U8ZA 4ILHA 2AL6A 3IVFA 2LBBA 2ZPYA 4ZRIA 5JVLA 2J0JA 2I1KA 1ACAA 4JKDA 2FJ9A 2RQ1A 1HBKA 2CB8A 2WH5A 1Y19B 3E9PA 4CYEA 1NI2A 2EMTA 1J19A 4EKUA 3AU5A 4YL8A 1GGOA 3FP5A 4JKGB 4P7IA 3ZDTA 4JKGA 4JK7A 1SGHA 3PZDA 3WA0A 1HB6A 3QIJA 2AEHA 2R82A 3ENBA 4NY0A 1HB8A 2J0MA 1JDEA 4ZRKA 3SBTA 1GG3A 1GC6A 4JKCA 2FDQA 3E66A 3G9WA 1H4RA 1NVLA 2HRJA 2D2QA 2HE7A 4JKFA 2YVCA 3E9OA 2COPA 1EF1A 3FLVA 3U7DA 4JKHA 1GC7A 1MK7B 4ZRJA 4HDQA 2EMSA 4ILGB 1ST7A 3BINA 4JK9A 4ILJA 4JK8A 4F7GA 2DIKA 1MK9B 4TKNA 1MIXA 2D11A 3SBGA 5IJMA 1DIKA 1VBGA 2CQUA 1MIZB 3EPYA 2D10A 1KC7A 2ABDA 4JKAA 3AU4A 2I1JA 1VBHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1GC6 A;  4DXA B;  3PVL A;  1E5W A;  2FDQ A;  1NI2 A;  2J0K A;  3G9W A;  4CYE A;  1H4R A;  2EMT A;  1J19 A;  4HDO A;  1MIX A;  1NTI A;  1NVL A;  2HRJ A;  4EKU A;  3AU5 A;  1ISN A;  4YL8 A;  2D2Q A;  2HE7 A;  2D11 A;  3X23 A;  5IJM A;  2CQU A;  3FP5 A;  2YVC A;  3U8Z A;  4P7I A;  2COP A;  3ZDT A;  1EF1 A;  3FLV A;  1MIZ B;  3U7D A;  1SGH A;  3PZD A;  3EPY A;  2D10 A;  2AL6 A;  3WA0 A;  1GC7 A;  1HB6 A;  3QIJ A;  1MK7 B;  2AEH A;  3IVF A;  2LBB A;  4HDQ A;  4ZRJ A;  2ZPY A;  4ZRI A;  2EMS A;  4NY0 A;  1HB8 A;  2J0M A;  1ST7 A;  2ABD A;  3BIN A;  2J0J A;  2I1K A;  4ZRK A;  1ACA A;  2FJ9 A;  2RQ1 A;  1HBK A;  2CB8 A;  3AU4 A;  4F7G A;  2I1J A;  1Y19 B;  2WH5 A;  1MK9 B;  1GG3 A; 
#chains in the Genus database with same CATH topology
 4JKB A;  4DXA B;  3PVL A;  1E5W A;  4JKE A;  2J0K A;  2X0S A;  4HDO A;  1NTI A;  1KBL A;  1ISN A;  3X23 A;  3E9L A;  4GXB A;  3U8Z A;  4ILH A;  2AL6 A;  3IVF A;  2LBB A;  2ZPY A;  4ZRI A;  5JVL A;  2J0J A;  2I1K A;  1ACA A;  4JKD A;  2FJ9 A;  2RQ1 A;  1HBK A;  2CB8 A;  2WH5 A;  1Y19 B;  3E9P A;  4CYE A;  1NI2 A;  2EMT A;  1J19 A;  4EKU A;  3AU5 A;  4YL8 A;  1GGO A;  3FP5 A;  4JKG B;  4P7I A;  3ZDT A;  4JKG A;  4JK7 A;  1SGH A;  3PZD A;  3WA0 A;  1HB6 A;  3QIJ A;  2AEH A;  2R82 A;  3ENB A;  4NY0 A;  1HB8 A;  2J0M A;  1JDE A;  4ZRK A;  3SBT A;  1GG3 A;  1GC6 A;  4JKC A;  2FDQ A;  3E66 A;  3G9W A;  1H4R A;  1NVL A;  2HRJ A;  2D2Q A;  2HE7 A;  4JKF A;  2YVC A;  3E9O A;  2COP A;  1EF1 A;  3FLV A;  3U7D A;  4JKH A;  1GC7 A;  1MK7 B;  4ZRJ A;  4HDQ A;  2EMS A;  4ILG B;  1ST7 A;  3BIN A;  4JK9 A;  4ILJ A;  4JK8 A;  4F7G A;  2DIK A;  1MK9 B;  4TKN A;  1MIX A;  2D11 A;  3SBG A;  5IJM A;  1DIK A;  1VBG A;  2CQU A;  1MIZ B;  3EPY A;  2D10 A;  1KC7 A;  2ABD A;  4JKA A;  3AU4 A;  2I1J A;  1VBH A; 
#chains in the Genus database with same CATH homology
 4JKB A;  4DXA B;  3PVL A;  1E5W A;  4JKE A;  2J0K A;  2X0S A;  4HDO A;  1NTI A;  1KBL A;  1ISN A;  3X23 A;  3E9L A;  4GXB A;  3U8Z A;  4ILH A;  2AL6 A;  3IVF A;  2LBB A;  2ZPY A;  4ZRI A;  5JVL A;  2J0J A;  2I1K A;  1ACA A;  4JKD A;  2FJ9 A;  2RQ1 A;  1HBK A;  2CB8 A;  2WH5 A;  1Y19 B;  3E9P A;  4CYE A;  1NI2 A;  2EMT A;  1J19 A;  4EKU A;  3AU5 A;  4YL8 A;  1GGO A;  3FP5 A;  4JKG B;  4P7I A;  3ZDT A;  4JKG A;  4JK7 A;  1SGH A;  3PZD A;  3WA0 A;  1HB6 A;  3QIJ A;  2AEH A;  2R82 A;  3ENB A;  4NY0 A;  1HB8 A;  2J0M A;  1JDE A;  4ZRK A;  3SBT A;  1GG3 A;  1GC6 A;  4JKC A;  2FDQ A;  3E66 A;  3G9W A;  1H4R A;  1NVL A;  2HRJ A;  2D2Q A;  2HE7 A;  4JKF A;  2YVC A;  3E9O A;  2COP A;  1EF1 A;  3FLV A;  3U7D A;  4JKH A;  1GC7 A;  1MK7 B;  4ZRJ A;  4HDQ A;  2EMS A;  4ILG B;  1ST7 A;  3BIN A;  4JK9 A;  4ILJ A;  4JK8 A;  4F7G A;  2DIK A;  1MK9 B;  4TKN A;  1MIX A;  2D11 A;  3SBG A;  5IJM A;  1DIK A;  1VBG A;  2CQU A;  1MIZ B;  3EPY A;  2D10 A;  1KC7 A;  2ABD A;  4JKA A;  3AU4 A;  2I1J A;  1VBH A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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