The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
19
|
sequence length |
116
|
structure length |
116
|
Chain Sequence |
GSSGSSGMNRTAMRASQKDFENSMNQVKLLKKDPGNEVKLKLYALYKQATEGPCNMPKPGVFDLINKAKWDAWNALGSLPKEAARQNYVDLVSSLSPSLESSSQVEPGTDSGPSSG
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Isomerase
|
| molecule keywords |
peroxisomal D3,D2-enoyl-CoA isomerase
|
| publication title |
Solution Structure of RSGI RUH-045, a Human Acyl-CoA Binding Protein
rcsb |
| source organism |
Homo sapiens
|
| total genus |
19
|
| structure length |
116
|
| sequence length |
116
|
| ec nomenclature |
ec
5.3.3.8: Delta(3)-Delta(2)-enoyl-CoA isomerase. |
| pdb deposition date | 2005-05-20 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00887 | ACBP | Acyl CoA binding protein |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Up-down Bundle | Acyl-CoA Binding Protein | Acyl-CoA Binding Protein |
#chains in the Genus database with same CATH superfamily 1GC7 A; 2FDQ A; 2HRJ A; 2J0K A; 3G9W A; 1MIZ B; 1Y19 B; 4EKU A; 1MIX A; 1J19 A; 2RQ1 A; 2WH5 A; 3PVL A; 2YVC A; 3U8Z A; 1GG3 A; 4DXA B; 3FLV A; 5IJM A; 1HB8 A; 4ZRI A; 3ZDT A; 3U7D A; 1HBK A; 3AU5 A; 2EMS A; 4YL8 A; 3X23 A; 2D11 A; 2EMT A; 2ABD A; 2COP A; 1MK7 B; 2ZPY A; 1NVL A; 2J0J A; 4HDO A; 1NTI A; 2AL6 A; 2LBB A; 4CYE A; 1MK9 B; 2CB8 A; 4P7I A; 1HB6 A; 3FP5 A; 2D10 A; 1E5W A; 3BIN A; 3PZD A; 3WA0 A; 4HDQ A; 1H4R A; 1ST7 A; 2D2Q A; 1GC6 A; 2J0M A; 3IVF A; 4ZRK A; 2FJ9 A; 4F7G A; 2AEH A; 1ISN A; 4ZRJ A; 2I1J A; 3EPY A; 1SGH A; 3QIJ A; 4NY0 A; 1ACA A; 3AU4 A; 2CQU A; 2HE7 A; 1NI2 A; 1EF1 A; 2I1K A; #chains in the Genus database with same CATH topology 4GXB A; 2X0S A; 4JK7 A; 2J0K A; 2HRJ A; 1MIZ B; 2WH5 A; 3E66 A; 3FLV A; 4JK8 A; 1HB8 A; 2DIK A; 5IJM A; 3ZDT A; 4YL8 A; 2ABD A; 4JKE A; 2AL6 A; 2LBB A; 2CB8 A; 1HB6 A; 3PZD A; 4F7G A; 2J0M A; 3EPY A; 3QIJ A; 3AU4 A; 3FP5 A; 1EF1 A; 4TKN A; 1DIK A; 2I1K A; 3X23 A; 1KC7 A; 4ILG B; 1JDE A; 3U8Z A; 4DXA B; 5JVL A; 3AU5 A; 3SBG A; 3E9L A; 4JKA A; 1NVL A; 1NTI A; 4JK9 A; 4JKC A; 1E5W A; 4HDQ A; 1GGO A; 2FJ9 A; 2I1J A; 1ACA A; 1NI2 A; 3E9O A; 4JKG B; 4ILH A; 1GC7 A; 2FDQ A; 3G9W A; 4JKB A; 1Y19 B; 3E9P A; 3SBT A; 4EKU A; 2RQ1 A; 1VBH A; 2YVC A; 1GG3 A; 4JKG A; 2R82 A; 3U7D A; 2D11 A; 4HDO A; 2J0J A; 4ILJ A; 3BIN A; 3WA0 A; 3ENB A; 4JKD A; 1ST7 A; 4ZRK A; 2AEH A; 4ZRJ A; 1SGH A; 1VBG A; 4ZRI A; 1MIX A; 1J19 A; 3PVL A; 1HBK A; 2EMS A; 2EMT A; 2COP A; 2ZPY A; 1MK7 B; 4CYE A; 1MK9 B; 4P7I A; 4JKH A; 2D10 A; 1H4R A; 2D2Q A; 1GC6 A; 3IVF A; 1ISN A; 4NY0 A; 1KBL A; 2CQU A; 2HE7 A; 4JKF A; #chains in the Genus database with same CATH homology 4GXB A; 2X0S A; 4JK7 A; 2J0K A; 2HRJ A; 1MIZ B; 2WH5 A; 3E66 A; 3FLV A; 4JK8 A; 1HB8 A; 2DIK A; 5IJM A; 3ZDT A; 4YL8 A; 2ABD A; 4JKE A; 2AL6 A; 2LBB A; 2CB8 A; 1HB6 A; 3PZD A; 4F7G A; 2J0M A; 3EPY A; 3QIJ A; 3AU4 A; 3FP5 A; 1EF1 A; 4TKN A; 1DIK A; 2I1K A; 3X23 A; 1KC7 A; 4ILG B; 1JDE A; 3U8Z A; 4DXA B; 5JVL A; 3AU5 A; 3SBG A; 3E9L A; 4JKA A; 1NVL A; 1NTI A; 4JK9 A; 4JKC A; 1E5W A; 4HDQ A; 1GGO A; 2FJ9 A; 2I1J A; 1ACA A; 1NI2 A; 3E9O A; 4JKG B; 4ILH A; 1GC7 A; 2FDQ A; 3G9W A; 4JKB A; 1Y19 B; 3E9P A; 3SBT A; 4EKU A; 2RQ1 A; 1VBH A; 2YVC A; 1GG3 A; 4JKG A; 2R82 A; 3U7D A; 2D11 A; 4HDO A; 2J0J A; 4ILJ A; 3BIN A; 3WA0 A; 3ENB A; 4JKD A; 1ST7 A; 4ZRK A; 2AEH A; 4ZRJ A; 1SGH A; 1VBG A; 4ZRI A; 1MIX A; 1J19 A; 3PVL A; 1HBK A; 2EMS A; 2EMT A; 2COP A; 2ZPY A; 1MK7 B; 4CYE A; 1MK9 B; 4P7I A; 4JKH A; 2D10 A; 1H4R A; 2D2Q A; 1GC6 A; 3IVF A; 1ISN A; 4NY0 A; 1KBL A; 2CQU A; 2HE7 A; 4JKF A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
