2CQUA

Solution structure of rsgi ruh-045, a human acyl-coa binding protein
Total Genus 19
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
19
sequence length
116
structure length
116
Chain Sequence
b'GSSGSSGMNRTAMRASQKDFENSMNQVKLLKKDPGNEVKLKLYALYKQATEGPCNMPKPGVFDLINKAKWDAWNALGSLPKEAARQNYVDLVSSLSPSLESSSQVEPGTDSGPSSG'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords peroxisomal D3,D2-enoyl-CoA isomerase
molecule tags Isomerase
source organism Homo sapiens
publication title Solution Structure of RSGI RUH-045, a Human Acyl-CoA Binding Protein
rcsb
total genus 19
structure length 116
sequence length 116
ec nomenclature ec 5.3.3.8: Delta(3)-Delta(2)-enoyl-CoA isomerase.
pdb deposition date 2005-05-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00887 ACBP Acyl CoA binding protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.80.10 Mainly Alpha Up-down Bundle Acyl-CoA Binding Protein Acyl-CoA Binding Protein 2cquA00
1MIXA 1EF1A 1MIZB 1GC7A 1E5WA 2J0KA 4ZRKA 2FDQA 2I1KA 1J19A 1HB6A 3FLVA 1SGHA 4HDOA 2D2QA 3X23A 2LBBA 4DXAB 1ACAA 2AL6A 3EPYA 2I1JA 4NY0A 4ZRIA 4CYEA 1ST7A 1Y19B 2COPA 3BINA 2RQ1A 1MK7B 1MK9B 2EMSA 2D10A 2ZPYA 4EKUA 2HRJA 1GC6A 1HB8A 2J0MA 4YL8A 2EMTA 4P7IA 2YVCA 2ABDA 4HDQA 1ISNA 4F7GA 2WH5A 2D11A 3IVFA 3PZDA 3AU5A 1NI2A 1NVLA 3AU4A 3WA0A 2CB8A 2J0JA 4ZRJA 3QIJA 2CQUA 3U8ZA 2HE7A 1H4RA 1HBKA 3PVLA 3ZDTA 3G9WA 5IJMA 3U7DA 3FP5A 1GG3A 1NTIA 2FJ9A 2AEHA
chains in the Genus database with same CATH superfamily
1EF1A 2X0SA 2J0KA 4DXAB 1ACAA 3EPYA 4NY0A 2I1JA 2RQ1A 2ZPYA 4JKFA 2J0MA 4JKDA 2EMTA 2YVCA 3SBTA 2DIKA 1NVLA 4JKEA 2CB8A 4GXBA 2HE7A 1HBKA 3PVLA 4ILHA 5IJMA 1DIKA 4JK8A 4JKAA 2I1KA 1J19A 1HB6A 3E9OA 1SGHA 4ZRIA 1Y19B 2COPA 1MK9B 4EKUA 1GC6A 4P7IA 1ISNA 3PZDA 3IVFA 2J0JA 3U8ZA 3ZDTA 3U7DA 4JKCA 2FJ9A 1JDEA 1MIZB 1GC7A 4ZRKA 3SBGA 1KBLA 3FLVA 3E9PA 4ILGB 4JK7A 4CYEA 1ST7A 3E66A 3BINA 1MK7B 4JKGB 2ABDA 4HDQA 4F7GA 3WA0A 3AU5A 4ZRJA 2CQUA 1NTIA 5JVLA 4ILJA 2R82A 3E9LA 2AL6A 2AEHA 1MIXA 1VBGA 1E5WA 4TKNA 4JKHA 2FDQA 4HDOA 3X23A 2D2QA 2LBBA 4JK9A 2EMSA 2D10A 2HRJA 1HB8A 4YL8A 2WH5A 2D11A 1VBHA 1NI2A 1GGOA 3AU4A 1KC7A 3QIJA 1H4RA 3ENBA 3G9WA 3FP5A 1GG3A 4JKBA 4JKGA
chains in the Genus database with same CATH topology
1EF1A 2X0SA 2J0KA 4DXAB 1ACAA 3EPYA 4NY0A 2I1JA 2RQ1A 2ZPYA 4JKFA 2J0MA 4JKDA 2EMTA 2YVCA 3SBTA 2DIKA 1NVLA 4JKEA 2CB8A 4GXBA 2HE7A 1HBKA 3PVLA 4ILHA 5IJMA 1DIKA 4JK8A 4JKAA 2I1KA 1J19A 1HB6A 3E9OA 1SGHA 4ZRIA 1Y19B 2COPA 1MK9B 4EKUA 1GC6A 4P7IA 1ISNA 3PZDA 3IVFA 2J0JA 3U8ZA 3ZDTA 3U7DA 4JKCA 2FJ9A 1JDEA 1MIZB 1GC7A 4ZRKA 3SBGA 1KBLA 3FLVA 3E9PA 4ILGB 4JK7A 4CYEA 1ST7A 3E66A 3BINA 1MK7B 4JKGB 2ABDA 4HDQA 4F7GA 3WA0A 3AU5A 4ZRJA 2CQUA 1NTIA 5JVLA 4ILJA 2R82A 3E9LA 2AL6A 2AEHA 1MIXA 1VBGA 1E5WA 4TKNA 4JKHA 2FDQA 4HDOA 3X23A 2D2QA 2LBBA 4JK9A 2EMSA 2D10A 2HRJA 1HB8A 4YL8A 2WH5A 2D11A 1VBHA 1NI2A 1GGOA 3AU4A 1KC7A 3QIJA 1H4RA 3ENBA 3G9WA 3FP5A 1GG3A 4JKBA 4JKGA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1MIX A;  1EF1 A;  1MIZ B;  1GC7 A;  1E5W A;  2J0K A;  4ZRK A;  2FDQ A;  2I1K A;  1J19 A;  1HB6 A;  3FLV A;  1SGH A;  4HDO A;  2D2Q A;  3X23 A;  2LBB A;  4DXA B;  1ACA A;  2AL6 A;  3EPY A;  2I1J A;  4NY0 A;  4ZRI A;  4CYE A;  1ST7 A;  1Y19 B;  2COP A;  3BIN A;  2RQ1 A;  1MK7 B;  1MK9 B;  2EMS A;  2D10 A;  2ZPY A;  4EKU A;  2HRJ A;  1GC6 A;  1HB8 A;  2J0M A;  4YL8 A;  2EMT A;  4P7I A;  2YVC A;  2ABD A;  4HDQ A;  1ISN A;  4F7G A;  2WH5 A;  2D11 A;  3IVF A;  3PZD A;  3AU5 A;  1NI2 A;  1NVL A;  3AU4 A;  3WA0 A;  2CB8 A;  2J0J A;  4ZRJ A;  3QIJ A;  2CQU A;  3U8Z A;  2HE7 A;  1H4R A;  1HBK A;  3PVL A;  3ZDT A;  3G9W A;  5IJM A;  3U7D A;  3FP5 A;  1GG3 A;  1NTI A;  2FJ9 A;  2AEH A; 
#chains in the Genus database with same CATH topology
 1EF1 A;  2X0S A;  2J0K A;  4DXA B;  1ACA A;  3EPY A;  4NY0 A;  2I1J A;  2RQ1 A;  2ZPY A;  4JKF A;  2J0M A;  4JKD A;  2EMT A;  2YVC A;  3SBT A;  2DIK A;  1NVL A;  4JKE A;  2CB8 A;  4GXB A;  2HE7 A;  1HBK A;  3PVL A;  4ILH A;  5IJM A;  1DIK A;  4JK8 A;  4JKA A;  2I1K A;  1J19 A;  1HB6 A;  3E9O A;  1SGH A;  4ZRI A;  1Y19 B;  2COP A;  1MK9 B;  4EKU A;  1GC6 A;  4P7I A;  1ISN A;  3PZD A;  3IVF A;  2J0J A;  3U8Z A;  3ZDT A;  3U7D A;  4JKC A;  2FJ9 A;  1JDE A;  1MIZ B;  1GC7 A;  4ZRK A;  3SBG A;  1KBL A;  3FLV A;  3E9P A;  4ILG B;  4JK7 A;  4CYE A;  1ST7 A;  3E66 A;  3BIN A;  1MK7 B;  4JKG B;  2ABD A;  4HDQ A;  4F7G A;  3WA0 A;  3AU5 A;  4ZRJ A;  2CQU A;  1NTI A;  5JVL A;  4ILJ A;  2R82 A;  3E9L A;  2AL6 A;  2AEH A;  1MIX A;  1VBG A;  1E5W A;  4TKN A;  4JKH A;  2FDQ A;  4HDO A;  3X23 A;  2D2Q A;  2LBB A;  4JK9 A;  2EMS A;  2D10 A;  2HRJ A;  1HB8 A;  4YL8 A;  2WH5 A;  2D11 A;  1VBH A;  1NI2 A;  1GGO A;  3AU4 A;  1KC7 A;  3QIJ A;  1H4R A;  3ENB A;  3G9W A;  3FP5 A;  1GG3 A;  4JKB A;  4JKG A; 
#chains in the Genus database with same CATH homology
 1EF1 A;  2X0S A;  2J0K A;  4DXA B;  1ACA A;  3EPY A;  4NY0 A;  2I1J A;  2RQ1 A;  2ZPY A;  4JKF A;  2J0M A;  4JKD A;  2EMT A;  2YVC A;  3SBT A;  2DIK A;  1NVL A;  4JKE A;  2CB8 A;  4GXB A;  2HE7 A;  1HBK A;  3PVL A;  4ILH A;  5IJM A;  1DIK A;  4JK8 A;  4JKA A;  2I1K A;  1J19 A;  1HB6 A;  3E9O A;  1SGH A;  4ZRI A;  1Y19 B;  2COP A;  1MK9 B;  4EKU A;  1GC6 A;  4P7I A;  1ISN A;  3PZD A;  3IVF A;  2J0J A;  3U8Z A;  3ZDT A;  3U7D A;  4JKC A;  2FJ9 A;  1JDE A;  1MIZ B;  1GC7 A;  4ZRK A;  3SBG A;  1KBL A;  3FLV A;  3E9P A;  4ILG B;  4JK7 A;  4CYE A;  1ST7 A;  3E66 A;  3BIN A;  1MK7 B;  4JKG B;  2ABD A;  4HDQ A;  4F7G A;  3WA0 A;  3AU5 A;  4ZRJ A;  2CQU A;  1NTI A;  5JVL A;  4ILJ A;  2R82 A;  3E9L A;  2AL6 A;  2AEH A;  1MIX A;  1VBG A;  1E5W A;  4TKN A;  4JKH A;  2FDQ A;  4HDO A;  3X23 A;  2D2Q A;  2LBB A;  4JK9 A;  2EMS A;  2D10 A;  2HRJ A;  1HB8 A;  4YL8 A;  2WH5 A;  2D11 A;  1VBH A;  1NI2 A;  1GGO A;  3AU4 A;  1KC7 A;  3QIJ A;  1H4R A;  3ENB A;  3G9W A;  3FP5 A;  1GG3 A;  4JKB A;  4JKG A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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