2CQUA

Solution structure of rsgi ruh-045, a human acyl-coa binding protein
Total Genus 19
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
19
sequence length
116
structure length
116
Chain Sequence
GSSGSSGMNRTAMRASQKDFENSMNQVKLLKKDPGNEVKLKLYALYKQATEGPCNMPKPGVFDLINKAKWDAWNALGSLPKEAARQNYVDLVSSLSPSLESSSQVEPGTDSGPSSG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Solution Structure of RSGI RUH-045, a Human Acyl-CoA Binding Protein
rcsb
source organism Homo sapiens
molecule tags Isomerase
molecule keywords peroxisomal D3,D2-enoyl-CoA isomerase
total genus 19
structure length 116
sequence length 116
ec nomenclature ec 5.3.3.8: Delta(3)-Delta(2)-enoyl-CoA isomerase.
pdb deposition date 2005-05-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00887 ACBP Acyl CoA binding protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.80.10 Mainly Alpha Up-down Bundle Acyl-CoA Binding Protein Acyl-CoA Binding Protein 2cquA00
3WA0A 4YL8A 1J19A 3X23A 2D2QA 2RQ1A 1H4RA 4HDQA 1Y19B 1HB8A 2EMSA 2J0JA 3G9WA 3U8ZA 1NTIA 4EKUA 3QIJA 5IJMA 1ACAA 1GG3A 4HDOA 2CQUA 4P7IA 4ZRIA 2D11A 4F7GA 1MK7B 3BINA 1NVLA 2HE7A 2FDQA 1ST7A 2CB8A 3AU4A 1ISNA 2EMTA 1GC6A 2FJ9A 2LBBA 2AL6A 3EPYA 4ZRKA 3ZDTA 4DXAB 2J0MA 2WH5A 3U7DA 4NY0A 2I1JA 2HRJA 3PZDA 2J0KA 1HB6A 3FLVA 2I1KA 1SGHA 2ZPYA 1EF1A 3IVFA 2ABDA 1MK9B 2D10A 2YVCA 2AEHA 1GC7A 3FP5A 4ZRJA 1MIXA 4CYEA 2COPA 3PVLA 1MIZB 1E5WA 1NI2A 3AU5A 1HBKA
chains in the Genus database with same CATH superfamily
2DIKA 4HDQA 1Y19B 1NTIA 3QIJA 1ACAA 1GG3A 1DIKA 4P7IA 3EPYA 2LBBA 4ZRKA 4JKAA 2J0MA 4ILHA 3PZDA 1HB6A 3E9LA 2I1KA 3SBGA 1MIXA 4CYEA 1KC7A 4JK8A 1J19A 2D2QA 2RQ1A 1H4RA 1KBLA 3E66A 2J0JA 4HDOA 1MK7B 3BINA 2CB8A 1ISNA 1GC6A 2FJ9A 4DXAB 2AL6A 4NY0A 2HRJA 2ZPYA 1VBHA 2ABDA 4ZRJA 3AU5A 3WA0A 4JKHA 4JKFA 3G9WA 3U8ZA 5IJMA 2R82A 2CQUA 1JDEA 4ZRIA 1NVLA 2HE7A 2X0SA 3AU4A 4JKGB 2EMTA 3SBTA 2I1JA 2J0KA 1SGHA 3ENBA 3IVFA 2D10A 2YVCA 2AEHA 1GC7A 3FP5A 4JKGA 4ILGB 3PVLA 1MIZB 1NI2A 4YL8A 3X23A 4ILJA 1VBGA 5JVLA 4JKEA 1HB8A 4TKNA 2EMSA 4EKUA 4GXBA 2D11A 4JKDA 4F7GA 2FDQA 1ST7A 3ZDTA 1GGOA 3E9PA 4JKBA 3U7DA 3E9OA 3FLVA 4JK9A 1EF1A 1MK9B 4JK7A 2COPA 1E5WA 2WH5A 4JKCA 1HBKA
chains in the Genus database with same CATH topology
2DIKA 4HDQA 1Y19B 1NTIA 3QIJA 1ACAA 1GG3A 1DIKA 4P7IA 3EPYA 2LBBA 4ZRKA 4JKAA 2J0MA 4ILHA 3PZDA 1HB6A 3E9LA 2I1KA 3SBGA 1MIXA 4CYEA 1KC7A 4JK8A 1J19A 2D2QA 2RQ1A 1H4RA 1KBLA 3E66A 2J0JA 4HDOA 1MK7B 3BINA 2CB8A 1ISNA 1GC6A 2FJ9A 4DXAB 2AL6A 4NY0A 2HRJA 2ZPYA 1VBHA 2ABDA 4ZRJA 3AU5A 3WA0A 4JKHA 4JKFA 3G9WA 3U8ZA 5IJMA 2R82A 2CQUA 1JDEA 4ZRIA 1NVLA 2HE7A 2X0SA 3AU4A 4JKGB 2EMTA 3SBTA 2I1JA 2J0KA 1SGHA 3ENBA 3IVFA 2D10A 2YVCA 2AEHA 1GC7A 3FP5A 4JKGA 4ILGB 3PVLA 1MIZB 1NI2A 4YL8A 3X23A 4ILJA 1VBGA 5JVLA 4JKEA 1HB8A 4TKNA 2EMSA 4EKUA 4GXBA 2D11A 4JKDA 4F7GA 2FDQA 1ST7A 3ZDTA 1GGOA 3E9PA 4JKBA 3U7DA 3E9OA 3FLVA 4JK9A 1EF1A 1MK9B 4JK7A 2COPA 1E5WA 2WH5A 4JKCA 1HBKA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3WA0 A;  4YL8 A;  1J19 A;  3X23 A;  2D2Q A;  2RQ1 A;  1H4R A;  4HDQ A;  1Y19 B;  1HB8 A;  2EMS A;  2J0J A;  3G9W A;  3U8Z A;  1NTI A;  4EKU A;  3QIJ A;  5IJM A;  1ACA A;  1GG3 A;  4HDO A;  2CQU A;  4P7I A;  4ZRI A;  2D11 A;  4F7G A;  1MK7 B;  3BIN A;  1NVL A;  2HE7 A;  2FDQ A;  1ST7 A;  2CB8 A;  3AU4 A;  1ISN A;  2EMT A;  1GC6 A;  2FJ9 A;  2LBB A;  2AL6 A;  3EPY A;  4ZRK A;  3ZDT A;  4DXA B;  2J0M A;  2WH5 A;  3U7D A;  4NY0 A;  2I1J A;  2HRJ A;  3PZD A;  2J0K A;  1HB6 A;  3FLV A;  2I1K A;  1SGH A;  2ZPY A;  1EF1 A;  3IVF A;  2ABD A;  1MK9 B;  2D10 A;  2YVC A;  2AEH A;  1GC7 A;  3FP5 A;  4ZRJ A;  1MIX A;  4CYE A;  2COP A;  3PVL A;  1MIZ B;  1E5W A;  1NI2 A;  3AU5 A;  1HBK A; 
#chains in the Genus database with same CATH topology
 2DIK A;  4HDQ A;  1Y19 B;  1NTI A;  3QIJ A;  1ACA A;  1GG3 A;  1DIK A;  4P7I A;  3EPY A;  2LBB A;  4ZRK A;  4JKA A;  2J0M A;  4ILH A;  3PZD A;  1HB6 A;  3E9L A;  2I1K A;  3SBG A;  1MIX A;  4CYE A;  1KC7 A;  4JK8 A;  1J19 A;  2D2Q A;  2RQ1 A;  1H4R A;  1KBL A;  3E66 A;  2J0J A;  4HDO A;  1MK7 B;  3BIN A;  2CB8 A;  1ISN A;  1GC6 A;  2FJ9 A;  4DXA B;  2AL6 A;  4NY0 A;  2HRJ A;  2ZPY A;  1VBH A;  2ABD A;  4ZRJ A;  3AU5 A;  3WA0 A;  4JKH A;  4JKF A;  3G9W A;  3U8Z A;  5IJM A;  2R82 A;  2CQU A;  1JDE A;  4ZRI A;  1NVL A;  2HE7 A;  2X0S A;  3AU4 A;  4JKG B;  2EMT A;  3SBT A;  2I1J A;  2J0K A;  1SGH A;  3ENB A;  3IVF A;  2D10 A;  2YVC A;  2AEH A;  1GC7 A;  3FP5 A;  4JKG A;  4ILG B;  3PVL A;  1MIZ B;  1NI2 A;  4YL8 A;  3X23 A;  4ILJ A;  1VBG A;  5JVL A;  4JKE A;  1HB8 A;  4TKN A;  2EMS A;  4EKU A;  4GXB A;  2D11 A;  4JKD A;  4F7G A;  2FDQ A;  1ST7 A;  3ZDT A;  1GGO A;  3E9P A;  4JKB A;  3U7D A;  3E9O A;  3FLV A;  4JK9 A;  1EF1 A;  1MK9 B;  4JK7 A;  2COP A;  1E5W A;  2WH5 A;  4JKC A;  1HBK A; 
#chains in the Genus database with same CATH homology
 2DIK A;  4HDQ A;  1Y19 B;  1NTI A;  3QIJ A;  1ACA A;  1GG3 A;  1DIK A;  4P7I A;  3EPY A;  2LBB A;  4ZRK A;  4JKA A;  2J0M A;  4ILH A;  3PZD A;  1HB6 A;  3E9L A;  2I1K A;  3SBG A;  1MIX A;  4CYE A;  1KC7 A;  4JK8 A;  1J19 A;  2D2Q A;  2RQ1 A;  1H4R A;  1KBL A;  3E66 A;  2J0J A;  4HDO A;  1MK7 B;  3BIN A;  2CB8 A;  1ISN A;  1GC6 A;  2FJ9 A;  4DXA B;  2AL6 A;  4NY0 A;  2HRJ A;  2ZPY A;  1VBH A;  2ABD A;  4ZRJ A;  3AU5 A;  3WA0 A;  4JKH A;  4JKF A;  3G9W A;  3U8Z A;  5IJM A;  2R82 A;  2CQU A;  1JDE A;  4ZRI A;  1NVL A;  2HE7 A;  2X0S A;  3AU4 A;  4JKG B;  2EMT A;  3SBT A;  2I1J A;  2J0K A;  1SGH A;  3ENB A;  3IVF A;  2D10 A;  2YVC A;  2AEH A;  1GC7 A;  3FP5 A;  4JKG A;  4ILG B;  3PVL A;  1MIZ B;  1NI2 A;  4YL8 A;  3X23 A;  4ILJ A;  1VBG A;  5JVL A;  4JKE A;  1HB8 A;  4TKN A;  2EMS A;  4EKU A;  4GXB A;  2D11 A;  4JKD A;  4F7G A;  2FDQ A;  1ST7 A;  3ZDT A;  1GGO A;  3E9P A;  4JKB A;  3U7D A;  3E9O A;  3FLV A;  4JK9 A;  1EF1 A;  1MK9 B;  4JK7 A;  2COP A;  1E5W A;  2WH5 A;  4JKC A;  1HBK A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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