1HB8 | Genus

Total Genus 35

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	35
sequence length	86
structure length	86
Chain Sequence	SQAEFDKAAEEVKHLKTKPADEEMLFIYSHYKQATVGDINTERPGMLDFKGKAKWDAWNELKGTSKEDAMKAYIDKVEELKKKYGI

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 86 atoms

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86 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Acyl-coenzyme a binding protein
publication title	Binding Site Differences Revealed by Crystal Structures of Plasmodium Falciparum and Bovine Acyl-Coa Binding Protein pubmed doi rcsb
molecule keywords	ACYL-COA BINDING PROTEIN
total genus	35
structure length	86
sequence length	86
chains with identical sequence	B, C
ec nomenclature
pdb deposition date	2001-04-12

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00887	ACBP	Acyl CoA binding protein

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.20.80.10	Mainly Alpha	Up-down Bundle	Acyl-CoA Binding Protein	Acyl-CoA Binding Protein	1hb8A00

3EPYA 3PZDA 2D11A 3FP5A 1GC7A 2ABDA 2I1JA 2YVCA 2FDQA 3X23A 1SGHA 2RQ1A 4CYEA 4NY0A 1EF1A 2FJ9A 4ZRKA 4YL8A 1NTIA 3BINA 4HDOA 4EKUA 2EMSA 1J19A 1NVLA 2CQUA 3AU4A 3U8ZA 3ZDTA 2J0KA 1MK7B 4ZRJA 3IVFA 3U7DA 1ISNA 2J0JA 3WA0A 1MK9B 4ZRIA 2CB8A 3G9WA 3QIJA 1E5WA 2AL6A 1NI2A 2EMTA 2WH5A 4F7GA 2AEHA 2HRJA 2I1KA 4P7IA 1ACAA 4DXAB 1ST7A 2D10A 1H4RA 2ZPYA 3FLVA 5IJMA 1Y19B 1HB8A 2D2QA 1HB6A 2LBBA 3AU5A 1HBKA 3PVLA 1GC6A 2HE7A 4HDQA 1MIXA 2COPA 1GG3A 2J0MA 1MIZB
chains in the Genus database with same CATH superfamily

3PZDA 2D11A 2ABDA 3E66A 2RQ1A 1EF1A 3BINA 4EKUA 2DIKA 4JK9A 4ZRIA 1VBGA 1E5WA 2AL6A 1NI2A 4GXBA 4JKCA 2X0SA 4P7IA 1ACAA 5IJMA 4JKGB 1HB8A 2D2QA 2LBBA 3SBTA 1HBKA 3PVLA 1GC6A 2HE7A 1MIXA 1GC7A 2YVCA 1KBLA 4JKHA 2CQUA 3AU4A 3U8ZA 3ZDTA 4ILHA 2J0JA 1MK9B 3QIJA 2WH5A 2D10A 1H4RA 3ENBA 3AU5A 4JKBA 4ILGB 4ILJA 1GG3A 3FP5A 4JK8A 2R82A 2FDQA 3E9PA 2FJ9A 4YL8A 1JDEA 4JK7A 4HDOA 1J19A 4JKDA 1VBHA 2J0KA 1MK7B 3IVFA 3E9OA 3E9LA 4F7GA 4JKGA 2HRJA 1KC7A 1ST7A 2ZPYA 3FLVA 4JKFA 2AEHA 2J0MA 1MIZB 3SBGA 3EPYA 2I1JA 4TKNA 3X23A 1SGHA 4CYEA 4JKAA 4NY0A 4JKEA 4ZRKA 1NTIA 2EMSA 1NVLA 4ZRJA 3U7DA 5JVLA 1ISNA 3WA0A 2CB8A 2EMTA 2I1KA 4DXAB 1Y19B 1GGOA 1HB6A 4HDQA 1DIKA 2COPA 3G9WA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 3EPY A;  3PZD A;  2D11 A;  3FP5 A;  1GC7 A;  2ABD A;  2I1J A;  2YVC A;  2FDQ A;  3X23 A;  1SGH A;  2RQ1 A;  4CYE A;  4NY0 A;  1EF1 A;  2FJ9 A;  4ZRK A;  4YL8 A;  1NTI A;  3BIN A;  4HDO A;  4EKU A;  2EMS A;  1J19 A;  1NVL A;  2CQU A;  3AU4 A;  3U8Z A;  3ZDT A;  2J0K A;  1MK7 B;  4ZRJ A;  3IVF A;  3U7D A;  1ISN A;  2J0J A;  3WA0 A;  1MK9 B;  4ZRI A;  2CB8 A;  3G9W A;  3QIJ A;  1E5W A;  2AL6 A;  1NI2 A;  2EMT A;  2WH5 A;  4F7G A;  2AEH A;  2HRJ A;  2I1K A;  4P7I A;  1ACA A;  4DXA B;  1ST7 A;  2D10 A;  1H4R A;  2ZPY A;  3FLV A;  5IJM A;  1Y19 B;  1HB8 A;  2D2Q A;  1HB6 A;  2LBB A;  3AU5 A;  1HBK A;  3PVL A;  1GC6 A;  2HE7 A;  4HDQ A;  1MIX A;  2COP A;  1GG3 A;  2J0M A;  1MIZ B; 
#chains in the Genus database with same CATH topology
 3PZD A;  2D11 A;  2ABD A;  3E66 A;  2RQ1 A;  1EF1 A;  3BIN A;  4EKU A;  2DIK A;  4JK9 A;  4ZRI A;  1VBG A;  1E5W A;  2AL6 A;  1NI2 A;  4GXB A;  4JKC A;  2X0S A;  4P7I A;  1ACA A;  5IJM A;  4JKG B;  1HB8 A;  2D2Q A;  2LBB A;  3SBT A;  1HBK A;  3PVL A;  1GC6 A;  2HE7 A;  1MIX A;  1GC7 A;  2YVC A;  1KBL A;  4JKH A;  2CQU A;  3AU4 A;  3U8Z A;  3ZDT A;  4ILH A;  2J0J A;  1MK9 B;  3QIJ A;  2WH5 A;  2D10 A;  1H4R A;  3ENB A;  3AU5 A;  4JKB A;  4ILG B;  4ILJ A;  1GG3 A;  3FP5 A;  4JK8 A;  2R82 A;  2FDQ A;  3E9P A;  2FJ9 A;  4YL8 A;  1JDE A;  4JK7 A;  4HDO A;  1J19 A;  4JKD A;  1VBH A;  2J0K A;  1MK7 B;  3IVF A;  3E9O A;  3E9L A;  4F7G A;  4JKG A;  2HRJ A;  1KC7 A;  1ST7 A;  2ZPY A;  3FLV A;  4JKF A;  2AEH A;  2J0M A;  1MIZ B;  3SBG A;  3EPY A;  2I1J A;  4TKN A;  3X23 A;  1SGH A;  4CYE A;  4JKA A;  4NY0 A;  4JKE A;  4ZRK A;  1NTI A;  2EMS A;  1NVL A;  4ZRJ A;  3U7D A;  5JVL A;  1ISN A;  3WA0 A;  2CB8 A;  2EMT A;  2I1K A;  4DXA B;  1Y19 B;  1GGO A;  1HB6 A;  4HDQ A;  1DIK A;  2COP A;  3G9W A; 
#chains in the Genus database with same CATH homology
 3PZD A;  2D11 A;  2ABD A;  3E66 A;  2RQ1 A;  1EF1 A;  3BIN A;  4EKU A;  2DIK A;  4JK9 A;  4ZRI A;  1VBG A;  1E5W A;  2AL6 A;  1NI2 A;  4GXB A;  4JKC A;  2X0S A;  4P7I A;  1ACA A;  5IJM A;  4JKG B;  1HB8 A;  2D2Q A;  2LBB A;  3SBT A;  1HBK A;  3PVL A;  1GC6 A;  2HE7 A;  1MIX A;  1GC7 A;  2YVC A;  1KBL A;  4JKH A;  2CQU A;  3AU4 A;  3U8Z A;  3ZDT A;  4ILH A;  2J0J A;  1MK9 B;  3QIJ A;  2WH5 A;  2D10 A;  1H4R A;  3ENB A;  3AU5 A;  4JKB A;  4ILG B;  4ILJ A;  1GG3 A;  3FP5 A;  4JK8 A;  2R82 A;  2FDQ A;  3E9P A;  2FJ9 A;  4YL8 A;  1JDE A;  4JK7 A;  4HDO A;  1J19 A;  4JKD A;  1VBH A;  2J0K A;  1MK7 B;  3IVF A;  3E9O A;  3E9L A;  4F7G A;  4JKG A;  2HRJ A;  1KC7 A;  1ST7 A;  2ZPY A;  3FLV A;  4JKF A;  2AEH A;  2J0M A;  1MIZ B;  3SBG A;  3EPY A;  2I1J A;  4TKN A;  3X23 A;  1SGH A;  4CYE A;  4JKA A;  4NY0 A;  4JKE A;  4ZRK A;  1NTI A;  2EMS A;  1NVL A;  4ZRJ A;  3U7D A;  5JVL A;  1ISN A;  3WA0 A;  2CB8 A;  2EMT A;  2I1K A;  4DXA B;  1Y19 B;  1GGO A;  1HB6 A;  4HDQ A;  1DIK A;  2COP A;  3G9W A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1HB8A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations