1HBK | Genus

Total Genus 33

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	33
sequence length	89
structure length	89
Chain Sequence	HMAQVFEECVSFINGLPRTINLPNELKLDLYKYYKQSTIGNCNIKEPSAHKYIDRKKYEAWKSVENLNREDAQKRYVDIVSEIFPYWQD

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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Time for openFile(/file/5cfb4e2301f6a4b23ac965a1/pdb.gz): 1695 ms

reading 89 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Jmol

89 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Time for creating model: 17 ms

Adding embedded #jmolscript: select ({0:88});backbone only;select *;

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Fatty acid metabolism
source organism	Plasmodium falciparum
publication title	Binding site differences revealed by crystal structures of Plasmodium falciparum and bovine acyl-CoA binding protein. pubmed doi rcsb
molecule keywords	ACYL-COA BINDING PROTEIN
total genus	33
structure length	89
sequence length	89
ec nomenclature
pdb deposition date	2001-04-16

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00887	ACBP	Acyl CoA binding protein

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.20.80.10	Mainly Alpha	Up-down Bundle	Acyl-CoA Binding Protein	Acyl-CoA Binding Protein	1hbkA00

3AU5A 2AEHA 4ZRJA 3U7DA 4YL8A 4F7GA 2CQUA 3X23A 2FJ9A 3FP5A 4EKUA 4HDOA 2D10A 2HRJA 2I1JA 2CB8A 1HB8A 1MIZB 2ABDA 1ST7A 1EF1A 4P7IA 1E5WA 3G9WA 2D2QA 1GC7A 3BINA 4NY0A 4ZRIA 1ISNA 2AL6A 3ZDTA 2EMTA 3PVLA 1NI2A 2FDQA 2J0MA 2J0KA 3U8ZA 3QIJA 4HDQA 2COPA 1MK9B 1NTIA 1MIXA 2YVCA 2ZPYA 1Y19B 4CYEA 1HBKA 1NVLA 2D11A 3FLVA 1H4RA 2EMSA 2WH5A 2J0JA 2LBBA 3AU4A 3WA0A 5IJMA 4ZRKA 1ACAA 3PZDA 1GC6A 2I1KA 2HE7A 3IVFA 1HB6A 3EPYA 1J19A 4DXAB 1SGHA 2RQ1A 1GG3A 1MK7B
chains in the Genus database with same CATH superfamily

3AU5A 4ZRJA 3FP5A 4EKUA 4HDOA 2CB8A 1HB8A 1KBLA 2ABDA 4JKCA 4JKEA 2J0MA 3E9OA 3QIJA 2X0SA 2D11A 1NVLA 1H4RA 2EMSA 2J0JA 2LBBA 3WA0A 4JKBA 2I1KA 2HE7A 4JKHA 2CQUA 1DIKA 3E9LA 2I1JA 4JKAA 4JKGA 3G9WA 3BINA 4JKFA 2AL6A 3PVLA 2FDQA 2J0KA 4F7GA 2ZPYA 1MIXA 3AU4A 4TKNA 4ZRKA 3IVFA 4DXAB 3PZDA 1GG3A 1MK7B 1VBHA 1KC7A 2AEHA 3U7DA 4YL8A 2D10A 4ILGB 2HRJA 3E66A 1MIZB 3SBTA 2R82A 1GGOA 4P7IA 1E5WA 4JK7A 3SBGA 4ZRIA 1NI2A 4JK9A 3E9PA 4HDQA 2YVCA 1JDEA 1HBKA 4ILHA 3FLVA 2WH5A 4JKGB 1ACAA 1GC6A 1HB6A 1J19A 2RQ1A 2DIKA 3X23A 4ILJA 2FJ9A 4JKDA 4JK8A 1VBGA 1ST7A 1EF1A 2D2QA 1GC7A 4NY0A 1ISNA 3ZDTA 2EMTA 3U8ZA 2COPA 1MK9B 1NTIA 4CYEA 1Y19B 4GXBA 5IJMA 3ENBA 3EPYA 5JVLA 1SGHA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 3AU5 A;  2AEH A;  4ZRJ A;  3U7D A;  4YL8 A;  4F7G A;  2CQU A;  3X23 A;  2FJ9 A;  3FP5 A;  4EKU A;  4HDO A;  2D10 A;  2HRJ A;  2I1J A;  2CB8 A;  1HB8 A;  1MIZ B;  2ABD A;  1ST7 A;  1EF1 A;  4P7I A;  1E5W A;  3G9W A;  2D2Q A;  1GC7 A;  3BIN A;  4NY0 A;  4ZRI A;  1ISN A;  2AL6 A;  3ZDT A;  2EMT A;  3PVL A;  1NI2 A;  2FDQ A;  2J0M A;  2J0K A;  3U8Z A;  3QIJ A;  4HDQ A;  2COP A;  1MK9 B;  1NTI A;  1MIX A;  2YVC A;  2ZPY A;  1Y19 B;  4CYE A;  1HBK A;  1NVL A;  2D11 A;  3FLV A;  1H4R A;  2EMS A;  2WH5 A;  2J0J A;  2LBB A;  3AU4 A;  3WA0 A;  5IJM A;  4ZRK A;  1ACA A;  3PZD A;  1GC6 A;  2I1K A;  2HE7 A;  3IVF A;  1HB6 A;  3EPY A;  1J19 A;  4DXA B;  1SGH A;  2RQ1 A;  1GG3 A;  1MK7 B; 
#chains in the Genus database with same CATH topology
 3AU5 A;  4ZRJ A;  3FP5 A;  4EKU A;  4HDO A;  2CB8 A;  1HB8 A;  1KBL A;  2ABD A;  4JKC A;  4JKE A;  2J0M A;  3E9O A;  3QIJ A;  2X0S A;  2D11 A;  1NVL A;  1H4R A;  2EMS A;  2J0J A;  2LBB A;  3WA0 A;  4JKB A;  2I1K A;  2HE7 A;  4JKH A;  2CQU A;  1DIK A;  3E9L A;  2I1J A;  4JKA A;  4JKG A;  3G9W A;  3BIN A;  4JKF A;  2AL6 A;  3PVL A;  2FDQ A;  2J0K A;  4F7G A;  2ZPY A;  1MIX A;  3AU4 A;  4TKN A;  4ZRK A;  3IVF A;  4DXA B;  3PZD A;  1GG3 A;  1MK7 B;  1VBH A;  1KC7 A;  2AEH A;  3U7D A;  4YL8 A;  2D10 A;  4ILG B;  2HRJ A;  3E66 A;  1MIZ B;  3SBT A;  2R82 A;  1GGO A;  4P7I A;  1E5W A;  4JK7 A;  3SBG A;  4ZRI A;  1NI2 A;  4JK9 A;  3E9P A;  4HDQ A;  2YVC A;  1JDE A;  1HBK A;  4ILH A;  3FLV A;  2WH5 A;  4JKG B;  1ACA A;  1GC6 A;  1HB6 A;  1J19 A;  2RQ1 A;  2DIK A;  3X23 A;  4ILJ A;  2FJ9 A;  4JKD A;  4JK8 A;  1VBG A;  1ST7 A;  1EF1 A;  2D2Q A;  1GC7 A;  4NY0 A;  1ISN A;  3ZDT A;  2EMT A;  3U8Z A;  2COP A;  1MK9 B;  1NTI A;  4CYE A;  1Y19 B;  4GXB A;  5IJM A;  3ENB A;  3EPY A;  5JVL A;  1SGH A; 
#chains in the Genus database with same CATH homology
 3AU5 A;  4ZRJ A;  3FP5 A;  4EKU A;  4HDO A;  2CB8 A;  1HB8 A;  1KBL A;  2ABD A;  4JKC A;  4JKE A;  2J0M A;  3E9O A;  3QIJ A;  2X0S A;  2D11 A;  1NVL A;  1H4R A;  2EMS A;  2J0J A;  2LBB A;  3WA0 A;  4JKB A;  2I1K A;  2HE7 A;  4JKH A;  2CQU A;  1DIK A;  3E9L A;  2I1J A;  4JKA A;  4JKG A;  3G9W A;  3BIN A;  4JKF A;  2AL6 A;  3PVL A;  2FDQ A;  2J0K A;  4F7G A;  2ZPY A;  1MIX A;  3AU4 A;  4TKN A;  4ZRK A;  3IVF A;  4DXA B;  3PZD A;  1GG3 A;  1MK7 B;  1VBH A;  1KC7 A;  2AEH A;  3U7D A;  4YL8 A;  2D10 A;  4ILG B;  2HRJ A;  3E66 A;  1MIZ B;  3SBT A;  2R82 A;  1GGO A;  4P7I A;  1E5W A;  4JK7 A;  3SBG A;  4ZRI A;  1NI2 A;  4JK9 A;  3E9P A;  4HDQ A;  2YVC A;  1JDE A;  1HBK A;  4ILH A;  3FLV A;  2WH5 A;  4JKG B;  1ACA A;  1GC6 A;  1HB6 A;  1J19 A;  2RQ1 A;  2DIK A;  3X23 A;  4ILJ A;  2FJ9 A;  4JKD A;  4JK8 A;  1VBG A;  1ST7 A;  1EF1 A;  2D2Q A;  1GC7 A;  4NY0 A;  1ISN A;  3ZDT A;  2EMT A;  3U8Z A;  2COP A;  1MK9 B;  1NTI A;  4CYE A;  1Y19 B;  4GXB A;  5IJM A;  3ENB A;  3EPY A;  5JVL A;  1SGH A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1HBKA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations