1NVL | Genus

Total Genus 31

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	31
sequence length	86
structure length	86
Chain Sequence	SQAEFDKAAEEVKHLKTKPADEEMLFIYSHYKQATVGDINTERPGMLDFKGKAKWDAWNELKGTSKEDAMKAYIDKVEELKKKYGI

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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reading 86 atoms

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86 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Ligand binding protein
source organism	Bos taurus
publication title	RDC-refined NMR structure of bovine Acyl-coenzyme A Binding Protein, ACBP, in complex with palmitoyl-coenzyme A rcsb
molecule keywords	Acyl-CoA-binding protein
total genus	31
structure length	86
sequence length	86
ec nomenclature
pdb deposition date	2003-02-04

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00887	ACBP	Acyl CoA binding protein

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.20.80.10	Mainly Alpha	Up-down Bundle	Acyl-CoA Binding Protein	Acyl-CoA Binding Protein	1nvlA00

3EPYA 2J0KA 3PVLA 2I1KA 2HE7A 1J19A 2COPA 4DXAB 4F7GA 2RQ1A 1EF1A 3AU5A 3BINA 1MK9B 1HB6A 2FDQA 4CYEA 4ZRJA 1MK7B 2D11A 2D2QA 4ZRKA 3WA0A 2ZPYA 1SGHA 3G9WA 4HDOA 1MIZB 1NTIA 2AL6A 2CQUA 2EMSA 2J0JA 3FLVA 1NVLA 3FP5A 3X23A 4ZRIA 1NI2A 2AEHA 2HRJA 3PZDA 5IJMA 2FJ9A 4NY0A 1ST7A 1GC6A 1Y19B 1MIXA 1ACAA 3U8ZA 1GG3A 2ABDA 2LBBA 4HDQA 1ISNA 2WH5A 1H4RA 3AU4A 4P7IA 3IVFA 4EKUA 2J0MA 4YL8A 1HB8A 3QIJA 1E5WA 1HBKA 2I1JA 2EMTA 2D10A 1GC7A 2YVCA 3ZDTA 2CB8A 3U7DA
chains in the Genus database with same CATH superfamily

1J19A 2COPA 4JKBA 3E66A 4DXAB 1KBLA 3BINA 1HB6A 4GXBA 3ENBA 2EMSA 2AEHA 3PZDA 4TKNA 4NY0A 1GC6A 2ABDA 4JKEA 2LBBA 1ISNA 4JK9A 4JKAA 1JDEA 2D10A 4JK8A 3EPYA 3SBGA 2I1KA 4JKDA 2FDQA 4JKGA 4ZRKA 3WA0A 3G9WA 1SGHA 4HDOA 4CYEA 1GGOA 5IJMA 2FJ9A 3U8ZA 4JKHA 2WH5A 4P7IA 4YL8A 4JKGB 1HB8A 3QIJA 1E5WA 1GC7A 3ZDTA 1DIKA 3U7DA 2J0KA 2R82A 3PVLA 2HE7A 4F7GA 3AU5A 1EF1A 2DIKA 1VBGA 4ZRJA 1MIZB 1NTIA 2AL6A 2CQUA 3FLVA 3FP5A 5JVLA 1NVLA 3X23A 1NI2A 2HRJA 1Y19B 4ILGB 1MIXA 1ACAA 1VBHA 1GG3A 1KC7A 3AU4A 1HBKA 3SBTA 4ILHA 4JKCA 4ILJA 2RQ1A 1MK9B 3E9OA 3E9LA 4JK7A 1MK7B 2D11A 2D2QA 2ZPYA 3E9PA 2J0JA 4ZRIA 2X0SA 1ST7A 4HDQA 1H4RA 4JKFA 3IVFA 4EKUA 2J0MA 2I1JA 2EMTA 2YVCA 2CB8A
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 3EPY A;  2J0K A;  3PVL A;  2I1K A;  2HE7 A;  1J19 A;  2COP A;  4DXA B;  4F7G A;  2RQ1 A;  1EF1 A;  3AU5 A;  3BIN A;  1MK9 B;  1HB6 A;  2FDQ A;  4CYE A;  4ZRJ A;  1MK7 B;  2D11 A;  2D2Q A;  4ZRK A;  3WA0 A;  2ZPY A;  1SGH A;  3G9W A;  4HDO A;  1MIZ B;  1NTI A;  2AL6 A;  2CQU A;  2EMS A;  2J0J A;  3FLV A;  1NVL A;  3FP5 A;  3X23 A;  4ZRI A;  1NI2 A;  2AEH A;  2HRJ A;  3PZD A;  5IJM A;  2FJ9 A;  4NY0 A;  1ST7 A;  1GC6 A;  1Y19 B;  1MIX A;  1ACA A;  3U8Z A;  1GG3 A;  2ABD A;  2LBB A;  4HDQ A;  1ISN A;  2WH5 A;  1H4R A;  3AU4 A;  4P7I A;  3IVF A;  4EKU A;  2J0M A;  4YL8 A;  1HB8 A;  3QIJ A;  1E5W A;  1HBK A;  2I1J A;  2EMT A;  2D10 A;  1GC7 A;  2YVC A;  3ZDT A;  2CB8 A;  3U7D A; 
#chains in the Genus database with same CATH topology
 1J19 A;  2COP A;  4JKB A;  3E66 A;  4DXA B;  1KBL A;  3BIN A;  1HB6 A;  4GXB A;  3ENB A;  2EMS A;  2AEH A;  3PZD A;  4TKN A;  4NY0 A;  1GC6 A;  2ABD A;  4JKE A;  2LBB A;  1ISN A;  4JK9 A;  4JKA A;  1JDE A;  2D10 A;  4JK8 A;  3EPY A;  3SBG A;  2I1K A;  4JKD A;  2FDQ A;  4JKG A;  4ZRK A;  3WA0 A;  3G9W A;  1SGH A;  4HDO A;  4CYE A;  1GGO A;  5IJM A;  2FJ9 A;  3U8Z A;  4JKH A;  2WH5 A;  4P7I A;  4YL8 A;  4JKG B;  1HB8 A;  3QIJ A;  1E5W A;  1GC7 A;  3ZDT A;  1DIK A;  3U7D A;  2J0K A;  2R82 A;  3PVL A;  2HE7 A;  4F7G A;  3AU5 A;  1EF1 A;  2DIK A;  1VBG A;  4ZRJ A;  1MIZ B;  1NTI A;  2AL6 A;  2CQU A;  3FLV A;  3FP5 A;  5JVL A;  1NVL A;  3X23 A;  1NI2 A;  2HRJ A;  1Y19 B;  4ILG B;  1MIX A;  1ACA A;  1VBH A;  1GG3 A;  1KC7 A;  3AU4 A;  1HBK A;  3SBT A;  4ILH A;  4JKC A;  4ILJ A;  2RQ1 A;  1MK9 B;  3E9O A;  3E9L A;  4JK7 A;  1MK7 B;  2D11 A;  2D2Q A;  2ZPY A;  3E9P A;  2J0J A;  4ZRI A;  2X0S A;  1ST7 A;  4HDQ A;  1H4R A;  4JKF A;  3IVF A;  4EKU A;  2J0M A;  2I1J A;  2EMT A;  2YVC A;  2CB8 A; 
#chains in the Genus database with same CATH homology
 1J19 A;  2COP A;  4JKB A;  3E66 A;  4DXA B;  1KBL A;  3BIN A;  1HB6 A;  4GXB A;  3ENB A;  2EMS A;  2AEH A;  3PZD A;  4TKN A;  4NY0 A;  1GC6 A;  2ABD A;  4JKE A;  2LBB A;  1ISN A;  4JK9 A;  4JKA A;  1JDE A;  2D10 A;  4JK8 A;  3EPY A;  3SBG A;  2I1K A;  4JKD A;  2FDQ A;  4JKG A;  4ZRK A;  3WA0 A;  3G9W A;  1SGH A;  4HDO A;  4CYE A;  1GGO A;  5IJM A;  2FJ9 A;  3U8Z A;  4JKH A;  2WH5 A;  4P7I A;  4YL8 A;  4JKG B;  1HB8 A;  3QIJ A;  1E5W A;  1GC7 A;  3ZDT A;  1DIK A;  3U7D A;  2J0K A;  2R82 A;  3PVL A;  2HE7 A;  4F7G A;  3AU5 A;  1EF1 A;  2DIK A;  1VBG A;  4ZRJ A;  1MIZ B;  1NTI A;  2AL6 A;  2CQU A;  3FLV A;  3FP5 A;  5JVL A;  1NVL A;  3X23 A;  1NI2 A;  2HRJ A;  1Y19 B;  4ILG B;  1MIX A;  1ACA A;  1VBH A;  1GG3 A;  1KC7 A;  3AU4 A;  1HBK A;  3SBT A;  4ILH A;  4JKC A;  4ILJ A;  2RQ1 A;  1MK9 B;  3E9O A;  3E9L A;  4JK7 A;  1MK7 B;  2D11 A;  2D2Q A;  2ZPY A;  3E9P A;  2J0J A;  4ZRI A;  2X0S A;  1ST7 A;  4HDQ A;  1H4R A;  4JKF A;  3IVF A;  4EKU A;  2J0M A;  2I1J A;  2EMT A;  2YVC A;  2CB8 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1NVLA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations