The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
30
|
sequence length |
86
|
structure length |
86
|
Chain Sequence |
VSQLFEEKAKAVNELPTKPSTDELLELYALYKQATVGDNDKEKPGIFNMKDRYKWEAWENLKGKSQEDAEKEYIALVDQLIAKYSS
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Different secondary structure elements as scaffolds for protein folding transition states of two homologous four-helix bundles
pubmed doi rcsb |
| molecule tags |
Transport protein
|
| source organism |
Saccharomyces cerevisiae
|
| molecule keywords |
Acyl-CoA-binding protein
|
| total genus |
30
|
| structure length |
86
|
| sequence length |
86
|
| ec nomenclature | |
| pdb deposition date | 2004-03-25 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00887 | ACBP | Acyl CoA binding protein |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Up-down Bundle | Acyl-CoA Binding Protein | Acyl-CoA Binding Protein |
#chains in the Genus database with same CATH superfamily 4F7G A; 4YL8 A; 4ZRJ A; 2FJ9 A; 4NY0 A; 1MK9 B; 3ZDT A; 1Y19 B; 1MK7 B; 1ACA A; 1SGH A; 3QIJ A; 2J0J A; 1MIZ B; 1GC7 A; 4ZRI A; 1GG3 A; 5IJM A; 1NTI A; 2D11 A; 3BIN A; 4HDQ A; 3FP5 A; 3AU4 A; 1NVL A; 3U8Z A; 3G9W A; 2ABD A; 2J0M A; 1ISN A; 1NI2 A; 2D2Q A; 2ZPY A; 3U7D A; 1GC6 A; 2J0K A; 3AU5 A; 3PZD A; 2AL6 A; 2I1J A; 1MIX A; 3EPY A; 1EF1 A; 1HBK A; 2D10 A; 4DXA B; 2HE7 A; 2CQU A; 1ST7 A; 2COP A; 2WH5 A; 4ZRK A; 2FDQ A; 1HB8 A; 1HB6 A; 3IVF A; 2HRJ A; 1J19 A; 1H4R A; 2CB8 A; 3FLV A; 2EMS A; 4HDO A; 4CYE A; 2RQ1 A; 4P7I A; 2I1K A; 3WA0 A; 4EKU A; 2EMT A; 1E5W A; 3PVL A; 3X23 A; 2YVC A; 2LBB A; 2AEH A; #chains in the Genus database with same CATH topology 4F7G A; 4NY0 A; 2J0J A; 4ZRI A; 2R82 A; 3BIN A; 3FP5 A; 3U8Z A; 3E66 A; 1KC7 A; 1NI2 A; 3U7D A; 3E9P A; 4JK9 A; 4DXA B; 1EF1 A; 2HE7 A; 4JKB A; 3FLV A; 3X23 A; 2YVC A; 1ACA A; 4JK8 A; 4JKE A; 1MK7 B; 3E9O A; 5JVL A; 3QIJ A; 1GC7 A; 1GG3 A; 5IJM A; 4JKG B; 3SBG A; 1GGO A; 2X0S A; 3G9W A; 1KBL A; 3SBT A; 1GC6 A; 3PZD A; 1MIX A; 2D10 A; 1JDE A; 2CQU A; 2FDQ A; 1HB8 A; 3IVF A; 2RQ1 A; 4JK7 A; 3WA0 A; 2EMT A; 1E5W A; 2AEH A; 1VBH A; 4GXB A; 1DIK A; 4TKN A; 4YL8 A; 4ZRJ A; 1Y19 B; 1SGH A; 4JKF A; 4JKH A; 1NTI A; 2D11 A; 2ABD A; 1ISN A; 2D2Q A; 2J0K A; 3ENB A; 2AL6 A; 2I1J A; 3EPY A; 4ILJ A; 2WH5 A; 2HRJ A; 2CB8 A; 4CYE A; 2DIK A; 2FJ9 A; 1MK9 B; 3ZDT A; 4ILG B; 1MIZ B; 4HDQ A; 3AU4 A; 1NVL A; 2J0M A; 2ZPY A; 3AU5 A; 4JKG A; 1HBK A; 1VBG A; 3E9L A; 4ILH A; 1ST7 A; 2COP A; 4ZRK A; 4JKD A; 1HB6 A; 1J19 A; 1H4R A; 4HDO A; 2EMS A; 4P7I A; 2I1K A; 4JKA A; 4EKU A; 3PVL A; 4JKC A; 2LBB A; #chains in the Genus database with same CATH homology 4F7G A; 4NY0 A; 2J0J A; 4ZRI A; 2R82 A; 3BIN A; 3FP5 A; 3U8Z A; 3E66 A; 1KC7 A; 1NI2 A; 3U7D A; 3E9P A; 4JK9 A; 4DXA B; 1EF1 A; 2HE7 A; 4JKB A; 3FLV A; 3X23 A; 2YVC A; 1ACA A; 4JK8 A; 4JKE A; 1MK7 B; 3E9O A; 5JVL A; 3QIJ A; 1GC7 A; 1GG3 A; 5IJM A; 4JKG B; 3SBG A; 1GGO A; 2X0S A; 3G9W A; 1KBL A; 3SBT A; 1GC6 A; 3PZD A; 1MIX A; 2D10 A; 1JDE A; 2CQU A; 2FDQ A; 1HB8 A; 3IVF A; 2RQ1 A; 4JK7 A; 3WA0 A; 2EMT A; 1E5W A; 2AEH A; 1VBH A; 4GXB A; 1DIK A; 4TKN A; 4YL8 A; 4ZRJ A; 1Y19 B; 1SGH A; 4JKF A; 4JKH A; 1NTI A; 2D11 A; 2ABD A; 1ISN A; 2D2Q A; 2J0K A; 3ENB A; 2AL6 A; 2I1J A; 3EPY A; 4ILJ A; 2WH5 A; 2HRJ A; 2CB8 A; 4CYE A; 2DIK A; 2FJ9 A; 1MK9 B; 3ZDT A; 4ILG B; 1MIZ B; 4HDQ A; 3AU4 A; 1NVL A; 2J0M A; 2ZPY A; 3AU5 A; 4JKG A; 1HBK A; 1VBG A; 3E9L A; 4ILH A; 1ST7 A; 2COP A; 4ZRK A; 4JKD A; 1HB6 A; 1J19 A; 1H4R A; 4HDO A; 2EMS A; 4P7I A; 2I1K A; 4JKA A; 4EKU A; 3PVL A; 4JKC A; 2LBB A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
