2CB8 | Genus

Total Genus 35

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	35
sequence length	86
structure length	86
Chain Sequence	SQAEFEKAAEEVRHLKTKPSDEEMLFIYGHYKQATVGDINTERPGMLDFTGKAKWDAWNELKGTSKEDAMKAYINKVEELKKKYGI

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 86 atoms

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86 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Transport
source organism	Homo sapiens
publication title	High Resolution Crystal Structures of Unliganded and Liganded Human Liver Acbp Reveal a New Mode of Binding for the Acyl-Coa Ligand. pubmed doi rcsb
molecule keywords	ACYL-COA-BINDING PROTEIN
total genus	35
structure length	86
sequence length	86
chains with identical sequence	B
ec nomenclature
pdb deposition date	2006-01-03

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00887	ACBP	Acyl CoA binding protein

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.20.80.10	Mainly Alpha	Up-down Bundle	Acyl-CoA Binding Protein	Acyl-CoA Binding Protein	2cb8A00

4DXAB 2EMTA 1MIZB 2ZPYA 2HRJA 2ABDA 3AU5A 3AU4A 4F7GA 2CQUA 2CB8A 2J0KA 2D10A 1HBKA 3BINA 3FP5A 1GG3A 3G9WA 3ZDTA 2D11A 2LBBA 2J0JA 4ZRIA 4HDQA 1GC6A 3PVLA 1EF1A 2AEHA 2FJ9A 2RQ1A 1MK9B 3U8ZA 2HE7A 4ZRJA 1Y19B 4P7IA 5IJMA 4ZRKA 1NVLA 3QIJA 2WH5A 4CYEA 3EPYA 2J0MA 1ISNA 3FLVA 4YL8A 1SGHA 2AL6A 1ST7A 4HDOA 1HB8A 1J19A 3U7DA 2D2QA 1GC7A 1NTIA 2EMSA 1MIXA 2FDQA 3X23A 1ACAA 1E5WA 1HB6A 2I1KA 1MK7B 2I1JA 2YVCA 1NI2A 3WA0A 3PZDA 3IVFA 4EKUA 4NY0A 1H4RA 2COPA
chains in the Genus database with same CATH superfamily

4DXAB 1KBLA 3E9LA 2ZPYA 4JKFA 2CQUA 2CB8A 1KC7A 1GC6A 2RQ1A 5IJMA 2WH5A 3E9OA 4JKAA 4ILGB 4TKNA 4ILHA 3SBTA 3FLVA 4YL8A 1NTIA 3X23A 2I1JA 3WA0A 3PZDA 1VBHA 1H4RA 2EMTA 1MIZB 3AU5A 2J0KA 3BINA 3FP5A 3G9WA 1GG3A 2D11A 4ZRIA 4HDQA 2AEHA 2FJ9A 2HE7A 3ENBA 5JVLA 2X0SA 4CYEA 2R82A 3E9PA 1ST7A 1HB8A 1J19A 2EMSA 1GC7A 1VBGA 4JKDA 1ACAA 1E5WA 1HB6A 1NI2A 3IVFA 2COPA 3U7DA 4JK9A 2HRJA 3AU4A 4F7GA 1HBKA 4JKCA 2LBBA 4ILJA 4ZRKA 4JKHA 3QIJA 2J0MA 1ISNA 1GGOA 2DIKA 4HDOA 1MIXA 2FDQA 4JKEA 2I1KA 1MK7B 2YVCA 4NY0A 2ABDA 2D10A 4JK7A 4GXBA 3ZDTA 3SBGA 1JDEA 2J0JA 4JKBA 3PVLA 1EF1A 4JKGB 1MK9B 3U8ZA 4ZRJA 1Y19B 4P7IA 1NVLA 3EPYA 4JKGA 1SGHA 2AL6A 4EKUA 2D2QA 1DIKA 4JK8A 3E66A
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 4DXA B;  2EMT A;  1MIZ B;  2ZPY A;  2HRJ A;  2ABD A;  3AU5 A;  3AU4 A;  4F7G A;  2CQU A;  2CB8 A;  2J0K A;  2D10 A;  1HBK A;  3BIN A;  3FP5 A;  1GG3 A;  3G9W A;  3ZDT A;  2D11 A;  2LBB A;  2J0J A;  4ZRI A;  4HDQ A;  1GC6 A;  3PVL A;  1EF1 A;  2AEH A;  2FJ9 A;  2RQ1 A;  1MK9 B;  3U8Z A;  2HE7 A;  4ZRJ A;  1Y19 B;  4P7I A;  5IJM A;  4ZRK A;  1NVL A;  3QIJ A;  2WH5 A;  4CYE A;  3EPY A;  2J0M A;  1ISN A;  3FLV A;  4YL8 A;  1SGH A;  2AL6 A;  1ST7 A;  4HDO A;  1HB8 A;  1J19 A;  3U7D A;  2D2Q A;  1GC7 A;  1NTI A;  2EMS A;  1MIX A;  2FDQ A;  3X23 A;  1ACA A;  1E5W A;  1HB6 A;  2I1K A;  1MK7 B;  2I1J A;  2YVC A;  1NI2 A;  3WA0 A;  3PZD A;  3IVF A;  4EKU A;  4NY0 A;  1H4R A;  2COP A; 
#chains in the Genus database with same CATH topology
 4DXA B;  1KBL A;  3E9L A;  2ZPY A;  4JKF A;  2CQU A;  2CB8 A;  1KC7 A;  1GC6 A;  2RQ1 A;  5IJM A;  2WH5 A;  3E9O A;  4JKA A;  4ILG B;  4TKN A;  4ILH A;  3SBT A;  3FLV A;  4YL8 A;  1NTI A;  3X23 A;  2I1J A;  3WA0 A;  3PZD A;  1VBH A;  1H4R A;  2EMT A;  1MIZ B;  3AU5 A;  2J0K A;  3BIN A;  3FP5 A;  3G9W A;  1GG3 A;  2D11 A;  4ZRI A;  4HDQ A;  2AEH A;  2FJ9 A;  2HE7 A;  3ENB A;  5JVL A;  2X0S A;  4CYE A;  2R82 A;  3E9P A;  1ST7 A;  1HB8 A;  1J19 A;  2EMS A;  1GC7 A;  1VBG A;  4JKD A;  1ACA A;  1E5W A;  1HB6 A;  1NI2 A;  3IVF A;  2COP A;  3U7D A;  4JK9 A;  2HRJ A;  3AU4 A;  4F7G A;  1HBK A;  4JKC A;  2LBB A;  4ILJ A;  4ZRK A;  4JKH A;  3QIJ A;  2J0M A;  1ISN A;  1GGO A;  2DIK A;  4HDO A;  1MIX A;  2FDQ A;  4JKE A;  2I1K A;  1MK7 B;  2YVC A;  4NY0 A;  2ABD A;  2D10 A;  4JK7 A;  4GXB A;  3ZDT A;  3SBG A;  1JDE A;  2J0J A;  4JKB A;  3PVL A;  1EF1 A;  4JKG B;  1MK9 B;  3U8Z A;  4ZRJ A;  1Y19 B;  4P7I A;  1NVL A;  3EPY A;  4JKG A;  1SGH A;  2AL6 A;  4EKU A;  2D2Q A;  1DIK A;  4JK8 A;  3E66 A; 
#chains in the Genus database with same CATH homology
 4DXA B;  1KBL A;  3E9L A;  2ZPY A;  4JKF A;  2CQU A;  2CB8 A;  1KC7 A;  1GC6 A;  2RQ1 A;  5IJM A;  2WH5 A;  3E9O A;  4JKA A;  4ILG B;  4TKN A;  4ILH A;  3SBT A;  3FLV A;  4YL8 A;  1NTI A;  3X23 A;  2I1J A;  3WA0 A;  3PZD A;  1VBH A;  1H4R A;  2EMT A;  1MIZ B;  3AU5 A;  2J0K A;  3BIN A;  3FP5 A;  3G9W A;  1GG3 A;  2D11 A;  4ZRI A;  4HDQ A;  2AEH A;  2FJ9 A;  2HE7 A;  3ENB A;  5JVL A;  2X0S A;  4CYE A;  2R82 A;  3E9P A;  1ST7 A;  1HB8 A;  1J19 A;  2EMS A;  1GC7 A;  1VBG A;  4JKD A;  1ACA A;  1E5W A;  1HB6 A;  1NI2 A;  3IVF A;  2COP A;  3U7D A;  4JK9 A;  2HRJ A;  3AU4 A;  4F7G A;  1HBK A;  4JKC A;  2LBB A;  4ILJ A;  4ZRK A;  4JKH A;  3QIJ A;  2J0M A;  1ISN A;  1GGO A;  2DIK A;  4HDO A;  1MIX A;  2FDQ A;  4JKE A;  2I1K A;  1MK7 B;  2YVC A;  4NY0 A;  2ABD A;  2D10 A;  4JK7 A;  4GXB A;  3ZDT A;  3SBG A;  1JDE A;  2J0J A;  4JKB A;  3PVL A;  1EF1 A;  4JKG B;  1MK9 B;  3U8Z A;  4ZRJ A;  1Y19 B;  4P7I A;  1NVL A;  3EPY A;  4JKG A;  1SGH A;  2AL6 A;  4EKU A;  2D2Q A;  1DIK A;  4JK8 A;  3E66 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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2CB8A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations