2COP | Genus

Total Genus 23

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	23
sequence length	109
structure length	109
Chain Sequence	GSSGSSGLAELFEKAAAHLQGLIQVASREQLLYLYARYKQVKVGNCNTPKPSFFDFEGKQKWEAWKALGDSSPSQAMQEYIAVVKKLDPGWNPQIPEKKGKEASGPSSG

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 109 atoms

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109 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Lipid binding protein
source organism	Homo sapiens
publication title	Solution structure of RSGI RUH-040, an ACBP domain from human cDNA rcsb
molecule keywords	Acyl-Coenzyme A binding domain containing 6
total genus	23
structure length	109
sequence length	109
ec nomenclature
pdb deposition date	2005-05-18

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00887	ACBP	Acyl CoA binding protein

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.20.80.10	Mainly Alpha	Up-down Bundle	Acyl-CoA Binding Protein	Acyl-CoA Binding Protein	2copA00

1NTIA 3IVFA 1HB6A 1SGHA 3FLVA 3QIJA 4DXAB 4P7IA 4NY0A 1EF1A 1H4RA 1MK9B 3G9WA 2EMSA 2FJ9A 1MK7B 4ZRJA 4F7GA 1HB8A 1Y19B 3ZDTA 2EMTA 1NVLA 1J19A 2RQ1A 2HRJA 5IJMA 1NI2A 3FP5A 3PVLA 2LBBA 2CQUA 3WA0A 2ZPYA 3X23A 4CYEA 2J0JA 2YVCA 3EPYA 1ST7A 2J0KA 3AU5A 2I1KA 1E5WA 1MIZB 2D10A 4HDQA 1GG3A 2AL6A 2WH5A 2I1JA 1GC7A 2ABDA 2J0MA 4HDOA 2HE7A 1ISNA 4YL8A 2COPA 2FDQA 4ZRKA 2AEHA 1MIXA 3U7DA 2D2QA 3BINA 2CB8A 3AU4A 4ZRIA 3PZDA 3U8ZA 4EKUA 1ACAA 1GC6A 1HBKA 2D11A
chains in the Genus database with same CATH superfamily

4JK9A 3FLVA 3QIJA 4P7IA 1DIKA 1H4RA 1MK9B 4JKAA 2EMSA 4JKCA 4JKEA 3ENBA 1NVLA 5JVLA 2RQ1A 4ILHA 2LBBA 3X23A 2ZPYA 2J0JA 2J0KA 4HDQA 2AL6A 2I1JA 2J0MA 1KC7A 2COPA 2FDQA 2AEHA 2X0SA 3AU4A 3U8ZA 4JKDA 1JDEA 1ACAA 1GC6A 3IVFA 1HB6A 4NY0A 1EF1A 4JK8A 4ZRJA 3ZDTA 2EMTA 3E66A 4GXBA 1NI2A 3FP5A 3PVLA 2CQUA 4JKHA 3EPYA 3AU5A 2D10A 2ABDA 2HE7A 3E9OA 1VBGA 3U7DA 4TKNA 2I1KA 1GGOA 1NTIA 4DXAB 1KBLA 3G9WA 3SBTA 4F7GA 1Y19B 1J19A 4JKGB 4ILJA 4JKBA 1ST7A 1E5WA 1MIZB 3SBGA 2WH5A 1VBHA 1GC7A 4HDOA 1MIXA 4JK7A 3BINA 2CB8A 2D11A 4JKFA 1SGHA 2FJ9A 4JKGA 1MK7B 1HB8A 2HRJA 2R82A 5IJMA 3WA0A 4ILGB 4CYEA 2DIKA 2YVCA 1GG3A 3E9PA 4YL8A 1ISNA 4ZRKA 3E9LA 4EKUA 2D2QA 4ZRIA 3PZDA 1HBKA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 1NTI A;  3IVF A;  1HB6 A;  1SGH A;  3FLV A;  3QIJ A;  4DXA B;  4P7I A;  4NY0 A;  1EF1 A;  1H4R A;  1MK9 B;  3G9W A;  2EMS A;  2FJ9 A;  1MK7 B;  4ZRJ A;  4F7G A;  1HB8 A;  1Y19 B;  3ZDT A;  2EMT A;  1NVL A;  1J19 A;  2RQ1 A;  2HRJ A;  5IJM A;  1NI2 A;  3FP5 A;  3PVL A;  2LBB A;  2CQU A;  3WA0 A;  2ZPY A;  3X23 A;  4CYE A;  2J0J A;  2YVC A;  3EPY A;  1ST7 A;  2J0K A;  3AU5 A;  2I1K A;  1E5W A;  1MIZ B;  2D10 A;  4HDQ A;  1GG3 A;  2AL6 A;  2WH5 A;  2I1J A;  1GC7 A;  2ABD A;  2J0M A;  4HDO A;  2HE7 A;  1ISN A;  4YL8 A;  2COP A;  2FDQ A;  4ZRK A;  2AEH A;  1MIX A;  3U7D A;  2D2Q A;  3BIN A;  2CB8 A;  3AU4 A;  4ZRI A;  3PZD A;  3U8Z A;  4EKU A;  1ACA A;  1GC6 A;  1HBK A;  2D11 A; 
#chains in the Genus database with same CATH topology
 4JK9 A;  3FLV A;  3QIJ A;  4P7I A;  1DIK A;  1H4R A;  1MK9 B;  4JKA A;  2EMS A;  4JKC A;  4JKE A;  3ENB A;  1NVL A;  5JVL A;  2RQ1 A;  4ILH A;  2LBB A;  3X23 A;  2ZPY A;  2J0J A;  2J0K A;  4HDQ A;  2AL6 A;  2I1J A;  2J0M A;  1KC7 A;  2COP A;  2FDQ A;  2AEH A;  2X0S A;  3AU4 A;  3U8Z A;  4JKD A;  1JDE A;  1ACA A;  1GC6 A;  3IVF A;  1HB6 A;  4NY0 A;  1EF1 A;  4JK8 A;  4ZRJ A;  3ZDT A;  2EMT A;  3E66 A;  4GXB A;  1NI2 A;  3FP5 A;  3PVL A;  2CQU A;  4JKH A;  3EPY A;  3AU5 A;  2D10 A;  2ABD A;  2HE7 A;  3E9O A;  1VBG A;  3U7D A;  4TKN A;  2I1K A;  1GGO A;  1NTI A;  4DXA B;  1KBL A;  3G9W A;  3SBT A;  4F7G A;  1Y19 B;  1J19 A;  4JKG B;  4ILJ A;  4JKB A;  1ST7 A;  1E5W A;  1MIZ B;  3SBG A;  2WH5 A;  1VBH A;  1GC7 A;  4HDO A;  1MIX A;  4JK7 A;  3BIN A;  2CB8 A;  2D11 A;  4JKF A;  1SGH A;  2FJ9 A;  4JKG A;  1MK7 B;  1HB8 A;  2HRJ A;  2R82 A;  5IJM A;  3WA0 A;  4ILG B;  4CYE A;  2DIK A;  2YVC A;  1GG3 A;  3E9P A;  4YL8 A;  1ISN A;  4ZRK A;  3E9L A;  4EKU A;  2D2Q A;  4ZRI A;  3PZD A;  1HBK A; 
#chains in the Genus database with same CATH homology
 4JK9 A;  3FLV A;  3QIJ A;  4P7I A;  1DIK A;  1H4R A;  1MK9 B;  4JKA A;  2EMS A;  4JKC A;  4JKE A;  3ENB A;  1NVL A;  5JVL A;  2RQ1 A;  4ILH A;  2LBB A;  3X23 A;  2ZPY A;  2J0J A;  2J0K A;  4HDQ A;  2AL6 A;  2I1J A;  2J0M A;  1KC7 A;  2COP A;  2FDQ A;  2AEH A;  2X0S A;  3AU4 A;  3U8Z A;  4JKD A;  1JDE A;  1ACA A;  1GC6 A;  3IVF A;  1HB6 A;  4NY0 A;  1EF1 A;  4JK8 A;  4ZRJ A;  3ZDT A;  2EMT A;  3E66 A;  4GXB A;  1NI2 A;  3FP5 A;  3PVL A;  2CQU A;  4JKH A;  3EPY A;  3AU5 A;  2D10 A;  2ABD A;  2HE7 A;  3E9O A;  1VBG A;  3U7D A;  4TKN A;  2I1K A;  1GGO A;  1NTI A;  4DXA B;  1KBL A;  3G9W A;  3SBT A;  4F7G A;  1Y19 B;  1J19 A;  4JKG B;  4ILJ A;  4JKB A;  1ST7 A;  1E5W A;  1MIZ B;  3SBG A;  2WH5 A;  1VBH A;  1GC7 A;  4HDO A;  1MIX A;  4JK7 A;  3BIN A;  2CB8 A;  2D11 A;  4JKF A;  1SGH A;  2FJ9 A;  4JKG A;  1MK7 B;  1HB8 A;  2HRJ A;  2R82 A;  5IJM A;  3WA0 A;  4ILG B;  4CYE A;  2DIK A;  2YVC A;  1GG3 A;  3E9P A;  4YL8 A;  1ISN A;  4ZRK A;  3E9L A;  4EKU A;  2D2Q A;  4ZRI A;  3PZD A;  1HBK A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2COPA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations