2CQU | Genus

Total Genus 19

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	19
sequence length	116
structure length	116
Chain Sequence	GSSGSSGMNRTAMRASQKDFENSMNQVKLLKKDPGNEVKLKLYALYKQATEGPCNMPKPGVFDLINKAKWDAWNALGSLPKEAARQNYVDLVSSLSPSLESSSQVEPGTDSGPSSG

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Isomerase
source organism	Homo sapiens
publication title	Solution Structure of RSGI RUH-045, a Human Acyl-CoA Binding Protein rcsb
molecule keywords	peroxisomal D3,D2-enoyl-CoA isomerase
total genus	19
structure length	116
sequence length	116
ec nomenclature	ec 5.3.3.8: Delta(3)-Delta(2)-enoyl-CoA isomerase.
pdb deposition date	2005-05-20

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00887	ACBP	Acyl CoA binding protein

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.20.80.10	Mainly Alpha	Up-down Bundle	Acyl-CoA Binding Protein	Acyl-CoA Binding Protein	2cquA00

2D10A 2EMSA 2I1KA 4DXAB 3G9WA 2FJ9A 4HDQA 4YL8A 2WH5A 1MK9B 2COPA 2LBBA 3PVLA 2EMTA 4HDOA 1ACAA 4ZRKA 3BINA 3EPYA 1GC7A 2AL6A 1HB6A 1J19A 1GC6A 1SGHA 1ST7A 2CB8A 2D2QA 3FLVA 4F7GA 1NI2A 1GG3A 3WA0A 3ZDTA 1HBKA 3QIJA 2HE7A 3X23A 2I1JA 2RQ1A 3FP5A 4ZRIA 3U7DA 2AEHA 3AU5A 2ABDA 4ZRJA 2J0KA 2ZPYA 1NVLA 1MIZB 4NY0A 1E5WA 2D11A 3AU4A 3U8ZA 1EF1A 4P7IA 1H4RA 2HRJA 3PZDA 1HB8A 1ISNA 1MIXA 2YVCA 4CYEA 4EKUA 2J0MA 2FDQA 2J0JA 1MK7B 3IVFA 5IJMA 1NTIA 1Y19B 2CQUA
chains in the Genus database with same CATH superfamily

4GXBA 2I1KA 2WH5A 4HDOA 1ACAA 4ZRKA 3EPYA 1GC7A 4JKBA 1SGHA 4ILGB 4JK9A 1GG3A 3QIJA 3X23A 2RQ1A 3FP5A 4TKNA 3E9PA 2J0KA 4JKCA 1NVLA 4JK8A 1DIKA 1H4RA 1HB8A 4EKUA 2FDQA 1MK7B 3IVFA 1NTIA 1Y19B 4JKGB 4DXAB 1MK9B 2COPA 2LBBA 3PVLA 4JKAA 1GC6A 1KBLA 3U7DA 3AU5A 4NY0A 3U8ZA 1VBGA 2HRJA 4CYEA 1VBHA 2J0JA 2D10A 4JK7A 2EMSA 4HDQA 3E66A 2EMTA 1KC7A 2AL6A 4JKDA 1J19A 1ST7A 3FLVA 3ZDTA 4ZRJA 3ENBA 4ILJA 2DIKA 2ZPYA 5JVLA 2D11A 1EF1A 2X0SA 3PZDA 1ISNA 4JKGA 2YVCA 3SBTA 3E9OA 4JKEA 2CQUA 4JKHA 3G9WA 2FJ9A 4YL8A 1GGOA 3BINA 4JKFA 1HB6A 2CB8A 2D2QA 4F7GA 3SBGA 4ILHA 1NI2A 3WA0A 2R82A 1HBKA 1JDEA 2HE7A 2I1JA 4ZRIA 2AEHA 2ABDA 1MIZB 3E9LA 1E5WA 3AU4A 4P7IA 1MIXA 2J0MA 5IJMA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 2D10 A;  2EMS A;  2I1K A;  4DXA B;  3G9W A;  2FJ9 A;  4HDQ A;  4YL8 A;  2WH5 A;  1MK9 B;  2COP A;  2LBB A;  3PVL A;  2EMT A;  4HDO A;  1ACA A;  4ZRK A;  3BIN A;  3EPY A;  1GC7 A;  2AL6 A;  1HB6 A;  1J19 A;  1GC6 A;  1SGH A;  1ST7 A;  2CB8 A;  2D2Q A;  3FLV A;  4F7G A;  1NI2 A;  1GG3 A;  3WA0 A;  3ZDT A;  1HBK A;  3QIJ A;  2HE7 A;  3X23 A;  2I1J A;  2RQ1 A;  3FP5 A;  4ZRI A;  3U7D A;  2AEH A;  3AU5 A;  2ABD A;  4ZRJ A;  2J0K A;  2ZPY A;  1NVL A;  1MIZ B;  4NY0 A;  1E5W A;  2D11 A;  3AU4 A;  3U8Z A;  1EF1 A;  4P7I A;  1H4R A;  2HRJ A;  3PZD A;  1HB8 A;  1ISN A;  1MIX A;  2YVC A;  4CYE A;  4EKU A;  2J0M A;  2FDQ A;  2J0J A;  1MK7 B;  3IVF A;  5IJM A;  1NTI A;  1Y19 B;  2CQU A; 
#chains in the Genus database with same CATH topology
 4GXB A;  2I1K A;  2WH5 A;  4HDO A;  1ACA A;  4ZRK A;  3EPY A;  1GC7 A;  4JKB A;  1SGH A;  4ILG B;  4JK9 A;  1GG3 A;  3QIJ A;  3X23 A;  2RQ1 A;  3FP5 A;  4TKN A;  3E9P A;  2J0K A;  4JKC A;  1NVL A;  4JK8 A;  1DIK A;  1H4R A;  1HB8 A;  4EKU A;  2FDQ A;  1MK7 B;  3IVF A;  1NTI A;  1Y19 B;  4JKG B;  4DXA B;  1MK9 B;  2COP A;  2LBB A;  3PVL A;  4JKA A;  1GC6 A;  1KBL A;  3U7D A;  3AU5 A;  4NY0 A;  3U8Z A;  1VBG A;  2HRJ A;  4CYE A;  1VBH A;  2J0J A;  2D10 A;  4JK7 A;  2EMS A;  4HDQ A;  3E66 A;  2EMT A;  1KC7 A;  2AL6 A;  4JKD A;  1J19 A;  1ST7 A;  3FLV A;  3ZDT A;  4ZRJ A;  3ENB A;  4ILJ A;  2DIK A;  2ZPY A;  5JVL A;  2D11 A;  1EF1 A;  2X0S A;  3PZD A;  1ISN A;  4JKG A;  2YVC A;  3SBT A;  3E9O A;  4JKE A;  2CQU A;  4JKH A;  3G9W A;  2FJ9 A;  4YL8 A;  1GGO A;  3BIN A;  4JKF A;  1HB6 A;  2CB8 A;  2D2Q A;  4F7G A;  3SBG A;  4ILH A;  1NI2 A;  3WA0 A;  2R82 A;  1HBK A;  1JDE A;  2HE7 A;  2I1J A;  4ZRI A;  2AEH A;  2ABD A;  1MIZ B;  3E9L A;  1E5W A;  3AU4 A;  4P7I A;  1MIX A;  2J0M A;  5IJM A; 
#chains in the Genus database with same CATH homology
 4GXB A;  2I1K A;  2WH5 A;  4HDO A;  1ACA A;  4ZRK A;  3EPY A;  1GC7 A;  4JKB A;  1SGH A;  4ILG B;  4JK9 A;  1GG3 A;  3QIJ A;  3X23 A;  2RQ1 A;  3FP5 A;  4TKN A;  3E9P A;  2J0K A;  4JKC A;  1NVL A;  4JK8 A;  1DIK A;  1H4R A;  1HB8 A;  4EKU A;  2FDQ A;  1MK7 B;  3IVF A;  1NTI A;  1Y19 B;  4JKG B;  4DXA B;  1MK9 B;  2COP A;  2LBB A;  3PVL A;  4JKA A;  1GC6 A;  1KBL A;  3U7D A;  3AU5 A;  4NY0 A;  3U8Z A;  1VBG A;  2HRJ A;  4CYE A;  1VBH A;  2J0J A;  2D10 A;  4JK7 A;  2EMS A;  4HDQ A;  3E66 A;  2EMT A;  1KC7 A;  2AL6 A;  4JKD A;  1J19 A;  1ST7 A;  3FLV A;  3ZDT A;  4ZRJ A;  3ENB A;  4ILJ A;  2DIK A;  2ZPY A;  5JVL A;  2D11 A;  1EF1 A;  2X0S A;  3PZD A;  1ISN A;  4JKG A;  2YVC A;  3SBT A;  3E9O A;  4JKE A;  2CQU A;  4JKH A;  3G9W A;  2FJ9 A;  4YL8 A;  1GGO A;  3BIN A;  4JKF A;  1HB6 A;  2CB8 A;  2D2Q A;  4F7G A;  3SBG A;  4ILH A;  1NI2 A;  3WA0 A;  2R82 A;  1HBK A;  1JDE A;  2HE7 A;  2I1J A;  4ZRI A;  2AEH A;  2ABD A;  1MIZ B;  3E9L A;  1E5W A;  3AU4 A;  4P7I A;  1MIX A;  2J0M A;  5IJM A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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2CQUA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations