2FDQ | Genus

Total Genus 33

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	33
sequence length	86
structure length	86
Chain Sequence	SQAEFDKAAEEVKNLKTKPADDEMLFIYSHYKQATVGDINTERPGMLDFKGKAKWDAWNQLKGTSKEDAMKSYIDKVEELKKKYGI

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 86 atoms

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86 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Transport protein
publication title	Structure of armadillo ACBP: a new member of the acyl-CoA-binding protein family. pubmed doi rcsb
molecule keywords	Acyl-CoA-binding protein
total genus	33
structure length	86
sequence length	86
chains with identical sequence	B, C
ec nomenclature
pdb deposition date	2005-12-14

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00887	ACBP	Acyl CoA binding protein

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.20.80.10	Mainly Alpha	Up-down Bundle	Acyl-CoA Binding Protein	Acyl-CoA Binding Protein	2fdqA00

3X23A 3BINA 2CB8A 4ZRJA 3U8ZA 3AU5A 1H4RA 1SGHA 1NTIA 3QIJA 4HDOA 2LBBA 2EMSA 2D11A 2EMTA 2HE7A 2RQ1A 1EF1A 2J0JA 4YL8A 1E5WA 3ZDTA 3PVLA 1HBKA 4CYEA 4ZRIA 3EPYA 2ABDA 1GC7A 4HDQA 4DXAB 4ZRKA 3G9WA 3U7DA 4F7GA 2ZPYA 3AU4A 3FLVA 1MK7B 2HRJA 4P7IA 3WA0A 5IJMA 2COPA 3IVFA 2D10A 1MIXA 1MK9B 2J0KA 1ISNA 2CQUA 1NVLA 2AEHA 2WH5A 1MIZB 2YVCA 4NY0A 4EKUA 2D2QA 1GG3A 3PZDA 1J19A 1HB6A 2AL6A 1Y19B 2J0MA 3FP5A 1ACAA 1ST7A 1HB8A 1NI2A 2FJ9A 2FDQA 1GC6A 2I1KA 2I1JA
chains in the Genus database with same CATH superfamily

3X23A 2CB8A 4JKGB 1H4RA 3QIJA 1NTIA 1VBHA 2D11A 2EMTA 4JKCA 2RQ1A 2J0JA 3ZDTA 1DIKA 3SBGA 1GC7A 4HDQA 3G9WA 2X0SA 3FLVA 4JKAA 4JKHA 1VBGA 1ISNA 2CQUA 3E9OA 1KBLA 4JKBA 4JKFA 2D2QA 5JVLA 1Y19B 1KC7A 1ACAA 1ST7A 4JKDA 4ZRJA 3BINA 3U8ZA 4HDOA 1SGHA 4JKEA 2LBBA 1JDEA 4ILJA 3E66A 1EF1A 1E5WA 4ILHA 4ZRKA 3U7DA 2ZPYA 2HRJA 5IJMA 2D10A 2AEHA 4JK8A 1GC6A 3E9PA 3SBTA 2EMSA 2HE7A 4YL8A 3PVLA 4CYEA 4ZRIA 4JK9A 2ABDA 4F7GA 3AU4A 1MK7B 4P7IA 3WA0A 3ENBA 1MIZB 2YVCA 2DIKA 3PZDA 1J19A 2AL6A 3FP5A 1NI2A 4NY0A 2FDQA 2I1KA 2I1JA 3AU5A 3E9LA 1GGOA 1HBKA 2R82A 3EPYA 4DXAB 4JK7A 2COPA 3IVFA 1MIXA 1MK9B 2J0KA 1NVLA 4GXBA 4TKNA 2WH5A 4ILGB 4JKGA 4EKUA 1GG3A 1HB6A 2J0MA 2FJ9A 1HB8A
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 3X23 A;  3BIN A;  2CB8 A;  4ZRJ A;  3U8Z A;  3AU5 A;  1H4R A;  1SGH A;  1NTI A;  3QIJ A;  4HDO A;  2LBB A;  2EMS A;  2D11 A;  2EMT A;  2HE7 A;  2RQ1 A;  1EF1 A;  2J0J A;  4YL8 A;  1E5W A;  3ZDT A;  3PVL A;  1HBK A;  4CYE A;  4ZRI A;  3EPY A;  2ABD A;  1GC7 A;  4HDQ A;  4DXA B;  4ZRK A;  3G9W A;  3U7D A;  4F7G A;  2ZPY A;  3AU4 A;  3FLV A;  1MK7 B;  2HRJ A;  4P7I A;  3WA0 A;  5IJM A;  2COP A;  3IVF A;  2D10 A;  1MIX A;  1MK9 B;  2J0K A;  1ISN A;  2CQU A;  1NVL A;  2AEH A;  2WH5 A;  1MIZ B;  2YVC A;  4NY0 A;  4EKU A;  2D2Q A;  1GG3 A;  3PZD A;  1J19 A;  1HB6 A;  2AL6 A;  1Y19 B;  2J0M A;  3FP5 A;  1ACA A;  1ST7 A;  1HB8 A;  1NI2 A;  2FJ9 A;  2FDQ A;  1GC6 A;  2I1K A;  2I1J A; 
#chains in the Genus database with same CATH topology
 3X23 A;  2CB8 A;  4JKG B;  1H4R A;  3QIJ A;  1NTI A;  1VBH A;  2D11 A;  2EMT A;  4JKC A;  2RQ1 A;  2J0J A;  3ZDT A;  1DIK A;  3SBG A;  1GC7 A;  4HDQ A;  3G9W A;  2X0S A;  3FLV A;  4JKA A;  4JKH A;  1VBG A;  1ISN A;  2CQU A;  3E9O A;  1KBL A;  4JKB A;  4JKF A;  2D2Q A;  5JVL A;  1Y19 B;  1KC7 A;  1ACA A;  1ST7 A;  4JKD A;  4ZRJ A;  3BIN A;  3U8Z A;  4HDO A;  1SGH A;  4JKE A;  2LBB A;  1JDE A;  4ILJ A;  3E66 A;  1EF1 A;  1E5W A;  4ILH A;  4ZRK A;  3U7D A;  2ZPY A;  2HRJ A;  5IJM A;  2D10 A;  2AEH A;  4JK8 A;  1GC6 A;  3E9P A;  3SBT A;  2EMS A;  2HE7 A;  4YL8 A;  3PVL A;  4CYE A;  4ZRI A;  4JK9 A;  2ABD A;  4F7G A;  3AU4 A;  1MK7 B;  4P7I A;  3WA0 A;  3ENB A;  1MIZ B;  2YVC A;  2DIK A;  3PZD A;  1J19 A;  2AL6 A;  3FP5 A;  1NI2 A;  4NY0 A;  2FDQ A;  2I1K A;  2I1J A;  3AU5 A;  3E9L A;  1GGO A;  1HBK A;  2R82 A;  3EPY A;  4DXA B;  4JK7 A;  2COP A;  3IVF A;  1MIX A;  1MK9 B;  2J0K A;  1NVL A;  4GXB A;  4TKN A;  2WH5 A;  4ILG B;  4JKG A;  4EKU A;  1GG3 A;  1HB6 A;  2J0M A;  2FJ9 A;  1HB8 A; 
#chains in the Genus database with same CATH homology
 3X23 A;  2CB8 A;  4JKG B;  1H4R A;  3QIJ A;  1NTI A;  1VBH A;  2D11 A;  2EMT A;  4JKC A;  2RQ1 A;  2J0J A;  3ZDT A;  1DIK A;  3SBG A;  1GC7 A;  4HDQ A;  3G9W A;  2X0S A;  3FLV A;  4JKA A;  4JKH A;  1VBG A;  1ISN A;  2CQU A;  3E9O A;  1KBL A;  4JKB A;  4JKF A;  2D2Q A;  5JVL A;  1Y19 B;  1KC7 A;  1ACA A;  1ST7 A;  4JKD A;  4ZRJ A;  3BIN A;  3U8Z A;  4HDO A;  1SGH A;  4JKE A;  2LBB A;  1JDE A;  4ILJ A;  3E66 A;  1EF1 A;  1E5W A;  4ILH A;  4ZRK A;  3U7D A;  2ZPY A;  2HRJ A;  5IJM A;  2D10 A;  2AEH A;  4JK8 A;  1GC6 A;  3E9P A;  3SBT A;  2EMS A;  2HE7 A;  4YL8 A;  3PVL A;  4CYE A;  4ZRI A;  4JK9 A;  2ABD A;  4F7G A;  3AU4 A;  1MK7 B;  4P7I A;  3WA0 A;  3ENB A;  1MIZ B;  2YVC A;  2DIK A;  3PZD A;  1J19 A;  2AL6 A;  3FP5 A;  1NI2 A;  4NY0 A;  2FDQ A;  2I1K A;  2I1J A;  3AU5 A;  3E9L A;  1GGO A;  1HBK A;  2R82 A;  3EPY A;  4DXA B;  4JK7 A;  2COP A;  3IVF A;  1MIX A;  1MK9 B;  2J0K A;  1NVL A;  4GXB A;  4TKN A;  2WH5 A;  4ILG B;  4JKG A;  4EKU A;  1GG3 A;  1HB6 A;  2J0M A;  2FJ9 A;  1HB8 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2FDQA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations