2FJ9 | Genus

Total Genus 34

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	34
sequence length	86
structure length	86
Chain Sequence	SQAEFEKAAEEVRHLKTKPSDEEMLFIYGHYKQATVGDINTERPGMLDFTGKAKWDAWNELKGTSKEDAMKAYINKVEELKKKYGI

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 86 atoms

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86 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Lipid binding protein
source organism	Homo sapiens
publication title	High resolution crystal structures of unliganded and liganded human liver ACBP reveal a new mode of binding for the acyl-CoA ligand. pubmed doi rcsb
molecule keywords	Acyl-CoA-binding protein
total genus	34
structure length	86
sequence length	86
ec nomenclature
pdb deposition date	2006-01-02

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00887	ACBP	Acyl CoA binding protein

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.20.80.10	Mainly Alpha	Up-down Bundle	Acyl-CoA Binding Protein	Acyl-CoA Binding Protein	2fj9A00

2FJ9A 1HB6A 4HDOA 1H4RA 2CB8A 1MIXA 2COPA 1MIZB 2EMSA 2LBBA 1EF1A 2RQ1A 2YVCA 3IVFA 2D10A 4HDQA 5IJMA 3EPYA 3WA0A 3PVLA 1MK9B 2AEHA 2HE7A 2FDQA 3G9WA 3BINA 4ZRJA 4F7GA 3ZDTA 1J19A 2EMTA 2J0JA 4P7IA 2J0KA 4EKUA 1HBKA 1MK7B 1NTIA 3X23A 4NY0A 2D2QA 1HB8A 3AU5A 1SGHA 4DXAB 2HRJA 2ZPYA 1Y19B 1ISNA 2AL6A 3AU4A 3PZDA 3U8ZA 1ACAA 1NVLA 1GC7A 4ZRIA 1E5WA 4ZRKA 2I1JA 3QIJA 1NI2A 2I1KA 3U7DA 3FLVA 2J0MA 4YL8A 2ABDA 4CYEA 1GG3A 2D11A 3FP5A 2CQUA 1ST7A 2WH5A 1GC6A
chains in the Genus database with same CATH superfamily

2R82A 4JK7A 1MIXA 1MIZB 2EMSA 1EF1A 5IJMA 2YVCA 1DIKA 2AEHA 3BINA 4ZRJA 4F7GA 2EMTA 4P7IA 2J0KA 1HBKA 1MK7B 4NY0A 1JDEA 2HRJA 3U8ZA 3PZDA 1KC7A 4JKHA 4JKAA 4ZRIA 2I1JA 3QIJA 4JKGA 3U7DA 1GG3A 1ST7A 1GC6A 4GXBA 4JK9A 3E9PA 4HDOA 2LBBA 4JKBA 3WA0A 2X0SA 3G9WA 3ZDTA 1J19A 2J0JA 3SBTA 4JKDA 3AU5A 1VBGA 4ILJA 2I1KA 2J0MA 3ENBA 4CYEA 3SBGA 2D11A 4JK8A 2CQUA 2FJ9A 1H4RA 4JKCA 2COPA 2RQ1A 3IVFA 2D10A 4HDQA 4JKEA 3EPYA 4TKNA 3PVLA 1MK9B 4JKGB 2FDQA 1NTIA 3X23A 1SGHA 1ISNA 3AU4A 1E5WA 4JKFA 4ZRKA 1NI2A 4ILGB 1GGOA 3FP5A 1HB6A 2CB8A 2HE7A 2DIKA 1VBHA 4EKUA 1KBLA 4ILHA 2D2QA 3E9OA 1HB8A 3E9LA 4DXAB 2ZPYA 1Y19B 1ACAA 2AL6A 1NVLA 3E66A 1GC7A 5JVLA 3FLVA 4YL8A 2ABDA 2WH5A
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 2FJ9 A;  1HB6 A;  4HDO A;  1H4R A;  2CB8 A;  1MIX A;  2COP A;  1MIZ B;  2EMS A;  2LBB A;  1EF1 A;  2RQ1 A;  2YVC A;  3IVF A;  2D10 A;  4HDQ A;  5IJM A;  3EPY A;  3WA0 A;  3PVL A;  1MK9 B;  2AEH A;  2HE7 A;  2FDQ A;  3G9W A;  3BIN A;  4ZRJ A;  4F7G A;  3ZDT A;  1J19 A;  2EMT A;  2J0J A;  4P7I A;  2J0K A;  4EKU A;  1HBK A;  1MK7 B;  1NTI A;  3X23 A;  4NY0 A;  2D2Q A;  1HB8 A;  3AU5 A;  1SGH A;  4DXA B;  2HRJ A;  2ZPY A;  1Y19 B;  1ISN A;  2AL6 A;  3AU4 A;  3PZD A;  3U8Z A;  1ACA A;  1NVL A;  1GC7 A;  4ZRI A;  1E5W A;  4ZRK A;  2I1J A;  3QIJ A;  1NI2 A;  2I1K A;  3U7D A;  3FLV A;  2J0M A;  4YL8 A;  2ABD A;  4CYE A;  1GG3 A;  2D11 A;  3FP5 A;  2CQU A;  1ST7 A;  2WH5 A;  1GC6 A; 
#chains in the Genus database with same CATH topology
 2R82 A;  4JK7 A;  1MIX A;  1MIZ B;  2EMS A;  1EF1 A;  5IJM A;  2YVC A;  1DIK A;  2AEH A;  3BIN A;  4ZRJ A;  4F7G A;  2EMT A;  4P7I A;  2J0K A;  1HBK A;  1MK7 B;  4NY0 A;  1JDE A;  2HRJ A;  3U8Z A;  3PZD A;  1KC7 A;  4JKH A;  4JKA A;  4ZRI A;  2I1J A;  3QIJ A;  4JKG A;  3U7D A;  1GG3 A;  1ST7 A;  1GC6 A;  4GXB A;  4JK9 A;  3E9P A;  4HDO A;  2LBB A;  4JKB A;  3WA0 A;  2X0S A;  3G9W A;  3ZDT A;  1J19 A;  2J0J A;  3SBT A;  4JKD A;  3AU5 A;  1VBG A;  4ILJ A;  2I1K A;  2J0M A;  3ENB A;  4CYE A;  3SBG A;  2D11 A;  4JK8 A;  2CQU A;  2FJ9 A;  1H4R A;  4JKC A;  2COP A;  2RQ1 A;  3IVF A;  2D10 A;  4HDQ A;  4JKE A;  3EPY A;  4TKN A;  3PVL A;  1MK9 B;  4JKG B;  2FDQ A;  1NTI A;  3X23 A;  1SGH A;  1ISN A;  3AU4 A;  1E5W A;  4JKF A;  4ZRK A;  1NI2 A;  4ILG B;  1GGO A;  3FP5 A;  1HB6 A;  2CB8 A;  2HE7 A;  2DIK A;  1VBH A;  4EKU A;  1KBL A;  4ILH A;  2D2Q A;  3E9O A;  1HB8 A;  3E9L A;  4DXA B;  2ZPY A;  1Y19 B;  1ACA A;  2AL6 A;  1NVL A;  3E66 A;  1GC7 A;  5JVL A;  3FLV A;  4YL8 A;  2ABD A;  2WH5 A; 
#chains in the Genus database with same CATH homology
 2R82 A;  4JK7 A;  1MIX A;  1MIZ B;  2EMS A;  1EF1 A;  5IJM A;  2YVC A;  1DIK A;  2AEH A;  3BIN A;  4ZRJ A;  4F7G A;  2EMT A;  4P7I A;  2J0K A;  1HBK A;  1MK7 B;  4NY0 A;  1JDE A;  2HRJ A;  3U8Z A;  3PZD A;  1KC7 A;  4JKH A;  4JKA A;  4ZRI A;  2I1J A;  3QIJ A;  4JKG A;  3U7D A;  1GG3 A;  1ST7 A;  1GC6 A;  4GXB A;  4JK9 A;  3E9P A;  4HDO A;  2LBB A;  4JKB A;  3WA0 A;  2X0S A;  3G9W A;  3ZDT A;  1J19 A;  2J0J A;  3SBT A;  4JKD A;  3AU5 A;  1VBG A;  4ILJ A;  2I1K A;  2J0M A;  3ENB A;  4CYE A;  3SBG A;  2D11 A;  4JK8 A;  2CQU A;  2FJ9 A;  1H4R A;  4JKC A;  2COP A;  2RQ1 A;  3IVF A;  2D10 A;  4HDQ A;  4JKE A;  3EPY A;  4TKN A;  3PVL A;  1MK9 B;  4JKG B;  2FDQ A;  1NTI A;  3X23 A;  1SGH A;  1ISN A;  3AU4 A;  1E5W A;  4JKF A;  4ZRK A;  1NI2 A;  4ILG B;  1GGO A;  3FP5 A;  1HB6 A;  2CB8 A;  2HE7 A;  2DIK A;  1VBH A;  4EKU A;  1KBL A;  4ILH A;  2D2Q A;  3E9O A;  1HB8 A;  3E9L A;  4DXA B;  2ZPY A;  1Y19 B;  1ACA A;  2AL6 A;  1NVL A;  3E66 A;  1GC7 A;  5JVL A;  3FLV A;  4YL8 A;  2ABD A;  2WH5 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2FJ9A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations