2HRJ | Genus

Total Genus 24

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	24
sequence length	121
structure length	121
Chain Sequence	ETLLLRRKFFYSDQNVDSRDPVQLNLLYVQARDDILNGSHPVSFDKACEFAGYQCQIQFGPHNEQKHKPGFLELKDFLPKEYIKQKGERKIFMAHKNCGNMSEIEAKVRYVKLARSLKTYG

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Structural protein
source organism	Gallus gallus
publication title	Structural characterization of the talin F2 FERM subdomain with Coenzyme A and PI(4,5)P2 rcsb
molecule keywords	Talin-1
total genus	24
structure length	121
sequence length	121
ec nomenclature
pdb deposition date	2006-07-20

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.20.80.10	Mainly Alpha	Up-down Bundle	Acyl-CoA Binding Protein	Acyl-CoA Binding Protein	2hrjA01

2CQUA 2HE7A 1GC7A 4YL8A 2FDQA 4ZRKA 2I1KA 2YVCA 3FLVA 4EKUA 1Y19B 1HB8A 3PVLA 1SGHA 4NY0A 2CB8A 4CYEA 2COPA 1H4RA 1E5WA 2I1JA 3U7DA 3ZDTA 3FP5A 4HDOA 2D11A 3WA0A 5IJMA 2HRJA 3BINA 2J0MA 4ZRJA 2D10A 1HBKA 4DXAB 4HDQA 2RQ1A 1NVLA 1NI2A 2AEHA 2EMTA 1ST7A 2LBBA 2D2QA 3IVFA 3PZDA 4P7IA 1MIXA 2WH5A 1ISNA 2ABDA 4ZRIA 3U8ZA 1MIZB 1EF1A 2AL6A 1MK7B 3EPYA 1GG3A 2EMSA 1NTIA 1ACAA 3AU4A 4F7GA 1MK9B 1GC6A 1J19A 2FJ9A 3AU5A 3QIJA 2J0KA 3G9WA 1HB6A 2J0JA 3X23A 2ZPYA
chains in the Genus database with same CATH superfamily

2FDQA 3FLVA 2R82A 3U7DA 1H4RA 2I1JA 3ZDTA 3FP5A 2D11A 3BINA 4ILHA 2DIKA 4JKCA 4ZRJA 4HDQA 2RQ1A 2AEHA 1ST7A 4GXBA 4JK7A 1JDEA 1ISNA 4JKDA 3EPYA 2EMSA 1NTIA 1ACAA 3AU5A 1GC6A 3E66A 3QIJA 2J0KA 3G9WA 2J0JA 3X23A 2ZPYA 4JKFA 2HE7A 3SBTA 2YVCA 1HB8A 4ILGB 1SGHA 4JKGA 3E9OA 4HDOA 2J0MA 1NVLA 3E9LA 1VBGA 5JVLA 1MIZB 1GGOA 1MK9B 1J19A 4ILJA 1HB6A 4JKAA 3PZDA 2CQUA 4YL8A 1GC7A 1VBHA 2I1KA 4NY0A 4CYEA 2COPA 5IJMA 4JKEA 3WA0A 2HRJA 4JK9A 4JKHA 1HBKA 3E9PA 3ENBA 3SBGA 4JKBA 1NI2A 2LBBA 4JKGB 2D2QA 4P7IA 1MIXA 3U8ZA 1EF1A 1MK7B 2FJ9A 2X0SA 4ZRKA 4EKUA 1Y19B 3PVLA 2CB8A 1E5WA 1DIKA 4TKNA 2D10A 1KBLA 4DXAB 2EMTA 3IVFA 2WH5A 2ABDA 4ZRIA 2AL6A 1GG3A 3AU4A 4F7GA 4JK8A 1KC7A
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 2CQU A;  2HE7 A;  1GC7 A;  4YL8 A;  2FDQ A;  4ZRK A;  2I1K A;  2YVC A;  3FLV A;  4EKU A;  1Y19 B;  1HB8 A;  3PVL A;  1SGH A;  4NY0 A;  2CB8 A;  4CYE A;  2COP A;  1H4R A;  1E5W A;  2I1J A;  3U7D A;  3ZDT A;  3FP5 A;  4HDO A;  2D11 A;  3WA0 A;  5IJM A;  2HRJ A;  3BIN A;  2J0M A;  4ZRJ A;  2D10 A;  1HBK A;  4DXA B;  4HDQ A;  2RQ1 A;  1NVL A;  1NI2 A;  2AEH A;  2EMT A;  1ST7 A;  2LBB A;  2D2Q A;  3IVF A;  3PZD A;  4P7I A;  1MIX A;  2WH5 A;  1ISN A;  2ABD A;  4ZRI A;  3U8Z A;  1MIZ B;  1EF1 A;  2AL6 A;  1MK7 B;  3EPY A;  1GG3 A;  2EMS A;  1NTI A;  1ACA A;  3AU4 A;  4F7G A;  1MK9 B;  1GC6 A;  1J19 A;  2FJ9 A;  3AU5 A;  3QIJ A;  2J0K A;  3G9W A;  1HB6 A;  2J0J A;  3X23 A;  2ZPY A; 
#chains in the Genus database with same CATH topology
 2FDQ A;  3FLV A;  2R82 A;  3U7D A;  1H4R A;  2I1J A;  3ZDT A;  3FP5 A;  2D11 A;  3BIN A;  4ILH A;  2DIK A;  4JKC A;  4ZRJ A;  4HDQ A;  2RQ1 A;  2AEH A;  1ST7 A;  4GXB A;  4JK7 A;  1JDE A;  1ISN A;  4JKD A;  3EPY A;  2EMS A;  1NTI A;  1ACA A;  3AU5 A;  1GC6 A;  3E66 A;  3QIJ A;  2J0K A;  3G9W A;  2J0J A;  3X23 A;  2ZPY A;  4JKF A;  2HE7 A;  3SBT A;  2YVC A;  1HB8 A;  4ILG B;  1SGH A;  4JKG A;  3E9O A;  4HDO A;  2J0M A;  1NVL A;  3E9L A;  1VBG A;  5JVL A;  1MIZ B;  1GGO A;  1MK9 B;  1J19 A;  4ILJ A;  1HB6 A;  4JKA A;  3PZD A;  2CQU A;  4YL8 A;  1GC7 A;  1VBH A;  2I1K A;  4NY0 A;  4CYE A;  2COP A;  5IJM A;  4JKE A;  3WA0 A;  2HRJ A;  4JK9 A;  4JKH A;  1HBK A;  3E9P A;  3ENB A;  3SBG A;  4JKB A;  1NI2 A;  2LBB A;  4JKG B;  2D2Q A;  4P7I A;  1MIX A;  3U8Z A;  1EF1 A;  1MK7 B;  2FJ9 A;  2X0S A;  4ZRK A;  4EKU A;  1Y19 B;  3PVL A;  2CB8 A;  1E5W A;  1DIK A;  4TKN A;  2D10 A;  1KBL A;  4DXA B;  2EMT A;  3IVF A;  2WH5 A;  2ABD A;  4ZRI A;  2AL6 A;  1GG3 A;  3AU4 A;  4F7G A;  4JK8 A;  1KC7 A; 
#chains in the Genus database with same CATH homology
 2FDQ A;  3FLV A;  2R82 A;  3U7D A;  1H4R A;  2I1J A;  3ZDT A;  3FP5 A;  2D11 A;  3BIN A;  4ILH A;  2DIK A;  4JKC A;  4ZRJ A;  4HDQ A;  2RQ1 A;  2AEH A;  1ST7 A;  4GXB A;  4JK7 A;  1JDE A;  1ISN A;  4JKD A;  3EPY A;  2EMS A;  1NTI A;  1ACA A;  3AU5 A;  1GC6 A;  3E66 A;  3QIJ A;  2J0K A;  3G9W A;  2J0J A;  3X23 A;  2ZPY A;  4JKF A;  2HE7 A;  3SBT A;  2YVC A;  1HB8 A;  4ILG B;  1SGH A;  4JKG A;  3E9O A;  4HDO A;  2J0M A;  1NVL A;  3E9L A;  1VBG A;  5JVL A;  1MIZ B;  1GGO A;  1MK9 B;  1J19 A;  4ILJ A;  1HB6 A;  4JKA A;  3PZD A;  2CQU A;  4YL8 A;  1GC7 A;  1VBH A;  2I1K A;  4NY0 A;  4CYE A;  2COP A;  5IJM A;  4JKE A;  3WA0 A;  2HRJ A;  4JK9 A;  4JKH A;  1HBK A;  3E9P A;  3ENB A;  3SBG A;  4JKB A;  1NI2 A;  2LBB A;  4JKG B;  2D2Q A;  4P7I A;  1MIX A;  3U8Z A;  1EF1 A;  1MK7 B;  2FJ9 A;  2X0S A;  4ZRK A;  4EKU A;  1Y19 B;  3PVL A;  2CB8 A;  1E5W A;  1DIK A;  4TKN A;  2D10 A;  1KBL A;  4DXA B;  2EMT A;  3IVF A;  2WH5 A;  2ABD A;  4ZRI A;  2AL6 A;  1GG3 A;  3AU4 A;  4F7G A;  4JK8 A;  1KC7 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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2HRJA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN