2LBB | Genus

Total Genus 20

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	20
sequence length	88
structure length	88
Chain Sequence	MSADDFDAAVKYVSNTTTMMASNDDKLCFYKYYKQATVGDCNKPKPGMLQLQEKYKWEAWNALRGMSTESAKEAYVKLLDTLAPSWRN

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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Viewer cachePut cache://localLOAD_/file/5cfd4f1990fea93bf241b44c/pdb.gz

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The Resolver thinks Pdb

loadScript /static/js/j2s/core/corebio.z.js

Time for openFile(/file/5cfd4f1990fea93bf241b44c/pdb.gz): 1438 ms

reading 88 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Jmol

88 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Time for creating model: 17 ms

Adding embedded #jmolscript: select ({0:87});backbone only;select *;

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Protein binding
source organism	Babesia bovis
publication title	Solution structure of acyl CoA binding protein from Babesia bovis T2Bo rcsb
molecule keywords	Acyl CoA binding protein
total genus	20
structure length	88
sequence length	88
ec nomenclature
pdb deposition date	2011-03-29

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00887	ACBP	Acyl CoA binding protein

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.20.80.10	Mainly Alpha	Up-down Bundle	Acyl-CoA Binding Protein	Acyl-CoA Binding Protein	2lbbA00

4F7GA 3FLVA 2ZPYA 3AU5A 3AU4A 4ZRJA 2RQ1A 2CQUA 2AEHA 1HB6A 2I1KA 1HB8A 2YVCA 2LBBA 3IVFA 2I1JA 2FJ9A 2J0MA 3QIJA 1NVLA 1NI2A 2FDQA 1HBKA 2CB8A 3WA0A 2COPA 3U7DA 1MK9B 1ST7A 1Y19B 2EMTA 3PZDA 2ABDA 2D2QA 1MK7B 1E5WA 3EPYA 1J19A 2HE7A 2D10A 3X23A 3FP5A 1H4RA 4HDOA 3BINA 4NY0A 4HDQA 4CYEA 4DXAB 3G9WA 1EF1A 2HRJA 4YL8A 1GC7A 2D11A 4ZRIA 2WH5A 2J0KA 3U8ZA 3ZDTA 4ZRKA 2AL6A 1MIXA 1GG3A 5IJMA 1GC6A 1MIZB 1NTIA 4P7IA 4EKUA 1SGHA 1ACAA 2J0JA 1ISNA 2EMSA 3PVLA
chains in the Genus database with same CATH superfamily

3FLVA 3E9PA 3ENBA 4JKEA 1HB6A 3IVFA 1HB8A 2I1JA 2FDQA 3U7DA 1MK9B 1ST7A 4JKGB 2EMTA 3PZDA 2ABDA 4JKBA 3FP5A 1H4RA 4HDOA 4NY0A 4CYEA 2R82A 3G9WA 2X0SA 1GC7A 3ZDTA 4ZRKA 1MIZB 2J0KA 4JKFA 4F7GA 4ZRJA 3AU4A 2RQ1A 2CQUA 2AEHA 2FJ9A 3QIJA 1NVLA 2CB8A 3WA0A 2COPA 1KBLA 5JVLA 4JKGA 3BINA 4HDQA 4ILJA 1VBGA 2HRJA 4YL8A 4ILGB 1DIKA 2WH5A 1MIXA 1GG3A 1GC6A 1NTIA 4EKUA 3E9OA 2J0JA 2DIKA 1ISNA 3U8ZA 2EMSA 3PVLA 3SBGA 4JK9A 1GGOA 4JKDA 2LBBA 2J0MA 1Y19B 4JK8A 2D2QA 3EPYA 4JKHA 2HE7A 1VBHA 3X23A 1EF1A 2D11A 2AL6A 1KC7A 3E9LA 4P7IA 4GXBA 1SGHA 4JKAA 3E66A 3SBTA 2ZPYA 3AU5A 2I1KA 2YVCA 4TKNA 1NI2A 1HBKA 4ILHA 1MK7B 1E5WA 1J19A 2D10A 4DXAB 4ZRIA 4JKCA 1JDEA 5IJMA 1ACAA 4JK7A
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 4F7G A;  3FLV A;  2ZPY A;  3AU5 A;  3AU4 A;  4ZRJ A;  2RQ1 A;  2CQU A;  2AEH A;  1HB6 A;  2I1K A;  1HB8 A;  2YVC A;  2LBB A;  3IVF A;  2I1J A;  2FJ9 A;  2J0M A;  3QIJ A;  1NVL A;  1NI2 A;  2FDQ A;  1HBK A;  2CB8 A;  3WA0 A;  2COP A;  3U7D A;  1MK9 B;  1ST7 A;  1Y19 B;  2EMT A;  3PZD A;  2ABD A;  2D2Q A;  1MK7 B;  1E5W A;  3EPY A;  1J19 A;  2HE7 A;  2D10 A;  3X23 A;  3FP5 A;  1H4R A;  4HDO A;  3BIN A;  4NY0 A;  4HDQ A;  4CYE A;  4DXA B;  3G9W A;  1EF1 A;  2HRJ A;  4YL8 A;  1GC7 A;  2D11 A;  4ZRI A;  2WH5 A;  2J0K A;  3U8Z A;  3ZDT A;  4ZRK A;  2AL6 A;  1MIX A;  1GG3 A;  5IJM A;  1GC6 A;  1MIZ B;  1NTI A;  4P7I A;  4EKU A;  1SGH A;  1ACA A;  2J0J A;  1ISN A;  2EMS A;  3PVL A; 
#chains in the Genus database with same CATH topology
 3FLV A;  3E9P A;  3ENB A;  4JKE A;  1HB6 A;  3IVF A;  1HB8 A;  2I1J A;  2FDQ A;  3U7D A;  1MK9 B;  1ST7 A;  4JKG B;  2EMT A;  3PZD A;  2ABD A;  4JKB A;  3FP5 A;  1H4R A;  4HDO A;  4NY0 A;  4CYE A;  2R82 A;  3G9W A;  2X0S A;  1GC7 A;  3ZDT A;  4ZRK A;  1MIZ B;  2J0K A;  4JKF A;  4F7G A;  4ZRJ A;  3AU4 A;  2RQ1 A;  2CQU A;  2AEH A;  2FJ9 A;  3QIJ A;  1NVL A;  2CB8 A;  3WA0 A;  2COP A;  1KBL A;  5JVL A;  4JKG A;  3BIN A;  4HDQ A;  4ILJ A;  1VBG A;  2HRJ A;  4YL8 A;  4ILG B;  1DIK A;  2WH5 A;  1MIX A;  1GG3 A;  1GC6 A;  1NTI A;  4EKU A;  3E9O A;  2J0J A;  2DIK A;  1ISN A;  3U8Z A;  2EMS A;  3PVL A;  3SBG A;  4JK9 A;  1GGO A;  4JKD A;  2LBB A;  2J0M A;  1Y19 B;  4JK8 A;  2D2Q A;  3EPY A;  4JKH A;  2HE7 A;  1VBH A;  3X23 A;  1EF1 A;  2D11 A;  2AL6 A;  1KC7 A;  3E9L A;  4P7I A;  4GXB A;  1SGH A;  4JKA A;  3E66 A;  3SBT A;  2ZPY A;  3AU5 A;  2I1K A;  2YVC A;  4TKN A;  1NI2 A;  1HBK A;  4ILH A;  1MK7 B;  1E5W A;  1J19 A;  2D10 A;  4DXA B;  4ZRI A;  4JKC A;  1JDE A;  5IJM A;  1ACA A;  4JK7 A; 
#chains in the Genus database with same CATH homology
 3FLV A;  3E9P A;  3ENB A;  4JKE A;  1HB6 A;  3IVF A;  1HB8 A;  2I1J A;  2FDQ A;  3U7D A;  1MK9 B;  1ST7 A;  4JKG B;  2EMT A;  3PZD A;  2ABD A;  4JKB A;  3FP5 A;  1H4R A;  4HDO A;  4NY0 A;  4CYE A;  2R82 A;  3G9W A;  2X0S A;  1GC7 A;  3ZDT A;  4ZRK A;  1MIZ B;  2J0K A;  4JKF A;  4F7G A;  4ZRJ A;  3AU4 A;  2RQ1 A;  2CQU A;  2AEH A;  2FJ9 A;  3QIJ A;  1NVL A;  2CB8 A;  3WA0 A;  2COP A;  1KBL A;  5JVL A;  4JKG A;  3BIN A;  4HDQ A;  4ILJ A;  1VBG A;  2HRJ A;  4YL8 A;  4ILG B;  1DIK A;  2WH5 A;  1MIX A;  1GG3 A;  1GC6 A;  1NTI A;  4EKU A;  3E9O A;  2J0J A;  2DIK A;  1ISN A;  3U8Z A;  2EMS A;  3PVL A;  3SBG A;  4JK9 A;  1GGO A;  4JKD A;  2LBB A;  2J0M A;  1Y19 B;  4JK8 A;  2D2Q A;  3EPY A;  4JKH A;  2HE7 A;  1VBH A;  3X23 A;  1EF1 A;  2D11 A;  2AL6 A;  1KC7 A;  3E9L A;  4P7I A;  4GXB A;  1SGH A;  4JKA A;  3E66 A;  3SBT A;  2ZPY A;  3AU5 A;  2I1K A;  2YVC A;  4TKN A;  1NI2 A;  1HBK A;  4ILH A;  1MK7 B;  1E5W A;  1J19 A;  2D10 A;  4DXA B;  4ZRI A;  4JKC A;  1JDE A;  5IJM A;  1ACA A;  4JK7 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2LBBA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations