2OASA

Crystal structure of 4-hydroxybutyrate coenzyme a transferase (atoa) in complex with coa from shewanella oneidensis, northeast structural genomics target sor119.
Total Genus 134
50100150200250300350400020406080100120140
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
134
sequence length
427
structure length
427
Chain Sequence
PAIVCQSALEAVSLIRSGETLWTHSMGATPKVLLDALAKHALTLDNITLLQLHTEGAESLSHPSLLGHLRHRCFFGGVPTRPLLQSGDADYVPIFLSEVPKLFRSGEQKIDTAIIQVSPPDKHGMCSLGISVEATLAACQVAGKIIAHINPQMPRTHGDGFIHIDRFAAVYEQSASLPIHSFATGDAVSLAIGQHVAELVRDGDCLQMGIGAIPDAVLSCLTGHKDLGVHTELFSDGILQLVEKGVINNTKKRFYPGKLVTGFALGSQKLYDYVDDNPAVIFMDIEQVNDTSIIRKNPNVMAINSALQVDLTGQVCADSIGTKIYSGVGGQMDFIRGAGLSEGGRSVIALPSTAAGGRISRIASVLSPGAGVVTTRAHVHYIVTEYGAANLKGRSLRERAQALINIAHPDFREQLSRDAFEVWGLNL
50100150200250300350400400300200100
020406080100120Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
molecule tags Transferase
source organism Shewanella oneidensis
publication title Crystal Structure of 4-hydroxybutyrate coenzyme A transferase (AtoA) from Shewanella oneidensis in complex with CoA, Northeast Structural Genomics Target SoR119.
rcsb
molecule keywords 4-hydroxybutyrate coenzyme A transferase
total genus 134
structure length 427
sequence length 427
chains with identical sequence B
ec nomenclature
pdb deposition date 2006-12-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02550 AcetylCoA_hydro Acetyl-CoA hydrolase/transferase N-terminal domain
A PF13336 AcetylCoA_hyd_C Acetyl-CoA hydrolase/transferase C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.750.70 Alpha Beta 2-Layer Sandwich Transcription Regulator spoIIAA 4-hydroxybutyrate coenzyme like domains 2oasA02
3.40.1080.10 Alpha Beta 3-Layer(aba) Sandwich Glutaconate Coenzyme A-transferase Glutaconate Coenzyme A-transferase 2oasA01
3.40.1080.20 Alpha Beta 3-Layer(aba) Sandwich Glutaconate Coenzyme A-transferase Glutaconate Coenzyme A-transferase 2oasA03
2OASA 3D3UA 3RRLA 2AHUA 3EH7A 1OOYA 3RRLB 3CDKA 2AHVA 4KGBA 2HJ0A 1OPEA 1K6DA 3CDKB 3K6MA 5DBNA 1OOZA 3GK7A 1POIA 2NRCA 3DLXA 1M3EA 1O9LA 5DBNB 2NRBA 1POIB 3QDQA 3OXOA 2AHWA 1XR4A
chains in the Genus database with same CATH superfamily
2OASA 3GVJA 3IH9A 3K50A 3D03A 3MOGA 1N6DA 1OOYA 3CDKA 1TILB 3CDKB 3K6MA 5DBNA 3GK7A 3OIZA 1T6RA 4QTPA 1H4YA 2NRCA 1BUZA 2KA5A 4HYLA 5DBNB 1V0EA 1WXWA 4DGFA 5EUZA 1FC9A 1K32A 4L8KA 3OXOA 2AHWA 5EUSA 1V0FA 4HIZA 3DORA 1XR4A 2AHUA 5EUXA 1H4XA 4AEJA 3VSEA 1VC1A 1WXXA 1THNB 3T6OA 1FC6A 1N6EA 3GVKA 4DMGA 1K6DA 3AGDA 1OOZA 3LKLA 2DXNA 4GHNA 3V8VA 4DGHA 1M3EA 1N6FA 3GMFA 3ZXNA 3IHAA 3QDQA 2KLNA 3AGEA 1AUZA 3IH8A 3LLOA 3DUPA 1FCFA 2ZO9B 3NY7A 4XS5A 4KGBA 1HF2A 1OPEA 2CWWA 3ZTBA 3GVLA 2VY9A 3GHFA 1POIA 3DLXA 3MGLA 1POIB 1TH8B 2B78A 3LDFA 3IHBA 3V97A 3D3UA 3RRLA 3C0KA 3EH7A 1BPLA 1J7XA 5EUWA 3RRLB 2AHVA 2HJ0A 1SBOA 2DXLA 3OIRA 3DJAA 5EZBA 5EUUA 1O9LA 1H4ZA 4AE2A 2AS0A 2NRBA 1FC7A 3F43A 3JU4A 3IF5A 2ZOAA 2RRLA 4L1CA 1TIDB 4JC0A
chains in the Genus database with same CATH topology
2OASA 3D3UA 3RRLA 2AHUA 3EH7A 1OOYA 3RRLB 3CDKA 2AHVA 4KGBA 2HJ0A 1OPEA 1K6DA 3CDKB 3K6MA 5DBNA 1OOZA 3GK7A 1POIA 2NRCA 3DLXA 1M3EA 1O9LA 5DBNB 2NRBA 1POIB 3QDQA 3OXOA 2AHWA 1XR4A
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 2OAS A;  3D3U A;  3RRL A;  2AHU A;  3EH7 A;  1OOY A;  3RRL B;  3CDK A;  2AHV A;  4KGB A;  2HJ0 A;  1OPE A;  1K6D A;  3CDK B;  3K6M A;  5DBN A;  1OOZ A;  3GK7 A;  1POI A;  2NRC A;  3DLX A;  1M3E A;  1O9L A;  5DBN B;  2NRB A;  1POI B;  3QDQ A;  3OXO A;  2AHW A;  1XR4 A; 
#chains in the Genus database with same CATH topology
 2OAS A;  3GVJ A;  3IH9 A;  3K50 A;  3D03 A;  3MOG A;  1N6D A;  1OOY A;  3CDK A;  1TIL B;  3CDK B;  3K6M A;  5DBN A;  3GK7 A;  3OIZ A;  1T6R A;  4QTP A;  1H4Y A;  2NRC A;  1BUZ A;  2KA5 A;  4HYL A;  5DBN B;  1V0E A;  1WXW A;  4DGF A;  5EUZ A;  1FC9 A;  1K32 A;  4L8K A;  3OXO A;  2AHW A;  5EUS A;  1V0F A;  4HIZ A;  3DOR A;  1XR4 A;  2AHU A;  5EUX A;  1H4X A;  4AEJ A;  3VSE A;  1VC1 A;  1WXX A;  1THN B;  3T6O A;  1FC6 A;  1N6E A;  3GVK A;  4DMG A;  1K6D A;  3AGD A;  1OOZ A;  3LKL A;  2DXN A;  4GHN A;  3V8V A;  4DGH A;  1M3E A;  1N6F A;  3GMF A;  3ZXN A;  3IHA A;  3QDQ A;  2KLN A;  3AGE A;  1AUZ A;  3IH8 A;  3LLO A;  3DUP A;  1FCF A;  2ZO9 B;  3NY7 A;  4XS5 A;  4KGB A;  1HF2 A;  1OPE A;  2CWW A;  3ZTB A;  3GVL A;  2VY9 A;  3GHF A;  1POI A;  3DLX A;  3MGL A;  1POI B;  1TH8 B;  2B78 A;  3LDF A;  3IHB A;  3V97 A;  3D3U A;  3RRL A;  3C0K A;  3EH7 A;  1BPL A;  1J7X A;  5EUW A;  3RRL B;  2AHV A;  2HJ0 A;  1SBO A;  2DXL A;  3OIR A;  3DJA A;  5EZB A;  5EUU A;  1O9L A;  1H4Z A;  4AE2 A;  2AS0 A;  2NRB A;  1FC7 A;  3F43 A;  3JU4 A;  3IF5 A;  2ZOA A;  2RRL A;  4L1C A;  1TID B;  4JC0 A; 
#chains in the Genus database with same CATH homology
 2OAS A;  3D3U A;  3RRL A;  2AHU A;  3EH7 A;  1OOY A;  3RRL B;  3CDK A;  2AHV A;  4KGB A;  2HJ0 A;  1OPE A;  1K6D A;  3CDK B;  3K6M A;  5DBN A;  1OOZ A;  3GK7 A;  1POI A;  2NRC A;  3DLX A;  1M3E A;  1O9L A;  5DBN B;  2NRB A;  1POI B;  3QDQ A;  3OXO A;  2AHW A;  1XR4 A;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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