2RQ1A

Solution structure of the 4.1r ferm alpha lobe domain
Total Genus 31

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
31
sequence length
109
structure length
109
Chain Sequence
GSHMDPAQLTEDITRYYLCLQLRQDIVAGRLPCSFATLALLGSYTIQSELGDYDPELHGVDYVSDFKLAPNQTKELEEKVMELHKSYRSMTPAQADLEFLENAKKLSMY

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (87-106)TI1 (83-86)TIV2 (107-110)EMPTYUpdating...
connected with : NaN
molecule tags Membrane protein
source organism Homo sapiens
publication title Solution structure and glycophorin C binding studies of the protein 4.1R FERM alpha-lobe domain
pubmed doi rcsb
molecule keywords Protein 4.1
total genus 31
structure length 109
sequence length 109
ec nomenclature
pdb deposition date 2009-01-09
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.80.10 Mainly Alpha Up-down Bundle Acyl-CoA Binding Protein Acyl-CoA Binding Protein 2rq1A00
2ABDA 2WH5A 3PVLA 2J0JA 4YL8A 1MK7B 1MIXA 2COPA 4HDQA 4NY0A 1GC6A 2HRJA 2AEHA 3FLVA 3U8ZA 1SGHA 1ACAA 1HB6A 2J0MA 3QIJA 1Y19B 2LBBA 4ZRKA 1HB8A 2I1KA 1NVLA 3WA0A 4DXAB 3EPYA 4CYEA 3U7DA 1E5WA 1J19A 2AL6A 4ZRJA 2CQUA 3FP5A 1HBKA 2J0KA 2YVCA 3PZDA 3X23A 4EKUA 2CB8A 2FJ9A 3IVFA 1H4RA 3ZDTA 2D2QA 2EMSA 2D10A 1NI2A 2D11A 2ZPYA 2RQ1A 1GG3A 1NTIA 4F7GA 1MIZB 1EF1A 3AU4A 4HDOA 1MK9B 3AU5A 2EMTA 3G9WA 2FDQA 4ZRIA 2I1JA 5IJMA 4P7IA 1ST7A 3BINA 1ISNA 2HE7A 1GC7A
chains in the Genus database with same CATH superfamily
2WH5A 4JK7A 2J0JA 1GGOA 1MK7B 4NY0A 3FLVA 3U8ZA 1KBLA 1ACAA 4JKGA 1Y19B 4DXAB 4ILHA 4CYEA 4JK9A 4JKHA 4JKGB 1E5WA 1J19A 2AL6A 4ZRJA 3U7DA 4EKUA 1JDEA 2CB8A 3IVFA 1NTIA 2FDQA 5JVLA 3SBGA 4JKDA 3ENBA 1GC7A 3E66A 4ILGB 1MIXA 2COPA 1SGHA 1HB8A 2I1KA 3EPYA 3FP5A 3X23A 2J0KA 2YVCA 2DIKA 2FJ9A 2D2QA 2EMSA 2D11A 2RQ1A 3E9OA 4HDOA 5IJMA 1ST7A 3BINA 3PZDA 3PVLA 4YL8A 4GXBA 4HDQA 1DIKA 1GC6A 4JKFA 2HRJA 2X0SA 4JKAA 2J0MA 2LBBA 4JKBA 1NVLA 3WA0A 4JKEA 2CQUA 1HBKA 1H4RA 3ZDTA 1VBGA 1NI2A 1MIZB 1EF1A 3SBTA 3AU5A 2EMTA 4ZRIA 1KC7A 4P7IA 1ISNA 2ABDA 4ILJA 4JKCA 2AEHA 4JK8A 3E9PA 1HB6A 2R82A 3QIJA 4ZRKA 3E9LA 4TKNA 2D10A 2ZPYA 1GG3A 4F7GA 3AU4A 1MK9B 3G9WA 1VBHA 2I1JA 2HE7A
chains in the Genus database with same CATH topology
2WH5A 4JK7A 2J0JA 1GGOA 1MK7B 4NY0A 3FLVA 3U8ZA 1KBLA 1ACAA 4JKGA 1Y19B 4DXAB 4ILHA 4CYEA 4JK9A 4JKHA 4JKGB 1E5WA 1J19A 2AL6A 4ZRJA 3U7DA 4EKUA 1JDEA 2CB8A 3IVFA 1NTIA 2FDQA 5JVLA 3SBGA 4JKDA 3ENBA 1GC7A 3E66A 4ILGB 1MIXA 2COPA 1SGHA 1HB8A 2I1KA 3EPYA 3FP5A 3X23A 2J0KA 2YVCA 2DIKA 2FJ9A 2D2QA 2EMSA 2D11A 2RQ1A 3E9OA 4HDOA 5IJMA 1ST7A 3BINA 3PZDA 3PVLA 4YL8A 4GXBA 4HDQA 1DIKA 1GC6A 4JKFA 2HRJA 2X0SA 4JKAA 2J0MA 2LBBA 4JKBA 1NVLA 3WA0A 4JKEA 2CQUA 1HBKA 1H4RA 3ZDTA 1VBGA 1NI2A 1MIZB 1EF1A 3SBTA 3AU5A 2EMTA 4ZRIA 1KC7A 4P7IA 1ISNA 2ABDA 4ILJA 4JKCA 2AEHA 4JK8A 3E9PA 1HB6A 2R82A 3QIJA 4ZRKA 3E9LA 4TKNA 2D10A 2ZPYA 1GG3A 4F7GA 3AU4A 1MK9B 3G9WA 1VBHA 2I1JA 2HE7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2ABD A;  2WH5 A;  3PVL A;  2J0J A;  4YL8 A;  1MK7 B;  1MIX A;  2COP A;  4HDQ A;  4NY0 A;  1GC6 A;  2HRJ A;  2AEH A;  3FLV A;  3U8Z A;  1SGH A;  1ACA A;  1HB6 A;  2J0M A;  3QIJ A;  1Y19 B;  2LBB A;  4ZRK A;  1HB8 A;  2I1K A;  1NVL A;  3WA0 A;  4DXA B;  3EPY A;  4CYE A;  3U7D A;  1E5W A;  1J19 A;  2AL6 A;  4ZRJ A;  2CQU A;  3FP5 A;  1HBK A;  2J0K A;  2YVC A;  3PZD A;  3X23 A;  4EKU A;  2CB8 A;  2FJ9 A;  3IVF A;  1H4R A;  3ZDT A;  2D2Q A;  2EMS A;  2D10 A;  1NI2 A;  2D11 A;  2ZPY A;  2RQ1 A;  1GG3 A;  1NTI A;  4F7G A;  1MIZ B;  1EF1 A;  3AU4 A;  4HDO A;  1MK9 B;  3AU5 A;  2EMT A;  3G9W A;  2FDQ A;  4ZRI A;  2I1J A;  5IJM A;  4P7I A;  1ST7 A;  3BIN A;  1ISN A;  2HE7 A;  1GC7 A; 
#chains in the Genus database with same CATH topology
 2WH5 A;  4JK7 A;  2J0J A;  1GGO A;  1MK7 B;  4NY0 A;  3FLV A;  3U8Z A;  1KBL A;  1ACA A;  4JKG A;  1Y19 B;  4DXA B;  4ILH A;  4CYE A;  4JK9 A;  4JKH A;  4JKG B;  1E5W A;  1J19 A;  2AL6 A;  4ZRJ A;  3U7D A;  4EKU A;  1JDE A;  2CB8 A;  3IVF A;  1NTI A;  2FDQ A;  5JVL A;  3SBG A;  4JKD A;  3ENB A;  1GC7 A;  3E66 A;  4ILG B;  1MIX A;  2COP A;  1SGH A;  1HB8 A;  2I1K A;  3EPY A;  3FP5 A;  3X23 A;  2J0K A;  2YVC A;  2DIK A;  2FJ9 A;  2D2Q A;  2EMS A;  2D11 A;  2RQ1 A;  3E9O A;  4HDO A;  5IJM A;  1ST7 A;  3BIN A;  3PZD A;  3PVL A;  4YL8 A;  4GXB A;  4HDQ A;  1DIK A;  1GC6 A;  4JKF A;  2HRJ A;  2X0S A;  4JKA A;  2J0M A;  2LBB A;  4JKB A;  1NVL A;  3WA0 A;  4JKE A;  2CQU A;  1HBK A;  1H4R A;  3ZDT A;  1VBG A;  1NI2 A;  1MIZ B;  1EF1 A;  3SBT A;  3AU5 A;  2EMT A;  4ZRI A;  1KC7 A;  4P7I A;  1ISN A;  2ABD A;  4ILJ A;  4JKC A;  2AEH A;  4JK8 A;  3E9P A;  1HB6 A;  2R82 A;  3QIJ A;  4ZRK A;  3E9L A;  4TKN A;  2D10 A;  2ZPY A;  1GG3 A;  4F7G A;  3AU4 A;  1MK9 B;  3G9W A;  1VBH A;  2I1J A;  2HE7 A; 
#chains in the Genus database with same CATH homology
 2WH5 A;  4JK7 A;  2J0J A;  1GGO A;  1MK7 B;  4NY0 A;  3FLV A;  3U8Z A;  1KBL A;  1ACA A;  4JKG A;  1Y19 B;  4DXA B;  4ILH A;  4CYE A;  4JK9 A;  4JKH A;  4JKG B;  1E5W A;  1J19 A;  2AL6 A;  4ZRJ A;  3U7D A;  4EKU A;  1JDE A;  2CB8 A;  3IVF A;  1NTI A;  2FDQ A;  5JVL A;  3SBG A;  4JKD A;  3ENB A;  1GC7 A;  3E66 A;  4ILG B;  1MIX A;  2COP A;  1SGH A;  1HB8 A;  2I1K A;  3EPY A;  3FP5 A;  3X23 A;  2J0K A;  2YVC A;  2DIK A;  2FJ9 A;  2D2Q A;  2EMS A;  2D11 A;  2RQ1 A;  3E9O A;  4HDO A;  5IJM A;  1ST7 A;  3BIN A;  3PZD A;  3PVL A;  4YL8 A;  4GXB A;  4HDQ A;  1DIK A;  1GC6 A;  4JKF A;  2HRJ A;  2X0S A;  4JKA A;  2J0M A;  2LBB A;  4JKB A;  1NVL A;  3WA0 A;  4JKE A;  2CQU A;  1HBK A;  1H4R A;  3ZDT A;  1VBG A;  1NI2 A;  1MIZ B;  1EF1 A;  3SBT A;  3AU5 A;  2EMT A;  4ZRI A;  1KC7 A;  4P7I A;  1ISN A;  2ABD A;  4ILJ A;  4JKC A;  2AEH A;  4JK8 A;  3E9P A;  1HB6 A;  2R82 A;  3QIJ A;  4ZRK A;  3E9L A;  4TKN A;  2D10 A;  2ZPY A;  1GG3 A;  4F7G A;  3AU4 A;  1MK9 B;  3G9W A;  1VBH A;  2I1J A;  2HE7 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

Application loaded.